AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0668210


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0668210 MtrunA17_Chr4g0007031 99.095 221 2 0 1 221 1 221 1.29e-160 442
Msa0668210 MtrunA17_Chr5g0419971 99.095 221 2 0 1 221 1 221 1.29e-160 442
Msa0668210 MtrunA17_Chr5g0419981 99.095 221 2 0 1 221 1 221 1.29e-160 442
Msa0668210 MtrunA17_Chr4g0007051 98.643 221 3 0 1 221 1 221 4.31e-160 441
Msa0668210 MtrunA17_Chr2g0285871 96.833 221 7 0 1 221 1 221 2.85e-158 436
Msa0668210 MtrunA17_Chr4g0007041 96.833 221 7 0 1 221 1 221 1.51e-157 434
Msa0668210 MtrunA17_Chr1g0189841 80.180 222 43 1 1 221 1 222 3.81e-129 363
Msa0668210 MtrunA17_Chr6g0449771 77.523 218 47 2 4 221 5 220 1.31e-117 333
Msa0668210 MtrunA17_Chr6g0449751 77.027 222 48 3 1 221 1 220 1.92e-117 333
Msa0668210 MtrunA17_Chr6g0449731 77.419 217 47 2 4 220 5 219 6.00e-117 332
Msa0668210 MtrunA17_Chr6g0449761 75.115 217 53 1 1 217 1 216 7.63e-115 328
Msa0668210 MtrunA17_Chr6g0449781 63.470 219 77 3 3 221 4 219 7.78e-90 263
Msa0668210 MtrunA17_Chr6g0449791 61.058 208 81 0 1 208 1 208 9.19e-88 258
Msa0668210 MtrunA17_Chr1g0156131 58.986 217 78 3 1 215 1 208 2.54e-81 241
Msa0668210 MtrunA17_Chr2g0292831 60.500 200 69 4 19 215 19 211 2.06e-78 234
Msa0668210 MtrunA17_Chr2g0292901 59.701 201 70 5 19 215 19 212 1.67e-73 221
Msa0668210 MtrunA17_Chr2g0292861 64.162 173 56 4 47 215 7 177 1.24e-71 216
Msa0668210 MtrunA17_Chr2g0292841 63.584 173 57 4 47 215 7 177 9.97e-70 211
Msa0668210 MtrunA17_Chr1g0193671 46.479 213 107 3 5 215 6 213 2.38e-61 191
Msa0668210 MtrunA17_Chr1g0193421 46.500 200 100 3 18 215 20 214 2.00e-54 173
Msa0668210 MtrunA17_Chr7g0271211 47.208 197 97 3 21 215 19 210 2.21e-52 168
Msa0668210 MtrunA17_Chr5g0414971 45.960 198 99 4 21 215 26 218 4.30e-50 162
Msa0668210 MtrunA17_Chr2g0292911 65.833 120 36 3 47 163 7 124 1.83e-47 153
Msa0668210 MtrunA17_Chr1g0210761 41.827 208 89 7 19 215 20 206 2.74e-44 147
Msa0668210 MtrunA17_Chr2g0300561 43.721 215 107 6 1 213 1 203 4.71e-43 144
Msa0668210 MtrunA17_Chr1g0178711 37.104 221 127 5 2 215 5 220 1.98e-42 143
Msa0668210 MtrunA17_Chr2g0300581 38.967 213 113 5 4 214 7 204 3.21e-39 134
Msa0668210 MtrunA17_Chr2g0300591 39.151 212 112 5 4 213 7 203 3.50e-39 134
Msa0668210 MtrunA17_Chr8g0335851 38.532 218 118 5 4 219 11 214 1.31e-36 127
Msa0668210 MtrunA17_Chr8g0343911 37.963 216 117 6 1 214 2 202 6.04e-35 123
Msa0668210 MtrunA17_Chr8g0344021 39.086 197 100 5 1 190 1 184 1.60e-34 122
Msa0668210 MtrunA17_Chr8g0343934 40.331 181 95 5 1 179 1 170 6.43e-34 120
Msa0668210 MtrunA17_Chr3g0084531 40.201 199 105 6 1 197 1 187 1.39e-33 119
Msa0668210 MtrunA17_Chr2g0297231 37.441 211 116 6 1 206 1 200 7.96e-32 115
Msa0668210 MtrunA17_Chr2g0297241 37.441 211 116 6 1 206 1 200 9.06e-32 115
Msa0668210 MtrunA17_Chr2g0313961 36.967 211 117 6 1 206 1 200 4.60e-31 113
Msa0668210 MtrunA17_Chr8g0343954 35.023 217 126 6 1 215 1 204 9.62e-31 112
Msa0668210 MtrunA17_Chr8g0344051 40.782 179 94 4 1 176 1 170 3.43e-30 111
Msa0668210 MtrunA17_Chr8g0343961 34.562 217 127 6 1 215 1 204 3.62e-30 110
Msa0668210 MtrunA17_Chr3g0130241 38.418 177 103 3 5 179 72 244 1.28e-29 111
Msa0668210 MtrunA17_Chr2g0301611 37.989 179 98 5 1 177 1 168 1.81e-29 109
Msa0668210 MtrunA17_Chr3g0084521 37.811 201 106 7 1 197 1 186 3.35e-29 108
Msa0668210 MtrunA17_Chr3g0084511 37.811 201 106 7 1 197 1 186 3.57e-29 108
Msa0668210 MtrunA17_Chr2g0321601 34.101 217 117 7 2 214 7 201 1.64e-28 106
Msa0668210 MtrunA17_Chr2g0302171 36.493 211 118 6 1 206 1 200 1.91e-28 106
Msa0668210 MtrunA17_Chr5g0411961 35.238 210 122 5 1 206 1 200 1.09e-27 104
Msa0668210 MtrunA17_Chr2g0302541 36.493 211 118 6 1 206 1 200 1.52e-27 104
Msa0668210 MtrunA17_Chr4g0026191 34.101 217 116 7 3 214 9 203 1.56e-27 103
Msa0668210 MtrunA17_Chr4g0026201 36.000 200 102 6 20 214 25 203 1.87e-27 103
Msa0668210 MtrunA17_Chr2g0321581 41.985 131 70 3 85 214 77 202 2.12e-27 103
Msa0668210 MtrunA17_Chr2g0321591 41.221 131 71 3 85 214 77 202 5.28e-27 102
Msa0668210 MtrunA17_Chr8g0344031 35.023 217 128 6 1 215 1 206 6.07e-27 102
Msa0668210 MtrunA17_Chr8g0343921 33.971 209 127 6 7 213 1 200 4.76e-26 100
Msa0668210 MtrunA17_Chr8g0344041 34.500 200 118 5 13 206 12 204 9.59e-26 99.8
Msa0668210 MtrunA17_Chr7g0217811 37.097 186 105 5 26 206 22 200 9.97e-25 96.7
Msa0668210 MtrunA17_Chr4g0003361 36.782 174 102 4 43 215 34 200 1.17e-24 96.7
Msa0668210 MtrunA17_Chr4g0012651 37.097 186 105 5 26 206 22 200 2.58e-24 95.9
Msa0668210 MtrunA17_Chr3g0115141 35.484 186 104 6 27 206 26 201 2.09e-23 93.6
Msa0668210 MtrunA17_Chr2g0286171 33.796 216 125 8 3 215 7 207 3.25e-23 92.8
Msa0668210 MtrunA17_Chr2g0292881 65.517 58 19 1 93 150 1 57 4.11e-20 80.5
Msa0668210 MtrunA17_Chr3g0084551 34.146 205 113 9 1 202 1 186 9.33e-20 84.3
Msa0668210 MtrunA17_Chr3g0084501 38.393 112 60 4 1 110 1 105 3.39e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0668210 AT3G05950.1 64.444 225 72 4 4 221 5 228 6.74e-95 277
Msa0668210 AT5G39110.1 64.455 211 73 1 7 215 9 219 3.83e-93 272
Msa0668210 AT5G39150.1 63.303 218 77 2 1 215 1 218 4.23e-93 272
Msa0668210 AT5G39180.1 63.303 218 77 2 1 215 1 218 1.06e-92 271
Msa0668210 AT5G39120.1 64.455 211 72 2 7 215 9 218 1.18e-92 271
Msa0668210 AT5G39160.1 63.927 219 74 3 1 215 1 218 3.05e-91 267
Msa0668210 AT5G39190.1 63.927 219 74 3 1 215 1 218 4.47e-91 267
Msa0668210 AT5G39130.1 64.593 209 71 2 9 215 11 218 1.32e-90 266
Msa0668210 AT4G14630.1 61.644 219 80 2 1 215 3 221 8.41e-89 261
Msa0668210 AT5G39160.3 61.644 219 75 3 1 215 1 214 1.54e-86 255
Msa0668210 AT3G04200.1 60.000 215 83 3 1 213 6 219 2.59e-83 247
Msa0668210 AT5G38910.1 60.455 220 80 4 1 215 1 218 5.12e-80 239
Msa0668210 AT5G39190.2 58.065 217 68 2 1 215 1 196 6.22e-79 235
Msa0668210 AT5G38960.1 60.891 202 75 3 17 215 21 221 1.19e-78 235
Msa0668210 AT5G39160.2 57.604 217 69 2 1 215 1 196 1.47e-78 234
Msa0668210 AT5G38930.1 62.121 198 72 2 20 215 24 220 4.17e-78 234
Msa0668210 AT5G38940.1 60.914 197 74 2 21 215 25 220 4.41e-78 234
Msa0668210 AT5G38940.2 60.914 197 74 2 21 215 49 244 6.00e-78 234
Msa0668210 AT3G04170.1 55.502 209 87 3 8 214 12 216 7.77e-74 223
Msa0668210 AT3G04190.1 55.721 201 86 2 15 213 19 218 5.49e-73 221
Msa0668210 AT3G04150.1 53.456 217 95 3 3 214 4 219 6.87e-72 218
Msa0668210 AT3G04180.1 54.229 201 89 2 15 213 19 218 5.01e-70 213
Msa0668210 AT3G04150.2 50.655 229 96 3 3 214 4 232 6.25e-70 214
Msa0668210 AT5G38910.2 49.545 220 67 4 1 215 1 181 1.96e-56 177
Msa0668210 AT1G02335.1 43.925 214 111 4 4 215 8 214 2.00e-54 174
Msa0668210 AT3G62020.1 45.540 213 107 5 6 215 8 214 2.32e-53 171
Msa0668210 AT1G09560.1 45.274 201 103 3 17 215 19 214 2.43e-53 171
Msa0668210 AT3G05930.1 47.291 203 98 4 3 202 5 201 5.53e-53 170
Msa0668210 AT1G18970.1 46.500 200 98 4 18 215 25 217 7.22e-52 167
Msa0668210 AT5G26700.1 46.875 192 88 5 26 213 25 206 1.38e-50 164
Msa0668210 AT1G18980.1 46.000 200 99 4 18 215 25 217 1.51e-49 161
Msa0668210 AT3G62020.2 46.667 180 90 3 39 215 9 185 2.01e-47 155
Msa0668210 AT3G10080.1 40.394 203 112 5 17 215 21 218 4.03e-45 150
Msa0668210 AT1G10460.1 41.709 199 108 5 21 214 18 213 8.94e-45 149
Msa0668210 AT3G10080.2 40.394 203 112 5 17 215 92 289 2.14e-44 150
Msa0668210 AT5G20630.1 42.857 210 108 6 1 208 1 200 5.50e-43 144
Msa0668210 AT5G61750.1 41.622 185 103 2 4 186 1 182 8.84e-41 138
Msa0668210 AT1G72610.1 41.053 190 103 6 26 213 19 201 4.59e-34 121
Msa0668210 AT1G74820.1 38.660 194 110 4 24 215 38 224 4.24e-33 119
Msa0668210 AT5G38950.1 54.167 72 33 0 145 216 2 73 1.43e-18 78.2

Find 60 sgRNAs with CRISPR-Local

Find 144 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATATACATACCACCATCTT+TGG 0.255130 4_4:+9079030 None:intergenic
TTTCAACTGAATGTGGGATA+TGG 0.310660 4_4:-9078453 Msa0668210:CDS
CCTTGTTAGCATCTTGGCTT+TGG 0.311083 4_4:-9079119 Msa0668210:CDS
TTGAGATCCTAGTGCATTAG+AGG 0.333822 4_4:+9078722 None:intergenic
CTTATCCACTTGAAAAGCTT+TGG 0.335788 4_4:+9078326 None:intergenic
TAACACGCTTGGTATATCTT+TGG 0.340502 4_4:-9078664 Msa0668210:CDS
TGAAAATGAATAAGACCAAT+TGG 0.356438 4_4:+9078471 None:intergenic
GGCAACGCCGTTGCTATTGC+TGG 0.394673 4_4:-9078432 Msa0668210:CDS
GAGTGCCTTCGAGTACTATA+AGG 0.397511 4_4:+9078577 None:intergenic
ATACTTCCTTGTTAGCATCT+TGG 0.401215 4_4:-9079125 Msa0668210:CDS
TTCTTCAAACATGTTGAAGC+TGG 0.402098 4_4:-9078750 Msa0668210:CDS
ATATACATACCACCATCTTT+GGG 0.405165 4_4:+9079031 None:intergenic
CTCTAGGGTGGATGTGAGGT+GGG 0.411548 4_4:+9078610 None:intergenic
GATGTGTTTGTGTTCCCAAT+TGG 0.424230 4_4:-9078486 Msa0668210:CDS
TAAAGAGCCGGTTGTTGTCT+TGG 0.425026 4_4:+9078529 None:intergenic
TAATTTGCAGTATTTGTCAA+TGG 0.428669 4_4:-9078813 Msa0668210:intron
CAAAAGTCTTGGAGAGGGCT+GGG 0.429933 4_4:+9079070 None:intergenic
ATTATCTTCAAAAGCAGTCT+TGG 0.442184 4_4:-9078293 Msa0668210:CDS
CTCGAAGGCACTCTTTATGT+TGG 0.443268 4_4:-9078567 Msa0668210:CDS
TCTTCAGCTTTAACAAGTGC+GGG 0.444792 4_4:+9078774 None:intergenic
GTCACTGTAGACCAACTATT+CGG 0.446134 4_4:-9078690 Msa0668210:CDS
CATCAAACCAAGACAACAAC+CGG 0.452231 4_4:-9078536 Msa0668210:CDS
AATTTGCAGTATTTGTCAAT+GGG 0.453375 4_4:-9078812 Msa0668210:intron
TTTGCAACTGTGATAACTCC+TGG 0.466515 4_4:+9078393 None:intergenic
ATAAGGATCTCTGTTCCTCT+AGG 0.468428 4_4:+9078594 None:intergenic
ACAAAAGTCTTGGAGAGGGC+TGG 0.468953 4_4:+9079069 None:intergenic
TGATTGCAACACAAAAGTCT+TGG 0.490396 4_4:+9079059 None:intergenic
CCTCTAGGGTGGATGTGAGG+TGG 0.496940 4_4:+9078609 None:intergenic
TCTTCAAACATGTTGAAGCT+GGG 0.501315 4_4:-9078749 Msa0668210:CDS
CTATTCGGACTTAACACGCT+TGG 0.510323 4_4:-9078675 Msa0668210:CDS
GAAAATGAATAAGACCAATT+GGG 0.510497 4_4:+9078472 None:intergenic
AGAACTTCGTCGGAAATAAG+AGG 0.511108 4_4:+9078351 None:intergenic
AATAGTTGGTCTACAGTGAC+TGG 0.527501 4_4:+9078693 None:intergenic
AGGGCTGGGGTCAGAAGCAA+AGG 0.530574 4_4:+9079084 None:intergenic
GCGTGTTAAGTCCGAATAGT+TGG 0.534502 4_4:+9078679 None:intergenic
TGAGGTGGGTTTAAACCCTT+AGG 0.537084 4_4:+9078624 None:intergenic
ATCTTCAGCTTTAACAAGTG+CGG 0.543612 4_4:+9078773 None:intergenic
CTTTACCAAGGTGCTCAACA+AGG 0.544491 4_4:-9078511 Msa0668210:CDS
GTCAGAAGCAAAGGCAAGAG+AGG 0.546110 4_4:+9079093 None:intergenic
GCAATCAAAGACCCCAAAGA+TGG 0.554146 4_4:-9079043 Msa0668210:CDS
AGCTTTGGTAAGAACTTCGT+CGG 0.555884 4_4:+9078341 None:intergenic
CCAAAGCCAAGATGCTAACA+AGG 0.556137 4_4:+9079119 None:intergenic
AAAAGTCTTGGAGAGGGCTG+GGG 0.564168 4_4:+9079071 None:intergenic
ATCACCCTTGTTGAGCACCT+TGG 0.567836 4_4:+9078506 None:intergenic
TAAGGATCTCTGTTCCTCTA+GGG 0.571738 4_4:+9078595 None:intergenic
GGACTTAGCAGTCAAAATCC+AGG 0.578792 4_4:-9078411 Msa0668210:CDS
TGAGCACCTTGGTAAAGAGC+CGG 0.579420 4_4:+9078517 None:intergenic
GGGAATGCCTCTAATGCACT+AGG 0.589101 4_4:-9078729 Msa0668210:CDS
GGATCTCTGTTCCTCTAGGG+TGG 0.590427 4_4:+9078598 None:intergenic
ATCAAAGACCCCAAAGATGG+TGG 0.628410 4_4:-9079040 Msa0668210:intron
CAACACAAAAGTCTTGGAGA+GGG 0.634245 4_4:+9079065 None:intergenic
TATACATACCACCATCTTTG+GGG 0.639620 4_4:+9079032 None:intergenic
GTTCCTCTAGGGTGGATGTG+AGG 0.650118 4_4:+9078606 None:intergenic
GCAACACAAAAGTCTTGGAG+AGG 0.651085 4_4:+9079064 None:intergenic
CCACCTCACATCCACCCTAG+AGG 0.660499 4_4:-9078609 Msa0668210:CDS
CTTCAGCTTTAACAAGTGCG+GGG 0.662073 4_4:+9078775 None:intergenic
GAGATCCTTATAGTACTCGA+AGG 0.666965 4_4:-9078582 Msa0668210:CDS
TTTACCAAGGTGCTCAACAA+GGG 0.669433 4_4:-9078510 Msa0668210:CDS
CAACAACCGGCTCTTTACCA+AGG 0.674974 4_4:-9078523 Msa0668210:CDS
GCTAAGTCCAGCAATAGCAA+CGG 0.679928 4_4:+9078425 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAATTACAACTAAATTTTT+AGG - chr4_4:9078450-9078469 Msa0668210:CDS 10.0%
!!! TTAATTACAACTAAATTTTT+AGG - chr4_4:9078450-9078469 Msa0668210:CDS 10.0%
!! TTTAAATATGCAAATATTAG+AGG - chr4_4:9078473-9078492 Msa0668210:CDS 15.0%
!! TTTAAATATGCAAATATTAG+AGG - chr4_4:9078473-9078492 Msa0668210:CDS 15.0%
!! GTAATTAACACTTAAAGTTA+AGG + chr4_4:9078438-9078457 None:intergenic 20.0%
!!! CAATATAGAATCTTTTGTTT+TGG - chr4_4:9078515-9078534 Msa0668210:CDS 20.0%
!! GTAATTAACACTTAAAGTTA+AGG + chr4_4:9078438-9078457 None:intergenic 20.0%
!!! CAATATAGAATCTTTTGTTT+TGG - chr4_4:9078515-9078534 Msa0668210:CDS 20.0%
!! TATGCAAATATTAGAGGTTT+TGG - chr4_4:9078479-9078498 Msa0668210:CDS 25.0%
! CAAAAGATTCTATATTGACA+AGG + chr4_4:9078512-9078531 None:intergenic 25.0%
!! TAATTTGCAGTATTTGTCAA+TGG - chr4_4:9078627-9078646 Msa0668210:CDS 25.0%
! AATTTGCAGTATTTGTCAAT+GGG - chr4_4:9078628-9078647 Msa0668210:CDS 25.0%
! GAAAATGAATAAGACCAATT+GGG + chr4_4:9078971-9078990 None:intergenic 25.0%
! TGAAAATGAATAAGACCAAT+TGG + chr4_4:9078972-9078991 None:intergenic 25.0%
!! TATTCATTTTCAACTGAATG+TGG - chr4_4:9078980-9078999 Msa0668210:intron 25.0%
!! ATTCATTTTCAACTGAATGT+GGG - chr4_4:9078981-9079000 Msa0668210:intron 25.0%
!! TATGCAAATATTAGAGGTTT+TGG - chr4_4:9078479-9078498 Msa0668210:CDS 25.0%
! CAAAAGATTCTATATTGACA+AGG + chr4_4:9078512-9078531 None:intergenic 25.0%
!! TAATTTGCAGTATTTGTCAA+TGG - chr4_4:9078627-9078646 Msa0668210:CDS 25.0%
! AATTTGCAGTATTTGTCAAT+GGG - chr4_4:9078628-9078647 Msa0668210:CDS 25.0%
! GAAAATGAATAAGACCAATT+GGG + chr4_4:9078971-9078990 None:intergenic 25.0%
! TGAAAATGAATAAGACCAAT+TGG + chr4_4:9078972-9078991 None:intergenic 25.0%
!! TATTCATTTTCAACTGAATG+TGG - chr4_4:9078980-9078999 Msa0668210:intron 25.0%
!! ATTCATTTTCAACTGAATGT+GGG - chr4_4:9078981-9079000 Msa0668210:intron 25.0%
ATATACATACCACCATCTTT+GGG + chr4_4:9078412-9078431 None:intergenic 30.0%
TATATACATACCACCATCTT+TGG + chr4_4:9078413-9078432 None:intergenic 30.0%
!!! GTTTTTTTGTTTAGCTAGCT+AGG - chr4_4:9078546-9078565 Msa0668210:CDS 30.0%
ATTATCTTCAAAAGCAGTCT+TGG - chr4_4:9079147-9079166 Msa0668210:exon 30.0%
ATATACATACCACCATCTTT+GGG + chr4_4:9078412-9078431 None:intergenic 30.0%
TATATACATACCACCATCTT+TGG + chr4_4:9078413-9078432 None:intergenic 30.0%
!!! GTTTTTTTGTTTAGCTAGCT+AGG - chr4_4:9078546-9078565 Msa0668210:CDS 30.0%
ATTATCTTCAAAAGCAGTCT+TGG - chr4_4:9079147-9079166 Msa0668210:exon 30.0%
ATACTTCCTTGTTAGCATCT+TGG - chr4_4:9078315-9078334 Msa0668210:CDS 35.0%
TGATTGCAACACAAAAGTCT+TGG + chr4_4:9078384-9078403 None:intergenic 35.0%
TATACATACCACCATCTTTG+GGG + chr4_4:9078411-9078430 None:intergenic 35.0%
! ATCTTCAGCTTTAACAAGTG+CGG + chr4_4:9078670-9078689 None:intergenic 35.0%
TTCTTCAAACATGTTGAAGC+TGG - chr4_4:9078690-9078709 Msa0668210:CDS 35.0%
TCTTCAAACATGTTGAAGCT+GGG - chr4_4:9078691-9078710 Msa0668210:CDS 35.0%
TAACACGCTTGGTATATCTT+TGG - chr4_4:9078776-9078795 Msa0668210:CDS 35.0%
TTTCAACTGAATGTGGGATA+TGG - chr4_4:9078987-9079006 Msa0668210:intron 35.0%
!! TCTTACCAAAGCTTTTCAAG+TGG - chr4_4:9079109-9079128 Msa0668210:CDS 35.0%
CTTATCCACTTGAAAAGCTT+TGG + chr4_4:9079117-9079136 None:intergenic 35.0%
ATACTTCCTTGTTAGCATCT+TGG - chr4_4:9078315-9078334 Msa0668210:CDS 35.0%
TGATTGCAACACAAAAGTCT+TGG + chr4_4:9078384-9078403 None:intergenic 35.0%
TATACATACCACCATCTTTG+GGG + chr4_4:9078411-9078430 None:intergenic 35.0%
! ATCTTCAGCTTTAACAAGTG+CGG + chr4_4:9078670-9078689 None:intergenic 35.0%
TTCTTCAAACATGTTGAAGC+TGG - chr4_4:9078690-9078709 Msa0668210:CDS 35.0%
TCTTCAAACATGTTGAAGCT+GGG - chr4_4:9078691-9078710 Msa0668210:CDS 35.0%
TAACACGCTTGGTATATCTT+TGG - chr4_4:9078776-9078795 Msa0668210:CDS 35.0%
TTTCAACTGAATGTGGGATA+TGG - chr4_4:9078987-9079006 Msa0668210:intron 35.0%
!! TCTTACCAAAGCTTTTCAAG+TGG - chr4_4:9079109-9079128 Msa0668210:CDS 35.0%
CTTATCCACTTGAAAAGCTT+TGG + chr4_4:9079117-9079136 None:intergenic 35.0%
CAACACAAAAGTCTTGGAGA+GGG + chr4_4:9078378-9078397 None:intergenic 40.0%
! TCTTCAGCTTTAACAAGTGC+GGG + chr4_4:9078669-9078688 None:intergenic 40.0%
TTGAGATCCTAGTGCATTAG+AGG + chr4_4:9078721-9078740 None:intergenic 40.0%
! AATAGTTGGTCTACAGTGAC+TGG + chr4_4:9078750-9078769 None:intergenic 40.0%
GTCACTGTAGACCAACTATT+CGG - chr4_4:9078750-9078769 Msa0668210:CDS 40.0%
TAAGGATCTCTGTTCCTCTA+GGG + chr4_4:9078848-9078867 None:intergenic 40.0%
ATAAGGATCTCTGTTCCTCT+AGG + chr4_4:9078849-9078868 None:intergenic 40.0%
GAGATCCTTATAGTACTCGA+AGG - chr4_4:9078858-9078877 Msa0668210:intron 40.0%
CATCAAACCAAGACAACAAC+CGG - chr4_4:9078904-9078923 Msa0668210:intron 40.0%
! TTTACCAAGGTGCTCAACAA+GGG - chr4_4:9078930-9078949 Msa0668210:intron 40.0%
GATGTGTTTGTGTTCCCAAT+TGG - chr4_4:9078954-9078973 Msa0668210:intron 40.0%
TTTGCAACTGTGATAACTCC+TGG + chr4_4:9079050-9079069 None:intergenic 40.0%
AGAACTTCGTCGGAAATAAG+AGG + chr4_4:9079092-9079111 None:intergenic 40.0%
! AGCTTTGGTAAGAACTTCGT+CGG + chr4_4:9079102-9079121 None:intergenic 40.0%
CAACACAAAAGTCTTGGAGA+GGG + chr4_4:9078378-9078397 None:intergenic 40.0%
! TCTTCAGCTTTAACAAGTGC+GGG + chr4_4:9078669-9078688 None:intergenic 40.0%
TTGAGATCCTAGTGCATTAG+AGG + chr4_4:9078721-9078740 None:intergenic 40.0%
! AATAGTTGGTCTACAGTGAC+TGG + chr4_4:9078750-9078769 None:intergenic 40.0%
GTCACTGTAGACCAACTATT+CGG - chr4_4:9078750-9078769 Msa0668210:CDS 40.0%
TAAGGATCTCTGTTCCTCTA+GGG + chr4_4:9078848-9078867 None:intergenic 40.0%
ATAAGGATCTCTGTTCCTCT+AGG + chr4_4:9078849-9078868 None:intergenic 40.0%
GAGATCCTTATAGTACTCGA+AGG - chr4_4:9078858-9078877 Msa0668210:intron 40.0%
CATCAAACCAAGACAACAAC+CGG - chr4_4:9078904-9078923 Msa0668210:intron 40.0%
! TTTACCAAGGTGCTCAACAA+GGG - chr4_4:9078930-9078949 Msa0668210:intron 40.0%
GATGTGTTTGTGTTCCCAAT+TGG - chr4_4:9078954-9078973 Msa0668210:intron 40.0%
TTTGCAACTGTGATAACTCC+TGG + chr4_4:9079050-9079069 None:intergenic 40.0%
AGAACTTCGTCGGAAATAAG+AGG + chr4_4:9079092-9079111 None:intergenic 40.0%
! AGCTTTGGTAAGAACTTCGT+CGG + chr4_4:9079102-9079121 None:intergenic 40.0%
CCAAAGCCAAGATGCTAACA+AGG + chr4_4:9078324-9078343 None:intergenic 45.0%
CCTTGTTAGCATCTTGGCTT+TGG - chr4_4:9078321-9078340 Msa0668210:CDS 45.0%
GCAACACAAAAGTCTTGGAG+AGG + chr4_4:9078379-9078398 None:intergenic 45.0%
GCAATCAAAGACCCCAAAGA+TGG - chr4_4:9078397-9078416 Msa0668210:CDS 45.0%
ATCAAAGACCCCAAAGATGG+TGG - chr4_4:9078400-9078419 Msa0668210:CDS 45.0%
! CTTCAGCTTTAACAAGTGCG+GGG + chr4_4:9078668-9078687 None:intergenic 45.0%
GCGTGTTAAGTCCGAATAGT+TGG + chr4_4:9078764-9078783 None:intergenic 45.0%
CTATTCGGACTTAACACGCT+TGG - chr4_4:9078765-9078784 Msa0668210:CDS 45.0%
! TGAGGTGGGTTTAAACCCTT+AGG + chr4_4:9078819-9078838 None:intergenic 45.0%
GAGTGCCTTCGAGTACTATA+AGG + chr4_4:9078866-9078885 None:intergenic 45.0%
!! CTCGAAGGCACTCTTTATGT+TGG - chr4_4:9078873-9078892 Msa0668210:intron 45.0%
TAAAGAGCCGGTTGTTGTCT+TGG + chr4_4:9078914-9078933 None:intergenic 45.0%
! CTTTACCAAGGTGCTCAACA+AGG - chr4_4:9078929-9078948 Msa0668210:intron 45.0%
GCTAAGTCCAGCAATAGCAA+CGG + chr4_4:9079018-9079037 None:intergenic 45.0%
GGACTTAGCAGTCAAAATCC+AGG - chr4_4:9079029-9079048 Msa0668210:intron 45.0%
CCAAAGCCAAGATGCTAACA+AGG + chr4_4:9078324-9078343 None:intergenic 45.0%
CCTTGTTAGCATCTTGGCTT+TGG - chr4_4:9078321-9078340 Msa0668210:CDS 45.0%
GCAACACAAAAGTCTTGGAG+AGG + chr4_4:9078379-9078398 None:intergenic 45.0%
GCAATCAAAGACCCCAAAGA+TGG - chr4_4:9078397-9078416 Msa0668210:CDS 45.0%
ATCAAAGACCCCAAAGATGG+TGG - chr4_4:9078400-9078419 Msa0668210:CDS 45.0%
! CTTCAGCTTTAACAAGTGCG+GGG + chr4_4:9078668-9078687 None:intergenic 45.0%
GCGTGTTAAGTCCGAATAGT+TGG + chr4_4:9078764-9078783 None:intergenic 45.0%
CTATTCGGACTTAACACGCT+TGG - chr4_4:9078765-9078784 Msa0668210:CDS 45.0%
! TGAGGTGGGTTTAAACCCTT+AGG + chr4_4:9078819-9078838 None:intergenic 45.0%
GAGTGCCTTCGAGTACTATA+AGG + chr4_4:9078866-9078885 None:intergenic 45.0%
!! CTCGAAGGCACTCTTTATGT+TGG - chr4_4:9078873-9078892 Msa0668210:intron 45.0%
TAAAGAGCCGGTTGTTGTCT+TGG + chr4_4:9078914-9078933 None:intergenic 45.0%
! CTTTACCAAGGTGCTCAACA+AGG - chr4_4:9078929-9078948 Msa0668210:intron 45.0%
GCTAAGTCCAGCAATAGCAA+CGG + chr4_4:9079018-9079037 None:intergenic 45.0%
GGACTTAGCAGTCAAAATCC+AGG - chr4_4:9079029-9079048 Msa0668210:intron 45.0%
GTCAGAAGCAAAGGCAAGAG+AGG + chr4_4:9078350-9078369 None:intergenic 50.0%
AAAAGTCTTGGAGAGGGCTG+GGG + chr4_4:9078372-9078391 None:intergenic 50.0%
CAAAAGTCTTGGAGAGGGCT+GGG + chr4_4:9078373-9078392 None:intergenic 50.0%
ACAAAAGTCTTGGAGAGGGC+TGG + chr4_4:9078374-9078393 None:intergenic 50.0%
GGGAATGCCTCTAATGCACT+AGG - chr4_4:9078711-9078730 Msa0668210:CDS 50.0%
!!! TCGCGTTGATTTTGCGCCTA+AGG - chr4_4:9078800-9078819 Msa0668210:CDS 50.0%
!!! CGCGTTGATTTTGCGCCTAA+GGG - chr4_4:9078801-9078820 Msa0668210:CDS 50.0%
! CAACAACCGGCTCTTTACCA+AGG - chr4_4:9078917-9078936 Msa0668210:intron 50.0%
TGAGCACCTTGGTAAAGAGC+CGG + chr4_4:9078926-9078945 None:intergenic 50.0%
ATCACCCTTGTTGAGCACCT+TGG + chr4_4:9078937-9078956 None:intergenic 50.0%
GTCAGAAGCAAAGGCAAGAG+AGG + chr4_4:9078350-9078369 None:intergenic 50.0%
AAAAGTCTTGGAGAGGGCTG+GGG + chr4_4:9078372-9078391 None:intergenic 50.0%
CAAAAGTCTTGGAGAGGGCT+GGG + chr4_4:9078373-9078392 None:intergenic 50.0%
ACAAAAGTCTTGGAGAGGGC+TGG + chr4_4:9078374-9078393 None:intergenic 50.0%
GGGAATGCCTCTAATGCACT+AGG - chr4_4:9078711-9078730 Msa0668210:CDS 50.0%
!!! TCGCGTTGATTTTGCGCCTA+AGG - chr4_4:9078800-9078819 Msa0668210:CDS 50.0%
!!! CGCGTTGATTTTGCGCCTAA+GGG - chr4_4:9078801-9078820 Msa0668210:CDS 50.0%
! CAACAACCGGCTCTTTACCA+AGG - chr4_4:9078917-9078936 Msa0668210:intron 50.0%
TGAGCACCTTGGTAAAGAGC+CGG + chr4_4:9078926-9078945 None:intergenic 50.0%
ATCACCCTTGTTGAGCACCT+TGG + chr4_4:9078937-9078956 None:intergenic 50.0%
!! CTCTAGGGTGGATGTGAGGT+GGG + chr4_4:9078833-9078852 None:intergenic 55.0%
!! GTTCCTCTAGGGTGGATGTG+AGG + chr4_4:9078837-9078856 None:intergenic 55.0%
! GGATCTCTGTTCCTCTAGGG+TGG + chr4_4:9078845-9078864 None:intergenic 55.0%
!! CTCTAGGGTGGATGTGAGGT+GGG + chr4_4:9078833-9078852 None:intergenic 55.0%
!! GTTCCTCTAGGGTGGATGTG+AGG + chr4_4:9078837-9078856 None:intergenic 55.0%
! GGATCTCTGTTCCTCTAGGG+TGG + chr4_4:9078845-9078864 None:intergenic 55.0%
AGGGCTGGGGTCAGAAGCAA+AGG + chr4_4:9078359-9078378 None:intergenic 60.0%
!! CCTCTAGGGTGGATGTGAGG+TGG + chr4_4:9078834-9078853 None:intergenic 60.0%
CCACCTCACATCCACCCTAG+AGG - chr4_4:9078831-9078850 Msa0668210:intron 60.0%
! GGCAACGCCGTTGCTATTGC+TGG - chr4_4:9079008-9079027 Msa0668210:intron 60.0%
AGGGCTGGGGTCAGAAGCAA+AGG + chr4_4:9078359-9078378 None:intergenic 60.0%
!! CCTCTAGGGTGGATGTGAGG+TGG + chr4_4:9078834-9078853 None:intergenic 60.0%
CCACCTCACATCCACCCTAG+AGG - chr4_4:9078831-9078850 Msa0668210:intron 60.0%
! GGCAACGCCGTTGCTATTGC+TGG - chr4_4:9079008-9079027 Msa0668210:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 9078278 9079184 9078278 ID=Msa0668210;Name=Msa0668210
chr4_4 mRNA 9078278 9079184 9078278 ID=Msa0668210-mRNA-1;Parent=Msa0668210;Name=Msa0668210-mRNA-1;_AED=0.01;_eAED=0.01;_QI=26|1|0.5|1|1|1|2|0|221
chr4_4 exon 9078278 9078825 9078278 ID=Msa0668210-mRNA-1:exon:2870;Parent=Msa0668210-mRNA-1
chr4_4 exon 9079041 9079184 9079041 ID=Msa0668210-mRNA-1:exon:2869;Parent=Msa0668210-mRNA-1
chr4_4 five_prime_UTR 9079159 9079184 9079159 ID=Msa0668210-mRNA-1:five_prime_utr;Parent=Msa0668210-mRNA-1
chr4_4 CDS 9079041 9079158 9079041 ID=Msa0668210-mRNA-1:cds;Parent=Msa0668210-mRNA-1
chr4_4 CDS 9078278 9078825 9078278 ID=Msa0668210-mRNA-1:cds;Parent=Msa0668210-mRNA-1
Gene Sequence

>Msa0668210

ATGAAGATTATATACTTCCTTGTTAGCATCTTGGCTTTGGCATCCTCTCTTGCCTTTGCTTCTGACCCCAGCCCTCTCCAAGACTTTTGTGTTGCAATCAAAGACCCCAAAGATGGTGTATTTGTCAATGGGAAATTCTGTAAAGACCCCGCACTTGTTAAAGCTGAAGATTTCTTCAAACATGTTGAAGCTGGGAATGCCTCTAATGCACTAGGATCTCAAGTGACTCCAGTCACTGTAGACCAACTATTCGGACTTAACACGCTTGGTATATCTTTGGCTCGCGTTGATTTTGCGCCTAAGGGTTTAAACCCACCTCACATCCACCCTAGAGGAACAGAGATCCTTATAGTACTCGAAGGCACTCTTTATGTTGGATTTGTCTCATCAAACCAAGACAACAACCGGCTCTTTACCAAGGTGCTCAACAAGGGTGATGTGTTTGTGTTCCCAATTGGTCTTATTCATTTTCAACTGAATGTGGGATATGGCAACGCCGTTGCTATTGCTGGACTTAGCAGTCAAAATCCAGGAGTTATCACAGTTGCAAATGCTTTGTTTAAATCTGATCCTCTTATTTCCGACGAAGTTCTTACCAAAGCTTTTCAAGTGGATAAGAGCATAATTGATTATCTTCAAAAGCAGTCTTGGTATGACAACAACTAG

Protein sequence

>Msa0668210

MKIIYFLVSILALASSLAFASDPSPLQDFCVAIKDPKDGVFVNGKFCKDPALVKAEDFFKHVEAGNASNALGSQVTPVTVDQLFGLNTLGISLARVDFAPKGLNPPHIHPRGTEILIVLEGTLYVGFVSSNQDNNRLFTKVLNKGDVFVFPIGLIHFQLNVGYGNAVAIAGLSSQNPGVITVANALFKSDPLISDEVLTKAFQVDKSIIDYLQKQSWYDNN*