AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0101270


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0101270 MtrunA17_Chr1g0154411 97.660 470 8 2 1 468 1 469 0.0 943
Msa0101270 MtrunA17_Chr8g0361841 41.528 301 160 5 174 459 161 460 7.15e-73 237
Msa0101270 MtrunA17_Chr1g0200501 40.000 305 160 6 174 459 395 695 4.46e-67 228
Msa0101270 MtrunA17_Chr4g0047251 40.129 309 170 6 174 468 166 473 1.05e-64 218
Msa0101270 MtrunA17_Chr8g0378731 37.075 294 180 3 173 462 158 450 1.06e-62 211
Msa0101270 MtrunA17_Chr2g0282261 39.189 296 169 5 174 459 206 500 1.11e-60 207
Msa0101270 MtrunA17_Chr2g0317511 40.656 305 153 9 174 459 227 522 6.08e-59 203
Msa0101270 MtrunA17_Chr2g0285981 32.993 294 182 9 164 447 107 395 1.06e-37 143
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0101270 AT5G42660.1 64.831 472 148 4 1 466 1 460 0.0 625
Msa0101270 AT2G02910.2 42.904 303 160 5 174 465 155 455 1.62e-75 244
Msa0101270 AT2G02910.1 42.904 303 160 5 174 465 155 455 1.62e-75 244
Msa0101270 AT4G38500.1 33.557 447 252 10 23 462 38 446 5.98e-70 231
Msa0101270 AT1G34550.2 40.000 305 160 6 174 459 327 627 1.49e-68 231
Msa0101270 AT1G34550.1 40.000 305 160 6 174 459 421 721 4.04e-68 231
Msa0101270 AT4G09630.2 39.677 310 164 6 174 464 381 686 1.34e-66 226
Msa0101270 AT4G09630.1 39.677 310 164 6 174 464 396 701 1.82e-66 226
Msa0101270 AT1G53040.2 41.077 297 163 5 174 459 187 482 1.19e-64 218
Msa0101270 AT1G53040.1 41.077 297 163 5 174 459 187 482 1.19e-64 218
Msa0101270 AT1G53040.6 41.077 297 163 5 174 459 187 482 1.19e-64 218
Msa0101270 AT1G53040.3 41.017 295 162 5 174 457 187 480 1.90e-64 216
Msa0101270 AT1G53040.4 41.017 295 162 5 174 457 187 480 1.90e-64 216
Msa0101270 AT1G28240.1 39.262 298 166 7 174 459 214 508 1.88e-61 210
Msa0101270 AT1G53040.5 40.465 215 120 3 174 381 187 400 8.27e-45 162
Msa0101270 AT5G46220.1 30.345 290 188 7 153 432 97 382 4.76e-36 139

Find 115 sgRNAs with CRISPR-Local

Find 209 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCAAGCAAAATACTCTATT+TGG 0.077140 1_3:-7861393 Msa0101270:CDS
CAAAGCTGATTTAGTTAAAT+TGG 0.173985 1_3:-7860637 Msa0101270:exon
TCCAAAGCAAAATCTCTTTC+TGG 0.212926 1_3:+7860434 None:intergenic
CTAGTGGGTCCCTCCTAAAT+TGG 0.222026 1_3:+7861356 None:intergenic
AGAAGCTTCTTGTTAAATAC+TGG 0.261001 1_3:-7863259 Msa0101270:CDS
TTCAACCTTTGATCAGAAAA+AGG 0.262613 1_3:+7861725 None:intergenic
CCTGTAGACAAGAGATTTAA+TGG 0.266147 1_3:-7861169 Msa0101270:CDS
GCTAATGAACAAATGAAATA+AGG 0.306810 1_3:+7860578 None:intergenic
TATCTCTTTCCTCAAATGTT+TGG 0.307680 1_3:+7862281 None:intergenic
CACATATACCTGATTTGAAT+TGG 0.324506 1_3:+7860556 None:intergenic
TTCATTAGCCAATTCAAATC+AGG 0.343259 1_3:-7860564 Msa0101270:three_prime_UTR
TACCGAGTTTCTTTCGTTTA+CGG 0.350045 1_3:+7863297 None:intergenic
GCGACTGATGCGTCTTTAAT+AGG 0.361138 1_3:-7862367 Msa0101270:CDS
AGGTTTGCTATGTAGCATTC+TGG 0.362293 1_3:-7861844 Msa0101270:CDS
GGTCGCAGAGTTGGGGATAA+TGG 0.363714 1_3:-7861788 Msa0101270:CDS
GTGGCGTGTTATTGTCGTTC+AGG 0.366914 1_3:-7861753 Msa0101270:CDS
GTTGTATCTACTTGTGCATT+TGG 0.368333 1_3:-7862005 Msa0101270:CDS
TAGACTCCAAGTCCCAATTT+AGG 0.368651 1_3:-7861369 Msa0101270:CDS
AATTAGTGGGTCGCAGAGTT+GGG 0.373736 1_3:-7861796 Msa0101270:CDS
CCATTAAATCTCTTGTCTAC+AGG 0.375251 1_3:+7861169 None:intergenic
ACGAGCTCCATGTTCTGATA+TGG 0.376444 1_3:+7861291 None:intergenic
GTTGGGGATAATGGATTTGT+TGG 0.377221 1_3:-7861779 Msa0101270:CDS
TTCAACCGCCACAGAACATA+TGG 0.378529 1_3:+7860748 None:intergenic
GAAGAATCTAGTTTACCTAT+TGG 0.384777 1_3:-7862409 Msa0101270:CDS
ACTAAAAGCGCAGGAATTAG+TGG 0.395475 1_3:-7861810 Msa0101270:CDS
TCTCCTCTCATAATCGGTAT+AGG 0.396549 1_3:-7860507 Msa0101270:three_prime_UTR
TCAAGCAAAATACTCTATTT+GGG 0.399723 1_3:-7861392 Msa0101270:CDS
CCTACTACTCATGTTGTTGC+TGG 0.399883 1_3:-7863065 Msa0101270:CDS
CTAATCTATTGATGTGCGTC+TGG 0.401746 1_3:-7860816 Msa0101270:CDS
TCTTCCTCTCCTCTCATAAT+CGG 0.404697 1_3:-7860513 Msa0101270:three_prime_UTR
ACAGTGCGAATGGTGGGTTT+AGG 0.412123 1_3:-7862070 Msa0101270:CDS
AGTTGCACTTCAACTTCCTC+TGG 0.414058 1_3:+7861217 None:intergenic
TCTGCGTTATCATTCCGATT+TGG 0.415047 1_3:-7863417 Msa0101270:five_prime_UTR
GAATTAGTGGGTCGCAGAGT+TGG 0.426550 1_3:-7861797 Msa0101270:CDS
AGTGGCGGCAGACAGTTATA+AGG 0.437613 1_3:-7863455 Msa0101270:five_prime_UTR
AAGAGATTTAATGGAAAGAA+AGG 0.439466 1_3:-7861160 Msa0101270:intron
TGTCTGCACTCGCAAGGATC+TGG 0.451591 1_3:-7860698 Msa0101270:CDS
GTGTGTTGGAAGCGCTCCTT+TGG 0.451902 1_3:-7861333 Msa0101270:CDS
AGGTGGTTCGCTTCACGTCT+AGG 0.456871 1_3:-7860786 Msa0101270:CDS
TAGTGGGTCCCTCCTAAATT+GGG 0.459505 1_3:+7861357 None:intergenic
TACTGGAAACCAAACATTTG+AGG 0.460309 1_3:-7862290 Msa0101270:CDS
CTGAATCAATACAGAAAAGA+TGG 0.467593 1_3:-7861196 Msa0101270:CDS
GTCAGAGGCTTCACTTAAGA+AGG 0.470559 1_3:-7861949 Msa0101270:intron
GGTTTGCTATGTAGCATTCT+GGG 0.477968 1_3:-7861843 Msa0101270:CDS
AAACTACGACGGCACATTGT+GGG 0.478159 1_3:-7862097 Msa0101270:CDS
ATGAGGCTAAGGCCGTTGTC+AGG 0.480704 1_3:-7861255 Msa0101270:CDS
GTCCCTCCTAAATTGGGACT+TGG 0.482377 1_3:+7861363 None:intergenic
CACATCAATAGATTAGTTAG+TGG 0.489792 1_3:+7860823 None:intergenic
CCAGCAACAACATGAGTAGT+AGG 0.491549 1_3:+7863065 None:intergenic
ATAATGGATTTGTTGGAAAG+TGG 0.493171 1_3:-7861772 Msa0101270:CDS
GGTGGTTCGCTTCACGTCTA+GGG 0.510231 1_3:-7860785 Msa0101270:CDS
GTGAAGCCTCTGTTATCGTC+AGG 0.511246 1_3:-7860855 Msa0101270:CDS
TAGTTCATCGGTTTCGTCGT+CGG 0.511725 1_3:+7863343 None:intergenic
TTACTATGAGCTGTTTGAGT+AGG 0.512906 1_3:-7860464 Msa0101270:three_prime_UTR
GGAAGATTGATATACCAAAT+CGG 0.520062 1_3:+7863403 None:intergenic
TAACTAAATCAGCTTTGCAA+TGG 0.522702 1_3:+7860643 None:intergenic
ATATACAAGACTTTACCAAT+AGG 0.522988 1_3:+7862394 None:intergenic
TAAACTAGATTCTTCTTCCA+CGG 0.523311 1_3:+7862417 None:intergenic
GATGATCTCTATCAACCGAT+TGG 0.532985 1_3:-7861975 Msa0101270:CDS
GTATCTACTTGTGCATTTGG+TGG 0.539522 1_3:-7862002 Msa0101270:CDS
AGATCCTTGCGAGTGCAGAC+AGG 0.541955 1_3:+7860700 None:intergenic
TGTCGTTGTTGAAGCAATGT+TGG 0.543414 1_3:+7863154 None:intergenic
AAACTAGATTCTTCTTCCAC+GGG 0.546495 1_3:+7862418 None:intergenic
GACGACGAAACCGATGAACT+AGG 0.549148 1_3:-7863341 Msa0101270:CDS
CAAGGATCTGGTCAATAGCA+TGG 0.556262 1_3:-7860686 Msa0101270:CDS
GAGGGACCCACTAGGTGTGT+TGG 0.558276 1_3:-7861347 Msa0101270:CDS
TCTACTTGTGCATTTGGTGG+CGG 0.565708 1_3:-7861999 Msa0101270:CDS
TAAGTTAGAAAACTACAGCT+AGG 0.566181 1_3:+7860603 None:intergenic
GTACAGAACTTGTGCGCCAA+AGG 0.567215 1_3:+7861317 None:intergenic
TAGTGTCTATGATGAGGCTA+AGG 0.569258 1_3:-7861266 Msa0101270:CDS
GTTCCCTGTCTGCACTCGCA+AGG 0.571226 1_3:-7860704 Msa0101270:CDS
GAAGATAAAAGTTTCATGCA+AGG 0.574340 1_3:-7862038 Msa0101270:CDS
ACTGATGCGTCTTTAATAGG+AGG 0.575647 1_3:-7862364 Msa0101270:CDS
TTGCTTGAGGGAAAAGGCGA+TGG 0.577341 1_3:+7861407 None:intergenic
GAAGCCTCTGACATTCCAAT+CGG 0.578839 1_3:+7861960 None:intergenic
GTGCGTCTGGTTTAATGAGG+TGG 0.582996 1_3:-7860803 Msa0101270:CDS
TCAACCGCCACAGAACATAT+GGG 0.583405 1_3:+7860749 None:intergenic
TGAAATCACACTAAAAGCGC+AGG 0.586944 1_3:-7861819 Msa0101270:CDS
ATTAGTGGGTCGCAGAGTTG+GGG 0.587159 1_3:-7861795 Msa0101270:CDS
ACTCCAAGTCCCAATTTAGG+AGG 0.588616 1_3:-7861366 Msa0101270:CDS
CGCCGTAAACGAAAGAAACT+CGG 0.589754 1_3:-7863299 Msa0101270:CDS
AAGGATCTGGTCAATAGCAT+GGG 0.590506 1_3:-7860685 Msa0101270:CDS
GGTTCTACAGTGCGAATGGT+GGG 0.594182 1_3:-7862076 Msa0101270:CDS
TCGTCGTCGGAGATTGAGAT+CGG 0.596070 1_3:+7863356 None:intergenic
ACACGAATTGGTTTAAGACC+AGG 0.598308 1_3:-7863188 Msa0101270:CDS
GCGCATTCGACCTAGTTCAT+CGG 0.599118 1_3:+7863331 None:intergenic
GATCCTTGCGAGTGCAGACA+GGG 0.600367 1_3:+7860701 None:intergenic
GAAACTACGACGGCACATTG+TGG 0.606798 1_3:-7862098 Msa0101270:CDS
CAATTTAGGAGGGACCCACT+AGG 0.609024 1_3:-7861355 Msa0101270:CDS
CTCCAAGTCCCAATTTAGGA+GGG 0.612198 1_3:-7861365 Msa0101270:CDS
GGGTTCTACAGTGCGAATGG+TGG 0.617468 1_3:-7862077 Msa0101270:CDS
AGCGCTTCCAACACACCTAG+TGG 0.619009 1_3:+7861340 None:intergenic
GTTGAATGGTAAAATTCCCA+AGG 0.623439 1_3:-7861708 Msa0101270:intron
ATTGTCTCAATTGCGTGCAG+AGG 0.623452 1_3:-7862332 Msa0101270:CDS
CTAAAAGCGCAGGAATTAGT+GGG 0.625147 1_3:-7861809 Msa0101270:CDS
TCGTAGTAGTGTCTATGATG+AGG 0.628284 1_3:-7861272 Msa0101270:CDS
GATGTGCGTCTGGTTTAATG+AGG 0.632480 1_3:-7860806 Msa0101270:CDS
CTGATGCGTCTTTAATAGGA+GGG 0.632733 1_3:-7862363 Msa0101270:CDS
TCAGCTTCCCATATGTTCTG+TGG 0.637981 1_3:-7860756 Msa0101270:CDS
TGTGGGTTCTACAGTGCGAA+TGG 0.652523 1_3:-7862080 Msa0101270:CDS
GCGCTTCCAACACACCTAGT+GGG 0.655267 1_3:+7861341 None:intergenic
GCTTCCCATATGTTCTGTGG+CGG 0.655449 1_3:-7860753 Msa0101270:CDS
GTACTTGCCATATCAGAACA+TGG 0.661039 1_3:-7861298 Msa0101270:CDS
ATGAGAGGAGAGGAAGAGAG+AGG 0.663436 1_3:+7860519 None:intergenic
TTTCATGCAAGGTTGCAAAG+TGG 0.666633 1_3:-7862027 Msa0101270:CDS
TAACCTATACCGATTATGAG+AGG 0.674432 1_3:+7860504 None:intergenic
TCAACCGATTGGAATGTCAG+AGG 0.688554 1_3:-7861964 Msa0101270:CDS
TATACCGATTATGAGAGGAG+AGG 0.691482 1_3:+7860509 None:intergenic
GTTATCGTAGAAATCTGTGT+CGG 0.699130 1_3:+7860403 None:intergenic
AGATCGGTAGAGTGTTGCTG+TGG 0.705202 1_3:+7863372 None:intergenic
AGTGTTGCTGTGGAACATTG+AGG 0.708184 1_3:+7863382 None:intergenic
TGAGCAACTAGAGATTCCCG+TGG 0.719886 1_3:-7862434 Msa0101270:CDS
ATGTTGGAAGAAGAACTACC+TGG 0.722649 1_3:+7863170 None:intergenic
ATGCTTCCTGACGATAACAG+AGG 0.723941 1_3:+7860849 None:intergenic
ATAGGTGAAAGAAACTACGA+CGG 0.775814 1_3:-7862108 Msa0101270:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAAAAATCAAGAAAAA+GGG + chr1_3:7860836-7860855 None:intergenic 10.0%
!! AATAAAAAAAATCAAGAAAA+AGG + chr1_3:7860837-7860856 None:intergenic 10.0%
!!! TTTTATTTTGATAAAACTTA+AGG - chr1_3:7861317-7861336 Msa0101270:CDS 10.0%
!! TTATTATAAGTAATATAGTT+TGG - chr1_3:7861697-7861716 Msa0101270:intron 10.0%
!!! ACAAGTTTTAATTTATTTAC+TGG - chr1_3:7861537-7861556 Msa0101270:intron 15.0%
!! ATGTGAATTAAAATTAATCT+GGG + chr1_3:7861628-7861647 None:intergenic 15.0%
!! AATGTGAATTAAAATTAATC+TGG + chr1_3:7861629-7861648 None:intergenic 15.0%
!! GATTCAACATTATAAAATAT+TGG + chr1_3:7862947-7862966 None:intergenic 15.0%
!! TAACAAAAAAAAAATCACAG+TGG - chr1_3:7860371-7860390 Msa0101270:three_prime_UTR 20.0%
!!! ATTCAAGTTAGTTTTAACAA+TGG + chr1_3:7860750-7860769 None:intergenic 20.0%
!! AAAACTATTATGAAAACTCT+AGG - chr1_3:7861130-7861149 Msa0101270:intron 20.0%
!! AAACTATTATGAAAACTCTA+GGG - chr1_3:7861131-7861150 Msa0101270:intron 20.0%
!! ATCATAAAGTGAATTCAAAT+AGG - chr1_3:7861233-7861252 Msa0101270:CDS 20.0%
!!! TATTTTGATAAAACTTAAGG+AGG - chr1_3:7861320-7861339 Msa0101270:CDS 20.0%
!! TTTCAATTGATATTGTTGAT+AGG - chr1_3:7862816-7862835 Msa0101270:intron 20.0%
!! AAAATCAAGAAAAAGGGTTT+TGG + chr1_3:7860830-7860849 None:intergenic 25.0%
! TATATGTTTGATTCCACTAT+TGG + chr1_3:7860981-7861000 None:intergenic 25.0%
! TATTATGTAGTAAAGAGAGT+AGG - chr1_3:7861017-7861036 Msa0101270:intron 25.0%
! AGTAAGGAAAGTAAATTAGA+TGG - chr1_3:7861054-7861073 Msa0101270:intron 25.0%
!!! GTTTTCCATTTAGTTTTTGT+AGG + chr1_3:7861115-7861134 None:intergenic 25.0%
!! GTTTGTAGAAATACTTTTGT+TGG - chr1_3:7861207-7861226 Msa0101270:CDS 25.0%
! ATATACAAGACTTTACCAAT+AGG + chr1_3:7861453-7861472 None:intergenic 25.0%
! TATTTGCCAAATCTATTTAG+TGG - chr1_3:7861972-7861991 Msa0101270:CDS 25.0%
! TATCAGCAAATGGAAAAATT+AGG + chr1_3:7862287-7862306 None:intergenic 25.0%
! ATGATTCAAATATCAGCAAA+TGG + chr1_3:7862297-7862316 None:intergenic 25.0%
! AACAAAAAAAGCTTTCTAAG+AGG + chr1_3:7862364-7862383 None:intergenic 25.0%
!!! AAATAGAGTATTTTGCTTGA+GGG + chr1_3:7862452-7862471 None:intergenic 25.0%
! TCAAGCAAAATACTCTATTT+GGG - chr1_3:7862452-7862471 Msa0101270:CDS 25.0%
! AAGAGATTTAATGGAAAGAA+AGG - chr1_3:7862684-7862703 Msa0101270:intron 25.0%
! AAAATATGACAGCAAAATCT+TGG + chr1_3:7862799-7862818 None:intergenic 25.0%
! TTGATAAAAAGTTGAATCAG+TGG + chr1_3:7862911-7862930 None:intergenic 25.0%
!! CAAAGCTGATTTAGTTAAAT+TGG - chr1_3:7863207-7863226 Msa0101270:CDS 25.0%
! GCTAATGAACAAATGAAATA+AGG + chr1_3:7863269-7863288 None:intergenic 25.0%
CAAAAAAAAAATCACAGTGG+CGG - chr1_3:7860374-7860393 Msa0101270:three_prime_UTR 30.0%
GGAAGATTGATATACCAAAT+CGG + chr1_3:7860444-7860463 None:intergenic 30.0%
AGAAGCTTCTTGTTAAATAC+TGG - chr1_3:7860585-7860604 Msa0101270:three_prime_UTR 30.0%
! TTTTACGAGATTACACGAAT+TGG - chr1_3:7860644-7860663 Msa0101270:exon 30.0%
!!! AAGAAAAAGGGTTTTGGATT+GGG + chr1_3:7860824-7860843 None:intergenic 30.0%
!! AAAGTTAGTTGATTTGCTTG+CGG - chr1_3:7860888-7860907 Msa0101270:intron 30.0%
AAGGAAAGTAAATTAGATGG+AGG - chr1_3:7861057-7861076 Msa0101270:intron 30.0%
AGGAAAGTAAATTAGATGGA+GGG - chr1_3:7861058-7861077 Msa0101270:intron 30.0%
GAAGACCTACAAAAACTAAA+TGG - chr1_3:7861107-7861126 Msa0101270:intron 30.0%
TCTACAAACAACAACAATCA+AGG + chr1_3:7861196-7861215 None:intergenic 30.0%
GAAGTGAAATGAAAGAACTA+AGG + chr1_3:7861275-7861294 None:intergenic 30.0%
AGTTCTTTCATTTCACTTCT+AGG - chr1_3:7861276-7861295 Msa0101270:CDS 30.0%
TTTGATAAAACTTAAGGAGG+CGG - chr1_3:7861323-7861342 Msa0101270:CDS 30.0%
ACATGTGAGTTAATTCTATC+AGG - chr1_3:7861357-7861376 Msa0101270:CDS 30.0%
TAAACTAGATTCTTCTTCCA+CGG + chr1_3:7861430-7861449 None:intergenic 30.0%
! GAAGAATCTAGTTTACCTAT+TGG - chr1_3:7861435-7861454 Msa0101270:intron 30.0%
TATCTCTTTCCTCAAATGTT+TGG + chr1_3:7861566-7861585 None:intergenic 30.0%
GGTTTCTTTCTTCATTGTAT+AGG - chr1_3:7861718-7861737 Msa0101270:CDS 30.0%
GAAGATAAAAGTTTCATGCA+AGG - chr1_3:7861806-7861825 Msa0101270:CDS 30.0%
TGCATACCACTAAATAGATT+TGG + chr1_3:7861981-7862000 None:intergenic 30.0%
AAATCTATTTAGTGGTATGC+AGG - chr1_3:7861980-7861999 Msa0101270:CDS 30.0%
!! ATAATGGATTTGTTGGAAAG+TGG - chr1_3:7862072-7862091 Msa0101270:CDS 30.0%
! ATCTTCCTTTTTCTGATCAA+AGG - chr1_3:7862114-7862133 Msa0101270:intron 30.0%
TTCAACCTTTGATCAGAAAA+AGG + chr1_3:7862122-7862141 None:intergenic 30.0%
! TTTTCTGATCAAAGGTTGAA+TGG - chr1_3:7862122-7862141 Msa0101270:intron 30.0%
CATCAAAGATGTAATACCTT+GGG + chr1_3:7862155-7862174 None:intergenic 30.0%
ATGAAGTATAGAAAGAGAAG+CGG + chr1_3:7862179-7862198 None:intergenic 30.0%
!! CAAATAGAGTATTTTGCTTG+AGG + chr1_3:7862453-7862472 None:intergenic 30.0%
CTCAAGCAAAATACTCTATT+TGG - chr1_3:7862451-7862470 Msa0101270:CDS 30.0%
CTGAATCAATACAGAAAAGA+TGG - chr1_3:7862648-7862667 Msa0101270:intron 30.0%
! CACATCAATAGATTAGTTAG+TGG + chr1_3:7863024-7863043 None:intergenic 30.0%
TAACTAAATCAGCTTTGCAA+TGG + chr1_3:7863204-7863223 None:intergenic 30.0%
TAAGTTAGAAAACTACAGCT+AGG + chr1_3:7863244-7863263 None:intergenic 30.0%
TTCATTAGCCAATTCAAATC+AGG - chr1_3:7863280-7863299 Msa0101270:CDS 30.0%
! CACATATACCTGATTTGAAT+TGG + chr1_3:7863291-7863310 None:intergenic 30.0%
TACCGAGTTTCTTTCGTTTA+CGG + chr1_3:7860550-7860569 None:intergenic 35.0%
TAAAAGAGTAAAAACGCAGC+TGG + chr1_3:7860629-7860648 None:intergenic 35.0%
!!! AGAAAAAGGGTTTTGGATTG+GGG + chr1_3:7860823-7860842 None:intergenic 35.0%
!!! CAAGAAAAAGGGTTTTGGAT+TGG + chr1_3:7860825-7860844 None:intergenic 35.0%
! ACTAGAATTGATTCTTGACG+CGG + chr1_3:7860949-7860968 None:intergenic 35.0%
GAGGGTAGTTAAATCTCTAA+AGG - chr1_3:7861076-7861095 Msa0101270:intron 35.0%
! AGTTAAATCTCTAAAGGCTC+CGG - chr1_3:7861082-7861101 Msa0101270:intron 35.0%
! ACTCTAGGGATTAATGAGTT+TGG - chr1_3:7861145-7861164 Msa0101270:intron 35.0%
! TCTAGTTGCTCAAGTTTTTC+AGG + chr1_3:7861402-7861421 None:intergenic 35.0%
AAACTAGATTCTTCTTCCAC+GGG + chr1_3:7861429-7861448 None:intergenic 35.0%
TACTGGAAACCAAACATTTG+AGG - chr1_3:7861554-7861573 Msa0101270:intron 35.0%
! GGAAAGAGATAGAAGTTTTG+AGG - chr1_3:7861575-7861594 Msa0101270:intron 35.0%
!!! GATAGAAGTTTTGAGGTGAT+TGG - chr1_3:7861582-7861601 Msa0101270:intron 35.0%
ATAGGTGAAAGAAACTACGA+CGG - chr1_3:7861736-7861755 Msa0101270:CDS 35.0%
GTTGTATCTACTTGTGCATT+TGG - chr1_3:7861839-7861858 Msa0101270:CDS 35.0%
GTTGAATGGTAAAATTCCCA+AGG - chr1_3:7862136-7862155 Msa0101270:intron 35.0%
GCATCAAAGATGTAATACCT+TGG + chr1_3:7862156-7862175 None:intergenic 35.0%
TGAAGTATAGAAAGAGAAGC+GGG + chr1_3:7862178-7862197 None:intergenic 35.0%
!! CTTGTGAGAACATTTTGGTA+GGG + chr1_3:7862261-7862280 None:intergenic 35.0%
!! TCTTGTGAGAACATTTTGGT+AGG + chr1_3:7862262-7862281 None:intergenic 35.0%
! GGAATCTTGTGAGAACATTT+TGG + chr1_3:7862266-7862285 None:intergenic 35.0%
! AGTATTTTGCTTGAGGGAAA+AGG + chr1_3:7862446-7862465 None:intergenic 35.0%
CCATTAAATCTCTTGTCTAC+AGG + chr1_3:7862678-7862697 None:intergenic 35.0%
CCTGTAGACAAGAGATTTAA+TGG - chr1_3:7862675-7862694 Msa0101270:intron 35.0%
AACAGACTAGATGAGAAGAT+TGG + chr1_3:7862873-7862892 None:intergenic 35.0%
!! TTTGCAATGGTTTTGCTTTG+CGG + chr1_3:7863191-7863210 None:intergenic 35.0%
! TAACCTATACCGATTATGAG+AGG + chr1_3:7863343-7863362 None:intergenic 35.0%
TTACTATGAGCTGTTTGAGT+AGG - chr1_3:7863380-7863399 Msa0101270:CDS 35.0%
! TCCAGAAAGAGATTTTGCTT+TGG - chr1_3:7863409-7863428 Msa0101270:five_prime_UTR 35.0%
TCCAAAGCAAAATCTCTTTC+TGG + chr1_3:7863413-7863432 None:intergenic 35.0%
GTTATCGTAGAAATCTGTGT+CGG + chr1_3:7863444-7863463 None:intergenic 35.0%
TCTGCGTTATCATTCCGATT+TGG - chr1_3:7860427-7860446 Msa0101270:three_prime_UTR 40.0%
! ACACGAATTGGTTTAAGACC+AGG - chr1_3:7860656-7860675 Msa0101270:CDS 40.0%
ATGTTGGAAGAAGAACTACC+TGG + chr1_3:7860677-7860696 None:intergenic 40.0%
TGTCGTTGTTGAAGCAATGT+TGG + chr1_3:7860693-7860712 None:intergenic 40.0%
!!! GAAAAAGGGTTTTGGATTGG+GGG + chr1_3:7860822-7860841 None:intergenic 40.0%
! TTTGAGAGTGTGTGTGTGTT+TGG - chr1_3:7860918-7860937 Msa0101270:intron 40.0%
! GGCGTGTAGATTTTGTAGTA+AGG - chr1_3:7861038-7861057 Msa0101270:intron 40.0%
! AGTTTTTGTAGGTCTTCCTC+CGG + chr1_3:7861104-7861123 None:intergenic 40.0%
! TTCACTTCTAGGAATGAGTG+AGG - chr1_3:7861287-7861306 Msa0101270:CDS 40.0%
!!! AGTTGCTCAAGTTTTTCAGG+TGG + chr1_3:7861399-7861418 None:intergenic 40.0%
ACTGATGCGTCTTTAATAGG+AGG - chr1_3:7861480-7861499 Msa0101270:intron 40.0%
CTGATGCGTCTTTAATAGGA+GGG - chr1_3:7861481-7861500 Msa0101270:intron 40.0%
TTTCATGCAAGGTTGCAAAG+TGG - chr1_3:7861817-7861836 Msa0101270:CDS 40.0%
GTATCTACTTGTGCATTTGG+TGG - chr1_3:7861842-7861861 Msa0101270:CDS 40.0%
GATGATCTCTATCAACCGAT+TGG - chr1_3:7861869-7861888 Msa0101270:intron 40.0%
!! AGGTTTGCTATGTAGCATTC+TGG - chr1_3:7862000-7862019 Msa0101270:CDS 40.0%
!! GGTTTGCTATGTAGCATTCT+GGG - chr1_3:7862001-7862020 Msa0101270:CDS 40.0%
! TGAAATCACACTAAAAGCGC+AGG - chr1_3:7862025-7862044 Msa0101270:CDS 40.0%
! ACTAAAAGCGCAGGAATTAG+TGG - chr1_3:7862034-7862053 Msa0101270:CDS 40.0%
! CTAAAAGCGCAGGAATTAGT+GGG - chr1_3:7862035-7862054 Msa0101270:CDS 40.0%
!! GTTGGGGATAATGGATTTGT+TGG - chr1_3:7862065-7862084 Msa0101270:CDS 40.0%
TGTTGTCTTCATTAACCCCA+TGG - chr1_3:7862329-7862348 Msa0101270:CDS 40.0%
GTTGTCTTCATTAACCCCAT+GGG - chr1_3:7862330-7862349 Msa0101270:CDS 40.0%
TTGTCTTCATTAACCCCATG+GGG - chr1_3:7862331-7862350 Msa0101270:CDS 40.0%
!!! TTTCCTTTTTCAACCACGTG+TGG - chr1_3:7862389-7862408 Msa0101270:CDS 40.0%
!!! TTCCTTTTTCAACCACGTGT+GGG - chr1_3:7862390-7862409 Msa0101270:CDS 40.0%
TAGACTCCAAGTCCCAATTT+AGG - chr1_3:7862475-7862494 Msa0101270:intron 40.0%
GTACTTGCCATATCAGAACA+TGG - chr1_3:7862546-7862565 Msa0101270:intron 40.0%
TCGTAGTAGTGTCTATGATG+AGG - chr1_3:7862572-7862591 Msa0101270:intron 40.0%
TAGTGTCTATGATGAGGCTA+AGG - chr1_3:7862578-7862597 Msa0101270:intron 40.0%
!!! CGCTTTGTTTTTCCTGACAA+CGG + chr1_3:7862604-7862623 None:intergenic 40.0%
CTAATCTATTGATGTGCGTC+TGG - chr1_3:7863028-7863047 Msa0101270:intron 40.0%
AAGGATCTGGTCAATAGCAT+GGG - chr1_3:7863159-7863178 Msa0101270:CDS 40.0%
TCTTCCTCTCCTCTCATAAT+CGG - chr1_3:7863331-7863350 Msa0101270:CDS 40.0%
! TATACCGATTATGAGAGGAG+AGG + chr1_3:7863338-7863357 None:intergenic 40.0%
TCTCCTCTCATAATCGGTAT+AGG - chr1_3:7863337-7863356 Msa0101270:CDS 40.0%
! AGTGTTGCTGTGGAACATTG+AGG + chr1_3:7860465-7860484 None:intergenic 45.0%
!! TAGTTCATCGGTTTCGTCGT+CGG + chr1_3:7860504-7860523 None:intergenic 45.0%
CGCCGTAAACGAAAGAAACT+CGG - chr1_3:7860545-7860564 Msa0101270:three_prime_UTR 45.0%
CCAGCAACAACATGAGTAGT+AGG + chr1_3:7860782-7860801 None:intergenic 45.0%
CCTACTACTCATGTTGTTGC+TGG - chr1_3:7860779-7860798 Msa0101270:CDS 45.0%
TAGTCGAGAGCAACCAATAG+TGG - chr1_3:7860965-7860984 Msa0101270:intron 45.0%
! TAAATCTCTAAAGGCTCCGG+AGG - chr1_3:7861085-7861104 Msa0101270:intron 45.0%
GCGACTGATGCGTCTTTAAT+AGG - chr1_3:7861477-7861496 Msa0101270:intron 45.0%
ATTGTCTCAATTGCGTGCAG+AGG - chr1_3:7861512-7861531 Msa0101270:intron 45.0%
! TTGCTACTTGTTTGCCCTAC+TGG - chr1_3:7861651-7861670 Msa0101270:intron 45.0%
ACAACCAAGCGTATCCAGTA+GGG + chr1_3:7861668-7861687 None:intergenic 45.0%
TACAACCAAGCGTATCCAGT+AGG + chr1_3:7861669-7861688 None:intergenic 45.0%
AAACTACGACGGCACATTGT+GGG - chr1_3:7861747-7861766 Msa0101270:CDS 45.0%
! TCTACTTGTGCATTTGGTGG+CGG - chr1_3:7861845-7861864 Msa0101270:CDS 45.0%
TCAACCGATTGGAATGTCAG+AGG - chr1_3:7861880-7861899 Msa0101270:intron 45.0%
GAAGCCTCTGACATTCCAAT+CGG + chr1_3:7861887-7861906 None:intergenic 45.0%
GTCAGAGGCTTCACTTAAGA+AGG - chr1_3:7861895-7861914 Msa0101270:intron 45.0%
! AATTAGTGGGTCGCAGAGTT+GGG - chr1_3:7862048-7862067 Msa0101270:CDS 45.0%
TGTCTTCATTAACCCCATGG+GGG - chr1_3:7862332-7862351 Msa0101270:CDS 45.0%
!! TAAGAGGAAAGTACCCCCAT+GGG + chr1_3:7862348-7862367 None:intergenic 45.0%
ACTCCAAGTCCCAATTTAGG+AGG - chr1_3:7862478-7862497 Msa0101270:intron 45.0%
CTCCAAGTCCCAATTTAGGA+GGG - chr1_3:7862479-7862498 Msa0101270:intron 45.0%
! TAGTGGGTCCCTCCTAAATT+GGG + chr1_3:7862490-7862509 None:intergenic 45.0%
ACGAGCTCCATGTTCTGATA+TGG + chr1_3:7862556-7862575 None:intergenic 45.0%
GAAAAACAAAGCGAAGCCAG+AGG - chr1_3:7862611-7862630 Msa0101270:intron 45.0%
AGTTGCACTTCAACTTCCTC+TGG + chr1_3:7862630-7862649 None:intergenic 45.0%
ATGCTTCCTGACGATAACAG+AGG + chr1_3:7862998-7863017 None:intergenic 45.0%
! GATGTGCGTCTGGTTTAATG+AGG - chr1_3:7863038-7863057 Msa0101270:intron 45.0%
TCAGCTTCCCATATGTTCTG+TGG - chr1_3:7863088-7863107 Msa0101270:CDS 45.0%
TCAACCGCCACAGAACATAT+GGG + chr1_3:7863098-7863117 None:intergenic 45.0%
TTCAACCGCCACAGAACATA+TGG + chr1_3:7863099-7863118 None:intergenic 45.0%
CAAGGATCTGGTCAATAGCA+TGG - chr1_3:7863158-7863177 Msa0101270:CDS 45.0%
!!! TATTTTGATTTAAAAAATAT+CGG + chr1_3:7863468-7863487 None:intergenic 5.0%
AGTGGCGGCAGACAGTTATA+AGG - chr1_3:7860389-7860408 Msa0101270:three_prime_UTR 50.0%
!! AGATCGGTAGAGTGTTGCTG+TGG + chr1_3:7860475-7860494 None:intergenic 50.0%
TCGTCGTCGGAGATTGAGAT+CGG + chr1_3:7860491-7860510 None:intergenic 50.0%
GACGACGAAACCGATGAACT+AGG - chr1_3:7860503-7860522 Msa0101270:three_prime_UTR 50.0%
GCGCATTCGACCTAGTTCAT+CGG + chr1_3:7860516-7860535 None:intergenic 50.0%
TGAGCAACTAGAGATTCCCG+TGG - chr1_3:7861410-7861429 Msa0101270:CDS 50.0%
TTTGCCCTACTGGATACGCT+TGG - chr1_3:7861661-7861680 Msa0101270:intron 50.0%
GAAACTACGACGGCACATTG+TGG - chr1_3:7861746-7861765 Msa0101270:CDS 50.0%
TGTGGGTTCTACAGTGCGAA+TGG - chr1_3:7861764-7861783 Msa0101270:CDS 50.0%
GGTTCTACAGTGCGAATGGT+GGG - chr1_3:7861768-7861787 Msa0101270:CDS 50.0%
!! ACAGTGCGAATGGTGGGTTT+AGG - chr1_3:7861774-7861793 Msa0101270:CDS 50.0%
! GAATTAGTGGGTCGCAGAGT+TGG - chr1_3:7862047-7862066 Msa0101270:CDS 50.0%
! ATTAGTGGGTCGCAGAGTTG+GGG - chr1_3:7862049-7862068 Msa0101270:CDS 50.0%
! GTGGCGTGTTATTGTCGTTC+AGG - chr1_3:7862091-7862110 Msa0101270:CDS 50.0%
!! AAGAGGAAAGTACCCCCATG+GGG + chr1_3:7862347-7862366 None:intergenic 50.0%
!! CTAAGAGGAAAGTACCCCCA+TGG + chr1_3:7862349-7862368 None:intergenic 50.0%
AGCCCACACGTGGTTGAAAA+AGG + chr1_3:7862395-7862414 None:intergenic 50.0%
! TTTTCAACCACGTGTGGGCT+TGG - chr1_3:7862395-7862414 Msa0101270:CDS 50.0%
AAGATATCCAAGCCCACACG+TGG + chr1_3:7862405-7862424 None:intergenic 50.0%
TTGCTTGAGGGAAAAGGCGA+TGG + chr1_3:7862440-7862459 None:intergenic 50.0%
GTCCCTCCTAAATTGGGACT+TGG + chr1_3:7862484-7862503 None:intergenic 50.0%
! CTAGTGGGTCCCTCCTAAAT+TGG + chr1_3:7862491-7862510 None:intergenic 50.0%
CAATTTAGGAGGGACCCACT+AGG - chr1_3:7862489-7862508 Msa0101270:intron 50.0%
GTACAGAACTTGTGCGCCAA+AGG + chr1_3:7862530-7862549 None:intergenic 50.0%
GTGAAGCCTCTGTTATCGTC+AGG - chr1_3:7862989-7863008 Msa0101270:intron 50.0%
! GTGCGTCTGGTTTAATGAGG+TGG - chr1_3:7863041-7863060 Msa0101270:intron 50.0%
GCTTCCCATATGTTCTGTGG+CGG - chr1_3:7863091-7863110 Msa0101270:CDS 50.0%
ATGAGAGGAGAGGAAGAGAG+AGG + chr1_3:7863328-7863347 None:intergenic 50.0%
GGGTTCTACAGTGCGAATGG+TGG - chr1_3:7861767-7861786 Msa0101270:CDS 55.0%
GGTCGCAGAGTTGGGGATAA+TGG - chr1_3:7862056-7862075 Msa0101270:CDS 55.0%
GCGCTTCCAACACACCTAGT+GGG + chr1_3:7862506-7862525 None:intergenic 55.0%
AGCGCTTCCAACACACCTAG+TGG + chr1_3:7862507-7862526 None:intergenic 55.0%
!! GTGTGTTGGAAGCGCTCCTT+TGG - chr1_3:7862511-7862530 Msa0101270:intron 55.0%
ATGAGGCTAAGGCCGTTGTC+AGG - chr1_3:7862589-7862608 Msa0101270:intron 55.0%
AGGTGGTTCGCTTCACGTCT+AGG - chr1_3:7863058-7863077 Msa0101270:CDS 55.0%
GGTGGTTCGCTTCACGTCTA+GGG - chr1_3:7863059-7863078 Msa0101270:CDS 55.0%
GATCCTTGCGAGTGCAGACA+GGG + chr1_3:7863146-7863165 None:intergenic 55.0%
AGATCCTTGCGAGTGCAGAC+AGG + chr1_3:7863147-7863166 None:intergenic 55.0%
TGTCTGCACTCGCAAGGATC+TGG - chr1_3:7863146-7863165 Msa0101270:CDS 55.0%
GAGGGACCCACTAGGTGTGT+TGG - chr1_3:7862497-7862516 Msa0101270:intron 60.0%
GTTCCCTGTCTGCACTCGCA+AGG - chr1_3:7863140-7863159 Msa0101270:CDS 60.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 7860361 7863505 7860361 ID=Msa0101270;Name=Msa0101270
chr1_3 mRNA 7860361 7863505 7860361 ID=Msa0101270-mRNA-1;Parent=Msa0101270;Name=Msa0101270-mRNA-1;_AED=0.05;_eAED=0.05;_QI=106|1|1|1|1|1|6|290|468
chr1_3 exon 7860361 7860883 7860361 ID=Msa0101270-mRNA-1:exon:3085;Parent=Msa0101270-mRNA-1
chr1_3 exon 7861161 7861437 7861161 ID=Msa0101270-mRNA-1:exon:3084;Parent=Msa0101270-mRNA-1
chr1_3 exon 7861709 7861864 7861709 ID=Msa0101270-mRNA-1:exon:3083;Parent=Msa0101270-mRNA-1
chr1_3 exon 7861950 7862126 7861950 ID=Msa0101270-mRNA-1:exon:3082;Parent=Msa0101270-mRNA-1
chr1_3 exon 7862270 7862487 7862270 ID=Msa0101270-mRNA-1:exon:3081;Parent=Msa0101270-mRNA-1
chr1_3 exon 7863054 7863505 7863054 ID=Msa0101270-mRNA-1:exon:3080;Parent=Msa0101270-mRNA-1
chr1_3 five_prime_UTR 7863400 7863505 7863400 ID=Msa0101270-mRNA-1:five_prime_utr;Parent=Msa0101270-mRNA-1
chr1_3 CDS 7863054 7863399 7863054 ID=Msa0101270-mRNA-1:cds;Parent=Msa0101270-mRNA-1
chr1_3 CDS 7862270 7862487 7862270 ID=Msa0101270-mRNA-1:cds;Parent=Msa0101270-mRNA-1
chr1_3 CDS 7861950 7862126 7861950 ID=Msa0101270-mRNA-1:cds;Parent=Msa0101270-mRNA-1
chr1_3 CDS 7861709 7861864 7861709 ID=Msa0101270-mRNA-1:cds;Parent=Msa0101270-mRNA-1
chr1_3 CDS 7861161 7861437 7861161 ID=Msa0101270-mRNA-1:cds;Parent=Msa0101270-mRNA-1
chr1_3 CDS 7860651 7860883 7860651 ID=Msa0101270-mRNA-1:cds;Parent=Msa0101270-mRNA-1
chr1_3 three_prime_UTR 7860361 7860650 7860361 ID=Msa0101270-mRNA-1:three_prime_utr;Parent=Msa0101270-mRNA-1
Gene Sequence

>Msa0101270

ATGTTCCACAGCAACACTCTACCGATCTCAATCTCCGACGACGAAACCGATGAACTAGGTCGAATGCGCGTTCGTGCTCGCCGTAAACGAAAGAAACTCGGTAACAAACGTTTCTTCAAGAAGCTTCTTGTTAAATACTGGATGCTACTCATCATTATTCCAGCTGCGTTTTTACTCTTTTACGAGATTACACGAATTGGTTTAAGACCAGGTAGTTCTTCTTCCAACATTGCTTCAACAACGACAAATCAAGATAATCATGATCATCGATCTAAAGAGACCATTGTTAAAACTAACTTGAATCGTCTTGATCCTACTACTCATGTTGTTGCTGGTGTTAGAGAACGTTGCTTGAAGCTTCTACCACCTGAAAAACTTGAGCAACTAGAGATTCCCGTGGAAGAAGAATCTAGTTTACCTATTGGTAAAGTCTTGTATATGTCAGCGACTGATGCGTCTTTAATAGGAGGGAATGCTACATTGTCTCAATTGCGTGCAGAGGATACAAGTTTTAATTTATTTACTGGAAACCAAACATTTGAGGAAAGAGATAGAAGTTTTGAGGTGAAAGAAACTACGACGGCACATTGTGGGTTCTACAGTGCGAATGGTGGGTTTAGGATATCAGATGAAGATAAAAGTTTCATGCAAGGTTGCAAAGTGGTTGTATCTACTTGTGCATTTGGTGGCGGAGATGATCTCTATCAACCGATTGGAATGTCAGAGGCTTCACTTAAGAAGGTTTGCTATGTAGCATTCTGGGATGAAATCACACTAAAAGCGCAGGAATTAGTGGGTCGCAGAGTTGGGGATAATGGATTTGTTGGAAAGTGGCGTGTTATTGTCGTTCAGGATCTTCCTTTTTCTGATCAAAGGTTGAATGGTAAAATTCCCAAGATGTTAAGCCATCGCCTTTTCCCTCAAGCAAAATACTCTATTTGGGTAGACTCCAAGTCCCAATTTAGGAGGGACCCACTAGGTGTGTTGGAAGCGCTCCTTTGGCGCACAAGTTCTGTACTTGCCATATCAGAACATGGAGCTCGTAGTAGTGTCTATGATGAGGCTAAGGCCGTTGTCAGGAAAAACAAAGCGAAGCCAGAGGAAGTTGAAGTGCAACTGAATCAATACAGAAAAGATGGCATGCCTGTAGACAAGAGATTTAATGGAAAGAAAGCTCTATGTGAAGCCTCTGTTATCGTCAGGAAGCATACGCCACTAACTAATCTATTGATGTGCGTCTGGTTTAATGAGGTGGTTCGCTTCACGTCTAGGGATCAGCTCAGCTTCCCATATGTTCTGTGGCGGTTGAAAGCATTCAAAAACATTAACATGTTCCCTGTCTGCACTCGCAAGGATCTGGTCAATAGCATGGGACACATCCGCAAAGCAAAACCATTGCAAAGCTGA

Protein sequence

>Msa0101270

MFHSNTLPISISDDETDELGRMRVRARRKRKKLGNKRFFKKLLVKYWMLLIIIPAAFLLFYEITRIGLRPGSSSSNIASTTTNQDNHDHRSKETIVKTNLNRLDPTTHVVAGVRERCLKLLPPEKLEQLEIPVEEESSLPIGKVLYMSATDASLIGGNATLSQLRAEDTSFNLFTGNQTFEERDRSFEVKETTTAHCGFYSANGGFRISDEDKSFMQGCKVVVSTCAFGGGDDLYQPIGMSEASLKKVCYVAFWDEITLKAQELVGRRVGDNGFVGKWRVIVVQDLPFSDQRLNGKIPKMLSHRLFPQAKYSIWVDSKSQFRRDPLGVLEALLWRTSSVLAISEHGARSSVYDEAKAVVRKNKAKPEEVEVQLNQYRKDGMPVDKRFNGKKALCEASVIVRKHTPLTNLLMCVWFNEVVRFTSRDQLSFPYVLWRLKAFKNINMFPVCTRKDLVNSMGHIRKAKPLQS*