AlfalfaGEDB | Msa0101270

M. sativa cultivar zhongmu-4 / Msa0101270

KEGG: -
GO: -
PFAM: PF04765.16

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0101270	XP_003589303.2	97.660	470	8	2	1	468	1	469	0.0	943

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0101270	sp\|Q9FZ97\|MUC70_ARATH	39.262	298	166	7	174	459	214	508	1.85e-60	210

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0101270	G7I5A2	97.660	470	8	2	1	468	1	469	0.0	943

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000050	Msa0101270	0.825208	5.313488e-54	-8.615850e-47
Msa0001450	Msa0101270	0.827483	1.525661e-54	-8.615850e-47
Msa0001940	Msa0101270	0.844471	7.406544e-59	-8.615850e-47
Msa0001960	Msa0101270	0.803732	3.029576e-49	-8.615850e-47
Msa0002680	Msa0101270	0.821521	3.862893e-53	-8.615850e-47
Msa0002710	Msa0101270	0.830504	2.829133e-55	-8.615850e-47
Msa0003700	Msa0101270	0.845045	5.186022e-59	-8.615850e-47
Msa0003720	Msa0101270	0.863910	1.776512e-64	-8.615850e-47
Msa0003890	Msa0101270	0.833321	5.705038e-56	-8.615850e-47
Msa0006110	Msa0101270	0.850397	1.743846e-60	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0101270	MtrunA17_Chr1g0154411	97.660	470	8	2	1	468	1	469	0.0	943
Msa0101270	MtrunA17_Chr8g0361841	41.528	301	160	5	174	459	161	460	7.15e-73	237
Msa0101270	MtrunA17_Chr1g0200501	40.000	305	160	6	174	459	395	695	4.46e-67	228
Msa0101270	MtrunA17_Chr4g0047251	40.129	309	170	6	174	468	166	473	1.05e-64	218
Msa0101270	MtrunA17_Chr8g0378731	37.075	294	180	3	173	462	158	450	1.06e-62	211
Msa0101270	MtrunA17_Chr2g0282261	39.189	296	169	5	174	459	206	500	1.11e-60	207
Msa0101270	MtrunA17_Chr2g0317511	40.656	305	153	9	174	459	227	522	6.08e-59	203
Msa0101270	MtrunA17_Chr2g0285981	32.993	294	182	9	164	447	107	395	1.06e-37	143

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0101270	AT5G42660.1	64.831	472	148	4	1	466	1	460	0.0	625
Msa0101270	AT2G02910.2	42.904	303	160	5	174	465	155	455	1.62e-75	244
Msa0101270	AT2G02910.1	42.904	303	160	5	174	465	155	455	1.62e-75	244
Msa0101270	AT4G38500.1	33.557	447	252	10	23	462	38	446	5.98e-70	231
Msa0101270	AT1G34550.2	40.000	305	160	6	174	459	327	627	1.49e-68	231
Msa0101270	AT1G34550.1	40.000	305	160	6	174	459	421	721	4.04e-68	231
Msa0101270	AT4G09630.2	39.677	310	164	6	174	464	381	686	1.34e-66	226
Msa0101270	AT4G09630.1	39.677	310	164	6	174	464	396	701	1.82e-66	226
Msa0101270	AT1G53040.2	41.077	297	163	5	174	459	187	482	1.19e-64	218
Msa0101270	AT1G53040.1	41.077	297	163	5	174	459	187	482	1.19e-64	218

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Find 115 sgRNAs with CRISPR-Local

Find 209 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTACGACGGCACATTGT+GGG	0.478159	1_3:-7862097	Msa0101270:CDS
AAACTAGATTCTTCTTCCAC+GGG	0.546495	1_3:+7862418	None:intergenic
AAGAGATTTAATGGAAAGAA+AGG	0.439466	1_3:-7861160	Msa0101270:intron
AAGGATCTGGTCAATAGCAT+GGG	0.590506	1_3:-7860685	Msa0101270:CDS
AATTAGTGGGTCGCAGAGTT+GGG	0.373736	1_3:-7861796	Msa0101270:CDS
ACACGAATTGGTTTAAGACC+AGG	0.598308	1_3:-7863188	Msa0101270:CDS
ACAGTGCGAATGGTGGGTTT+AGG	0.412123	1_3:-7862070	Msa0101270:CDS
ACGAGCTCCATGTTCTGATA+TGG	0.376444	1_3:+7861291	None:intergenic
ACTAAAAGCGCAGGAATTAG+TGG	0.395475	1_3:-7861810	Msa0101270:CDS
ACTCCAAGTCCCAATTTAGG+AGG	0.588616	1_3:-7861366	Msa0101270:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAAAAAAAAAATCACAGTGG+CGG	-	chr1_3:7860374-7860393	Msa0101270:three_prime_UTR	30.0%
GGAAGATTGATATACCAAAT+CGG	+	chr1_3:7860444-7860463	None:intergenic	30.0%
AGAAGCTTCTTGTTAAATAC+TGG	-	chr1_3:7860585-7860604	Msa0101270:three_prime_UTR	30.0%
AAGGAAAGTAAATTAGATGG+AGG	-	chr1_3:7861057-7861076	Msa0101270:intron	30.0%
AGGAAAGTAAATTAGATGGA+GGG	-	chr1_3:7861058-7861077	Msa0101270:intron	30.0%
GAAGACCTACAAAAACTAAA+TGG	-	chr1_3:7861107-7861126	Msa0101270:intron	30.0%
TCTACAAACAACAACAATCA+AGG	+	chr1_3:7861196-7861215	None:intergenic	30.0%
GAAGTGAAATGAAAGAACTA+AGG	+	chr1_3:7861275-7861294	None:intergenic	30.0%
AGTTCTTTCATTTCACTTCT+AGG	-	chr1_3:7861276-7861295	Msa0101270:CDS	30.0%
TTTGATAAAACTTAAGGAGG+CGG	-	chr1_3:7861323-7861342	Msa0101270:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	7860361	7863505	7860361	ID=Msa0101270;Name=Msa0101270
chr1_3	mRNA	7860361	7863505	7860361	ID=Msa0101270-mRNA-1;Parent=Msa0101270;Name=Msa0101270-mRNA-1;_AED=0.05;_eAED=0.05;_QI=106\|1\|1\|1\|1\|1\|6\|290\|468
chr1_3	exon	7860361	7860883	7860361	ID=Msa0101270-mRNA-1:exon:3085;Parent=Msa0101270-mRNA-1
chr1_3	exon	7861161	7861437	7861161	ID=Msa0101270-mRNA-1:exon:3084;Parent=Msa0101270-mRNA-1
chr1_3	exon	7861709	7861864	7861709	ID=Msa0101270-mRNA-1:exon:3083;Parent=Msa0101270-mRNA-1
chr1_3	exon	7861950	7862126	7861950	ID=Msa0101270-mRNA-1:exon:3082;Parent=Msa0101270-mRNA-1
chr1_3	exon	7862270	7862487	7862270	ID=Msa0101270-mRNA-1:exon:3081;Parent=Msa0101270-mRNA-1
chr1_3	exon	7863054	7863505	7863054	ID=Msa0101270-mRNA-1:exon:3080;Parent=Msa0101270-mRNA-1
chr1_3	five_prime_UTR	7863400	7863505	7863400	ID=Msa0101270-mRNA-1:five_prime_utr;Parent=Msa0101270-mRNA-1
chr1_3	CDS	7863054	7863399	7863054	ID=Msa0101270-mRNA-1:cds;Parent=Msa0101270-mRNA-1
chr1_3	CDS	7862270	7862487	7862270	ID=Msa0101270-mRNA-1:cds;Parent=Msa0101270-mRNA-1
chr1_3	CDS	7861950	7862126	7861950	ID=Msa0101270-mRNA-1:cds;Parent=Msa0101270-mRNA-1
chr1_3	CDS	7861709	7861864	7861709	ID=Msa0101270-mRNA-1:cds;Parent=Msa0101270-mRNA-1
chr1_3	CDS	7861161	7861437	7861161	ID=Msa0101270-mRNA-1:cds;Parent=Msa0101270-mRNA-1
chr1_3	CDS	7860651	7860883	7860651	ID=Msa0101270-mRNA-1:cds;Parent=Msa0101270-mRNA-1
chr1_3	three_prime_UTR	7860361	7860650	7860361	ID=Msa0101270-mRNA-1:three_prime_utr;Parent=Msa0101270-mRNA-1

Gene Sequence

>Msa0101270

ATGTTCCACAGCAACACTCTACCGATCTCAATCTCCGACGACGAAACCGATGAACTAGGTCGAATGCGCGTTCGTGCTCGCCGTAAACGAAAGAAACTCGGTAACAAACGTTTCTTCAAGAAGCTTCTTGTTAAATACTGGATGCTACTCATCATTATTCCAGCTGCGTTTTTACTCTTTTACGAGATTACACGAATTGGTTTAAGACCAGGTAGTTCTTCTTCCAACATTGCTTCAACAACGACAAATCAAGATAATCATGATCATCGATCTAAAGAGACCATTGTTAAAACTAACTTGAATCGTCTTGATCCTACTACTCATGTTGTTGCTGGTGTTAGAGAACGTTGCTTGAAGCTTCTACCACCTGAAAAACTTGAGCAACTAGAGATTCCCGTGGAAGAAGAATCTAGTTTACCTATTGGTAAAGTCTTGTATATGTCAGCGACTGATGCGTCTTTAATAGGAGGGAATGCTACATTGTCTCAATTGCGTGCAGAGGATACAAGTTTTAATTTATTTACTGGAAACCAAACATTTGAGGAAAGAGATAGAAGTTTTGAGGTGAAAGAAACTACGACGGCACATTGTGGGTTCTACAGTGCGAATGGTGGGTTTAGGATATCAGATGAAGATAAAAGTTTCATGCAAGGTTGCAAAGTGGTTGTATCTACTTGTGCATTTGGTGGCGGAGATGATCTCTATCAACCGATTGGAATGTCAGAGGCTTCACTTAAGAAGGTTTGCTATGTAGCATTCTGGGATGAAATCACACTAAAAGCGCAGGAATTAGTGGGTCGCAGAGTTGGGGATAATGGATTTGTTGGAAAGTGGCGTGTTATTGTCGTTCAGGATCTTCCTTTTTCTGATCAAAGGTTGAATGGTAAAATTCCCAAGATGTTAAGCCATCGCCTTTTCCCTCAAGCAAAATACTCTATTTGGGTAGACTCCAAGTCCCAATTTAGGAGGGACCCACTAGGTGTGTTGGAAGCGCTCCTTTGGCGCACAAGTTCTGTACTTGCCATATCAGAACATGGAGCTCGTAGTAGTGTCTATGATGAGGCTAAGGCCGTTGTCAGGAAAAACAAAGCGAAGCCAGAGGAAGTTGAAGTGCAACTGAATCAATACAGAAAAGATGGCATGCCTGTAGACAAGAGATTTAATGGAAAGAAAGCTCTATGTGAAGCCTCTGTTATCGTCAGGAAGCATACGCCACTAACTAATCTATTGATGTGCGTCTGGTTTAATGAGGTGGTTCGCTTCACGTCTAGGGATCAGCTCAGCTTCCCATATGTTCTGTGGCGGTTGAAAGCATTCAAAAACATTAACATGTTCCCTGTCTGCACTCGCAAGGATCTGGTCAATAGCATGGGACACATCCGCAAAGCAAAACCATTGCAAAGCTGA

Protein sequence

>Msa0101270

MFHSNTLPISISDDETDELGRMRVRARRKRKKLGNKRFFKKLLVKYWMLLIIIPAAFLLFYEITRIGLRPGSSSSNIASTTTNQDNHDHRSKETIVKTNLNRLDPTTHVVAGVRERCLKLLPPEKLEQLEIPVEEESSLPIGKVLYMSATDASLIGGNATLSQLRAEDTSFNLFTGNQTFEERDRSFEVKETTTAHCGFYSANGGFRISDEDKSFMQGCKVVVSTCAFGGGDDLYQPIGMSEASLKKVCYVAFWDEITLKAQELVGRRVGDNGFVGKWRVIVVQDLPFSDQRLNGKIPKMLSHRLFPQAKYSIWVDSKSQFRRDPLGVLEALLWRTSSVLAISEHGARSSVYDEAKAVVRKNKAKPEEVEVQLNQYRKDGMPVDKRFNGKKALCEASVIVRKHTPLTNLLMCVWFNEVVRFTSRDQLSFPYVLWRLKAFKNINMFPVCTRKDLVNSMGHIRKAKPLQS*