AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0532610

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0532610 MtrunA17_Chr4g0006131 92.708 480 33 2 53 530 27 506 0.0 919
Msa0532610 MtrunA17_Chr4g0006111 81.303 476 86 2 52 524 49 524 0.0 805
Msa0532610 MtrunA17_Chr4g0033261 66.112 481 150 8 48 524 21 492 0.0 632
Msa0532610 MtrunA17_Chr4g0033231 64.211 475 157 9 54 524 27 492 0.0 612
Msa0532610 MtrunA17_Chr2g0329191 58.859 491 162 10 64 525 30 509 0.0 571
Msa0532610 MtrunA17_Chr2g0329201 57.545 497 172 8 58 525 21 507 0.0 567
Msa0532610 MtrunA17_Chr4g0033271 58.811 488 162 8 68 526 35 512 0.0 558
Msa0532610 MtrunA17_Chr3g0088441 56.719 506 175 9 48 524 23 513 0.0 556
Msa0532610 MtrunA17_Chr4g0033311 56.773 502 173 9 52 524 28 514 0.0 555
Msa0532610 MtrunA17_Chr4g0033201 56.237 489 175 7 67 526 35 513 0.0 555
Msa0532610 MtrunA17_Chr4g0033321 56.178 518 177 10 39 523 7 507 0.0 553
Msa0532610 MtrunA17_Chr4g0033191 57.290 487 169 9 67 524 42 518 0.0 553
Msa0532610 MtrunA17_Chr4g0033401 56.031 514 185 9 39 523 7 508 0.0 552
Msa0532610 MtrunA17_Chr6g0482131 56.531 490 174 7 68 528 36 515 0.0 550
Msa0532610 MtrunA17_Chr4g0033341 55.534 506 188 9 48 526 49 544 0.0 543
Msa0532610 MtrunA17_Chr4g0033331 54.653 505 190 7 48 523 19 513 0.0 538
Msa0532610 MtrunA17_Chr6g0482071 54.757 515 189 10 48 528 12 516 0.0 534
Msa0532610 MtrunA17_Chr6g0482081 55.714 490 179 7 68 528 36 516 0.0 520
Msa0532610 MtrunA17_Chr2g0301231 66.076 395 125 3 135 524 1 391 0.0 519
Msa0532610 MtrunA17_Chr2g0329321 52.673 505 173 11 49 524 20 487 2.22e-176 506
Msa0532610 MtrunA17_Chr4g0010501 49.704 507 210 9 47 524 3 493 1.57e-167 483
Msa0532610 MtrunA17_Chr4g0043091 47.347 490 216 7 65 524 25 502 2.13e-156 456
Msa0532610 MtrunA17_Chr5g0430451 49.806 516 172 10 54 525 26 498 3.20e-156 455
Msa0532610 MtrunA17_Chr3g0087261 48.310 503 214 9 51 523 21 507 7.13e-154 449
Msa0532610 MtrunA17_Chr3g0087271 48.200 500 216 10 52 523 24 508 1.26e-147 433
Msa0532610 MtrunA17_Chr4g0042171 43.487 499 237 8 58 524 14 499 1.43e-140 416
Msa0532610 MtrunA17_Chr3g0090111 44.328 476 234 7 67 524 18 480 1.07e-134 399
Msa0532610 MtrunA17_Chr4g0074561 43.776 482 229 11 73 523 40 510 3.20e-133 397
Msa0532610 MtrunA17_Chr3g0090131 43.697 476 238 8 67 524 20 483 2.15e-132 394
Msa0532610 MtrunA17_Chr4g0074551 44.286 490 236 8 65 527 47 526 3.17e-131 393
Msa0532610 MtrunA17_Chr2g0317841 43.299 485 235 10 67 523 31 503 6.48e-131 391
Msa0532610 MtrunA17_Chr2g0288021 42.073 492 245 10 68 530 35 515 1.01e-129 388
Msa0532610 MtrunA17_Chr2g0317821 42.887 485 237 10 67 523 31 503 4.93e-129 386
Msa0532610 MtrunA17_Chr6g0482941 42.292 506 244 12 52 527 27 514 1.84e-126 379
Msa0532610 MtrunA17_Chr2g0288071 42.570 498 248 9 58 527 57 544 9.61e-126 379
Msa0532610 MtrunA17_Chr6g0482951 40.755 503 256 10 52 527 27 514 2.07e-123 371
Msa0532610 MtrunA17_Chr7g0242691 38.048 502 262 8 51 524 14 494 5.98e-113 345
Msa0532610 MtrunA17_Chr4g0006971 40.580 483 236 8 70 523 29 489 4.33e-112 342
Msa0532610 MtrunA17_Chr7g0242681 40.082 489 241 9 65 524 35 500 1.65e-111 341
Msa0532610 MtrunA17_Chr5g0428831 38.934 488 246 9 69 527 28 492 1.53e-110 338
Msa0532610 MtrunA17_Chr1g0195611 38.934 488 245 9 69 527 28 491 2.38e-110 338
Msa0532610 MtrunA17_Chr7g0234131 41.667 480 232 13 69 523 76 532 1.03e-108 334
Msa0532610 MtrunA17_Chr7g0234111 40.748 481 240 10 69 526 76 534 2.13e-107 331
Msa0532610 MtrunA17_Chr7g0234091 40.336 476 243 9 69 523 76 531 1.25e-106 329
Msa0532610 MtrunA17_Chr3g0087201 46.064 343 142 8 211 525 17 344 9.14e-92 284
Msa0532610 MtrunA17_Chr5g0418871 47.059 306 132 5 87 364 2 305 1.39e-90 281
Msa0532610 MtrunA17_Chr1g0195641 38.832 394 195 7 70 435 29 404 2.95e-83 265
Msa0532610 MtrunA17_Chr7g0230651 38.874 373 182 7 114 462 18 368 8.35e-81 257
Msa0532610 MtrunA17_Chr3g0087191 58.896 163 66 1 49 210 3 165 3.20e-62 201
Msa0532610 MtrunA17_Chr7g0227561 37.171 304 129 7 31 311 19 283 5.34e-59 197
Msa0532610 MtrunA17_Chr7g0236731 44.196 224 103 5 156 357 28 251 2.13e-45 161
Msa0532610 MtrunA17_Chr4g0068871 27.465 426 210 13 131 528 183 537 1.24e-30 126
Msa0532610 MtrunA17_Chr5g0418861 51.111 90 43 1 435 523 1 90 5.92e-26 101
Msa0532610 MtrunA17_Chr8g0352881 42.697 89 50 1 272 359 62 150 5.86e-15 72.8
Msa0532610 MtrunA17_Chr2g0301221 57.143 63 26 1 50 111 46 108 9.95e-13 65.1
Msa0532610 MtrunA17_Chr7g0227591 46.429 56 30 0 471 526 13 68 9.40e-12 60.8
Msa0532610 MtrunA17_Chr1g0195651 51.852 54 25 1 475 527 1 54 1.06e-11 60.8
Msa0532610 MtrunA17_Chr7g0236741 37.931 58 36 0 471 528 10 67 9.10e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0532610 AT5G44640.1 46.943 507 224 9 51 527 14 505 3.57e-158 460
Msa0532610 AT2G44450.1 48.200 500 215 10 57 527 20 504 9.09e-157 457
Msa0532610 AT5G42260.1 47.667 493 213 9 57 519 20 497 2.37e-154 451
Msa0532610 AT1G26560.1 47.639 487 214 9 67 523 31 506 1.26e-150 441
Msa0532610 AT3G60130.1 45.984 498 224 8 57 524 19 501 5.40e-149 437
Msa0532610 AT2G44480.1 45.347 505 235 8 50 526 20 511 9.35e-147 432
Msa0532610 AT2G44480.3 45.347 505 235 8 50 526 51 542 2.15e-146 432
Msa0532610 AT2G25630.1 44.727 512 220 10 44 523 3 483 9.30e-146 428
Msa0532610 AT2G44490.1 44.286 490 232 8 70 527 16 496 2.75e-145 429
Msa0532610 AT5G24550.1 46.436 491 221 8 68 526 32 512 4.21e-144 426
Msa0532610 AT3G60120.1 45.219 502 223 9 60 525 6 491 4.68e-144 426
Msa0532610 AT5G54570.1 45.051 495 226 10 62 523 24 505 8.24e-144 425
Msa0532610 AT3G60140.1 45.984 498 224 10 64 528 22 507 4.98e-140 416
Msa0532610 AT5G24540.1 45.902 488 228 8 68 526 32 512 5.79e-139 412
Msa0532610 AT5G36890.2 44.842 475 232 7 69 524 17 480 4.16e-138 408
Msa0532610 AT5G36890.1 44.842 475 232 7 69 524 17 480 4.89e-138 408
Msa0532610 AT1G51470.1 45.155 485 225 10 64 523 41 509 1.96e-135 402
Msa0532610 AT1G47600.1 44.948 485 226 11 64 523 41 509 3.24e-134 399
Msa0532610 AT3G03640.1 42.857 511 248 9 49 524 12 513 9.28e-134 399
Msa0532610 AT3G18080.1 43.763 489 228 10 68 526 39 510 8.32e-133 396
Msa0532610 AT2G44460.1 45.161 496 234 7 58 524 19 505 8.63e-133 398
Msa0532610 AT1G47600.2 44.948 485 225 12 64 523 41 508 1.13e-132 395
Msa0532610 AT3G09260.1 42.449 490 244 6 65 525 32 512 2.86e-130 390
Msa0532610 AT1G75940.1 41.833 502 250 8 57 523 23 517 5.57e-130 389
Msa0532610 AT3G18070.3 43.469 490 222 12 68 527 30 494 5.35e-129 385
Msa0532610 AT2G44470.3 42.000 500 247 9 56 523 17 505 5.85e-129 389
Msa0532610 AT1G66280.1 43.737 487 233 8 67 523 35 510 9.71e-129 386
Msa0532610 AT3G18070.1 43.673 490 227 12 68 527 30 500 1.05e-128 385
Msa0532610 AT1G66270.1 43.320 494 225 10 67 523 35 510 7.17e-128 384
Msa0532610 AT2G32860.2 40.675 504 257 10 58 529 84 577 6.54e-127 384
Msa0532610 AT3G60130.2 46.118 425 185 7 129 524 40 449 1.41e-126 378
Msa0532610 AT2G32860.1 40.079 509 252 12 58 529 84 576 2.44e-126 382
Msa0532610 AT1G52400.3 41.165 515 253 11 47 524 15 516 4.98e-126 379
Msa0532610 AT1G52400.1 41.165 515 253 11 47 524 15 516 4.98e-126 379
Msa0532610 AT1G61820.1 41.889 487 244 10 69 526 31 507 5.59e-126 379
Msa0532610 AT1G66270.2 43.117 494 224 11 67 523 35 508 1.34e-125 378
Msa0532610 AT3G21370.1 42.159 491 239 11 68 524 33 512 3.33e-124 374
Msa0532610 AT5G28510.1 40.668 509 254 10 51 523 23 519 4.58e-123 372
Msa0532610 AT2G44480.2 45.346 419 192 6 135 526 1 409 1.47e-122 366
Msa0532610 AT3G60130.3 45.283 424 179 7 129 524 40 438 2.64e-122 367
Msa0532610 AT4G21760.2 41.529 484 241 11 73 529 59 527 2.84e-121 367
Msa0532610 AT5G25980.2 40.990 505 255 12 50 524 32 523 5.54e-120 364
Msa0532610 AT5G26000.1 42.094 487 238 10 68 523 38 511 2.38e-119 362
Msa0532610 AT4G21760.1 40.994 483 235 11 73 529 59 517 2.67e-118 359
Msa0532610 AT5G54570.3 42.630 441 208 9 62 470 24 451 1.06e-117 355
Msa0532610 AT5G54570.2 44.893 421 187 9 135 523 1 408 5.44e-117 353
Msa0532610 AT1G61810.1 39.754 488 255 9 68 526 33 510 9.54e-115 350
Msa0532610 AT1G02850.2 40.082 489 239 9 65 524 23 486 8.50e-113 344
Msa0532610 AT4G27830.1 38.767 503 258 10 49 523 4 484 1.04e-112 344
Msa0532610 AT5G24540.2 43.721 430 207 7 68 469 32 454 1.12e-111 340
Msa0532610 AT3G62750.1 38.477 486 254 11 57 523 14 473 1.20e-110 338
Msa0532610 AT3G62750.2 38.477 486 254 11 57 523 40 499 2.70e-110 338
Msa0532610 AT1G02850.5 38.281 512 239 9 65 524 23 509 2.49e-109 336
Msa0532610 AT1G61810.3 40.430 465 239 9 68 503 33 488 7.25e-109 335
Msa0532610 AT1G02850.4 38.207 513 239 10 65 524 23 510 1.51e-107 331
Msa0532610 AT4G27820.1 38.540 493 249 11 59 523 16 482 2.08e-107 330
Msa0532610 AT3G60140.2 46.000 400 178 9 64 434 22 412 2.35e-106 326
Msa0532610 AT1G02850.1 39.139 488 218 9 65 524 23 459 2.75e-106 326
Msa0532610 AT2G44470.1 40.449 445 223 8 56 469 17 450 1.63e-105 323
Msa0532610 AT4G22100.1 38.969 485 247 11 69 526 23 485 4.80e-104 322
Msa0532610 AT2G44450.2 46.196 368 155 9 188 527 1 353 3.34e-103 314
Msa0532610 AT3G62740.1 36.437 494 258 12 57 523 14 478 4.13e-101 314
Msa0532610 AT5G25980.3 39.644 449 230 10 50 470 32 467 1.25e-100 311
Msa0532610 AT5G25980.1 39.644 449 230 10 50 470 32 467 1.25e-100 311
Msa0532610 AT1G52400.2 39.651 459 228 10 47 469 15 460 3.56e-100 310
Msa0532610 AT1G60090.2 37.810 484 250 11 68 524 24 483 9.76e-100 310
Msa0532610 AT1G45191.4 37.888 483 245 9 69 524 30 484 4.50e-99 309
Msa0532610 AT5G26000.2 40.509 432 215 8 68 470 38 456 9.85e-99 306
Msa0532610 AT1G45191.6 37.681 483 257 9 69 524 30 495 1.12e-97 305
Msa0532610 AT1G45191.2 37.681 483 252 10 69 524 30 490 1.17e-97 305
Msa0532610 AT1G60090.1 37.143 490 252 12 68 524 24 490 2.06e-97 305
Msa0532610 AT1G45191.1 37.475 491 259 10 69 524 30 507 2.37e-96 302
Msa0532610 AT3G62750.4 37.327 434 228 10 57 472 40 447 5.79e-93 291
Msa0532610 AT2G44470.2 44.277 332 157 5 56 359 17 348 2.84e-92 288
Msa0532610 AT2G44480.4 48.101 316 134 6 50 338 51 363 8.73e-92 286
Msa0532610 AT1G61810.5 38.095 420 222 8 135 526 1 410 6.92e-88 277
Msa0532610 AT5G48375.1 38.851 435 193 12 67 488 37 411 1.27e-87 277
Msa0532610 AT4G27830.2 37.650 417 211 9 135 523 1 396 9.73e-87 274
Msa0532610 AT3G62740.2 36.574 432 219 11 57 462 14 416 3.70e-86 273
Msa0532610 AT3G62750.7 42.769 325 160 7 57 363 14 330 7.90e-86 270
Msa0532610 AT3G62750.8 42.769 325 160 7 57 363 14 330 7.90e-86 270
Msa0532610 AT1G02850.3 38.005 421 191 7 65 434 23 424 9.59e-85 269
Msa0532610 AT3G62750.3 42.769 325 160 7 57 363 40 356 1.45e-84 269
Msa0532610 AT3G18070.4 44.025 318 148 6 68 359 30 343 2.44e-84 266
Msa0532610 AT3G62750.6 36.520 408 220 9 135 523 1 388 2.38e-83 265
Msa0532610 AT3G62750.5 36.520 408 220 9 135 523 1 388 2.38e-83 265
Msa0532610 AT1G61810.4 37.626 396 209 8 68 434 33 419 4.04e-83 265
Msa0532610 AT4G27820.2 36.691 417 216 9 135 523 1 397 8.27e-82 261
Msa0532610 AT4G27820.3 36.691 417 216 9 135 523 1 397 8.27e-82 261
Msa0532610 AT1G61820.3 39.037 374 191 8 181 526 4 368 3.68e-81 258
Msa0532610 AT2G44460.2 42.663 368 173 7 186 524 1 359 7.50e-81 259
Msa0532610 AT1G60270.1 41.641 329 160 6 68 370 24 346 1.69e-76 246
Msa0532610 AT1G45191.3 41.325 317 154 5 69 359 30 340 3.15e-75 244
Msa0532610 AT1G45191.5 41.325 317 154 5 69 359 30 340 3.85e-75 244
Msa0532610 AT3G18070.2 40.580 345 160 10 213 527 94 423 4.07e-70 231
Msa0532610 AT3G18070.2 53.226 62 29 0 68 129 30 91 1.10e-15 79.7
Msa0532610 AT2G44480.5 41.135 282 153 4 248 526 34 305 2.52e-68 223
Msa0532610 AT1G51490.1 39.169 337 174 7 75 387 27 356 4.19e-67 223
Msa0532610 AT3G18070.7 43.007 286 142 8 248 527 41 311 4.84e-65 214
Msa0532610 AT1G61810.2 40.892 269 132 4 68 310 33 300 9.90e-65 213
Msa0532610 AT1G60270.2 38.434 281 136 7 135 388 1 271 7.12e-51 176
Msa0532610 AT3G18070.5 37.008 254 118 8 213 436 94 335 1.06e-37 142
Msa0532610 AT3G18070.5 53.226 62 29 0 68 129 30 91 6.85e-16 79.7
Msa0532610 AT5G16580.1 33.219 292 152 10 213 480 27 299 8.46e-35 133
Msa0532610 AT3G18070.6 38.500 200 105 6 243 436 36 223 7.12e-33 125
Msa0532610 AT3G06510.2 25.917 436 240 11 130 528 159 548 2.72e-32 131
Msa0532610 AT3G06510.1 25.995 427 217 12 130 528 159 514 3.56e-30 125

Find 141 sgRNAs with CRISPR-Local

Find 403 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTATTTAAAATGCCTAATT+TGG 0.086436 4_1:-6835387 Msa0532610:exon
CGAGATACATGGGGTGATTT+TGG 0.137457 4_1:+6828813 None:intergenic
CTTGAACATAATAGAATTAT+TGG 0.142938 4_1:-6829055 Msa0532610:CDS
CTTAAATCACCCATCTTTAT+TGG 0.149552 4_1:+6828849 None:intergenic
GATATATGCTTCAAGGAATT+TGG 0.182257 4_1:-6830588 Msa0532610:CDS
GAGCAATCTAAGAGTCTTAT+TGG 0.231240 4_1:-6830143 Msa0532610:CDS
ACTGTTAATGTGACTTTAAC+AGG 0.248704 4_1:-6830002 Msa0532610:intron
GGGGAAGATCCCAATGAAAA+AGG 0.264707 4_1:+6831148 None:intergenic
CAGGCTCAAAATGGTATAAT+AGG 0.277472 4_1:-6830432 Msa0532610:CDS
ACGATTATCATAACAGAAAA+TGG 0.280720 4_1:-6829678 Msa0532610:intron
CAAAGCTCACGCAGTATTAT+TGG 0.285995 4_1:+6829010 None:intergenic
CAATAAAGATGGGTGATTTA+AGG 0.286150 4_1:-6828848 Msa0532610:three_prime_UTR
ATACTTTGCATGGTCCCTTT+TGG 0.290939 4_1:-6829191 Msa0532610:CDS
TACAAAACGTACCTGGTAAT+TGG 0.306037 4_1:+6833331 None:intergenic
AGCTCTCTGCCCGGTGGTTT+AGG 0.309537 4_1:-6829084 Msa0532610:CDS
GACGGATACACTGTGCGTTT+TGG 0.311280 4_1:-6829151 Msa0532610:CDS
GACGCCCTTGATTTCATGTT+TGG 0.322541 4_1:-6830342 Msa0532610:CDS
ATGTTTGTCCAAAGGGGATT+CGG 0.336791 4_1:-6829740 Msa0532610:CDS
TGTGGTCTCTTTCTCTTTGA+AGG 0.337983 4_1:+6835345 None:intergenic
TCAAAACTAATATATTTGTT+GGG 0.339637 4_1:+6834530 None:intergenic
TTCAAAACTAATATATTTGT+TGG 0.339948 4_1:+6834529 None:intergenic
ACCACATATCAGGCTCAAAA+TGG 0.345183 4_1:-6830441 Msa0532610:CDS
TTCTTGTTTCGCTCAGGTCT+TGG 0.348865 4_1:-6828665 Msa0532610:three_prime_UTR
TCTAATGGGTCAGTTGAGTA+TGG 0.349718 4_1:+6830381 None:intergenic
CATGAAATCAAGGGCGTCTT+CGG 0.355937 4_1:+6830347 None:intergenic
GCAGTGAACGTTGGTAAATC+TGG 0.366493 4_1:+6830167 None:intergenic
TTCTTCTTCACCAATAAAGA+TGG 0.379167 4_1:-6828859 Msa0532610:three_prime_UTR
TGATCACTATCATCGTTATA+AGG 0.379609 4_1:-6831722 Msa0532610:intron
CAATATCCTTGGCCAAGATA+TGG 0.382965 4_1:+6831439 None:intergenic
GATCCAGACTGTATAGGAAT+TGG 0.386737 4_1:+6830059 None:intergenic
AGGCAAGGTGTGAATGTAAA+AGG 0.387936 4_1:-6829214 Msa0532610:CDS
CTATTACTTGGCAATATCCT+TGG 0.390771 4_1:+6831428 None:intergenic
CGTCCTCCACGTTGCAGATC+CGG 0.395060 4_1:-6828584 Msa0532610:three_prime_UTR
TGTTTGTCCAAAGGGGATTC+GGG 0.400286 4_1:-6829739 Msa0532610:CDS
TCCATTCAAAGTTGTCCAAA+AGG 0.405927 4_1:+6829176 None:intergenic
TGGCTATATGTTTGTCCAAA+GGG 0.410402 4_1:-6829747 Msa0532610:CDS
CATACAGATTCTCCATATCT+TGG 0.418726 4_1:-6831451 Msa0532610:CDS
GCATGTATGTACCTGGTGTA+TGG 0.422731 4_1:+6832468 None:intergenic
GTGGTCTCTTTCTCTTTGAA+GGG 0.424614 4_1:+6835346 None:intergenic
TTTATACAGCCGCTAACAAC+AGG 0.426920 4_1:-6830221 Msa0532610:CDS
ATACTCATCTTGTAAGGCCT+GGG 0.427696 4_1:+6831128 None:intergenic
ATCAATGAGCTACTTGCTAA+TGG 0.429019 4_1:-6831264 Msa0532610:intron
CAGGCCTTACAAGATGAGTA+TGG 0.435383 4_1:-6831126 Msa0532610:CDS
GCATAAATAGAGGCAATAAC+AGG 0.437739 4_1:+6833416 None:intergenic
ATTGTATAAAACCACATATC+AGG 0.437772 4_1:-6830451 Msa0532610:CDS
ACATAAGACACCAAGCTTGC+TGG 0.447607 4_1:+6830191 None:intergenic
AACCACCGGGCAGAGAGCTT+AGG 0.450563 4_1:+6829088 None:intergenic
TTGCCTTTCTTGTTTCGCTC+AGG 0.451091 4_1:-6828671 Msa0532610:three_prime_UTR
ATCATTGATTGAATCTGCAT+TGG 0.451649 4_1:+6828612 None:intergenic
CATACTCATCTTGTAAGGCC+TGG 0.455210 4_1:+6831127 None:intergenic
AGTAGGTCCCGAATCCCCTT+TGG 0.457019 4_1:+6829732 None:intergenic
ATGACAGATAAGAATAAAGA+TGG 0.458312 4_1:-6829869 Msa0532610:intron
CCGCCTGATCCAGACTGTAT+AGG 0.458956 4_1:+6830053 None:intergenic
TAGCAAGTAGCTCATTGATC+AGG 0.461889 4_1:+6831268 None:intergenic
ACACTTTGAATACATCAGAT+TGG 0.462336 4_1:-6830521 Msa0532610:CDS
TCTGTTGAAAGCTCCAAATT+AGG 0.471746 4_1:+6835374 None:intergenic
ACCATCCAAACATGAAATCA+AGG 0.473106 4_1:+6830337 None:intergenic
CTTCGTGGATATATGCTTCA+AGG 0.473903 4_1:-6830595 Msa0532610:CDS
ACCACCGGGCAGAGAGCTTA+GGG 0.475465 4_1:+6829089 None:intergenic
ATCACTCGAAGAGGCGCTCA+TGG 0.478154 4_1:-6829409 Msa0532610:CDS
TCGTCAAGTACGGTGCAATC+AGG 0.479472 4_1:-6835312 Msa0532610:intron
TTGGAGACAGAGTAAAGCAT+TGG 0.480355 4_1:-6830569 Msa0532610:CDS
AATAAAGATGGGACATACAT+TGG 0.483048 4_1:-6829857 Msa0532610:CDS
ATTCCTATACAGTCTGGATC+AGG 0.483543 4_1:-6830056 Msa0532610:CDS
CAAAATGGTATAATAGGCAT+TGG 0.486147 4_1:-6830426 Msa0532610:CDS
GCATTGGATTAAACTCTCAC+TGG 0.490284 4_1:-6830410 Msa0532610:CDS
AGCAATCTAAGAGTCTTATT+GGG 0.490733 4_1:-6830142 Msa0532610:CDS
ACGGAAGAGGAGTTGGTACA+TGG 0.493857 4_1:-6832502 Msa0532610:CDS
GCCTCCATACTCATCTTGTA+AGG 0.497866 4_1:+6831122 None:intergenic
CCATTCAAAGTTGTCCAAAA+GGG 0.499789 4_1:+6829177 None:intergenic
CCCTTGATTTCATGTTTGGA+TGG 0.504970 4_1:-6830338 Msa0532610:intron
TGGAGACAGAGTAAAGCATT+GGG 0.508305 4_1:-6830568 Msa0532610:CDS
TCTGGATCAGGCGGCGCTGA+CGG 0.508743 4_1:-6830044 Msa0532610:CDS
CAGCTGCATGAGCAAGAAGT+TGG 0.509222 4_1:+6830481 None:intergenic
AGGAATTGGTTTCGTTGCAT+TGG 0.510612 4_1:+6830073 None:intergenic
AAACCAATTCCTATACAGTC+TGG 0.511299 4_1:-6830062 Msa0532610:CDS
AGGCTACCCCTTGTATATGA+AGG 0.511583 4_1:+6834560 None:intergenic
AAAGAGAAAGAGACCACATT+CGG 0.513482 4_1:-6835340 Msa0532610:CDS
TCTTCTTCACCAATAAAGAT+GGG 0.518439 4_1:-6828858 Msa0532610:three_prime_UTR
AAAACTGTCAGCATAAATAG+AGG 0.520509 4_1:+6833406 None:intergenic
AAAATAACGTTATAAAGTTG+AGG 0.524408 4_1:+6835429 None:intergenic
AGGAAAGTATCCAGCAAGCT+TGG 0.526086 4_1:-6830201 Msa0532610:CDS
GACAACTTTGAATGGAATGA+CGG 0.527539 4_1:-6829169 Msa0532610:CDS
TGGTCTCTTTCTCTTTGAAG+GGG 0.531186 4_1:+6835347 None:intergenic
TCATATACAAGGGGTAGCCT+TGG 0.533634 4_1:-6834557 Msa0532610:CDS
GGATACTTTCCTGTTGTTAG+CGG 0.535598 4_1:+6830212 None:intergenic
AGACCTGAGCGAAACAAGAA+AGG 0.536233 4_1:+6828668 None:intergenic
TACTGGCTCCTCCAATTACC+AGG 0.536244 4_1:-6833342 Msa0532610:intron
GAAGTTGGTTGTGTGTGGCC+TGG 0.537777 4_1:+6830496 None:intergenic
CAAAACTAATATATTTGTTG+GGG 0.538019 4_1:+6834531 None:intergenic
AATATGTGCAGGCTGCAACT+TGG 0.539391 4_1:-6829767 Msa0532610:intron
GGAGTAGCCCTTCATATACA+AGG 0.544708 4_1:-6834568 Msa0532610:CDS
CAAGAAACTTCCTAAACCAC+CGG 0.545200 4_1:+6829074 None:intergenic
TTGGCTATATGTTTGTCCAA+AGG 0.547740 4_1:-6829748 Msa0532610:CDS
TTTCCTTTGTGTACAACAGT+AGG 0.554600 4_1:+6829715 None:intergenic
TATATTTGTTGGGGTAGCCA+AGG 0.558774 4_1:+6834540 None:intergenic
AGTGAAGACGGAAGAGGAGT+TGG 0.562292 4_1:-6832509 Msa0532610:CDS
GCTGTAAGTGAAGACGGAAG+AGG 0.566324 4_1:-6832515 Msa0532610:CDS
GGTCTCTTTCTCTTTGAAGG+GGG 0.568914 4_1:+6835348 None:intergenic
GTATTCAAAGTGTAAGAGAA+TGG 0.570526 4_1:+6830531 None:intergenic
GATTCTCCATATCTTGGCCA+AGG 0.571513 4_1:-6831445 Msa0532610:CDS
GACACCCTAAGCTCTCTGCC+CGG 0.573913 4_1:-6829093 Msa0532610:CDS
ACTGCATACAGGGATGGTAA+AGG 0.575949 4_1:-6831770 Msa0532610:intron
CTTGACGATATTTCCGAATG+TGG 0.577303 4_1:+6835327 None:intergenic
GAAGGTGCTGTAAGTGAAGA+CGG 0.577558 4_1:-6832521 Msa0532610:CDS
GTGTTGATAATGTAGTATGA+AGG 0.577599 4_1:-6832539 Msa0532610:intron
GGCTACCCCTTGTATATGAA+GGG 0.581176 4_1:+6834561 None:intergenic
TGGGACATACATTGGAGCAT+GGG 0.581493 4_1:-6829849 Msa0532610:intron
ATGGGACATACATTGGAGCA+TGG 0.582897 4_1:-6829850 Msa0532610:CDS
CATGTATGTACCTGGTGTAT+GGG 0.583731 4_1:+6832469 None:intergenic
TGTAAAATATGATTCCTGCT+TGG 0.587277 4_1:+6831295 None:intergenic
TTCGGAAATATCGTCAAGTA+CGG 0.592831 4_1:-6835322 Msa0532610:CDS
GTGTGTTTGTCGTCTTTGTG+TGG 0.592863 4_1:-6828700 Msa0532610:three_prime_UTR
AGCTCACGCAGTATTATTGG+TGG 0.595746 4_1:+6829013 None:intergenic
GAATACATCAGATTGGTACC+AGG 0.597455 4_1:-6830514 Msa0532610:CDS
AAAACGTACCTGGTAATTGG+AGG 0.599628 4_1:+6833334 None:intergenic
GATATATTTGCCCATACACC+AGG 0.601896 4_1:-6832479 Msa0532610:intron
GATTGCTCTGCAGTGAACGT+TGG 0.602380 4_1:+6830158 None:intergenic
GGCTATATGTTTGTCCAAAG+GGG 0.602874 4_1:-6829746 Msa0532610:CDS
CATACAGGGATGGTAAAGGA+TGG 0.607856 4_1:-6831766 Msa0532610:intron
TGACAGATAAGAATAAAGAT+GGG 0.612129 4_1:-6829868 Msa0532610:intron
GAGTAGCCCTTCATATACAA+GGG 0.612888 4_1:-6834567 Msa0532610:CDS
CGGAAGAGGAGTTGGTACAT+GGG 0.619563 4_1:-6832501 Msa0532610:CDS
ATGTAAAAGGATACTTTGCA+TGG 0.622027 4_1:-6829201 Msa0532610:CDS
TCCAACACTATCACTCGAAG+AGG 0.624433 4_1:-6829418 Msa0532610:CDS
AGTGGCGGTGTAAACCAAGC+AGG 0.626808 4_1:-6831309 Msa0532610:CDS
AGCAAGAAGTTGGTTGTGTG+TGG 0.636210 4_1:+6830491 None:intergenic
CCATCCAAACATGAAATCAA+GGG 0.640294 4_1:+6830338 None:intergenic
TACTCATCTTGTAAGGCCTG+GGG 0.645812 4_1:+6831129 None:intergenic
GCCTCTTCGAGTGATAGTGT+TGG 0.646940 4_1:+6829417 None:intergenic
TGCATTGGCAGCATACATGC+TGG 0.650774 4_1:+6830088 None:intergenic
CCTATACAGTCTGGATCAGG+CGG 0.652705 4_1:-6830053 Msa0532610:CDS
TATGCAGAAGGAAAACTAAG+TGG 0.653344 4_1:-6831327 Msa0532610:intron
AAGAAACTTCCTAAACCACC+GGG 0.661886 4_1:+6829075 None:intergenic
GGACCTACTGTTGTACACAA+AGG 0.673741 4_1:-6829718 Msa0532610:CDS
TCTCCGGATCTGCAACGTGG+AGG 0.682726 4_1:+6828581 None:intergenic
ACCCTAAGCTCTCTGCCCGG+TGG 0.683098 4_1:-6829090 Msa0532610:CDS
GCAGAAGGAAAACTAAGTGG+CGG 0.686824 4_1:-6831324 Msa0532610:intron
GCCTTACAAGATGAGTATGG+AGG 0.687554 4_1:-6831123 Msa0532610:CDS
AGTAGCCCTTCATATACAAG+GGG 0.694655 4_1:-6834566 Msa0532610:CDS
ATGTCTCCGGATCTGCAACG+TGG 0.714078 4_1:+6828578 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAGCAAAAATATATTTA+AGG + chr4_1:6828806-6828825 None:intergenic 10.0%
!!! TTAAATATATTTTTGCTTTT+TGG - chr4_1:6828805-6828824 Msa0532610:three_prime_UTR 10.0%
!! AAATAAAGAAAACAAATAAT+GGG + chr4_1:6829293-6829312 None:intergenic 10.0%
!! AAAATAAAGAAAACAAATAA+TGG + chr4_1:6829294-6829313 None:intergenic 10.0%
!!! ATTATTTGTTTTCTTTATTT+TGG - chr4_1:6829293-6829312 Msa0532610:intron 10.0%
!!! ATTGAATAAATTTTATTTAG+AGG - chr4_1:6830092-6830111 Msa0532610:CDS 10.0%
!!! TTTATTCTTTTATTTATAGT+TGG - chr4_1:6830169-6830188 Msa0532610:CDS 10.0%
!! CATTTAAATGAAAAAAAATT+GGG + chr4_1:6830234-6830253 None:intergenic 10.0%
!! ACATTTAAATGAAAAAAAAT+TGG + chr4_1:6830235-6830254 None:intergenic 10.0%
!!! TAAAAATATTTTATTGTTCT+TGG + chr4_1:6830546-6830565 None:intergenic 10.0%
!!! ATTTCTTTAATGTTTATTTT+AGG - chr4_1:6830596-6830615 Msa0532610:CDS 10.0%
!!! TTTCTTTAATGTTTATTTTA+GGG - chr4_1:6830597-6830616 Msa0532610:CDS 10.0%
!! AAATAGATAAAAAAAATTGA+AGG + chr4_1:6831850-6831869 None:intergenic 10.0%
!!! TTCAATTTTTTTTATCTATT+TGG - chr4_1:6831849-6831868 Msa0532610:intron 10.0%
!!! ATATATTTTATTTACACTAT+CGG + chr4_1:6832063-6832082 None:intergenic 10.0%
!! AAAAAAGATTTCAAATTATA+CGG + chr4_1:6833788-6833807 None:intergenic 10.0%
!! TTCTAATAAATTTAAATCAT+AGG - chr4_1:6834583-6834602 Msa0532610:intron 10.0%
!!! ATCACTTATTTTATTAAAAA+AGG + chr4_1:6835266-6835285 None:intergenic 10.0%
!!! TTATTTTTGCCTTTTTAATA+GGG + chr4_1:6829163-6829182 None:intergenic 15.0%
!!! TTTATTTTTGCCTTTTTAAT+AGG + chr4_1:6829164-6829183 None:intergenic 15.0%
!! AAAATAAAGAAAACAAAGAA+AGG - chr4_1:6829176-6829195 Msa0532610:CDS 15.0%
!! TCAAAACTAATATATTTGTT+GGG + chr4_1:6829515-6829534 None:intergenic 15.0%
!! TTCAAAACTAATATATTTGT+TGG + chr4_1:6829516-6829535 None:intergenic 15.0%
!!! TATATTAGTTTTGAATTAGT+TGG - chr4_1:6829521-6829540 Msa0532610:intron 15.0%
!! ATAGTCATAAACATATTAAA+TGG - chr4_1:6829739-6829758 Msa0532610:CDS 15.0%
!! TAGTCATAAACATATTAAAT+GGG - chr4_1:6829740-6829759 Msa0532610:CDS 15.0%
!! CAATCAATTATAGATAAAAT+TGG - chr4_1:6829830-6829849 Msa0532610:intron 15.0%
!!! CAATAACTATTTTAAAAAGT+TGG + chr4_1:6829876-6829895 None:intergenic 15.0%
!!! TAAGGATAAAATACTTTTTT+AGG + chr4_1:6830123-6830142 None:intergenic 15.0%
!!! TTCTTTAATGTTTATTTTAG+GGG - chr4_1:6830598-6830617 Msa0532610:CDS 15.0%
!!! GGAATTAAACATAATTTTTT+TGG + chr4_1:6830814-6830833 None:intergenic 15.0%
!! TATGTATCTGATTTATATTA+TGG - chr4_1:6831408-6831427 Msa0532610:intron 15.0%
!! TATTATTGAATCTTAAGAAT+TGG - chr4_1:6831452-6831471 Msa0532610:CDS 15.0%
!!! AAATAATTTTAGTGATCAAA+AGG - chr4_1:6832426-6832445 Msa0532610:intron 15.0%
!!! ATTAAACATTTTCTATTACT+TGG + chr4_1:6832629-6832648 None:intergenic 15.0%
!! GTAATAGAAAATGTTTAATT+TGG - chr4_1:6832630-6832649 Msa0532610:intron 15.0%
!! TATGATATACTAATAAAGTA+TGG + chr4_1:6832818-6832837 None:intergenic 15.0%
!! TTCATAATAATACAAATTGA+TGG - chr4_1:6832838-6832857 Msa0532610:intron 15.0%
!! ATTCAAGAAATAATAAATTG+AGG - chr4_1:6833349-6833368 Msa0532610:CDS 15.0%
!! AAAATAACGTTATAAAGTTG+AGG + chr4_1:6828616-6828635 None:intergenic 20.0%
!!! TTAGGCATTTTAAATAGTTA+TGG + chr4_1:6828653-6828672 None:intergenic 20.0%
!!! ACTATTTAAAATGCCTAATT+TGG - chr4_1:6828655-6828674 Msa0532610:three_prime_UTR 20.0%
!! AGTTTCTATATTGTAACATT+AGG - chr4_1:6828938-6828957 Msa0532610:three_prime_UTR 20.0%
!!! TATTGTTTCATTCTTGTTTT+CGG - chr4_1:6829044-6829063 Msa0532610:exon 20.0%
!! TTATTAGAACCCTATTAAAA+AGG - chr4_1:6829151-6829170 Msa0532610:CDS 20.0%
!!! CAAAACTAATATATTTGTTG+GGG + chr4_1:6829514-6829533 None:intergenic 20.0%
!! AATAATCTATCTGTTTACAT+TGG - chr4_1:6829779-6829798 Msa0532610:intron 20.0%
!!! TAAAAAAGTGTTTTTAGTCT+TGG + chr4_1:6830045-6830064 None:intergenic 20.0%
!! CATAAAAAAAAATACCTTGA+AGG - chr4_1:6830352-6830371 Msa0532610:CDS 20.0%
!!! TGTAATACATGTTTTTTCTT+TGG + chr4_1:6830854-6830873 None:intergenic 20.0%
!! TTACATAAAGAGAAATTCTT+AGG - chr4_1:6830869-6830888 Msa0532610:intron 20.0%
!! TTATTTAAGAAATGGAAACT+GGG + chr4_1:6831192-6831211 None:intergenic 20.0%
!! TTTATTTAAGAAATGGAAAC+TGG + chr4_1:6831193-6831212 None:intergenic 20.0%
!! TATTACTTTCTCTAAATTTC+TGG + chr4_1:6831332-6831351 None:intergenic 20.0%
!!! TCTTTTCTTATATTTTAGAC+CGG + chr4_1:6831361-6831380 None:intergenic 20.0%
!!! TAGTTTTATTGATACTATCT+AGG - chr4_1:6831633-6831652 Msa0532610:intron 20.0%
!! TAAAAAAAATTGAAGGTCTT+GGG + chr4_1:6831843-6831862 None:intergenic 20.0%
!! ATAAAAAAAATTGAAGGTCT+TGG + chr4_1:6831844-6831863 None:intergenic 20.0%
!! TATAGACTGATTATAATTGA+GGG + chr4_1:6831879-6831898 None:intergenic 20.0%
!! ATATAGACTGATTATAATTG+AGG + chr4_1:6831880-6831899 None:intergenic 20.0%
!!! ATATAAATCATCTGAAACTT+TGG + chr4_1:6831931-6831950 None:intergenic 20.0%
!!! TTTTCTTCTAATGTAGTAAT+TGG - chr4_1:6832245-6832264 Msa0532610:intron 20.0%
!! GAAATTATATATCACATTAG+AGG + chr4_1:6832348-6832367 None:intergenic 20.0%
!!! AACCATTTTTACATCTTAAT+AGG - chr4_1:6832532-6832551 Msa0532610:intron 20.0%
!! TTCCTATTAAGATGTAAAAA+TGG + chr4_1:6832537-6832556 None:intergenic 20.0%
!!! AATCTTTTTTATCTGTTTAC+AGG - chr4_1:6833798-6833817 Msa0532610:intron 20.0%
!! AAAACAATTTATGTCAAACA+AGG + chr4_1:6834141-6834160 None:intergenic 20.0%
!! TTCTGATTTAAGTAAATAGA+GGG + chr4_1:6834723-6834742 None:intergenic 20.0%
!! ATTCTGATTTAAGTAAATAG+AGG + chr4_1:6834724-6834743 None:intergenic 20.0%
!!! TTGACTATATTGTTGTTTTT+TGG - chr4_1:6834793-6834812 Msa0532610:intron 20.0%
!! CTTGAACATAATAGAATTAT+TGG - chr4_1:6834987-6835006 Msa0532610:intron 20.0%
!!! ATTGTTTCATTCTTGTTTTC+GGG - chr4_1:6829045-6829064 Msa0532610:exon 25.0%
!! AATAGGGTTCTAATAAAAAG+AGG + chr4_1:6829147-6829166 None:intergenic 25.0%
! ATAAAGAAAACAAAGAAAGG+TGG - chr4_1:6829179-6829198 Msa0532610:CDS 25.0%
!!! AACAAGTTGATAATCCAAAT+CGG + chr4_1:6829249-6829268 None:intergenic 25.0%
!!! TTTATTTTGGCCTTTTTAAG+AGG - chr4_1:6829306-6829325 Msa0532610:intron 25.0%
!!! TTATTTTGGCCTTTTTAAGA+GGG - chr4_1:6829307-6829326 Msa0532610:intron 25.0%
! TAGATTTAGTTGTAATTGTC+TGG - chr4_1:6829654-6829673 Msa0532610:intron 25.0%
! TATCCTTAAGTTTACTATGT+TGG - chr4_1:6830135-6830154 Msa0532610:CDS 25.0%
! AAACCAACATAGTAAACTTA+AGG + chr4_1:6830141-6830160 None:intergenic 25.0%
! AAATAGAACATTGGAAGAAA+TGG + chr4_1:6830265-6830284 None:intergenic 25.0%
! CGAAAGAAAAAATAGAACAT+TGG + chr4_1:6830274-6830293 None:intergenic 25.0%
! AATTTGAAAATGAACCTTCA+AGG + chr4_1:6830369-6830388 None:intergenic 25.0%
! ATCTTAGTAATAAGTGATCA+TGG + chr4_1:6830397-6830416 None:intergenic 25.0%
!!! TTTAATGTTTATTTTAGGGG+CGG - chr4_1:6830601-6830620 Msa0532610:CDS 25.0%
!!! TATGCTTTTGCTTTTTGTAA+TGG - chr4_1:6830781-6830800 Msa0532610:intron 25.0%
! AATTCCTAATGCTATAAGAT+TGG - chr4_1:6830828-6830847 Msa0532610:intron 25.0%
! TTGAGAAAGAATGATATGTT+GGG + chr4_1:6830905-6830924 None:intergenic 25.0%
! ATTGAGAAAGAATGATATGT+TGG + chr4_1:6830906-6830925 None:intergenic 25.0%
!! AAACTTTTCAGTTTTTGCTT+TGG - chr4_1:6830946-6830965 Msa0532610:intron 25.0%
!! AACTTTTCAGTTTTTGCTTT+GGG - chr4_1:6830947-6830966 Msa0532610:intron 25.0%
!!! AATATGTGTCACGTTTTAAT+TGG - chr4_1:6831237-6831256 Msa0532610:intron 25.0%
! TATTGAATCTTAAGAATTGG+AGG - chr4_1:6831455-6831474 Msa0532610:CDS 25.0%
!!! TTAGAGTTTGTTAATGCATA+TGG + chr4_1:6832691-6832710 None:intergenic 25.0%
!! AGAGAAAGATTAGAATGTTT+TGG - chr4_1:6833010-6833029 Msa0532610:intron 25.0%
! TAACTAACTAGTTAGTTAGT+TGG + chr4_1:6833243-6833262 None:intergenic 25.0%
! ATTCTAATGTTAGTTAGTTG+TGG + chr4_1:6833303-6833322 None:intergenic 25.0%
!! AATATGCAGAGATGATTTTA+AGG - chr4_1:6833423-6833442 Msa0532610:CDS 25.0%
! ATTGTATAAAACCACATATC+AGG - chr4_1:6833591-6833610 Msa0532610:intron 25.0%
!! ATTGGGTCATATGATTTTAT+TGG - chr4_1:6833917-6833936 Msa0532610:intron 25.0%
!! GTTTGACATAAATTGTTTTC+TGG - chr4_1:6834142-6834161 Msa0532610:intron 25.0%
! ATGACAGATAAGAATAAAGA+TGG - chr4_1:6834173-6834192 Msa0532610:intron 25.0%
! TGACAGATAAGAATAAAGAT+GGG - chr4_1:6834174-6834193 Msa0532610:intron 25.0%
!! TTTTCTGTTATGATAATCGT+AGG + chr4_1:6834364-6834383 None:intergenic 25.0%
! ACGATTATCATAACAGAAAA+TGG - chr4_1:6834364-6834383 Msa0532610:intron 25.0%
! GTTTATTAGACACTGAAAAA+AGG + chr4_1:6834550-6834569 None:intergenic 25.0%
!! ATTATCTTTTATCTGCAATG+AGG - chr4_1:6834692-6834711 Msa0532610:intron 25.0%
!!! TTTTTTGGTTTTTTGTGTGA+AGG - chr4_1:6834808-6834827 Msa0532610:intron 25.0%
TAGACCAAAATTCTCTTCAA+TGG - chr4_1:6828877-6828896 Msa0532610:three_prime_UTR 30.0%
! AACTCCATTGAAGAGAATTT+TGG + chr4_1:6828884-6828903 None:intergenic 30.0%
! TCTTCAATGGAGTTTTCTAA+GGG - chr4_1:6828890-6828909 Msa0532610:three_prime_UTR 30.0%
CTTCATTGAGAAGAATTTGA+AGG + chr4_1:6828920-6828939 None:intergenic 30.0%
TCATCCATAAACATCAAATG+TGG + chr4_1:6829021-6829040 None:intergenic 30.0%
!!! TTGTTTCATTCTTGTTTTCG+GGG - chr4_1:6829046-6829065 Msa0532610:exon 30.0%
AAACCAAAACCCTCTTAAAA+AGG + chr4_1:6829319-6829338 None:intergenic 30.0%
! TCTATAGTTGTTATTGCGAT+TGG + chr4_1:6829685-6829704 None:intergenic 30.0%
AAAACTGTCAGCATAAATAG+AGG + chr4_1:6830639-6830658 None:intergenic 30.0%
!!! AATTTTGATTTCCTCGTAAG+AGG - chr4_1:6831031-6831050 Msa0532610:intron 30.0%
TTAAGTTTCACCATTGTTAG+AGG - chr4_1:6831127-6831146 Msa0532610:CDS 30.0%
AGATGTAAGAATGATGTGTT+GGG - chr4_1:6831262-6831281 Msa0532610:intron 30.0%
AGAGAAAGTAATACTTCTTC+CGG - chr4_1:6831339-6831358 Msa0532610:intron 30.0%
!! GTGTTGATAATGTAGTATGA+AGG - chr4_1:6831503-6831522 Msa0532610:intron 30.0%
AGAGTTTATAGACAAGTCAT+AGG - chr4_1:6831985-6832004 Msa0532610:intron 30.0%
TGATCACTATCATCGTTATA+AGG - chr4_1:6832320-6832339 Msa0532610:intron 30.0%
AACTCTAACAAATATGCAGA+AGG - chr4_1:6832703-6832722 Msa0532610:intron 30.0%
TGTAAAATATGATTCCTGCT+TGG + chr4_1:6832750-6832769 None:intergenic 30.0%
ATTGATGGAATTATTGATCC+AGG - chr4_1:6832853-6832872 Msa0532610:intron 30.0%
!! ATATGTGACCCTTTTTCATT+GGG - chr4_1:6832885-6832904 Msa0532610:intron 30.0%
! CTTTAGAGAGAAAACTACAA+AGG - chr4_1:6833084-6833103 Msa0532610:intron 30.0%
AAATCAACTATGTTGTTGGT+TGG + chr4_1:6833278-6833297 None:intergenic 30.0%
GGATAAATCAACTATGTTGT+TGG + chr4_1:6833282-6833301 None:intergenic 30.0%
GATATATGCTTCAAGGAATT+TGG - chr4_1:6833454-6833473 Msa0532610:intron 30.0%
GTATTCAAAGTGTAAGAGAA+TGG + chr4_1:6833514-6833533 None:intergenic 30.0%
ACACTTTGAATACATCAGAT+TGG - chr4_1:6833521-6833540 Msa0532610:intron 30.0%
CAAAATGGTATAATAGGCAT+TGG - chr4_1:6833616-6833635 Msa0532610:intron 30.0%
!! AGCAATCTAAGAGTCTTATT+GGG - chr4_1:6833900-6833919 Msa0532610:intron 30.0%
ACTGTTAATGTGACTTTAAC+AGG - chr4_1:6834040-6834059 Msa0532610:intron 30.0%
AATAAAGATGGGACATACAT+TGG - chr4_1:6834185-6834204 Msa0532610:intron 30.0%
AACAACTAAACAATATGTGC+AGG - chr4_1:6834264-6834283 Msa0532610:intron 30.0%
ATGTAAAAGGATACTTTGCA+TGG - chr4_1:6834841-6834860 Msa0532610:intron 30.0%
! AGAAAGTAGAATTTTGCTGA+CGG + chr4_1:6835161-6835180 None:intergenic 30.0%
TTCTTCTTCACCAATAAAGA+TGG - chr4_1:6835183-6835202 Msa0532610:intron 30.0%
TCTTCTTCACCAATAAAGAT+GGG - chr4_1:6835184-6835203 Msa0532610:intron 30.0%
CTTAAATCACCCATCTTTAT+TGG + chr4_1:6835196-6835215 None:intergenic 30.0%
CAATAAAGATGGGTGATTTA+AGG - chr4_1:6835194-6835213 Msa0532610:intron 30.0%
AAGAGAAAAACGAGATACAT+GGG + chr4_1:6835242-6835261 None:intergenic 30.0%
AAAGAGAAAAACGAGATACA+TGG + chr4_1:6835243-6835262 None:intergenic 30.0%
! ATCATTGATTGAATCTGCAT+TGG + chr4_1:6835433-6835452 None:intergenic 30.0%
TCTGTTGAAAGCTCCAAATT+AGG + chr4_1:6828671-6828690 None:intergenic 35.0%
AAAGAGAAAGAGACCACATT+CGG - chr4_1:6828702-6828721 Msa0532610:three_prime_UTR 35.0%
TTCGGAAATATCGTCAAGTA+CGG - chr4_1:6828720-6828739 Msa0532610:three_prime_UTR 35.0%
! CTCTTCAATGGAGTTTTCTA+AGG - chr4_1:6828889-6828908 Msa0532610:three_prime_UTR 35.0%
CATTGAGAAGAATTTGAAGG+TGG + chr4_1:6828917-6828936 None:intergenic 35.0%
TCGACCACATTTGATGTTTA+TGG - chr4_1:6829014-6829033 Msa0532610:three_prime_UTR 35.0%
GTGGACAAAGTAACTAATCA+TGG - chr4_1:6829084-6829103 Msa0532610:CDS 35.0%
AGGCAATGAATCCTACAAAA+CGG + chr4_1:6829127-6829146 None:intergenic 35.0%
AGTTACAAAAAGCGAACAAG+AGG - chr4_1:6829210-6829229 Msa0532610:CDS 35.0%
CGAACAAGAGGATTTCTTTA+GGG - chr4_1:6829222-6829241 Msa0532610:intron 35.0%
! TTCGACAACTGAACTTGTTT+GGG + chr4_1:6829592-6829611 None:intergenic 35.0%
! TTTCGACAACTGAACTTGTT+TGG + chr4_1:6829593-6829612 None:intergenic 35.0%
TCTATCTGTTTACATTGGAG+AGG - chr4_1:6829784-6829803 Msa0532610:intron 35.0%
AGCTAGCAAAAAATTTGCAC+AGG + chr4_1:6830197-6830216 None:intergenic 35.0%
GCATAAATAGAGGCAATAAC+AGG + chr4_1:6830629-6830648 None:intergenic 35.0%
!!! CTGACAGTTTTGAGCTAAAT+CGG - chr4_1:6830648-6830667 Msa0532610:intron 35.0%
!!! TTTCCGGAAGGTTTTGTTTT+TGG - chr4_1:6830677-6830696 Msa0532610:intron 35.0%
GTACCAAAAACAAAACCTTC+CGG + chr4_1:6830683-6830702 None:intergenic 35.0%
!!! GAAGGTTTTGTTTTTGGTAC+TGG - chr4_1:6830683-6830702 Msa0532610:intron 35.0%
TACAAAACGTACCTGGTAAT+TGG + chr4_1:6830714-6830733 None:intergenic 35.0%
ACAATGTTACAAAACGTACC+TGG + chr4_1:6830721-6830740 None:intergenic 35.0%
TGTGTATGTTACTATGCATG+TGG - chr4_1:6830738-6830757 Msa0532610:intron 35.0%
TTGGCCAATCTTATAGCATT+AGG + chr4_1:6830835-6830854 None:intergenic 35.0%
AACACTTGGAATAGCAGAAA+GGG - chr4_1:6831060-6831079 Msa0532610:intron 35.0%
! AAGGGCATAAAAGAAGGATT+TGG - chr4_1:6831078-6831097 Msa0532610:intron 35.0%
CAGATGTAAGAATGATGTGT+TGG - chr4_1:6831261-6831280 Msa0532610:intron 35.0%
ATTGGAGGTTAATCTGTCAA+CGG - chr4_1:6831470-6831489 Msa0532610:CDS 35.0%
TATGTATGCATGTATGTACC+TGG + chr4_1:6831584-6831603 None:intergenic 35.0%
! CAAAAACCTAGTTAGTGGAT+AGG - chr4_1:6831656-6831675 Msa0532610:intron 35.0%
AAATCATGACCACACCTAAT+TGG - chr4_1:6831694-6831713 Msa0532610:intron 35.0%
TAATTGGTGTAACTGCATAC+AGG - chr4_1:6832261-6832280 Msa0532610:intron 35.0%
AATTGGTGTAACTGCATACA+GGG - chr4_1:6832262-6832281 Msa0532610:intron 35.0%
CATACAGATTCTCCATATCT+TGG - chr4_1:6832591-6832610 Msa0532610:intron 35.0%
CTATTACTTGGCAATATCCT+TGG + chr4_1:6832617-6832636 None:intergenic 35.0%
TATGCAGAAGGAAAACTAAG+TGG - chr4_1:6832715-6832734 Msa0532610:intron 35.0%
! ATCAATGAGCTACTTGCTAA+TGG - chr4_1:6832778-6832797 Msa0532610:intron 35.0%
CAATGAAAAAGGGTCACATA+TGG + chr4_1:6832886-6832905 None:intergenic 35.0%
!! CATATGTGACCCTTTTTCAT+TGG - chr4_1:6832884-6832903 Msa0532610:intron 35.0%
CTAGTTAGTTAGTTGGTTAG+TGG + chr4_1:6833236-6833255 None:intergenic 35.0%
!! AGATGATTTTAAGGACTTCG+TGG - chr4_1:6833432-6833451 Msa0532610:intron 35.0%
CAGGCTCAAAATGGTATAAT+AGG - chr4_1:6833610-6833629 Msa0532610:intron 35.0%
CCATCCAAACATGAAATCAA+GGG + chr4_1:6833707-6833726 None:intergenic 35.0%
ACCATCCAAACATGAAATCA+AGG + chr4_1:6833708-6833727 None:intergenic 35.0%
! GAAACGGTCAAAAAGTATAG+TGG + chr4_1:6833733-6833752 None:intergenic 35.0%
ATCCATGGTTGTTGTAGAAA+CGG + chr4_1:6833749-6833768 None:intergenic 35.0%
! GAGCAATCTAAGAGTCTTAT+TGG - chr4_1:6833899-6833918 Msa0532610:intron 35.0%
AAACCAATTCCTATACAGTC+TGG - chr4_1:6833980-6833999 Msa0532610:intron 35.0%
TTCATTAGGAGTGGTAAGAA+AGG + chr4_1:6834074-6834093 None:intergenic 35.0%
TGATGTATGCCATCTTCATT+AGG + chr4_1:6834088-6834107 None:intergenic 35.0%
TTGGCTATATGTTTGTCCAA+AGG - chr4_1:6834294-6834313 Msa0532610:intron 35.0%
TGGCTATATGTTTGTCCAAA+GGG - chr4_1:6834295-6834314 Msa0532610:intron 35.0%
TTTCCTTTGTGTACAACAGT+AGG + chr4_1:6834330-6834349 None:intergenic 35.0%
CCATTCAAAGTTGTCCAAAA+GGG + chr4_1:6834868-6834887 None:intergenic 35.0%
TCCATTCAAAGTTGTCCAAA+AGG + chr4_1:6834869-6834888 None:intergenic 35.0%
GACAACTTTGAATGGAATGA+CGG - chr4_1:6834873-6834892 Msa0532610:intron 35.0%
AGAGAAAAACGAGATACATG+GGG + chr4_1:6835241-6835260 None:intergenic 35.0%
! TGGTCTCTTTCTCTTTGAAG+GGG + chr4_1:6828698-6828717 None:intergenic 40.0%
GTGGTCTCTTTCTCTTTGAA+GGG + chr4_1:6828699-6828718 None:intergenic 40.0%
TGTGGTCTCTTTCTCTTTGA+AGG + chr4_1:6828700-6828719 None:intergenic 40.0%
CTTGACGATATTTCCGAATG+TGG + chr4_1:6828718-6828737 None:intergenic 40.0%
!!! TCATTCTTGTTTTCGGGGAA+AGG - chr4_1:6829051-6829070 Msa0532610:CDS 40.0%
! TGTTCACGATACCGTTTTGT+AGG - chr4_1:6829113-6829132 Msa0532610:CDS 40.0%
GCGAACAAGAGGATTTCTTT+AGG - chr4_1:6829221-6829240 Msa0532610:intron 40.0%
! GATTTCTTTAGGGACCGATT+TGG - chr4_1:6829232-6829251 Msa0532610:intron 40.0%
!! TGGCCTTTTTAAGAGGGTTT+TGG - chr4_1:6829313-6829332 Msa0532610:intron 40.0%
TATGAGTGAATGGCAGACAA+AGG - chr4_1:6829365-6829384 Msa0532610:CDS 40.0%
ATGAGTGAATGGCAGACAAA+GGG - chr4_1:6829366-6829385 Msa0532610:CDS 40.0%
GAGTAGCCCTTCATATACAA+GGG - chr4_1:6829475-6829494 Msa0532610:intron 40.0%
AGTAGCCCTTCATATACAAG+GGG - chr4_1:6829476-6829495 Msa0532610:intron 40.0%
! TATATTTGTTGGGGTAGCCA+AGG + chr4_1:6829505-6829524 None:intergenic 40.0%
! TCGACAACTGAACTTGTTTG+GGG + chr4_1:6829591-6829610 None:intergenic 40.0%
AAGAACTCCTCGATAGAATG+GGG + chr4_1:6830301-6830320 None:intergenic 40.0%
CAAGAACTCCTCGATAGAAT+GGG + chr4_1:6830302-6830321 None:intergenic 40.0%
AAAACGTACCTGGTAATTGG+AGG + chr4_1:6830711-6830730 None:intergenic 40.0%
! TTTGATTTCCTCGTAAGAGG+AGG - chr4_1:6831034-6831053 Msa0532610:intron 40.0%
CAACACTTGGAATAGCAGAA+AGG - chr4_1:6831059-6831078 Msa0532610:intron 40.0%
! AGCAGAAAGGGCATAAAAGA+AGG - chr4_1:6831072-6831091 Msa0532610:intron 40.0%
GTTCATTCTGCCTCTAACAA+TGG + chr4_1:6831140-6831159 None:intergenic 40.0%
!! GCATTTACTGACTCTCTCTT+TGG + chr4_1:6831168-6831187 None:intergenic 40.0%
GATATATTTGCCCATACACC+AGG - chr4_1:6831563-6831582 Msa0532610:intron 40.0%
CATGTATGTACCTGGTGTAT+GGG + chr4_1:6831576-6831595 None:intergenic 40.0%
CTAGGCAAAAACCTAGTTAG+TGG - chr4_1:6831651-6831670 Msa0532610:intron 40.0%
! CATGATTTGTAAGGCACTTG+TGG + chr4_1:6831682-6831701 None:intergenic 40.0%
! AGGTGTGGTCATGATTTGTA+AGG + chr4_1:6831691-6831710 None:intergenic 40.0%
GTTTGCATGGTGGTTTATCA+TGG - chr4_1:6831757-6831776 Msa0532610:CDS 40.0%
GTGGTTTATCATGGTTGTAG+TGG - chr4_1:6831766-6831785 Msa0532610:intron 40.0%
ATGGTTGTAGTGGTGTGATT+TGG - chr4_1:6831776-6831795 Msa0532610:intron 40.0%
! TTGTAGTGGTGTGATTTGGA+GGG - chr4_1:6831780-6831799 Msa0532610:intron 40.0%
CAATATCCTTGGCCAAGATA+TGG + chr4_1:6832606-6832625 None:intergenic 40.0%
TAGCAAGTAGCTCATTGATC+AGG + chr4_1:6832777-6832796 None:intergenic 40.0%
GTCACATATGGTATTTGACC+TGG + chr4_1:6832874-6832893 None:intergenic 40.0%
GGGAAGATCCCAATGAAAAA+GGG + chr4_1:6832896-6832915 None:intergenic 40.0%
ATACTCATCTTGTAAGGCCT+GGG + chr4_1:6832917-6832936 None:intergenic 40.0%
!! CTCTCTAAAGTGTGAGTGTA+TGG + chr4_1:6833074-6833093 None:intergenic 40.0%
! CAACTATGTTGTTGGTTGGT+TGG + chr4_1:6833274-6833293 None:intergenic 40.0%
CTTCGTGGATATATGCTTCA+AGG - chr4_1:6833447-6833466 Msa0532610:intron 40.0%
TTGGAGACAGAGTAAAGCAT+TGG - chr4_1:6833473-6833492 Msa0532610:intron 40.0%
! TGGAGACAGAGTAAAGCATT+GGG - chr4_1:6833474-6833493 Msa0532610:intron 40.0%
GAATACATCAGATTGGTACC+AGG - chr4_1:6833528-6833547 Msa0532610:intron 40.0%
ACCACATATCAGGCTCAAAA+TGG - chr4_1:6833601-6833620 Msa0532610:intron 40.0%
! ACCATTTTGAGCCTGATATG+TGG + chr4_1:6833605-6833624 None:intergenic 40.0%
GCATTGGATTAAACTCTCAC+TGG - chr4_1:6833632-6833651 Msa0532610:intron 40.0%
! TCTAATGGGTCAGTTGAGTA+TGG + chr4_1:6833664-6833683 None:intergenic 40.0%
! CGGCAGCTTTTAGATCTAAT+GGG + chr4_1:6833678-6833697 None:intergenic 40.0%
! TCGGCAGCTTTTAGATCTAA+TGG + chr4_1:6833679-6833698 None:intergenic 40.0%
CCCTTGATTTCATGTTTGGA+TGG - chr4_1:6833704-6833723 Msa0532610:intron 40.0%
ACCATGGATCACGACAAAAT+TGG - chr4_1:6833760-6833779 Msa0532610:intron 40.0%
CCATGGATCACGACAAAATT+GGG - chr4_1:6833761-6833780 Msa0532610:intron 40.0%
TTTATACAGCCGCTAACAAC+AGG - chr4_1:6833821-6833840 Msa0532610:intron 40.0%
GGATACTTTCCTGTTGTTAG+CGG + chr4_1:6833833-6833852 None:intergenic 40.0%
! AGGAATTGGTTTCGTTGCAT+TGG + chr4_1:6833972-6833991 None:intergenic 40.0%
GATCCAGACTGTATAGGAAT+TGG + chr4_1:6833986-6834005 None:intergenic 40.0%
ATTCCTATACAGTCTGGATC+AGG - chr4_1:6833986-6834005 Msa0532610:intron 40.0%
CTTACCACTCCTAATGAAGA+TGG - chr4_1:6834076-6834095 Msa0532610:intron 40.0%
TATGCCATCTTCATTAGGAG+TGG + chr4_1:6834083-6834102 None:intergenic 40.0%
GGCTATATGTTTGTCCAAAG+GGG - chr4_1:6834296-6834315 Msa0532610:intron 40.0%
ATGTTTGTCCAAAGGGGATT+CGG - chr4_1:6834302-6834321 Msa0532610:intron 40.0%
!!! TGGTTTTTTGTGTGAAGGCA+AGG - chr4_1:6834813-6834832 Msa0532610:intron 40.0%
AGGCAAGGTGTGAATGTAAA+AGG - chr4_1:6834828-6834847 Msa0532610:intron 40.0%
! ATACTTTGCATGGTCCCTTT+TGG - chr4_1:6834851-6834870 Msa0532610:intron 40.0%
! CCCTTTTGGACAACTTTGAA+TGG - chr4_1:6834865-6834884 Msa0532610:intron 40.0%
AAGAAACTTCCTAAACCACC+GGG + chr4_1:6834970-6834989 None:intergenic 40.0%
CAAGAAACTTCCTAAACCAC+CGG + chr4_1:6834971-6834990 None:intergenic 40.0%
CAAAGCTCACGCAGTATTAT+TGG + chr4_1:6835035-6835054 None:intergenic 40.0%
! GGTCTCTTTCTCTTTGAAGG+GGG + chr4_1:6828697-6828716 None:intergenic 45.0%
!! TTGTTTTCGGGGAAAGGTCA+TGG - chr4_1:6829057-6829076 Msa0532610:CDS 45.0%
CCATTCACTCATAAGAGGAG+GGG + chr4_1:6829358-6829377 None:intergenic 45.0%
GCCATTCACTCATAAGAGGA+GGG + chr4_1:6829359-6829378 None:intergenic 45.0%
TGCCATTCACTCATAAGAGG+AGG + chr4_1:6829360-6829379 None:intergenic 45.0%
GTCTGCCATTCACTCATAAG+AGG + chr4_1:6829363-6829382 None:intergenic 45.0%
GCAGACAAAGGGAGTTTCTT+GGG - chr4_1:6829377-6829396 Msa0532610:CDS 45.0%
CAGACAAAGGGAGTTTCTTG+GGG - chr4_1:6829378-6829397 Msa0532610:CDS 45.0%
AGACAAAGGGAGTTTCTTGG+GGG - chr4_1:6829379-6829398 Msa0532610:CDS 45.0%
GAAGAACATCAGGGTGAAAC+TGG + chr4_1:6829425-6829444 None:intergenic 45.0%
TCAGGGTGAGAAGAACATCA+GGG + chr4_1:6829434-6829453 None:intergenic 45.0%
TTCAGGGTGAGAAGAACATC+AGG + chr4_1:6829435-6829454 None:intergenic 45.0%
GGAGTAGCCCTTCATATACA+AGG - chr4_1:6829474-6829493 Msa0532610:intron 45.0%
GGCTACCCCTTGTATATGAA+GGG + chr4_1:6829484-6829503 None:intergenic 45.0%
AGGCTACCCCTTGTATATGA+AGG + chr4_1:6829485-6829504 None:intergenic 45.0%
TCATATACAAGGGGTAGCCT+TGG - chr4_1:6829485-6829504 Msa0532610:intron 45.0%
CCAAGAACTCCTCGATAGAA+TGG + chr4_1:6830303-6830322 None:intergenic 45.0%
CCATTCTATCGAGGAGTTCT+TGG - chr4_1:6830300-6830319 Msa0532610:intron 45.0%
TCTATCGAGGAGTTCTTGGA+TGG - chr4_1:6830304-6830323 Msa0532610:intron 45.0%
! GCTAAATCGGAGCAGTTTTC+CGG - chr4_1:6830661-6830680 Msa0532610:intron 45.0%
GTTAGAGGCAGAATGAACCA+TGG - chr4_1:6831142-6831161 Msa0532610:CDS 45.0%
!! GAAGGTGCTGTAAGTGAAGA+CGG - chr4_1:6831521-6831540 Msa0532610:intron 45.0%
GCATGTATGTACCTGGTGTA+TGG + chr4_1:6831577-6831596 None:intergenic 45.0%
TTGTGGCCTATCCACTAACT+AGG + chr4_1:6831665-6831684 None:intergenic 45.0%
CATGACCACACCTAATTGGT+AGG - chr4_1:6831698-6831717 Msa0532610:intron 45.0%
CACTACCTACCAATTAGGTG+TGG + chr4_1:6831706-6831725 None:intergenic 45.0%
CACACCTAATTGGTAGGTAG+TGG - chr4_1:6831704-6831723 Msa0532610:intron 45.0%
! ACCTAATTGGTAGGTAGTGG+TGG - chr4_1:6831707-6831726 Msa0532610:intron 45.0%
ACCACCACTACCTACCAATT+AGG + chr4_1:6831711-6831730 None:intergenic 45.0%
!! AATGGTGGTGTTGGTTTGCA+TGG - chr4_1:6831744-6831763 Msa0532610:CDS 45.0%
! GTTGTAGTGGTGTGATTTGG+AGG - chr4_1:6831779-6831798 Msa0532610:intron 45.0%
AACTCTAATGCCACTCCATG+TGG - chr4_1:6832203-6832222 Msa0532610:intron 45.0%
ACTGCATACAGGGATGGTAA+AGG - chr4_1:6832272-6832291 Msa0532610:intron 45.0%
CATACAGGGATGGTAAAGGA+TGG - chr4_1:6832276-6832295 Msa0532610:intron 45.0%
GATTCTCCATATCTTGGCCA+AGG - chr4_1:6832597-6832616 Msa0532610:intron 45.0%
GCAGAAGGAAAACTAAGTGG+CGG - chr4_1:6832718-6832737 Msa0532610:intron 45.0%
GGGGAAGATCCCAATGAAAA+AGG + chr4_1:6832897-6832916 None:intergenic 45.0%
! TTTTCATTGGGATCTTCCCC+AGG - chr4_1:6832897-6832916 Msa0532610:intron 45.0%
TACTCATCTTGTAAGGCCTG+GGG + chr4_1:6832916-6832935 None:intergenic 45.0%
CATACTCATCTTGTAAGGCC+TGG + chr4_1:6832918-6832937 None:intergenic 45.0%
CAGGCCTTACAAGATGAGTA+TGG - chr4_1:6832916-6832935 Msa0532610:intron 45.0%
GCCTTACAAGATGAGTATGG+AGG - chr4_1:6832919-6832938 Msa0532610:intron 45.0%
GCCTCCATACTCATCTTGTA+AGG + chr4_1:6832923-6832942 None:intergenic 45.0%
! AGCAAGAAGTTGGTTGTGTG+TGG + chr4_1:6833554-6833573 None:intergenic 45.0%
!! CATGAAATCAAGGGCGTCTT+CGG + chr4_1:6833698-6833717 None:intergenic 45.0%
GACGCCCTTGATTTCATGTT+TGG - chr4_1:6833700-6833719 Msa0532610:intron 45.0%
GACCGTTTCTACAACAACCA+TGG - chr4_1:6833744-6833763 Msa0532610:intron 45.0%
! CCCAATTTTGTCGTGATCCA+TGG + chr4_1:6833764-6833783 None:intergenic 45.0%
!! AGGAAAGTATCCAGCAAGCT+TGG - chr4_1:6833841-6833860 Msa0532610:intron 45.0%
ACATAAGACACCAAGCTTGC+TGG + chr4_1:6833854-6833873 None:intergenic 45.0%
! GCAGTGAACGTTGGTAAATC+TGG + chr4_1:6833878-6833897 None:intergenic 45.0%
ATGGGACATACATTGGAGCA+TGG - chr4_1:6834192-6834211 Msa0532610:intron 45.0%
TGGGACATACATTGGAGCAT+GGG - chr4_1:6834193-6834212 Msa0532610:intron 45.0%
AATATGTGCAGGCTGCAACT+TGG - chr4_1:6834275-6834294 Msa0532610:intron 45.0%
TGTTTGTCCAAAGGGGATTC+GGG - chr4_1:6834303-6834322 Msa0532610:intron 45.0%
GGACCTACTGTTGTACACAA+AGG - chr4_1:6834324-6834343 Msa0532610:intron 45.0%
TCCAACACTATCACTCGAAG+AGG - chr4_1:6834624-6834643 Msa0532610:intron 45.0%
AGCTCACGCAGTATTATTGG+TGG + chr4_1:6835032-6835051 None:intergenic 45.0%
! CGAGATACATGGGGTGATTT+TGG + chr4_1:6835232-6835251 None:intergenic 45.0%
GTGTGTTTGTCGTCTTTGTG+TGG - chr4_1:6835342-6835361 Msa0532610:CDS 45.0%
! TTGCCTTTCTTGTTTCGCTC+AGG - chr4_1:6835371-6835390 Msa0532610:CDS 45.0%
AGACCTGAGCGAAACAAGAA+AGG + chr4_1:6835377-6835396 None:intergenic 45.0%
! TTCTTGTTTCGCTCAGGTCT+TGG - chr4_1:6835377-6835396 Msa0532610:CDS 45.0%
!!! TATAATTTTTATTTAAGAAA+TGG + chr4_1:6831200-6831219 None:intergenic 5.0%
!!! AAAATTATTTGATTTTTTTA+AGG + chr4_1:6832416-6832435 None:intergenic 5.0%
! CTCTTTCTCTTTGAAGGGGG+TGG + chr4_1:6828694-6828713 None:intergenic 50.0%
TCGTCAAGTACGGTGCAATC+AGG - chr4_1:6828730-6828749 Msa0532610:three_prime_UTR 50.0%
TCACTCATAAGAGGAGGGGT+GGG + chr4_1:6829354-6829373 None:intergenic 50.0%
TTCACTCATAAGAGGAGGGG+TGG + chr4_1:6829355-6829374 None:intergenic 50.0%
CCCCTCCTCTTATGAGTGAA+TGG - chr4_1:6829355-6829374 Msa0532610:CDS 50.0%
GGCAGACAAAGGGAGTTTCT+TGG - chr4_1:6829376-6829395 Msa0532610:CDS 50.0%
TGAAACTGGACATCCCGACT+AGG + chr4_1:6829411-6829430 None:intergenic 50.0%
GGGGCGACATAATCACTTCA+GGG + chr4_1:6829451-6829470 None:intergenic 50.0%
TGGGGCGACATAATCACTTC+AGG + chr4_1:6829452-6829471 None:intergenic 50.0%
TGAAGTGATTATGTCGCCCC+AGG - chr4_1:6829451-6829470 Msa0532610:intron 50.0%
GAAGTGATTATGTCGCCCCA+GGG - chr4_1:6829452-6829471 Msa0532610:intron 50.0%
AAGTGATTATGTCGCCCCAG+GGG - chr4_1:6829453-6829472 Msa0532610:intron 50.0%
ATATGAAGGGCTACTCCCCT+GGG + chr4_1:6829471-6829490 None:intergenic 50.0%
TATATGAAGGGCTACTCCCC+TGG + chr4_1:6829472-6829491 None:intergenic 50.0%
TCGACAACCCCATTCTATCG+AGG - chr4_1:6830291-6830310 Msa0532610:intron 50.0%
! AATCGGAGCAGTTTTCCGGA+AGG - chr4_1:6830665-6830684 Msa0532610:intron 50.0%
!! TACTGGCTCCTCCAATTACC+AGG - chr4_1:6830700-6830719 Msa0532610:intron 50.0%
! GTAAGAGGAGGCACAACACT+TGG - chr4_1:6831046-6831065 Msa0532610:intron 50.0%
! ACTGACTCTCTCTTTGGCCA+TGG + chr4_1:6831162-6831181 None:intergenic 50.0%
GCTGTAAGTGAAGACGGAAG+AGG - chr4_1:6831527-6831546 Msa0532610:intron 50.0%
AGTGAAGACGGAAGAGGAGT+TGG - chr4_1:6831533-6831552 Msa0532610:intron 50.0%
!! ACGGAAGAGGAGTTGGTACA+TGG - chr4_1:6831540-6831559 Msa0532610:intron 50.0%
!! CGGAAGAGGAGTTGGTACAT+GGG - chr4_1:6831541-6831560 Msa0532610:intron 50.0%
ACACCACCATTGAACCACCT+GGG + chr4_1:6831735-6831754 None:intergenic 50.0%
AACACCACCATTGAACCACC+TGG + chr4_1:6831736-6831755 None:intergenic 50.0%
! AGGTGGTTCAATGGTGGTGT+TGG - chr4_1:6831735-6831754 Msa0532610:CDS 50.0%
ATGCCACTCCATGTGGCTAA+TGG - chr4_1:6832210-6832229 Msa0532610:intron 50.0%
GATTCCAGCCATTAGCCACA+TGG + chr4_1:6832221-6832240 None:intergenic 50.0%
GGTGTAACTGCATACAGGGA+TGG - chr4_1:6832266-6832285 Msa0532610:intron 50.0%
CAGCTGCATGAGCAAGAAGT+TGG + chr4_1:6833564-6833583 None:intergenic 50.0%
GATTGCTCTGCAGTGAACGT+TGG + chr4_1:6833887-6833906 None:intergenic 50.0%
! TGCATTGGCAGCATACATGC+TGG + chr4_1:6833957-6833976 None:intergenic 50.0%
CCTATACAGTCTGGATCAGG+CGG - chr4_1:6833989-6834008 Msa0532610:intron 50.0%
! GCCTCTTCGAGTGATAGTGT+TGG + chr4_1:6834628-6834647 None:intergenic 50.0%
! GACGGATACACTGTGCGTTT+TGG - chr4_1:6834891-6834910 Msa0532610:intron 50.0%
GGGGAAAGGTCATGGTTGTG+TGG - chr4_1:6829065-6829084 Msa0532610:CDS 55.0%
ACTCATAAGAGGAGGGGTGG+GGG + chr4_1:6829352-6829371 None:intergenic 55.0%
CACTCATAAGAGGAGGGGTG+GGG + chr4_1:6829353-6829372 None:intergenic 55.0%
ACTGGACATCCCGACTAGGT+CGG + chr4_1:6829407-6829426 None:intergenic 55.0%
TATGAAGGGCTACTCCCCTG+GGG + chr4_1:6829470-6829489 None:intergenic 55.0%
GTGTTGTGCCTCCTCTTACG+AGG + chr4_1:6831045-6831064 None:intergenic 55.0%
GTGGTTCCCAGGTGGTTCAA+TGG - chr4_1:6831726-6831745 Msa0532610:CDS 55.0%
GTTCCCAGGTGGTTCAATGG+TGG - chr4_1:6831729-6831748 Msa0532610:CDS 55.0%
!! GGTGGTGTTGGTTTGCATGG+TGG - chr4_1:6831747-6831766 Msa0532610:CDS 55.0%
! GTGTGATTTGGAGGGTCTCG+TGG - chr4_1:6831788-6831807 Msa0532610:intron 55.0%
! TGATTTGGAGGGTCTCGTGG+TGG - chr4_1:6831791-6831810 Msa0532610:intron 55.0%
! GGTCTCGTGGTGGAAACTCT+GGG - chr4_1:6831801-6831820 Msa0532610:intron 55.0%
CAGCCATTAGCCACATGGAG+TGG + chr4_1:6832216-6832235 None:intergenic 55.0%
CACTCCATGTGGCTAATGGC+TGG - chr4_1:6832214-6832233 Msa0532610:intron 55.0%
AGTGGCGGTGTAAACCAAGC+AGG - chr4_1:6832733-6832752 Msa0532610:intron 55.0%
! GAAGTTGGTTGTGTGTGGCC+TGG + chr4_1:6833549-6833568 None:intergenic 55.0%
CCGCCTGATCCAGACTGTAT+AGG + chr4_1:6833992-6834011 None:intergenic 55.0%
AGTAGGTCCCGAATCCCCTT+TGG + chr4_1:6834313-6834332 None:intergenic 55.0%
!! ATCACTCGAAGAGGCGCTCA+TGG - chr4_1:6834633-6834652 Msa0532610:intron 55.0%
! GGTAGGTAGTGGTGGTTCCC+AGG - chr4_1:6831715-6831734 Msa0532610:intron 60.0%
! AGGTAGTGGTGGTTCCCAGG+TGG - chr4_1:6831718-6831737 Msa0532610:intron 60.0%
! GGGTCTCGTGGTGGAAACTC+TGG - chr4_1:6831800-6831819 Msa0532610:intron 60.0%
GACACCCTAAGCTCTCTGCC+CGG - chr4_1:6834949-6834968 Msa0532610:intron 60.0%
ACCACCGGGCAGAGAGCTTA+GGG + chr4_1:6834956-6834975 None:intergenic 60.0%
AACCACCGGGCAGAGAGCTT+AGG + chr4_1:6834957-6834976 None:intergenic 60.0%
AGCTCTCTGCCCGGTGGTTT+AGG - chr4_1:6834958-6834977 Msa0532610:intron 60.0%
CATAAGAGGAGGGGTGGGGG+TGG + chr4_1:6829349-6829368 None:intergenic 65.0%
!! CTTGGGGGTGCCGACCTAGT+CGG - chr4_1:6829394-6829413 Msa0532610:CDS 65.0%
!! TTGGGGGTGCCGACCTAGTC+GGG - chr4_1:6829395-6829414 Msa0532610:CDS 65.0%
! TCTGGATCAGGCGGCGCTGA+CGG - chr4_1:6833998-6834017 Msa0532610:intron 65.0%
ACCCTAAGCTCTCTGCCCGG+TGG - chr4_1:6834952-6834971 Msa0532610:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 6828584 6835480 6828584 ID=Msa0532610;Name=Msa0532610
chr4_1 mRNA 6828584 6835480 6828584 ID=Msa0532610-mRNA-1;Parent=Msa0532610;Name=Msa0532610-mRNA-1;_AED=0.15;_eAED=0.15;_QI=81|0.84|0.92|0.92|1|1|14|467|530
chr4_1 exon 6828584 6829234 6828584 ID=Msa0532610-mRNA-1:exon:2426;Parent=Msa0532610-mRNA-1
chr4_1 exon 6829351 6829459 6829351 ID=Msa0532610-mRNA-1:exon:2425;Parent=Msa0532610-mRNA-1
chr4_1 exon 6829679 6829778 6829679 ID=Msa0532610-mRNA-1:exon:2424;Parent=Msa0532610-mRNA-1
chr4_1 exon 6829850 6829884 6829850 ID=Msa0532610-mRNA-1:exon:2423;Parent=Msa0532610-mRNA-1
chr4_1 exon 6830003 6830244 6830003 ID=Msa0532610-mRNA-1:exon:2422;Parent=Msa0532610-mRNA-1
chr4_1 exon 6830339 6830632 6830339 ID=Msa0532610-mRNA-1:exon:2421;Parent=Msa0532610-mRNA-1
chr4_1 exon 6831102 6831189 6831102 ID=Msa0532610-mRNA-1:exon:2420;Parent=Msa0532610-mRNA-1
chr4_1 exon 6831265 6831342 6831265 ID=Msa0532610-mRNA-1:exon:2419;Parent=Msa0532610-mRNA-1
chr4_1 exon 6831435 6831510 6831435 ID=Msa0532610-mRNA-1:exon:2418;Parent=Msa0532610-mRNA-1
chr4_1 exon 6831723 6831781 6831723 ID=Msa0532610-mRNA-1:exon:2417;Parent=Msa0532610-mRNA-1
chr4_1 exon 6832480 6832546 6832480 ID=Msa0532610-mRNA-1:exon:2416;Parent=Msa0532610-mRNA-1
chr4_1 exon 6833343 6833446 6833343 ID=Msa0532610-mRNA-1:exon:2415;Parent=Msa0532610-mRNA-1
chr4_1 exon 6834522 6834591 6834522 ID=Msa0532610-mRNA-1:exon:2414;Parent=Msa0532610-mRNA-1
chr4_1 exon 6835313 6835480 6835313 ID=Msa0532610-mRNA-1:exon:2413;Parent=Msa0532610-mRNA-1
chr4_1 five_prime_UTR 6835400 6835480 6835400 ID=Msa0532610-mRNA-1:five_prime_utr;Parent=Msa0532610-mRNA-1
chr4_1 CDS 6835313 6835399 6835313 ID=Msa0532610-mRNA-1:cds;Parent=Msa0532610-mRNA-1
chr4_1 CDS 6834522 6834591 6834522 ID=Msa0532610-mRNA-1:cds;Parent=Msa0532610-mRNA-1
chr4_1 CDS 6833343 6833446 6833343 ID=Msa0532610-mRNA-1:cds;Parent=Msa0532610-mRNA-1
chr4_1 CDS 6832480 6832546 6832480 ID=Msa0532610-mRNA-1:cds;Parent=Msa0532610-mRNA-1
chr4_1 CDS 6831723 6831781 6831723 ID=Msa0532610-mRNA-1:cds;Parent=Msa0532610-mRNA-1
chr4_1 CDS 6831435 6831510 6831435 ID=Msa0532610-mRNA-1:cds;Parent=Msa0532610-mRNA-1
chr4_1 CDS 6831265 6831342 6831265 ID=Msa0532610-mRNA-1:cds;Parent=Msa0532610-mRNA-1
chr4_1 CDS 6831102 6831189 6831102 ID=Msa0532610-mRNA-1:cds;Parent=Msa0532610-mRNA-1
chr4_1 CDS 6830339 6830632 6830339 ID=Msa0532610-mRNA-1:cds;Parent=Msa0532610-mRNA-1
chr4_1 CDS 6830003 6830244 6830003 ID=Msa0532610-mRNA-1:cds;Parent=Msa0532610-mRNA-1
chr4_1 CDS 6829850 6829884 6829850 ID=Msa0532610-mRNA-1:cds;Parent=Msa0532610-mRNA-1
chr4_1 CDS 6829679 6829778 6829679 ID=Msa0532610-mRNA-1:cds;Parent=Msa0532610-mRNA-1
chr4_1 CDS 6829351 6829459 6829351 ID=Msa0532610-mRNA-1:cds;Parent=Msa0532610-mRNA-1
chr4_1 CDS 6829051 6829234 6829051 ID=Msa0532610-mRNA-1:cds;Parent=Msa0532610-mRNA-1
chr4_1 three_prime_UTR 6828584 6829050 6828584 ID=Msa0532610-mRNA-1:three_prime_utr;Parent=Msa0532610-mRNA-1
Gene Sequence

>Msa0532610

ATGCCTAATTTGGAGCTTTCAACAGACCACCCCCTTCAAAGAGAAAGAGACCACATTCGGAAATATCGTCAAGTACGGTGCAATCAGGGGAGTAGCCCTTCATATACAAGGGGTAGCCTTGGCTACCCCAACAAATATATTAGTTTTGAATTAGTTGGGGCGGAACCTGTTATTGCCTCTATTTATGCTGACAGTTTTGAGCTAAATCGGAGCAGTTTTCCGGAAGGTTTTGTTTTTGGTACTGGCTCCTCCAATTACCAGTATGAAGGTGCTGTAAGTGAAGACGGAAGAGGAGTTGGTACATGGGATATATTTGCCCATACACCAGGGATGGTAAAGGATGGAAAGAATGCAGATGTAGCTATTGATCACTATCATCGTTATAAGGAAGATGTTCAAATCATGAAGAATATGAATACAGATGCATACAGATTCTCCATATCTTGGCCAAGGATATTGCCAAAAGGAAAACTAAGTGGCGGTGTAAACCAAGCAGGAATCATATTTTACAACAACCTGATCAATGAGCTACTTGCTAATGGTCAAATACCATATGTGACCCTTTTTCATTGGGATCTTCCCCAGGCCTTACAAGATGAGTATGGAGGCTTTGTCAGCACGAATATTTTAGATGATTTTAAGGACTTCGTGGATATATGCTTCAAGGAATTTGGAGACAGAGTAAAGCATTGGGTTACTTTTAATGAGCCATTCTCTTACACTTTGAATACATCAGATTGGTACCAGGCCACACACAACCAACTTCTTGCTCATGCAGCTGTTTTCGAATTGTATAAAACCACATATCAGGCTCAAAATGGTATAATAGGCATTGGATTAAACTCTCACTGGTTTAAACCATACTCAACTGACCCATTAGATCTAAAAGCTGCCGAAGACGCCCTTGATTTCATGTTTGGATGGTTTATACAGCCGCTAACAACAGGAAAGTATCCAGCAAGCTTGGTGTCTTATGTGCCAGATTTACCAACGTTCACTGCAGAGCAATCTAAGAGTCTTATTGGGTCATATGATTTTATTGGAATCAATTACTACACCAGCATGTATGCTGCCAATGCAACGAAACCAATTCCTATACAGTCTGGATCAGGCGGCGCTGACGGTGTCAATAGTGTTTTCAATACTGTTAATGTGACTTTAACAGATAAGAATAAAGATGGGACATACATTGGAGCATGGGCTGCAACTTGGCTATATGTTTGTCCAAAGGGGATTCGGGACCTACTGTTGTACACAAAGGAAAAGTATAACAATCCTACGATTATCATAACAGAAAATGGTATGAATGAAGTCAATGATCCAACACTATCACTCGAAGAGGCGCTCATGGATACTAACAGAATTGATTACTTTTATCGTCATCTATATTATCTTTTATCTGCAATGAGGCAAGGTGTGAATGTAAAAGGATACTTTGCATGGTCCCTTTTGGACAACTTTGAATGGAATGACGGATACACTGTGCGTTTTGGAATTAACTTTGTTGATTATGACAATGATCTTAGAAGACACCCTAAGCTCTCTGCCCGGTGGTTTAGGAAGTTTCTTGAACATAATAGAATTATTGGTTGA
Protein sequence

>Msa0532610

MPNLELSTDHPLQRERDHIRKYRQVRCNQGSSPSYTRGSLGYPNKYISFELVGAEPVIASIYADSFELNRSSFPEGFVFGTGSSNYQYEGAVSEDGRGVGTWDIFAHTPGMVKDGKNADVAIDHYHRYKEDVQIMKNMNTDAYRFSISWPRILPKGKLSGGVNQAGIIFYNNLINELLANGQIPYVTLFHWDLPQALQDEYGGFVSTNILDDFKDFVDICFKEFGDRVKHWVTFNEPFSYTLNTSDWYQATHNQLLAHAAVFELYKTTYQAQNGIIGIGLNSHWFKPYSTDPLDLKAAEDALDFMFGWFIQPLTTGKYPASLVSYVPDLPTFTAEQSKSLIGSYDFIGINYYTSMYAANATKPIPIQSGSGGADGVNSVFNTVNVTLTDKNKDGTYIGAWAATWLYVCPKGIRDLLLYTKEKYNNPTIIITENGMNEVNDPTLSLEEALMDTNRIDYFYRHLYYLLSAMRQGVNVKGYFAWSLLDNFEWNDGYTVRFGINFVDYDNDLRRHPKLSARWFRKFLEHNRIIG*