AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0547560

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0547560 MtrunA17_Chr4g0017401 100.000 259 0 0 1 259 1 259 0.0 516
Msa0547560 MtrunA17_Chr3g0144311 52.489 221 84 5 6 222 19 222 2.74e-59 190
Msa0547560 MtrunA17_Chr8g0346011 47.104 259 102 10 5 258 26 254 4.83e-59 189
Msa0547560 MtrunA17_Chr5g0426311 76.471 85 20 0 9 93 9 93 2.29e-44 151
Msa0547560 MtrunA17_Chr3g0127751 47.727 176 66 5 11 182 21 174 4.20e-42 144
Msa0547560 MtrunA17_Chr7g0276531 68.539 89 28 0 9 97 11 99 5.06e-41 142
Msa0547560 MtrunA17_Chr3g0101061 44.444 81 44 1 4 84 28 107 1.70e-20 90.9
Msa0547560 MtrunA17_Chr4g0045921 50.602 83 41 0 12 94 72 154 1.21e-18 84.3
Msa0547560 MtrunA17_Chr8g0360551 46.988 83 44 0 12 94 69 151 1.70e-18 84.7
Msa0547560 MtrunA17_Chr2g0290191 42.647 68 38 1 17 84 5 71 5.12e-18 83.2
Msa0547560 MtrunA17_Chr7g0255011 41.667 84 49 0 11 94 122 205 3.70e-16 77.8
Msa0547560 MtrunA17_Chr4g0035051 43.902 82 42 3 12 91 5 84 1.11e-15 71.6
Msa0547560 MtrunA17_Chr5g0447761 41.333 75 43 1 17 91 7 80 1.34e-15 76.3
Msa0547560 MtrunA17_Chr4g0035001 43.902 82 42 3 12 91 3 82 3.87e-15 71.2
Msa0547560 MtrunA17_Chr1g0186351 36.250 80 50 1 12 91 2 80 3.94e-15 74.7
Msa0547560 MtrunA17_Chr4g0035031 45.122 82 41 3 12 91 5 84 4.45e-15 71.6
Msa0547560 MtrunA17_Chr5g0440831 39.759 83 50 0 12 94 161 243 5.20e-15 74.7
Msa0547560 MtrunA17_Chr4g0050781 46.479 71 37 1 12 82 3 72 6.23e-15 72.0
Msa0547560 MtrunA17_Chr2g0278661 45.070 71 38 1 12 82 3 72 6.74e-15 72.4
Msa0547560 MtrunA17_Chr3g0086861 37.647 85 50 2 10 92 38 121 4.87e-14 71.6
Msa0547560 MtrunA17_Chr4g0031091 45.070 71 38 1 16 85 33 103 1.96e-13 65.5
Msa0547560 MtrunA17_Chr7g0266751 39.759 83 49 1 17 98 33 115 2.45e-13 65.9
Msa0547560 MtrunA17_Chr4g0061451 37.975 79 46 2 16 92 42 119 5.23e-13 67.4
Msa0547560 MtrunA17_Chr7g0219021 34.483 87 49 3 17 100 41 122 9.24e-13 66.6
Msa0547560 MtrunA17_Chr3g0119311 38.462 78 45 2 16 91 36 112 1.37e-12 63.5
Msa0547560 MtrunA17_Chr3g0121631 37.681 69 43 0 16 84 36 104 2.10e-12 63.5
Msa0547560 MtrunA17_Chr1g0210241 31.522 92 54 2 16 107 7 89 1.37e-11 63.5
Msa0547560 MtrunA17_Chr3g0135111 37.333 75 47 0 17 91 118 192 1.83e-11 63.5
Msa0547560 MtrunA17_Chr3g0120721 35.616 73 46 1 17 89 19 90 7.14e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0547560 AT1G33470.2 58.527 258 89 8 12 267 3 244 7.25e-94 277
Msa0547560 AT1G33470.1 58.301 259 89 9 12 267 3 245 5.90e-92 272
Msa0547560 AT1G33470.3 59.363 251 83 9 12 259 3 237 7.73e-92 271
Msa0547560 AT1G22910.2 68.362 177 44 5 10 180 7 177 1.09e-73 226
Msa0547560 AT1G22910.1 68.362 177 44 5 10 180 7 177 3.04e-73 224
Msa0547560 AT1G22910.3 68.362 177 44 5 10 180 7 177 4.95e-73 227
Msa0547560 AT1G20880.2 52.655 226 78 11 6 220 14 221 2.70e-53 174
Msa0547560 AT1G20880.3 52.655 226 78 11 6 220 14 221 2.70e-53 174
Msa0547560 AT1G20880.1 52.655 226 78 11 6 220 14 221 2.70e-53 174
Msa0547560 AT1G76460.1 49.115 226 90 8 6 222 14 223 3.10e-52 172
Msa0547560 AT2G46780.1 50.254 197 58 6 12 185 18 197 4.86e-52 173
Msa0547560 AT2G46780.2 50.254 197 58 6 12 185 18 197 4.86e-52 173
Msa0547560 AT1G22330.1 63.248 117 40 2 10 125 11 125 8.00e-46 155
Msa0547560 AT1G78260.1 76.190 84 20 0 10 93 11 94 9.58e-43 147
Msa0547560 AT1G78260.2 76.190 84 20 0 10 93 11 94 2.04e-42 146
Msa0547560 AT3G54770.3 64.356 101 36 0 2 102 3 103 9.12e-40 139
Msa0547560 AT3G54770.1 64.356 101 36 0 2 102 3 103 1.05e-39 139
Msa0547560 AT1G22910.4 58.400 125 40 5 62 180 8 126 1.41e-34 124
Msa0547560 AT5G11412.1 55.682 88 39 0 7 94 43 130 1.53e-31 115
Msa0547560 AT5G53680.1 49.474 95 44 1 12 102 9 103 9.43e-28 105
Msa0547560 AT3G06970.1 50.575 87 43 0 12 98 8 94 9.97e-26 103
Msa0547560 AT3G54770.2 59.756 82 27 2 32 108 1 81 1.12e-24 98.6
Msa0547560 AT5G53720.1 55.556 81 36 0 16 96 9 89 1.13e-24 95.1
Msa0547560 AT5G55550.5 37.037 108 58 3 17 115 7 113 4.03e-19 87.0
Msa0547560 AT5G55550.5 31.707 123 74 1 17 139 111 223 2.58e-11 63.9
Msa0547560 AT5G55550.4 37.037 108 58 3 17 115 7 113 4.03e-19 87.0
Msa0547560 AT5G55550.4 31.707 123 74 1 17 139 111 223 2.58e-11 63.9
Msa0547560 AT5G55550.9 37.037 108 58 3 17 115 7 113 4.03e-19 87.0
Msa0547560 AT5G55550.9 31.707 123 74 1 17 139 111 223 2.58e-11 63.9
Msa0547560 AT5G55550.7 37.037 108 58 3 17 115 7 113 4.03e-19 87.0
Msa0547560 AT5G55550.7 31.707 123 74 1 17 139 111 223 2.58e-11 63.9
Msa0547560 AT5G55550.1 37.037 108 58 3 17 115 7 113 4.03e-19 87.0
Msa0547560 AT5G55550.1 31.707 123 74 1 17 139 111 223 2.58e-11 63.9
Msa0547560 AT5G55550.2 37.037 108 58 3 17 115 7 113 5.01e-19 86.7
Msa0547560 AT5G55550.2 31.707 123 74 1 17 139 111 223 2.65e-11 63.9
Msa0547560 AT5G55550.3 37.037 108 58 3 17 115 7 113 5.01e-19 86.7
Msa0547560 AT5G55550.3 31.707 123 74 1 17 139 111 223 2.65e-11 63.9
Msa0547560 AT5G55550.6 37.037 108 58 3 17 115 7 113 5.01e-19 86.7
Msa0547560 AT5G55550.6 31.707 123 74 1 17 139 111 223 2.65e-11 63.9
Msa0547560 AT5G55550.11 37.037 108 58 3 17 115 7 113 5.01e-19 86.7
Msa0547560 AT5G55550.11 31.707 123 74 1 17 139 111 223 2.65e-11 63.9
Msa0547560 AT2G22090.1 48.193 83 43 0 12 94 100 182 1.09e-18 84.7
Msa0547560 AT2G22090.2 48.193 83 43 0 12 94 100 182 1.13e-18 84.7
Msa0547560 AT5G47620.1 48.529 68 34 1 17 84 7 73 1.32e-18 85.1
Msa0547560 AT5G47620.2 48.529 68 34 1 17 84 7 73 1.32e-18 85.1
Msa0547560 AT5G47620.5 48.529 68 34 1 17 84 7 73 1.32e-18 85.1
Msa0547560 AT5G47620.4 47.826 69 35 1 16 84 6 73 1.55e-18 85.1
Msa0547560 AT4G26650.1 34.752 141 78 5 17 148 16 151 2.33e-18 84.7
Msa0547560 AT4G26650.2 34.752 141 78 5 17 148 13 148 2.47e-18 84.7
Msa0547560 AT5G55550.8 39.080 87 50 3 17 102 7 91 3.86e-18 84.3
Msa0547560 AT5G55550.8 31.707 123 74 1 17 139 158 270 2.62e-11 63.9
Msa0547560 AT5G55550.10 39.080 87 50 3 17 102 7 91 4.34e-18 84.0
Msa0547560 AT5G55550.10 31.707 123 74 1 17 139 158 270 3.01e-11 63.9
Msa0547560 AT3G07810.1 36.111 108 57 3 17 115 7 111 7.06e-17 80.5
Msa0547560 AT3G07810.2 36.111 108 57 3 17 115 7 111 7.28e-17 80.5
Msa0547560 AT3G23830.2 44.872 78 42 1 16 92 35 112 1.58e-16 74.7
Msa0547560 AT3G23830.1 44.872 78 42 1 16 92 35 112 1.58e-16 74.7
Msa0547560 AT3G15010.1 44.706 85 47 0 12 96 71 155 2.06e-16 79.0
Msa0547560 AT3G15010.1 28.125 96 69 0 9 104 160 255 2.50e-11 63.9
Msa0547560 AT3G15010.2 44.706 85 47 0 12 96 71 155 2.06e-16 79.0
Msa0547560 AT3G15010.2 28.125 96 69 0 9 104 160 255 2.50e-11 63.9
Msa0547560 AT4G39260.3 38.710 93 49 3 17 109 7 91 2.56e-16 72.8
Msa0547560 AT4G39260.2 41.558 77 42 2 17 91 7 82 1.85e-15 71.6
Msa0547560 AT4G13850.3 37.079 89 52 1 16 104 35 119 2.90e-15 71.6
Msa0547560 AT4G13850.2 37.079 89 52 1 16 104 35 119 3.55e-15 71.6
Msa0547560 AT4G13850.1 37.079 89 52 1 16 104 35 119 3.96e-15 71.6
Msa0547560 AT4G39260.1 41.558 77 42 2 17 91 7 82 4.91e-15 71.6
Msa0547560 AT4G39260.4 45.000 60 32 1 17 76 7 65 7.71e-15 69.3
Msa0547560 AT2G33410.1 40.000 75 44 1 17 91 7 80 1.09e-14 73.9
Msa0547560 AT4G14300.1 37.500 80 49 1 12 91 2 80 1.60e-14 73.2
Msa0547560 AT4G14300.2 37.500 80 49 1 12 91 2 80 1.60e-14 73.2
Msa0547560 AT2G41060.1 38.554 83 51 0 12 94 124 206 1.88e-14 73.2
Msa0547560 AT2G41060.3 38.554 83 51 0 12 94 124 206 1.88e-14 73.2
Msa0547560 AT2G41060.2 38.554 83 51 0 12 94 124 206 1.88e-14 73.2
Msa0547560 AT1G17640.2 41.667 72 41 1 17 88 67 137 2.57e-14 72.4
Msa0547560 AT1G17640.1 41.667 72 41 1 17 88 67 137 2.57e-14 72.4
Msa0547560 AT1G17640.3 41.667 72 41 1 17 88 67 137 2.57e-14 72.4
Msa0547560 AT3G56860.9 39.759 83 50 0 12 94 136 218 2.78e-14 72.8
Msa0547560 AT3G56860.11 39.759 83 50 0 12 94 136 218 2.78e-14 72.8
Msa0547560 AT3G56860.8 39.759 83 50 0 12 94 136 218 2.78e-14 72.8
Msa0547560 AT3G56860.5 39.759 83 50 0 12 94 136 218 2.78e-14 72.8
Msa0547560 AT3G56860.7 39.759 83 50 0 12 94 136 218 2.78e-14 72.8
Msa0547560 AT3G56860.2 39.759 83 50 0 12 94 136 218 2.78e-14 72.8
Msa0547560 AT3G56860.6 39.759 83 50 0 12 94 136 218 2.78e-14 72.8
Msa0547560 AT3G56860.10 39.759 83 50 0 12 94 136 218 2.78e-14 72.8
Msa0547560 AT3G56860.3 39.759 83 50 0 12 94 136 218 2.78e-14 72.8
Msa0547560 AT3G56860.1 39.759 83 50 0 12 94 136 218 2.78e-14 72.8
Msa0547560 AT3G56860.4 39.759 83 50 0 12 94 136 218 2.78e-14 72.8
Msa0547560 AT4G13850.4 41.667 72 38 1 16 87 35 102 4.11e-14 68.2
Msa0547560 AT2G21660.2 39.759 83 46 3 11 91 4 84 9.51e-14 67.8
Msa0547560 AT2G21660.1 39.759 83 46 3 11 91 4 84 1.34e-13 67.8
Msa0547560 AT2G19380.1 43.210 81 46 0 12 92 404 484 6.40e-13 68.9
Msa0547560 AT2G22100.1 40.260 77 46 0 12 88 159 235 1.57e-12 67.4
Msa0547560 AT2G27330.1 30.275 109 71 2 2 109 11 115 3.22e-12 62.4
Msa0547560 AT5G59865.1 53.061 49 23 0 16 64 26 74 3.29e-12 62.4
Msa0547560 AT3G26420.1 37.113 97 48 3 17 111 8 93 3.78e-12 65.1
Msa0547560 AT5G61030.2 39.130 69 38 1 16 84 40 104 4.93e-12 65.5
Msa0547560 AT5G61030.1 39.130 69 38 1 16 84 40 104 4.93e-12 65.5
Msa0547560 AT1G58470.2 43.243 74 38 1 17 86 7 80 5.30e-12 65.5
Msa0547560 AT1G58470.1 43.243 74 38 1 17 86 7 80 5.30e-12 65.5
Msa0547560 AT1G74230.1 36.364 77 49 0 16 92 34 110 1.13e-11 64.3
Msa0547560 AT5G06210.1 37.705 61 38 0 16 76 34 94 6.85e-11 59.7
Msa0547560 AT3G08000.1 43.860 57 32 0 17 73 42 98 6.98e-11 59.7

Find 203 sgRNAs with CRISPR-Local

Find 490 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTAAGTCTATGTATTATT+TGG 0.139727 4_1:+40869851 Msa0547560:three_prime_UTR
AATTGTCCTGCCAAATTAAT+TGG 0.140954 4_1:-40862071 None:intergenic
GGGATACCTTATAATGTTTA+TGG 0.144330 4_1:+40864225 Msa0547560:CDS
CAACTGCAACCTTGCTTCTT+TGG 0.147666 4_1:+40862729 Msa0547560:CDS
AAAAGCCCATCATTGGAATT+TGG 0.148260 4_1:+40868823 Msa0547560:three_prime_UTR
CCTCCTAAAAGTAACTAAAT+TGG 0.168879 4_1:-40869501 None:intergenic
CTTAGTCTTTAGTGTTAATT+AGG 0.175440 4_1:+40869327 Msa0547560:three_prime_UTR
GGTTTCCTCTCTATGTAATT+TGG 0.176107 4_1:+40868891 Msa0547560:three_prime_UTR
GTATTATTTGGATTGTAATT+AGG 0.201906 4_1:+40869863 Msa0547560:three_prime_UTR
CAACATGACTCCAATTAATT+TGG 0.208507 4_1:+40862061 Msa0547560:exon
CGTAAACCTAGGGAGATATT+TGG 0.220771 4_1:+40869633 Msa0547560:three_prime_UTR
AACTGCAACCTTGCTTCTTT+GGG 0.227071 4_1:+40862730 Msa0547560:CDS
ATTAATTTGGCAGGACAATT+TGG 0.230601 4_1:+40862074 Msa0547560:CDS
CCTTCGCCATATTGAAGATA+TGG 0.241363 4_1:-40868021 None:intergenic
AAGATGACTAATTGGTTTAT+TGG 0.242291 4_1:-40869394 None:intergenic
CATGTACTACATATGCTAAT+TGG 0.250198 4_1:-40869545 None:intergenic
TACTTTCACTTTACCCTTCA+TGG 0.257875 4_1:-40869116 None:intergenic
ACAGCACAGTATCCTGTTTA+TGG 0.260295 4_1:+40867943 Msa0547560:CDS
GAGGAGGAGGGAGGAACATT+AGG 0.264611 4_1:+40864115 Msa0547560:CDS
CCAAAGGGAAGATGACTAAT+TGG 0.268401 4_1:-40869402 None:intergenic
GGTTCTTTCCAGACAGGATT+TGG 0.274909 4_1:+40864144 Msa0547560:CDS
GTGTTGAAGGCTTAGATCTT+TGG 0.295951 4_1:-40862756 None:intergenic
GCTCTTCTACCATCAATTAT+AGG 0.296553 4_1:-40862706 None:intergenic
AAAGCCCATCATTGGAATTT+GGG 0.301422 4_1:+40868824 Msa0547560:three_prime_UTR
ACTACCGGCGGCTACACTTC+TGG 0.318698 4_1:+40868057 Msa0547560:CDS
TCATACCCATAAACATTATA+AGG 0.319240 4_1:-40864231 None:intergenic
TACCGTAGGGTAACTGTAAT+CGG 0.319248 4_1:-40865369 None:intergenic
AACATAATACAAGAAATTAA+AGG 0.330102 4_1:-40869954 None:intergenic
TACATAAGTGTTACATAATA+AGG 0.332687 4_1:-40861703 None:intergenic
CCAATTAGTCATCTTCCCTT+TGG 0.337520 4_1:+40869402 Msa0547560:three_prime_UTR
TTTCCACTCATCATTATCAT+AGG 0.338195 4_1:+40868849 Msa0547560:three_prime_UTR
GTATTAATATTACCATGTTT+TGG 0.340726 4_1:-40862778 None:intergenic
GCTATAGGAAATAGCTAAGT+TGG 0.346018 4_1:+40869023 Msa0547560:three_prime_UTR
CTCCTAAAAGTAACTAAATT+GGG 0.349620 4_1:-40869500 None:intergenic
TCTCCTGCTGCCTTGCCATC+AGG 0.355688 4_1:+40868186 Msa0547560:CDS
CATTATAAGGTATCCCTTGC+TGG 0.367371 4_1:-40864218 None:intergenic
CAATTAGTCATCTTCCCTTT+GGG 0.369822 4_1:+40869403 Msa0547560:three_prime_UTR
AATTGAAGAATCTCACAAAT+AGG 0.371283 4_1:+40869166 Msa0547560:three_prime_UTR
CAGTATCCTGTTTATGGAAA+TGG 0.374418 4_1:+40867949 Msa0547560:CDS
GGATACCTTATAATGTTTAT+GGG 0.377409 4_1:+40864226 Msa0547560:CDS
AGAGAGAGAGATTAAATAAA+GGG 0.378697 4_1:-40869778 None:intergenic
TACACTTCTGGCCAAGGTTA+TGG 0.379037 4_1:+40868069 Msa0547560:CDS
TGGAAAATGCAGAGCTACTA+TGG 0.382407 4_1:+40867904 Msa0547560:intron
AGGAGGAGGGAGGAACATTA+GGG 0.383370 4_1:+40864116 Msa0547560:CDS
AGGAGAAGGTGCAAGAGAAA+TGG 0.383934 4_1:-40868169 None:intergenic
TACTACCCATATCTTCAATA+TGG 0.386372 4_1:+40868015 Msa0547560:CDS
TGAATAGAAGAGAGACAATT+AGG 0.389785 4_1:-40861819 None:intergenic
TGAAAATTTGTAGGAGGAGG+AGG 0.391447 4_1:+40864102 Msa0547560:intron
AGTCTCTAACGATGAGGAAT+TGG 0.395605 4_1:-40868650 None:intergenic
CTTCAATATGGCGAAGGAAC+CGG 0.396046 4_1:+40868027 Msa0547560:CDS
AAACCTTTGGGCCCCTATGG+GGG 0.402979 4_1:-40868873 None:intergenic
TGAGCAATTTGGTGAGATCT+TGG 0.406717 4_1:+40862172 Msa0547560:CDS
AGGAAACCTTTGGGCCCCTA+TGG 0.407169 4_1:-40868876 None:intergenic
TATTCTCCAATTGCTTCAAC+TGG 0.407811 4_1:+40868120 Msa0547560:CDS
CTTCTTCTCAAGGTTGTGGT+TGG 0.411332 4_1:-40861868 None:intergenic
GCTGGTCCATTTCCATAAAC+AGG 0.416170 4_1:-40867955 None:intergenic
ATGTACTACATATGCTAATT+GGG 0.421438 4_1:-40869544 None:intergenic
ATTGCAAAATATTATCCTCT+AGG 0.431422 4_1:-40862011 None:intergenic
GCATACAAATCCATAGCCTT+TGG 0.432237 4_1:-40862231 None:intergenic
TTACATAGAGAGGAAACCTT+TGG 0.432272 4_1:-40868886 None:intergenic
CATTCTCTGCTGGATGAGAA+TGG 0.433705 4_1:+40869910 Msa0547560:three_prime_UTR
GGGAGATATTTGGGTTCCCT+TGG 0.436875 4_1:+40869643 Msa0547560:three_prime_UTR
TACCCACCAGTTGAAGCAAT+TGG 0.437493 4_1:-40868126 None:intergenic
GGTGGGTATGCTCAGCACTA+TGG 0.438801 4_1:+40868141 Msa0547560:CDS
AACCTTTGGGCCCCTATGGG+GGG 0.439527 4_1:-40868872 None:intergenic
CCACTCCTCCAAATCCTGTC+TGG 0.440497 4_1:-40864152 None:intergenic
GGAGAAGGTGCAAGAGAAAT+GGG 0.444244 4_1:-40868168 None:intergenic
AGTCATCTTCCCTTTGGGTA+AGG 0.444966 4_1:+40869408 Msa0547560:three_prime_UTR
GTAAACCTAGGGAGATATTT+GGG 0.446898 4_1:+40869634 Msa0547560:three_prime_UTR
AGTTGCATTGGTTCCTTGAA+AGG 0.449518 4_1:+40868970 Msa0547560:three_prime_UTR
AATTCATTGTGGCTAAACTA+AGG 0.450936 4_1:+40869468 Msa0547560:three_prime_UTR
TAATCACCAACAAAAGCTAT+AGG 0.452546 4_1:+40869008 Msa0547560:three_prime_UTR
AATGCAAACTGGTGGGGTGG+GGG 0.453309 4_1:+40861658 Msa0547560:five_prime_UTR
TGAAGTCTATAGATAGATCT+AGG 0.453443 4_1:-40861938 None:intergenic
CTTCGCCATATTGAAGATAT+GGG 0.453891 4_1:-40868020 None:intergenic
TAATTAACTTTGACCCATGA+AGG 0.456901 4_1:+40869102 Msa0547560:three_prime_UTR
TTTGCTCACCAACCATGGTT+AGG 0.457866 4_1:+40869675 Msa0547560:three_prime_UTR
GGATCTTCTTCTCAAGGTTG+TGG 0.461066 4_1:-40861872 None:intergenic
AGGGAGGAACATTAGGGTAA+TGG 0.461392 4_1:+40864122 Msa0547560:CDS
GACTTCAAGAAGCAATAACT+TGG 0.463253 4_1:-40868713 None:intergenic
ACCGTAGGGTAACTGTAATC+GGG 0.463847 4_1:-40865368 None:intergenic
GGGAGGAACATTAGGGTAAT+GGG 0.468258 4_1:+40864123 Msa0547560:CDS
TAGTATCATCAATCAACCTT+TGG 0.471189 4_1:+40868738 Msa0547560:three_prime_UTR
GCCGCCGGTAGTTGCGCCGC+CGG 0.471628 4_1:-40868046 None:intergenic
TAATGCAAACTGGTGGGGTG+GGG 0.471989 4_1:+40861657 Msa0547560:five_prime_UTR
AGGATCAATTCATTCTCTGC+TGG 0.472302 4_1:+40869900 Msa0547560:three_prime_UTR
ATTGTAAGAAATCATCGATT+GGG 0.472594 4_1:-40870038 None:intergenic
ACTTTCACTTTACCCTTCAT+GGG 0.473532 4_1:-40869115 None:intergenic
AATTGCTAATCACACCTCTC+TGG 0.475193 4_1:+40869229 Msa0547560:three_prime_UTR
CAGACAGGATTTGGAGGAGT+GGG 0.480274 4_1:+40864153 Msa0547560:CDS
AAACCTGATGGCAAGGCAGC+AGG 0.480985 4_1:-40868189 None:intergenic
GTCATCTTCCCTTTGGGTAA+GGG 0.484651 4_1:+40869409 Msa0547560:three_prime_UTR
CTAATTAACACTAAAGACTA+AGG 0.486901 4_1:-40869326 None:intergenic
TCATCTTCCCTTTGGGTAAG+GGG 0.487192 4_1:+40869410 Msa0547560:three_prime_UTR
GGAAACCTTTGGGCCCCTAT+GGG 0.488032 4_1:-40868875 None:intergenic
TACATAGAGAGGAAACCTTT+GGG 0.488749 4_1:-40868885 None:intergenic
TTGAGAACTACGTACATCAA+TGG 0.489696 4_1:+40869579 Msa0547560:three_prime_UTR
AAAAGCCCAAATTCCAATGA+TGG 0.490568 4_1:-40868829 None:intergenic
ATGACTCCAATTAATTTGGC+AGG 0.491636 4_1:+40862065 Msa0547560:CDS
TAGTATTGAATAATGCAAAC+TGG 0.494311 4_1:+40861647 Msa0547560:five_prime_UTR
GAATGGGAAAACTTAGCCCT+TGG 0.501467 4_1:+40869052 Msa0547560:three_prime_UTR
ATAATGCAAACTGGTGGGGT+GGG 0.501749 4_1:+40861656 Msa0547560:five_prime_UTR
TCTCCAATTGCTTCAACTGG+TGG 0.504755 4_1:+40868123 Msa0547560:CDS
CAAGCTCTCATAGCAGCATC+AGG 0.508307 4_1:-40862670 None:intergenic
TTAGAAGGATCTTCTTCTCA+AGG 0.509104 4_1:-40861878 None:intergenic
AAAGGGAGGAGATTGTGAAA+TGG 0.509619 4_1:-40869761 None:intergenic
GTTTATGGAAATGGACCAGC+TGG 0.512520 4_1:+40867958 Msa0547560:CDS
TATTGTAAGAAATCATCGAT+TGG 0.512765 4_1:-40870039 None:intergenic
GATGCTGCTCCTATAATTGA+TGG 0.515656 4_1:+40862697 Msa0547560:CDS
GATGGCAAGGCAGCAGGAGA+AGG 0.517316 4_1:-40868183 None:intergenic
GGAACCGGCGGCGCAACTAC+CGG 0.519759 4_1:+40868042 Msa0547560:CDS
GAAACCTTTGGGCCCCTATG+GGG 0.519998 4_1:-40868874 None:intergenic
ACTGGAAGATCCAAAGGCTA+TGG 0.530867 4_1:+40862221 Msa0547560:CDS
TTGCAAAATATTATCCTCTA+GGG 0.532532 4_1:-40862010 None:intergenic
AGTTTAGCAATCGTGGACAT+TGG 0.532861 4_1:+40869263 Msa0547560:three_prime_UTR
AAACACTTGCACGTAAACCT+AGG 0.535557 4_1:+40869622 Msa0547560:three_prime_UTR
GTAATGGGTTCTTTCCAGAC+AGG 0.536127 4_1:+40864138 Msa0547560:CDS
TATAGATAGATCTAGGTGAT+GGG 0.536729 4_1:-40861931 None:intergenic
GAAAATTTGTAGGAGGAGGA+GGG 0.539063 4_1:+40864103 Msa0547560:intron
CCTTGCTGGATGGCATAATG+AGG 0.539851 4_1:-40864204 None:intergenic
CAAAGAAGCAAGGTTGCAGT+TGG 0.540744 4_1:-40862728 None:intergenic
ATATTGAAGATATGGGTAGT+AGG 0.540954 4_1:-40868013 None:intergenic
AAAGTGAAAGTAATAAAGAA+TGG 0.542677 4_1:+40869127 Msa0547560:three_prime_UTR
CTCCAATTGCTTCAACTGGT+GGG 0.542942 4_1:+40868124 Msa0547560:CDS
CCAGTCATCATCCCTCCAGC+TGG 0.546713 4_1:-40867973 None:intergenic
GAATATTGAAACACCTGAGG+TGG 0.547295 4_1:-40868102 None:intergenic
TCTTTCCAGACAGGATTTGG+AGG 0.549169 4_1:+40864147 Msa0547560:CDS
GCTACTATGGTATGTACGGT+GGG 0.552444 4_1:+40867917 Msa0547560:CDS
GTAATTAGGAAATCTAAAGT+AGG 0.554338 4_1:+40869877 Msa0547560:three_prime_UTR
AATAATGCAAACTGGTGGGG+TGG 0.554708 4_1:+40861655 Msa0547560:five_prime_UTR
ATAGCCTTTGGATCTTCCAG+TGG 0.554952 4_1:-40862219 None:intergenic
TCACACCTCTCTGGATGAAG+AGG 0.555010 4_1:+40869238 Msa0547560:three_prime_UTR
TGCTGCTATGAGAGCTTGTG+TGG 0.555924 4_1:+40862675 Msa0547560:CDS
CCAGCTGGAGGGATGATGAC+TGG 0.557715 4_1:+40867973 Msa0547560:CDS
AAAGCCCAAATTCCAATGAT+GGG 0.557859 4_1:-40868828 None:intergenic
CTATAGATAGATCTAGGTGA+TGG 0.559793 4_1:-40861932 None:intergenic
CAGAGCTACTATGGTATGTA+CGG 0.561819 4_1:+40867913 Msa0547560:intron
TAGTAAGATCATCATCATCA+AGG 0.562193 4_1:+40862033 Msa0547560:five_prime_UTR
CCAGACAGGATTTGGAGGAG+TGG 0.563630 4_1:+40864152 Msa0547560:CDS
GGGAACCCAAATATCTCCCT+AGG 0.567995 4_1:-40869639 None:intergenic
GAGAGAGATTAAATAAAGGG+AGG 0.570102 4_1:-40869775 None:intergenic
TGGTGTTAACTACCCACCTC+AGG 0.572192 4_1:+40868089 Msa0547560:CDS
TTCACTTTGCTCACCAACCA+TGG 0.572317 4_1:+40869670 Msa0547560:three_prime_UTR
CTCATTATGCCATCCAGCAA+GGG 0.572637 4_1:+40864205 Msa0547560:CDS
GGGATATAACAAAGCTAACA+TGG 0.573239 4_1:-40870018 None:intergenic
ACCTATGTCCTAACCATGGT+TGG 0.576898 4_1:-40869683 None:intergenic
TATTGAATAATGCAAACTGG+TGG 0.578407 4_1:+40861650 Msa0547560:five_prime_UTR
AATTAACTTTGACCCATGAA+GGG 0.578430 4_1:+40869103 Msa0547560:three_prime_UTR
ATTCATTGTGGCTAAACTAA+GGG 0.579716 4_1:+40869469 Msa0547560:three_prime_UTR
CCTCATTATGCCATCCAGCA+AGG 0.580886 4_1:+40864204 Msa0547560:CDS
ATTAGGAAATCTAAAGTAGG+AGG 0.583122 4_1:+40869880 Msa0547560:three_prime_UTR
TGAGGGAAGGTTGCAGCTGA+AGG 0.584132 4_1:-40864186 None:intergenic
TTTCTTATGTAAATTCATTG+TGG 0.584655 4_1:+40869457 Msa0547560:three_prime_UTR
AATACAAGAAATTAAAGGCA+TGG 0.589123 4_1:-40869949 None:intergenic
ATAAAATTAACAGAGTATGA+AGG 0.590483 4_1:-40869828 None:intergenic
ATAGATCTAGGTGATGGGGT+TGG 0.595388 4_1:-40861926 None:intergenic
CCATATCTTCAATATGGCGA+AGG 0.596896 4_1:+40868021 Msa0547560:CDS
AACACTTGCACGTAAACCTA+GGG 0.597365 4_1:+40869623 Msa0547560:three_prime_UTR
GAAGTAGAAACCTGATGGCA+AGG 0.598302 4_1:-40868196 None:intergenic
GGCGGCTACACTTCTGGCCA+AGG 0.598379 4_1:+40868063 Msa0547560:CDS
ACGTACATCAATGGAATGTG+TGG 0.600020 4_1:+40869588 Msa0547560:three_prime_UTR
ACCAACCATGGTTAGGACAT+AGG 0.600992 4_1:+40869682 Msa0547560:three_prime_UTR
ACTCTCCAAATTACATAGAG+AGG 0.601172 4_1:-40868896 None:intergenic
AGAGGAAAGTTTAGCAATCG+TGG 0.603847 4_1:+40869256 Msa0547560:three_prime_UTR
ATTGAATAATGCAAACTGGT+GGG 0.605724 4_1:+40861651 Msa0547560:five_prime_UTR
ATAAGGTATCCCTTGCTGGA+TGG 0.606510 4_1:-40864214 None:intergenic
GTTATCACTGACAAAGCCAC+TGG 0.609344 4_1:+40862203 Msa0547560:CDS
ACTTCAAGAAGCAATAACTT+GGG 0.610938 4_1:-40868712 None:intergenic
GGAAAACTTAGCCCTTGGAA+AGG 0.612258 4_1:+40869057 Msa0547560:three_prime_UTR
CCCCGATTACAGTTACCCTA+CGG 0.615766 4_1:+40865367 Msa0547560:CDS
CCGTAGGGTAACTGTAATCG+GGG 0.616563 4_1:-40865367 None:intergenic
CTGTGCCACAGGCGTGACAA+TGG 0.617286 4_1:+40868616 Msa0547560:intron
TATGGAAATGGACCAGCTGG+AGG 0.625601 4_1:+40867961 Msa0547560:CDS
GGTAGTTAACACCATAACCT+TGG 0.625763 4_1:-40868080 None:intergenic
TTTGGACACCCAAAGAAGCA+AGG 0.627687 4_1:-40862738 None:intergenic
AAAGCCACTGGAAGATCCAA+AGG 0.627799 4_1:+40862215 Msa0547560:CDS
CTTGCTGGATGGCATAATGA+GGG 0.627859 4_1:-40864203 None:intergenic
AATTTGTAGGAGGAGGAGGG+AGG 0.630642 4_1:+40864106 Msa0547560:intron
ATAGATAGATCTAGGTGATG+GGG 0.630730 4_1:-40861930 None:intergenic
ACCGGCGGCGCAACTACCGG+CGG 0.633500 4_1:+40868045 Msa0547560:CDS
ATGGAAATGGACCAGCTGGA+GGG 0.637061 4_1:+40867962 Msa0547560:CDS
TTGGCCAGAAGTGTAGCCGC+CGG 0.638787 4_1:-40868061 None:intergenic
ACTTAGCCCTTGGAAAGGCT+AGG 0.639170 4_1:+40869062 Msa0547560:three_prime_UTR
AGCTACTATGGTATGTACGG+TGG 0.639695 4_1:+40867916 Msa0547560:CDS
TCATAGCTAGCTAACCCTAG+AGG 0.642107 4_1:+40861996 Msa0547560:five_prime_UTR
AAACACCATGGTTAGACCAA+AGG 0.643399 4_1:-40868754 None:intergenic
GGGCCTATGATAATGATGAG+TGG 0.643771 4_1:-40868852 None:intergenic
AAGCCTTCAACACCAAAACA+TGG 0.645444 4_1:+40862766 Msa0547560:CDS
TGAGCAAAGTGAAGTAACCA+AGG 0.649197 4_1:-40869660 None:intergenic
AATATTGAAACACCTGAGGT+GGG 0.650438 4_1:-40868101 None:intergenic
ATCAACCTTTGGTCTAACCA+TGG 0.651912 4_1:+40868749 Msa0547560:three_prime_UTR
TTGAATAATGCAAACTGGTG+GGG 0.662572 4_1:+40861652 Msa0547560:five_prime_UTR
CAATATGGCGAAGGAACCGG+CGG 0.663093 4_1:+40868030 Msa0547560:CDS
CTGGATGGCATAATGAGGGA+AGG 0.669727 4_1:-40864199 None:intergenic
CTACTATGGTATGTACGGTG+GGG 0.669988 4_1:+40867918 Msa0547560:CDS
ACTTTCCTCTTCATCCAGAG+AGG 0.670728 4_1:-40869243 None:intergenic
GAGCAAAGTGAAGTAACCAA+GGG 0.684205 4_1:-40869659 None:intergenic
ATTCACCTATGTCCTAACCA+TGG 0.691036 4_1:-40869687 None:intergenic
GATATGAGTCTCTAACGATG+AGG 0.693503 4_1:-40868656 None:intergenic
GGAGAATATTGAAACACCTG+AGG 0.699373 4_1:-40868105 None:intergenic
CGTAGGGTAACTGTAATCGG+GGG 0.726499 4_1:-40865366 None:intergenic
GCTGGAGGGATGATGACTGG+TGG 0.745650 4_1:+40867976 Msa0547560:CDS
GTGTGATGAGAGAAACACCA+TGG 0.786298 4_1:-40868766 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTAAAATTTTAAAT+CGG - chr4_1:40866464-40866483 None:intergenic 0.0%
!! AAATAATAATAATTTGGAAA+AGG - chr4_1:40863170-40863189 None:intergenic 10.0%
!! AAACACAAATAATAATAATT+TGG - chr4_1:40863176-40863195 None:intergenic 10.0%
!! AAATAGTTAAATAATATTTG+AGG - chr4_1:40865076-40865095 None:intergenic 10.0%
!!! TATTTTATGATTTTTATTTG+AGG - chr4_1:40865171-40865190 None:intergenic 10.0%
!! TGAAATTTAAATTAATCAAA+TGG - chr4_1:40865916-40865935 None:intergenic 10.0%
!! AAAATTAATTAAAACTATGT+TGG - chr4_1:40866020-40866039 None:intergenic 10.0%
!!! TTAGTATGTTAATTTTTAAT+TGG + chr4_1:40866146-40866165 Msa0547560:intron 10.0%
!!! AAATACTTCTTTTTTTTTTT+AGG + chr4_1:40866275-40866294 Msa0547560:intron 10.0%
!!! AATACTTCTTTTTTTTTTTA+GGG + chr4_1:40866276-40866295 Msa0547560:intron 10.0%
!! ATATATTAAGAAACTAAATA+AGG + chr4_1:40866486-40866505 Msa0547560:intron 10.0%
!!! AGTAATTTATAATATTCTTT+TGG - chr4_1:40866656-40866675 None:intergenic 10.0%
!! TATGACTAAATTTAAATAAA+TGG - chr4_1:40867024-40867043 None:intergenic 10.0%
!! AATCTTTCAAAAAAATATTA+TGG + chr4_1:40867286-40867305 Msa0547560:intron 10.0%
!!! CAAATTAATTTTCATAAAAA+AGG + chr4_1:40869365-40869384 Msa0547560:three_prime_UTR 10.0%
!! AAAAAGATACTAAATTTAGA+AGG - chr4_1:40861896-40861915 None:intergenic 15.0%
!! TCTTTATTAATCTTTCATTA+TGG + chr4_1:40862843-40862862 Msa0547560:intron 15.0%
!!! TTAACATTTAGAGATATTTT+TGG - chr4_1:40862884-40862903 None:intergenic 15.0%
!! ATAAGATGAGTTTATTAATT+AGG - chr4_1:40862968-40862987 None:intergenic 15.0%
!! TATATAGGAAAATATAGTTT+AGG - chr4_1:40863471-40863490 None:intergenic 15.0%
!!! GTTTGAAGTTAAATATATAT+AGG - chr4_1:40863486-40863505 None:intergenic 15.0%
!!! TTTTCTTTTGAAATATTGAA+TGG + chr4_1:40864053-40864072 Msa0547560:intron 15.0%
!! GCATATTAAATTATATTGAA+TGG - chr4_1:40864389-40864408 None:intergenic 15.0%
!! GTAAAATTAATTGAGTAATT+TGG - chr4_1:40865034-40865053 None:intergenic 15.0%
!!! ATTTTATGAAACTTTTTTGA+AGG - chr4_1:40865144-40865163 None:intergenic 15.0%
!! ATTTCATGAATAATATCATT+TGG - chr4_1:40866102-40866121 None:intergenic 15.0%
!!! AAAAGAAGTATTTTATGAAT+GGG - chr4_1:40866268-40866287 None:intergenic 15.0%
!!! AAAAAGAAGTATTTTATGAA+TGG - chr4_1:40866269-40866288 None:intergenic 15.0%
!!! ATATGAACAACAATTTTTTA+AGG - chr4_1:40867120-40867139 None:intergenic 15.0%
!!! TATTTTTTTGAAAGATTGTT+TGG - chr4_1:40867283-40867302 None:intergenic 15.0%
!! CATATATAGATATATATACA+TGG + chr4_1:40867314-40867333 Msa0547560:intron 15.0%
!! TTTCACTTATAATAAAAATG+TGG + chr4_1:40867837-40867856 Msa0547560:intron 15.0%
!!! ATAATCATGGTTTTAAATTA+GGG + chr4_1:40868232-40868251 Msa0547560:intron 15.0%
!!! TTTTCTTGAACAAAAAAAAT+GGG - chr4_1:40868947-40868966 None:intergenic 15.0%
!!! TTTTTCTTGAACAAAAAAAA+TGG - chr4_1:40868948-40868967 None:intergenic 15.0%
!! AACATAATACAAGAAATTAA+AGG - chr4_1:40869957-40869976 None:intergenic 15.0%
!! TACATAAGTGTTACATAATA+AGG - chr4_1:40861706-40861725 None:intergenic 20.0%
!!! AAGAAATATTTTGAGCAATT+TGG + chr4_1:40862161-40862180 Msa0547560:CDS 20.0%
!! AATTTATTATTCCAAGTAGA+AGG + chr4_1:40862319-40862338 Msa0547560:intron 20.0%
!!! AATTTGTTTGTTTCCAATTT+AGG + chr4_1:40862633-40862652 Msa0547560:intron 20.0%
!!! GTATTAATATTACCATGTTT+TGG - chr4_1:40862781-40862800 None:intergenic 20.0%
!!! AATATTTCATGCATGTTTTT+GGG + chr4_1:40863333-40863352 Msa0547560:intron 20.0%
!!! TTTTTTTTGGATACTTCTTA+GGG - chr4_1:40863383-40863402 None:intergenic 20.0%
!!! TTTTTTTTTGGATACTTCTT+AGG - chr4_1:40863384-40863403 None:intergenic 20.0%
!! AAACCAAAAATATCACTAAA+GGG - chr4_1:40863431-40863450 None:intergenic 20.0%
!! AAAACCAAAAATATCACTAA+AGG - chr4_1:40863432-40863451 None:intergenic 20.0%
!! AAAAATACAGAATACATTGT+TGG - chr4_1:40863724-40863743 None:intergenic 20.0%
!!! TTTTGATGTTTTTTACTGAA+TGG - chr4_1:40863998-40864017 None:intergenic 20.0%
!! ATGTAATGATGAAAATTTGT+AGG + chr4_1:40864093-40864112 Msa0547560:intron 20.0%
!! TATAATTTAATATGCTAGCT+AGG + chr4_1:40864394-40864413 Msa0547560:intron 20.0%
!!! ACTGATTTAATCTATAAGAT+AGG + chr4_1:40864802-40864821 Msa0547560:intron 20.0%
!! CTGATTTAATCTATAAGATA+GGG + chr4_1:40864803-40864822 Msa0547560:intron 20.0%
!! TATGATTCTGTTTGATATAA+CGG - chr4_1:40865252-40865271 None:intergenic 20.0%
!!! TCTATATATACCTTTTACTT+AGG + chr4_1:40865424-40865443 Msa0547560:intron 20.0%
!!! TCAATTTATCTTTTTTTGAG+AGG + chr4_1:40865586-40865605 Msa0547560:intron 20.0%
!!! ACTTTTTTAATGTGAATAAG+TGG + chr4_1:40865658-40865677 Msa0547560:intron 20.0%
!! CTAGAACTTATACTAAAATT+AGG - chr4_1:40865826-40865845 None:intergenic 20.0%
!! ATGAATAATATCATTTGGTA+TGG - chr4_1:40866097-40866116 None:intergenic 20.0%
!! TTTAATTGGTTAGTATTTGT+TGG + chr4_1:40866160-40866179 Msa0547560:intron 20.0%
!!! TTTTATGAATGGGAATTATA+AGG - chr4_1:40866258-40866277 None:intergenic 20.0%
!!! AAATTCTATTTTTCCCAATT+TGG + chr4_1:40866690-40866709 Msa0547560:intron 20.0%
!!! AATTCTATTTTTCCCAATTT+GGG + chr4_1:40866691-40866710 Msa0547560:intron 20.0%
!! ATGTCAAAATCATAAGATAT+AGG + chr4_1:40866717-40866736 Msa0547560:intron 20.0%
!!! TTTTTTTCCTTTCTAAAAAG+TGG - chr4_1:40866983-40867002 None:intergenic 20.0%
!! AATTTAGTCATAAACTTTCA+CGG + chr4_1:40867032-40867051 Msa0547560:intron 20.0%
!!! ATTGGATTAAATAATTTTGG+GGG - chr4_1:40867077-40867096 None:intergenic 20.0%
!!! GATTGGATTAAATAATTTTG+GGG - chr4_1:40867078-40867097 None:intergenic 20.0%
!!! GGATTGGATTAAATAATTTT+GGG - chr4_1:40867079-40867098 None:intergenic 20.0%
!!! TGGATTGGATTAAATAATTT+TGG - chr4_1:40867080-40867099 None:intergenic 20.0%
!! AATAAAAATTCTACAACCAT+AGG - chr4_1:40867195-40867214 None:intergenic 20.0%
!!! TTTTAAAATCAAGCATAACA+AGG - chr4_1:40867391-40867410 None:intergenic 20.0%
!!! CAAAAATGACTTTTTTTTTG+TGG + chr4_1:40867440-40867459 Msa0547560:intron 20.0%
!!! TGTTATAATTTCTTGATGAT+TGG - chr4_1:40867619-40867638 None:intergenic 20.0%
!!! CATAATCATGGTTTTAAATT+AGG + chr4_1:40868231-40868250 Msa0547560:intron 20.0%
!! TTTCTTGAACAAAAAAAATG+GGG - chr4_1:40868946-40868965 None:intergenic 20.0%
!! AAAGTGAAAGTAATAAAGAA+TGG + chr4_1:40869127-40869146 Msa0547560:three_prime_UTR 20.0%
!! TTTCTTATGTAAATTCATTG+TGG + chr4_1:40869457-40869476 Msa0547560:three_prime_UTR 20.0%
!! ATAAAATTAACAGAGTATGA+AGG - chr4_1:40869831-40869850 None:intergenic 20.0%
!! GTTTAAGTCTATGTATTATT+TGG + chr4_1:40869851-40869870 Msa0547560:three_prime_UTR 20.0%
!! GTATTATTTGGATTGTAATT+AGG + chr4_1:40869863-40869882 Msa0547560:three_prime_UTR 20.0%
!! TAGTATTGAATAATGCAAAC+TGG + chr4_1:40861647-40861666 Msa0547560:five_prime_UTR 25.0%
! AGATAGAAAAAAAGAGGAAA+GGG - chr4_1:40861733-40861752 None:intergenic 25.0%
! AAGATAGAAAAAAAGAGGAA+AGG - chr4_1:40861734-40861753 None:intergenic 25.0%
! AGCAAAAGATAGAAAAAAAG+AGG - chr4_1:40861739-40861758 None:intergenic 25.0%
! TTTGACCAAAAAAAAACACT+TGG + chr4_1:40861964-40861983 Msa0547560:five_prime_UTR 25.0%
! TTGACCAAAAAAAAACACTT+GGG + chr4_1:40861965-40861984 Msa0547560:five_prime_UTR 25.0%
! TTGCAAAATATTATCCTCTA+GGG - chr4_1:40862013-40862032 None:intergenic 25.0%
! ATTGCAAAATATTATCCTCT+AGG - chr4_1:40862014-40862033 None:intergenic 25.0%
! TTCAAATATAGAGAGAAGAT+AGG - chr4_1:40862256-40862275 None:intergenic 25.0%
! ATATTGAAACTCTTTACACT+TGG - chr4_1:40863318-40863337 None:intergenic 25.0%
!! CAATATTTCATGCATGTTTT+TGG + chr4_1:40863332-40863351 Msa0547560:intron 25.0%
!! ATTCCCTTTAGTGATATTTT+TGG + chr4_1:40863425-40863444 Msa0547560:intron 25.0%
! AAAATCCACATGCATTATTA+CGG + chr4_1:40863768-40863787 Msa0547560:intron 25.0%
!!! ATTTTGCTCTTGTTTTTTTG+TGG + chr4_1:40863851-40863870 Msa0547560:intron 25.0%
!!! TTTTGCTCTTGTTTTTTTGT+GGG + chr4_1:40863852-40863871 Msa0547560:intron 25.0%
! CTCAAATTTGTATGTATGTT+TGG + chr4_1:40863921-40863940 Msa0547560:intron 25.0%
!!! ATGTATGTTTGGACTTTTTT+AGG + chr4_1:40863932-40863951 Msa0547560:intron 25.0%
! TAATGATGAAAATTTGTAGG+AGG + chr4_1:40864096-40864115 Msa0547560:intron 25.0%
! GGATACCTTATAATGTTTAT+GGG + chr4_1:40864226-40864245 Msa0547560:CDS 25.0%
! TCATACCCATAAACATTATA+AGG - chr4_1:40864234-40864253 None:intergenic 25.0%
! CCTTAAAGTACAAATGTAAA+TGG - chr4_1:40864321-40864340 None:intergenic 25.0%
! CCATTTACATTTGTACTTTA+AGG + chr4_1:40864318-40864337 Msa0547560:intron 25.0%
!!! TTACATTTGTACTTTAAGGT+TGG + chr4_1:40864322-40864341 Msa0547560:intron 25.0%
! AAAGAATACTACATATGAAC+TGG - chr4_1:40864455-40864474 None:intergenic 25.0%
! TGATGAAAAAGTTACATCAA+GGG - chr4_1:40864517-40864536 None:intergenic 25.0%
! TTGATGAAAAAGTTACATCA+AGG - chr4_1:40864518-40864537 None:intergenic 25.0%
! CATATAGAGAAATATGTGTA+AGG - chr4_1:40864541-40864560 None:intergenic 25.0%
!! CTTTCAAAGTTGTTATTCAT+TGG + chr4_1:40864716-40864735 Msa0547560:intron 25.0%
! GATAAAATGAGAGATAAAGT+AGG + chr4_1:40864827-40864846 Msa0547560:intron 25.0%
! ATTATTTGAAAGAGAGTAGT+TGG - chr4_1:40865510-40865529 None:intergenic 25.0%
! TTGTTAAGTAGTTTAGTGAT+TGG + chr4_1:40865629-40865648 Msa0547560:intron 25.0%
!!! AGTTCTAGAATTAATTTGTG+TGG + chr4_1:40865838-40865857 Msa0547560:intron 25.0%
!!! TAGAATTAATTTGTGTGGTA+GGG + chr4_1:40865843-40865862 Msa0547560:intron 25.0%
!! TCAAATGGTATTTTCAAAGT+TGG - chr4_1:40865901-40865920 None:intergenic 25.0%
! TGATCAATTCTACCATTTAA+TGG + chr4_1:40865986-40866005 Msa0547560:intron 25.0%
! GATCAATTCTACCATTTAAT+GGG + chr4_1:40865987-40866006 Msa0547560:intron 25.0%
! TTGGAAATAATCCCATTAAA+TGG - chr4_1:40866001-40866020 None:intergenic 25.0%
!!! TCATGCACAACTAATTTTTT+GGG - chr4_1:40866434-40866453 None:intergenic 25.0%
!!! TTCATGCACAACTAATTTTT+TGG - chr4_1:40866435-40866454 None:intergenic 25.0%
! AAAAAATTAGTTGTGCATGA+AGG + chr4_1:40866434-40866453 Msa0547560:intron 25.0%
!!! ATTCTATTTTTCCCAATTTG+GGG + chr4_1:40866692-40866711 Msa0547560:intron 25.0%
! AAATCATAAGATATAGGTGA+TGG + chr4_1:40866723-40866742 Msa0547560:intron 25.0%
! TCTTTGATACCTATATTTGT+GGG - chr4_1:40866749-40866768 None:intergenic 25.0%
! ACAAATATAGGTATCAAAGA+GGG + chr4_1:40866749-40866768 Msa0547560:intron 25.0%
! TCATCAATTATATGCTGTTA+AGG - chr4_1:40866887-40866906 None:intergenic 25.0%
!!! ACAATCATTTGTTGTTTCTA+TGG - chr4_1:40866912-40866931 None:intergenic 25.0%
! ATAGAAACAACAAATGATTG+TGG + chr4_1:40866911-40866930 Msa0547560:intron 25.0%
!!! TTTCTTTCCACTTTTTAGAA+AGG + chr4_1:40866973-40866992 Msa0547560:intron 25.0%
!! TTGGATTAAATAATTTTGGG+GGG - chr4_1:40867076-40867095 None:intergenic 25.0%
! TACAATACAAAAGTTTCCAT+TGG + chr4_1:40867167-40867186 Msa0547560:intron 25.0%
! AACAAAAACAAAAATCAGAG+TGG - chr4_1:40867358-40867377 None:intergenic 25.0%
!!! AAATGACTTTTTTTTTGTGG+TGG + chr4_1:40867443-40867462 Msa0547560:intron 25.0%
!! ATTATTTTCTGAGCATAACA+AGG - chr4_1:40867648-40867667 None:intergenic 25.0%
! CTACAACAAAATGAAATTCT+CGG - chr4_1:40867677-40867696 None:intergenic 25.0%
!! CGTAATGGAAAATAAATATG+TGG + chr4_1:40867870-40867889 Msa0547560:intron 25.0%
! TGACTACATCTATTAAATAG+CGG - chr4_1:40868331-40868350 None:intergenic 25.0%
! GTTTATCTGATTATGCAATT+TGG + chr4_1:40868547-40868566 Msa0547560:intron 25.0%
! TGGTGATATATGTATTAATG+AGG + chr4_1:40868567-40868586 Msa0547560:intron 25.0%
! TCAAGAAAAAAAAGTTGCAT+TGG + chr4_1:40868958-40868977 Msa0547560:three_prime_UTR 25.0%
!!! TTGGTGATTAAACATCTTTT+TGG - chr4_1:40868998-40869017 None:intergenic 25.0%
! AATTGAAGAATCTCACAAAT+AGG + chr4_1:40869166-40869185 Msa0547560:three_prime_UTR 25.0%
! TAGATGTTACCATACAAAAA+AGG - chr4_1:40869297-40869316 None:intergenic 25.0%
! CTAATTAACACTAAAGACTA+AGG - chr4_1:40869329-40869348 None:intergenic 25.0%
!! CTTAGTCTTTAGTGTTAATT+AGG + chr4_1:40869327-40869346 Msa0547560:three_prime_UTR 25.0%
!! AAGATGACTAATTGGTTTAT+TGG - chr4_1:40869397-40869416 None:intergenic 25.0%
! CTCCTAAAAGTAACTAAATT+GGG - chr4_1:40869503-40869522 None:intergenic 25.0%
!!! CAATTTAGTTACTTTTAGGA+GGG + chr4_1:40869502-40869521 Msa0547560:three_prime_UTR 25.0%
! ATGTACTACATATGCTAATT+GGG - chr4_1:40869547-40869566 None:intergenic 25.0%
! AGAGAGAGAGATTAAATAAA+GGG - chr4_1:40869781-40869800 None:intergenic 25.0%
!! GTAATTAGGAAATCTAAAGT+AGG + chr4_1:40869877-40869896 Msa0547560:three_prime_UTR 25.0%
! AATACAAGAAATTAAAGGCA+TGG - chr4_1:40869952-40869971 None:intergenic 25.0%
!! ATTGTAAGAAATCATCGATT+GGG - chr4_1:40870041-40870060 None:intergenic 25.0%
! TATTGTAAGAAATCATCGAT+TGG - chr4_1:40870042-40870061 None:intergenic 25.0%
TATTGAATAATGCAAACTGG+TGG + chr4_1:40861650-40861669 Msa0547560:five_prime_UTR 30.0%
ATTGAATAATGCAAACTGGT+GGG + chr4_1:40861651-40861670 Msa0547560:five_prime_UTR 30.0%
GATAGAAAAAAAGAGGAAAG+GGG - chr4_1:40861732-40861751 None:intergenic 30.0%
TGAATAGAAGAGAGACAATT+AGG - chr4_1:40861822-40861841 None:intergenic 30.0%
TATAGATAGATCTAGGTGAT+GGG - chr4_1:40861934-40861953 None:intergenic 30.0%
TGAAGTCTATAGATAGATCT+AGG - chr4_1:40861941-40861960 None:intergenic 30.0%
!!! ACTTCCCAAGTGTTTTTTTT+TGG - chr4_1:40861972-40861991 None:intergenic 30.0%
TAGTAAGATCATCATCATCA+AGG + chr4_1:40862033-40862052 Msa0547560:five_prime_UTR 30.0%
CAACATGACTCCAATTAATT+TGG + chr4_1:40862061-40862080 Msa0547560:exon 30.0%
AATTGTCCTGCCAAATTAAT+TGG - chr4_1:40862074-40862093 None:intergenic 30.0%
! ATTAATTTGGCAGGACAATT+TGG + chr4_1:40862074-40862093 Msa0547560:CDS 30.0%
! ACATACACCAAAGTTTTTGT+TGG + chr4_1:40862104-40862123 Msa0547560:CDS 30.0%
TTTAGATCAATCCTTCTACT+TGG - chr4_1:40862333-40862352 None:intergenic 30.0%
CTAGTGAAAGAAACTAAACA+TGG - chr4_1:40862490-40862509 None:intergenic 30.0%
ATTAACATTAAGCTTGTACG+TGG - chr4_1:40863140-40863159 None:intergenic 30.0%
ACGTACAAGCTTAATGTTAA+TGG + chr4_1:40863139-40863158 Msa0547560:intron 30.0%
!!! AGAGTAGACTGCTTTTTTTT+TGG - chr4_1:40863396-40863415 None:intergenic 30.0%
!!! CTAGTAGTGTTTTAAGAACT+AGG - chr4_1:40863513-40863532 None:intergenic 30.0%
AAATCCACATGCATTATTAC+GGG + chr4_1:40863769-40863788 Msa0547560:intron 30.0%
GGGATACCTTATAATGTTTA+TGG + chr4_1:40864225-40864244 Msa0547560:CDS 30.0%
TATAGAAAAGAGAGAAAGAG+AGG - chr4_1:40864293-40864312 None:intergenic 30.0%
!!! GGTTTTGTTGTTTTATGAGT+TGG - chr4_1:40864368-40864387 None:intergenic 30.0%
GATGAAAAAGTTACATCAAG+GGG - chr4_1:40864516-40864535 None:intergenic 30.0%
! CAAAGTTGTTATTCATTGGT+AGG + chr4_1:40864720-40864739 Msa0547560:intron 30.0%
ATAGAGAATGGAAGAATTCA+AGG - chr4_1:40865326-40865345 None:intergenic 30.0%
! TTCTTCCATTCTCTATTTTC+AGG + chr4_1:40865330-40865349 Msa0547560:intron 30.0%
! AGTTAAAAGTACATACCGTA+GGG - chr4_1:40865385-40865404 None:intergenic 30.0%
! AAGTTAAAAGTACATACCGT+AGG - chr4_1:40865386-40865405 None:intergenic 30.0%
!! CTAGAATTAATTTGTGTGGT+AGG + chr4_1:40865842-40865861 Msa0547560:intron 30.0%
! AATGGTATTTTCAAAGTTGG+AGG - chr4_1:40865898-40865917 None:intergenic 30.0%
ATCACTTTATTGAACACTCT+TGG - chr4_1:40866382-40866401 None:intergenic 30.0%
!! TTCTATTTTTCCCAATTTGG+GGG + chr4_1:40866693-40866712 Msa0547560:intron 30.0%
CTCTTTGATACCTATATTTG+TGG - chr4_1:40866750-40866769 None:intergenic 30.0%
CACAAATATAGGTATCAAAG+AGG + chr4_1:40866748-40866767 Msa0547560:intron 30.0%
AGTGGAAAGAAATAGAACAA+AGG - chr4_1:40866965-40866984 None:intergenic 30.0%
AAAAAACACAGTGATGTTTG+TGG + chr4_1:40866997-40867016 Msa0547560:intron 30.0%
AACAATGCATAAGATATGCA+AGG - chr4_1:40867488-40867507 None:intergenic 30.0%
!!! TGTGGTTTTTTGAAACGTAA+TGG + chr4_1:40867855-40867874 Msa0547560:intron 30.0%
AATATGTGGTTGTAACGTAA+TGG + chr4_1:40867884-40867903 Msa0547560:intron 30.0%
ATATTGAAGATATGGGTAGT+AGG - chr4_1:40868016-40868035 None:intergenic 30.0%
TACTACCCATATCTTCAATA+TGG + chr4_1:40868015-40868034 Msa0547560:CDS 30.0%
TCACTATACTCTCATAATCA+TGG + chr4_1:40868219-40868238 Msa0547560:intron 30.0%
TAAGTTCAACTATCGAGATT+TGG + chr4_1:40868429-40868448 Msa0547560:intron 30.0%
TAAGTTCAACTATCGAGATT+TGG + chr4_1:40868429-40868448 Msa0547560:intron 30.0%
ACTTCAAGAAGCAATAACTT+GGG - chr4_1:40868715-40868734 None:intergenic 30.0%
TAGTATCATCAATCAACCTT+TGG + chr4_1:40868738-40868757 Msa0547560:three_prime_UTR 30.0%
!!! AATGATGGGCTTTTTTTCTT+TGG - chr4_1:40868817-40868836 None:intergenic 30.0%
AAAGAAAAAAAGCCCATCAT+TGG + chr4_1:40868816-40868835 Msa0547560:three_prime_UTR 30.0%
TTTCCACTCATCATTATCAT+AGG + chr4_1:40868849-40868868 Msa0547560:three_prime_UTR 30.0%
TTGAACAAAAAAAATGGGGA+GGG - chr4_1:40868942-40868961 None:intergenic 30.0%
TAATCACCAACAAAAGCTAT+AGG + chr4_1:40869008-40869027 Msa0547560:three_prime_UTR 30.0%
! CTATTTCCTATAGCTTTTGT+TGG - chr4_1:40869017-40869036 None:intergenic 30.0%
! AGCTAAGTTGGAAAAATGAA+TGG + chr4_1:40869035-40869054 Msa0547560:three_prime_UTR 30.0%
! GCTAAGTTGGAAAAATGAAT+GGG + chr4_1:40869036-40869055 Msa0547560:three_prime_UTR 30.0%
TAATTAACTTTGACCCATGA+AGG + chr4_1:40869102-40869121 Msa0547560:three_prime_UTR 30.0%
AATTAACTTTGACCCATGAA+GGG + chr4_1:40869103-40869122 Msa0547560:three_prime_UTR 30.0%
TGTTACCATACAAAAAAGGT+GGG - chr4_1:40869293-40869312 None:intergenic 30.0%
ATGTTACCATACAAAAAAGG+TGG - chr4_1:40869294-40869313 None:intergenic 30.0%
AATTCATTGTGGCTAAACTA+AGG + chr4_1:40869468-40869487 Msa0547560:three_prime_UTR 30.0%
ATTCATTGTGGCTAAACTAA+GGG + chr4_1:40869469-40869488 Msa0547560:three_prime_UTR 30.0%
!!! AGCCCAATTTAGTTACTTTT+AGG + chr4_1:40869498-40869517 Msa0547560:three_prime_UTR 30.0%
CCTCCTAAAAGTAACTAAAT+TGG - chr4_1:40869504-40869523 None:intergenic 30.0%
!!! CCAATTTAGTTACTTTTAGG+AGG + chr4_1:40869501-40869520 Msa0547560:three_prime_UTR 30.0%
CATGTACTACATATGCTAAT+TGG - chr4_1:40869548-40869567 None:intergenic 30.0%
GAGAGAGAGAGATTAAATAA+AGG - chr4_1:40869782-40869801 None:intergenic 30.0%
ATTTAATCTCTCTCTCTCTA+TGG + chr4_1:40869784-40869803 Msa0547560:three_prime_UTR 30.0%
! TGGCAACTTTTAAATTGAGA+TGG + chr4_1:40869804-40869823 Msa0547560:three_prime_UTR 30.0%
! ATTAGGAAATCTAAAGTAGG+AGG + chr4_1:40869880-40869899 Msa0547560:three_prime_UTR 30.0%
TTGAATAATGCAAACTGGTG+GGG + chr4_1:40861652-40861671 Msa0547560:five_prime_UTR 35.0%
TTAGAAGGATCTTCTTCTCA+AGG - chr4_1:40861881-40861900 None:intergenic 35.0%
ATAGATAGATCTAGGTGATG+GGG - chr4_1:40861933-40861952 None:intergenic 35.0%
CTATAGATAGATCTAGGTGA+TGG - chr4_1:40861935-40861954 None:intergenic 35.0%
! ATGACTCCAATTAATTTGGC+AGG + chr4_1:40862065-40862084 Msa0547560:CDS 35.0%
! TACACCAAAGTTTTTGTTGG+AGG + chr4_1:40862107-40862126 Msa0547560:CDS 35.0%
CAATCCTCCAACAAAAACTT+TGG - chr4_1:40862114-40862133 None:intergenic 35.0%
! CAAAGTTTTTGTTGGAGGAT+TGG + chr4_1:40862112-40862131 Msa0547560:CDS 35.0%
GATTGAATCTCAATGAATCG+TGG + chr4_1:40862415-40862434 Msa0547560:intron 35.0%
TCACGAAAAGTGACCTAAAT+TGG - chr4_1:40862649-40862668 None:intergenic 35.0%
GCTCTTCTACCATCAATTAT+AGG - chr4_1:40862709-40862728 None:intergenic 35.0%
!!! TTACCATGTTTTGGTGTTGA+AGG - chr4_1:40862772-40862791 None:intergenic 35.0%
!!! ATTGTTGGTTTTTGTCTTGC+AGG - chr4_1:40863709-40863728 None:intergenic 35.0%
TGATGAAAATTTGTAGGAGG+AGG + chr4_1:40864099-40864118 Msa0547560:intron 35.0%
ATACTACATATGAACTGGCA+AGG - chr4_1:40864450-40864469 None:intergenic 35.0%
GAAGCTATAAGTAGCAAAAG+TGG - chr4_1:40864635-40864654 None:intergenic 35.0%
! TTGCTACTTATAGCTTCACA+TGG + chr4_1:40864638-40864657 Msa0547560:intron 35.0%
! TGCTACTTATAGCTTCACAT+GGG + chr4_1:40864639-40864658 Msa0547560:intron 35.0%
GAGTACCTGAAAATAGAGAA+TGG - chr4_1:40865338-40865357 None:intergenic 35.0%
CAAAACGCATCCTAAGTAAA+AGG - chr4_1:40865437-40865456 None:intergenic 35.0%
AGATCACAAATCTTTCACGT+AGG - chr4_1:40865762-40865781 None:intergenic 35.0%
CAACTGAAATTTGTGTAGTC+AGG - chr4_1:40866074-40866093 None:intergenic 35.0%
GGATTAATAAAGGTGGTTTG+AGG - chr4_1:40866200-40866219 None:intergenic 35.0%
!! GTTAAGGGGTGGATTAATAA+AGG - chr4_1:40866210-40866229 None:intergenic 35.0%
!! GAATTATAAGGCTGATTTGG+TGG - chr4_1:40866246-40866265 None:intergenic 35.0%
TGGGAATTATAAGGCTGATT+TGG - chr4_1:40866249-40866268 None:intergenic 35.0%
! TTTTGACATACCCCCAAATT+GGG - chr4_1:40866706-40866725 None:intergenic 35.0%
!! ATTTTGACATACCCCCAAAT+TGG - chr4_1:40866707-40866726 None:intergenic 35.0%
! TCAAGCTTGCTTATGAATGT+GGG + chr4_1:40866790-40866809 Msa0547560:intron 35.0%
TGAGCTGTAGTGAAAAAAGT+TGG - chr4_1:40866818-40866837 None:intergenic 35.0%
TTATTGTACCCTACAGAATG+TGG + chr4_1:40866838-40866857 Msa0547560:intron 35.0%
TATTGTACCCTACAGAATGT+GGG + chr4_1:40866839-40866858 Msa0547560:intron 35.0%
AAAGTTTCCATTGGATCCTA+TGG + chr4_1:40867176-40867195 Msa0547560:intron 35.0%
TCATAGCTACGAGACAATTA+TGG + chr4_1:40867257-40867276 Msa0547560:intron 35.0%
!!! AGTAGTCATTTTTGCACGTT+TGG - chr4_1:40867539-40867558 None:intergenic 35.0%
CAGTATCCTGTTTATGGAAA+TGG + chr4_1:40867949-40867968 Msa0547560:CDS 35.0%
CTTCGCCATATTGAAGATAT+GGG - chr4_1:40868023-40868042 None:intergenic 35.0%
AATATTGAAACACCTGAGGT+GGG - chr4_1:40868104-40868123 None:intergenic 35.0%
TATTCTCCAATTGCTTCAAC+TGG + chr4_1:40868120-40868139 Msa0547560:CDS 35.0%
TGTAGTCAAATCTCGATAGT+TGG + chr4_1:40868343-40868362 Msa0547560:intron 35.0%
GACTTCAAGAAGCAATAACT+TGG - chr4_1:40868716-40868735 None:intergenic 35.0%
AAAAGCCCATCATTGGAATT+TGG + chr4_1:40868823-40868842 Msa0547560:three_prime_UTR 35.0%
AAAGCCCATCATTGGAATTT+GGG + chr4_1:40868824-40868843 Msa0547560:three_prime_UTR 35.0%
AAAGCCCAAATTCCAATGAT+GGG - chr4_1:40868831-40868850 None:intergenic 35.0%
AAAAGCCCAAATTCCAATGA+TGG - chr4_1:40868832-40868851 None:intergenic 35.0%
TACATAGAGAGGAAACCTTT+GGG - chr4_1:40868888-40868907 None:intergenic 35.0%
TTACATAGAGAGGAAACCTT+TGG - chr4_1:40868889-40868908 None:intergenic 35.0%
GGTTTCCTCTCTATGTAATT+TGG + chr4_1:40868891-40868910 Msa0547560:three_prime_UTR 35.0%
ACTCTCCAAATTACATAGAG+AGG - chr4_1:40868899-40868918 None:intergenic 35.0%
TGAACAAAAAAAATGGGGAG+GGG - chr4_1:40868941-40868960 None:intergenic 35.0%
CTTGAACAAAAAAAATGGGG+AGG - chr4_1:40868943-40868962 None:intergenic 35.0%
!! CATCTTTTTGGTACCTTTCA+AGG - chr4_1:40868986-40869005 None:intergenic 35.0%
GCTATAGGAAATAGCTAAGT+TGG + chr4_1:40869023-40869042 Msa0547560:three_prime_UTR 35.0%
!! TTTTTACCTAGCCTTTCCAA+GGG - chr4_1:40869071-40869090 None:intergenic 35.0%
!!! TTTTTTACCTAGCCTTTCCA+AGG - chr4_1:40869072-40869091 None:intergenic 35.0%
ACTTTCACTTTACCCTTCAT+GGG - chr4_1:40869118-40869137 None:intergenic 35.0%
TACTTTCACTTTACCCTTCA+TGG - chr4_1:40869119-40869138 None:intergenic 35.0%
CAATTAGTCATCTTCCCTTT+GGG + chr4_1:40869403-40869422 Msa0547560:three_prime_UTR 35.0%
TTGAGAACTACGTACATCAA+TGG + chr4_1:40869579-40869598 Msa0547560:three_prime_UTR 35.0%
GTAAACCTAGGGAGATATTT+GGG + chr4_1:40869634-40869653 Msa0547560:three_prime_UTR 35.0%
GAGAGAGATTAAATAAAGGG+AGG - chr4_1:40869778-40869797 None:intergenic 35.0%
GGGATATAACAAAGCTAACA+TGG - chr4_1:40870021-40870040 None:intergenic 35.0%
AGAGAGAGAGAGAGAGAATT+GGG - chr4_1:40861773-40861792 None:intergenic 40.0%
!!! TTTTTGTTGGAGGATTGGCT+TGG + chr4_1:40862117-40862136 Msa0547560:CDS 40.0%
!!! TTTTGTTGGAGGATTGGCTT+GGG + chr4_1:40862118-40862137 Msa0547560:CDS 40.0%
! TGAGCAATTTGGTGAGATCT+TGG + chr4_1:40862172-40862191 Msa0547560:CDS 40.0%
GCATACAAATCCATAGCCTT+TGG - chr4_1:40862234-40862253 None:intergenic 40.0%
GATGCTGCTCCTATAATTGA+TGG + chr4_1:40862697-40862716 Msa0547560:CDS 40.0%
AACTGCAACCTTGCTTCTTT+GGG + chr4_1:40862730-40862749 Msa0547560:CDS 40.0%
GTGTTGAAGGCTTAGATCTT+TGG - chr4_1:40862759-40862778 None:intergenic 40.0%
AAGCCTTCAACACCAAAACA+TGG + chr4_1:40862766-40862785 Msa0547560:CDS 40.0%
GCTTGAATATTCTTCCAGAG+TGG + chr4_1:40863269-40863288 Msa0547560:intron 40.0%
CATAGCATAACTTTCCACTC+TGG - chr4_1:40863286-40863305 None:intergenic 40.0%
AAGACCCGTAATAATGCATG+TGG - chr4_1:40863776-40863795 None:intergenic 40.0%
!!! TGCTCTTGTTTTTTTGTGGG+AGG + chr4_1:40863855-40863874 Msa0547560:intron 40.0%
!!! GCTCTTGTTTTTTTGTGGGA+GGG + chr4_1:40863856-40863875 Msa0547560:intron 40.0%
TGAAAATTTGTAGGAGGAGG+AGG + chr4_1:40864102-40864121 Msa0547560:intron 40.0%
GAAAATTTGTAGGAGGAGGA+GGG + chr4_1:40864103-40864122 Msa0547560:intron 40.0%
! CATTATAAGGTATCCCTTGC+TGG - chr4_1:40864221-40864240 None:intergenic 40.0%
CAAATAGACCTGATTCCACA+TGG + chr4_1:40864490-40864509 Msa0547560:intron 40.0%
GTTTGATATAACGGCACGTA+TGG - chr4_1:40865243-40865262 None:intergenic 40.0%
TACCGTAGGGTAACTGTAAT+CGG - chr4_1:40865372-40865391 None:intergenic 40.0%
!! ATTAATTTGTGTGGTAGGGC+TGG + chr4_1:40865847-40865866 Msa0547560:intron 40.0%
!! AAGGGGTGGATTAATAAAGG+TGG - chr4_1:40866207-40866226 None:intergenic 40.0%
! GTCAAGCTTGCTTATGAATG+TGG + chr4_1:40866789-40866808 Msa0547560:intron 40.0%
ATTGTACCCTACAGAATGTG+GGG + chr4_1:40866840-40866859 Msa0547560:intron 40.0%
!! CACTATAGCAAGTAGTGGAT+TGG - chr4_1:40867095-40867114 None:intergenic 40.0%
!! CAATCCACTACTTGCTATAG+TGG + chr4_1:40867093-40867112 Msa0547560:intron 40.0%
TCTACAACCATAGGATCCAA+TGG - chr4_1:40867186-40867205 None:intergenic 40.0%
!!! GACTTTTTTTTTGTGGTGGC+CGG + chr4_1:40867447-40867466 Msa0547560:intron 40.0%
!!! ACTTTTTTTTTGTGGTGGCC+GGG + chr4_1:40867448-40867467 Msa0547560:intron 40.0%
TGCATAAGATATGCAAGGTC+CGG - chr4_1:40867483-40867502 None:intergenic 40.0%
TGGAAAATGCAGAGCTACTA+TGG + chr4_1:40867904-40867923 Msa0547560:intron 40.0%
CAGAGCTACTATGGTATGTA+CGG + chr4_1:40867913-40867932 Msa0547560:intron 40.0%
ACAGCACAGTATCCTGTTTA+TGG + chr4_1:40867943-40867962 Msa0547560:CDS 40.0%
CCTTCGCCATATTGAAGATA+TGG - chr4_1:40868024-40868043 None:intergenic 40.0%
CCATATCTTCAATATGGCGA+AGG + chr4_1:40868021-40868040 Msa0547560:CDS 40.0%
GGTAGTTAACACCATAACCT+TGG - chr4_1:40868083-40868102 None:intergenic 40.0%
GAATATTGAAACACCTGAGG+TGG - chr4_1:40868105-40868124 None:intergenic 40.0%
GGAGAATATTGAAACACCTG+AGG - chr4_1:40868108-40868127 None:intergenic 40.0%
AGTGAGAAGTAGAAACCTGA+TGG - chr4_1:40868204-40868223 None:intergenic 40.0%
TATTGACCAGACTACACTTG+CGG + chr4_1:40868284-40868303 Msa0547560:intron 40.0%
AAATCTCGATAGTTGGACTG+AGG + chr4_1:40868350-40868369 Msa0547560:intron 40.0%
TCGAGATTTGACATGATCGT+TGG + chr4_1:40868392-40868411 Msa0547560:intron 40.0%
TTGACATGATCGTTGGACTA+AGG + chr4_1:40868399-40868418 Msa0547560:intron 40.0%
AGTCTCTAACGATGAGGAAT+TGG - chr4_1:40868653-40868672 None:intergenic 40.0%
GATATGAGTCTCTAACGATG+AGG - chr4_1:40868659-40868678 None:intergenic 40.0%
ATCAACCTTTGGTCTAACCA+TGG + chr4_1:40868749-40868768 Msa0547560:three_prime_UTR 40.0%
AAACACCATGGTTAGACCAA+AGG - chr4_1:40868757-40868776 None:intergenic 40.0%
GAACAAAAAAAATGGGGAGG+GGG - chr4_1:40868940-40868959 None:intergenic 40.0%
!! AGTTGCATTGGTTCCTTGAA+AGG + chr4_1:40868970-40868989 Msa0547560:three_prime_UTR 40.0%
AATTGCTAATCACACCTCTC+TGG + chr4_1:40869229-40869248 Msa0547560:three_prime_UTR 40.0%
AGAGGAAAGTTTAGCAATCG+TGG + chr4_1:40869256-40869275 Msa0547560:three_prime_UTR 40.0%
AGTTTAGCAATCGTGGACAT+TGG + chr4_1:40869263-40869282 Msa0547560:three_prime_UTR 40.0%
!!! GATGTCCCACCTTTTTTGTA+TGG + chr4_1:40869285-40869304 Msa0547560:three_prime_UTR 40.0%
CCAAAGGGAAGATGACTAAT+TGG - chr4_1:40869405-40869424 None:intergenic 40.0%
CCAATTAGTCATCTTCCCTT+TGG + chr4_1:40869402-40869421 Msa0547560:three_prime_UTR 40.0%
! TTTTTCTCCCCTTACCCAAA+GGG - chr4_1:40869420-40869439 None:intergenic 40.0%
!!! TTTTTTCTCCCCTTACCCAA+AGG - chr4_1:40869421-40869440 None:intergenic 40.0%
ACGTACATCAATGGAATGTG+TGG + chr4_1:40869588-40869607 Msa0547560:three_prime_UTR 40.0%
AAACACTTGCACGTAAACCT+AGG + chr4_1:40869622-40869641 Msa0547560:three_prime_UTR 40.0%
AACACTTGCACGTAAACCTA+GGG + chr4_1:40869623-40869642 Msa0547560:three_prime_UTR 40.0%
CGTAAACCTAGGGAGATATT+TGG + chr4_1:40869633-40869652 Msa0547560:three_prime_UTR 40.0%
GAGCAAAGTGAAGTAACCAA+GGG - chr4_1:40869662-40869681 None:intergenic 40.0%
TGAGCAAAGTGAAGTAACCA+AGG - chr4_1:40869663-40869682 None:intergenic 40.0%
ATTCACCTATGTCCTAACCA+TGG - chr4_1:40869690-40869709 None:intergenic 40.0%
AAAGGGAGGAGATTGTGAAA+TGG - chr4_1:40869764-40869783 None:intergenic 40.0%
AGGATCAATTCATTCTCTGC+TGG + chr4_1:40869900-40869919 Msa0547560:three_prime_UTR 40.0%
AATAATGCAAACTGGTGGGG+TGG + chr4_1:40861655-40861674 Msa0547560:five_prime_UTR 45.0%
ATAATGCAAACTGGTGGGGT+GGG + chr4_1:40861656-40861675 Msa0547560:five_prime_UTR 45.0%
AGAGAGAGAGAGAATTGGGA+GGG - chr4_1:40861769-40861788 None:intergenic 45.0%
GAGAGAGAGAGAGAGAGAAT+TGG - chr4_1:40861774-40861793 None:intergenic 45.0%
!!! GGTGTGTTTTTGGAGATGAG+TGG - chr4_1:40861850-40861869 None:intergenic 45.0%
!! GGTTGTGGTTGGTGTGTTTT+TGG - chr4_1:40861860-40861879 None:intergenic 45.0%
CTTCTTCTCAAGGTTGTGGT+TGG - chr4_1:40861871-40861890 None:intergenic 45.0%
GGATCTTCTTCTCAAGGTTG+TGG - chr4_1:40861875-40861894 None:intergenic 45.0%
!! ATAGATCTAGGTGATGGGGT+TGG - chr4_1:40861929-40861948 None:intergenic 45.0%
TCATAGCTAGCTAACCCTAG+AGG + chr4_1:40861996-40862015 Msa0547560:five_prime_UTR 45.0%
GTTATCACTGACAAAGCCAC+TGG + chr4_1:40862203-40862222 Msa0547560:CDS 45.0%
AAAGCCACTGGAAGATCCAA+AGG + chr4_1:40862215-40862234 Msa0547560:CDS 45.0%
ATAGCCTTTGGATCTTCCAG+TGG - chr4_1:40862222-40862241 None:intergenic 45.0%
ACTGGAAGATCCAAAGGCTA+TGG + chr4_1:40862221-40862240 Msa0547560:CDS 45.0%
CAAAGAAGCAAGGTTGCAGT+TGG - chr4_1:40862731-40862750 None:intergenic 45.0%
CAACTGCAACCTTGCTTCTT+TGG + chr4_1:40862729-40862748 Msa0547560:CDS 45.0%
TTTGGACACCCAAAGAAGCA+AGG - chr4_1:40862741-40862760 None:intergenic 45.0%
AAGCAAGACACACAGCTAAG+TGG + chr4_1:40863239-40863258 Msa0547560:intron 45.0%
AGGGAGGAACATTAGGGTAA+TGG + chr4_1:40864122-40864141 Msa0547560:CDS 45.0%
GGGAGGAACATTAGGGTAAT+GGG + chr4_1:40864123-40864142 Msa0547560:CDS 45.0%
!! GTAATGGGTTCTTTCCAGAC+AGG + chr4_1:40864138-40864157 Msa0547560:CDS 45.0%
GGTTCTTTCCAGACAGGATT+TGG + chr4_1:40864144-40864163 Msa0547560:CDS 45.0%
TCTTTCCAGACAGGATTTGG+AGG + chr4_1:40864147-40864166 Msa0547560:CDS 45.0%
CTTGCTGGATGGCATAATGA+GGG - chr4_1:40864206-40864225 None:intergenic 45.0%
CTCATTATGCCATCCAGCAA+GGG + chr4_1:40864205-40864224 Msa0547560:CDS 45.0%
! ATAAGGTATCCCTTGCTGGA+TGG - chr4_1:40864217-40864236 None:intergenic 45.0%
! TTATGAGTTGGCATTGCACG+TGG - chr4_1:40864356-40864375 None:intergenic 45.0%
ACCGTAGGGTAACTGTAATC+GGG - chr4_1:40865371-40865390 None:intergenic 45.0%
TTTCACGTAGGTGCAAGTCT+AGG - chr4_1:40865750-40865769 None:intergenic 45.0%
!! GTTGAGTTGGGAGAGTTAAG+GGG - chr4_1:40866224-40866243 None:intergenic 45.0%
!! GGTTGAGTTGGGAGAGTTAA+GGG - chr4_1:40866225-40866244 None:intergenic 45.0%
!! TGGTTGAGTTGGGAGAGTTA+AGG - chr4_1:40866226-40866245 None:intergenic 45.0%
!! GCTGATTTGGTGGTTGAGTT+GGG - chr4_1:40866236-40866255 None:intergenic 45.0%
! AGGTGATGGCCCACAAATAT+AGG + chr4_1:40866737-40866756 Msa0547560:intron 45.0%
TTGTACCCTACAGAATGTGG+GGG + chr4_1:40866841-40866860 Msa0547560:intron 45.0%
AGGACCACTATAGCAAGTAG+TGG - chr4_1:40867100-40867119 None:intergenic 45.0%
!!! CTTTTTTTTTGTGGTGGCCG+GGG + chr4_1:40867449-40867468 Msa0547560:intron 45.0%
CATAAGATATGCAAGGTCCG+GGG - chr4_1:40867481-40867500 None:intergenic 45.0%
GCATAAGATATGCAAGGTCC+GGG - chr4_1:40867482-40867501 None:intergenic 45.0%
CCTCGTGAACTTAGCTCAAT+TGG - chr4_1:40867515-40867534 None:intergenic 45.0%
CCAATTGAGCTAAGTTCACG+AGG + chr4_1:40867512-40867531 Msa0547560:intron 45.0%
AGCTACTATGGTATGTACGG+TGG + chr4_1:40867916-40867935 Msa0547560:CDS 45.0%
GCTACTATGGTATGTACGGT+GGG + chr4_1:40867917-40867936 Msa0547560:CDS 45.0%
CTACTATGGTATGTACGGTG+GGG + chr4_1:40867918-40867937 Msa0547560:CDS 45.0%
GCTGGTCCATTTCCATAAAC+AGG - chr4_1:40867958-40867977 None:intergenic 45.0%
GTTTATGGAAATGGACCAGC+TGG + chr4_1:40867958-40867977 Msa0547560:CDS 45.0%
CTTCAATATGGCGAAGGAAC+CGG + chr4_1:40868027-40868046 Msa0547560:CDS 45.0%
TACACTTCTGGCCAAGGTTA+TGG + chr4_1:40868069-40868088 Msa0547560:CDS 45.0%
TCTCCAATTGCTTCAACTGG+TGG + chr4_1:40868123-40868142 Msa0547560:CDS 45.0%
CTCCAATTGCTTCAACTGGT+GGG + chr4_1:40868124-40868143 Msa0547560:CDS 45.0%
TACCCACCAGTTGAAGCAAT+TGG - chr4_1:40868129-40868148 None:intergenic 45.0%
! GGAGAAGGTGCAAGAGAAAT+GGG - chr4_1:40868171-40868190 None:intergenic 45.0%
! AGGAGAAGGTGCAAGAGAAA+TGG - chr4_1:40868172-40868191 None:intergenic 45.0%
GAAGTAGAAACCTGATGGCA+AGG - chr4_1:40868199-40868218 None:intergenic 45.0%
ATTTGTCCGCAAGTGTAGTC+TGG - chr4_1:40868293-40868312 None:intergenic 45.0%
TTGGCCTGATCGTTGAACTT+AGG + chr4_1:40868448-40868467 Msa0547560:intron 45.0%
TGCACCTAAGTTCAACGATC+AGG - chr4_1:40868455-40868474 None:intergenic 45.0%
GTGTGATGAGAGAAACACCA+TGG - chr4_1:40868769-40868788 None:intergenic 45.0%
! GGGCCTATGATAATGATGAG+TGG - chr4_1:40868855-40868874 None:intergenic 45.0%
ATTATCATAGGCCCCCCATA+GGG + chr4_1:40868861-40868880 Msa0547560:three_prime_UTR 45.0%
GAATGGGAAAACTTAGCCCT+TGG + chr4_1:40869052-40869071 Msa0547560:three_prime_UTR 45.0%
GGAAAACTTAGCCCTTGGAA+AGG + chr4_1:40869057-40869076 Msa0547560:three_prime_UTR 45.0%
ACTTTCCTCTTCATCCAGAG+AGG - chr4_1:40869246-40869265 None:intergenic 45.0%
AGTCATCTTCCCTTTGGGTA+AGG + chr4_1:40869408-40869427 Msa0547560:three_prime_UTR 45.0%
GTCATCTTCCCTTTGGGTAA+GGG + chr4_1:40869409-40869428 Msa0547560:three_prime_UTR 45.0%
TCATCTTCCCTTTGGGTAAG+GGG + chr4_1:40869410-40869429 Msa0547560:three_prime_UTR 45.0%
TTCACTTTGCTCACCAACCA+TGG + chr4_1:40869670-40869689 Msa0547560:three_prime_UTR 45.0%
TTTGCTCACCAACCATGGTT+AGG + chr4_1:40869675-40869694 Msa0547560:three_prime_UTR 45.0%
ACCAACCATGGTTAGGACAT+AGG + chr4_1:40869682-40869701 Msa0547560:three_prime_UTR 45.0%
ACCTATGTCCTAACCATGGT+TGG - chr4_1:40869686-40869705 None:intergenic 45.0%
CATTCTCTGCTGGATGAGAA+TGG + chr4_1:40869910-40869929 Msa0547560:three_prime_UTR 45.0%
!! AAAATATAAAAAAAACAAAA+TGG - chr4_1:40862578-40862597 None:intergenic 5.0%
!!! TTTTGTTTTTTTTATATTTT+TGG + chr4_1:40862578-40862597 Msa0547560:intron 5.0%
!! ATTATAGATAAAATATAAAA+GGG - chr4_1:40863966-40863985 None:intergenic 5.0%
!! TATTATAGATAAAATATAAA+AGG - chr4_1:40863967-40863986 None:intergenic 5.0%
!! AGAAAAAATAATAATAATAA+TGG + chr4_1:40864572-40864591 Msa0547560:intron 5.0%
!!! TTTTTTTAATAATTTGTTAT+AGG - chr4_1:40865537-40865556 None:intergenic 5.0%
!!! TATTTTATATTTTAAAAATG+AGG + chr4_1:40866535-40866554 Msa0547560:intron 5.0%
!!! TATTTATTTTTATTCAAAAT+AGG - chr4_1:40866623-40866642 None:intergenic 5.0%
!!! AAATTAATTTTCATAAAAAA+GGG + chr4_1:40869366-40869385 Msa0547560:three_prime_UTR 5.0%
TAATGCAAACTGGTGGGGTG+GGG + chr4_1:40861657-40861676 Msa0547560:five_prime_UTR 50.0%
GAGAGAGAGAGAGAATTGGG+AGG - chr4_1:40861770-40861789 None:intergenic 50.0%
CAAGCTCTCATAGCAGCATC+AGG - chr4_1:40862673-40862692 None:intergenic 50.0%
TGCTGCTATGAGAGCTTGTG+TGG + chr4_1:40862675-40862694 Msa0547560:CDS 50.0%
AATTTGTAGGAGGAGGAGGG+AGG + chr4_1:40864106-40864125 Msa0547560:intron 50.0%
AGGAGGAGGGAGGAACATTA+GGG + chr4_1:40864116-40864135 Msa0547560:CDS 50.0%
CAGACAGGATTTGGAGGAGT+GGG + chr4_1:40864153-40864172 Msa0547560:CDS 50.0%
CTGGATGGCATAATGAGGGA+AGG - chr4_1:40864202-40864221 None:intergenic 50.0%
CCTTGCTGGATGGCATAATG+AGG - chr4_1:40864207-40864226 None:intergenic 50.0%
CCTCATTATGCCATCCAGCA+AGG + chr4_1:40864204-40864223 Msa0547560:CDS 50.0%
AGTTACATCAAGGGGCCATG+TGG - chr4_1:40864508-40864527 None:intergenic 50.0%
CGTAGGGTAACTGTAATCGG+GGG - chr4_1:40865369-40865388 None:intergenic 50.0%
CCGTAGGGTAACTGTAATCG+GGG - chr4_1:40865370-40865389 None:intergenic 50.0%
CCCCGATTACAGTTACCCTA+CGG + chr4_1:40865367-40865386 Msa0547560:CDS 50.0%
!! GGCTGATTTGGTGGTTGAGT+TGG - chr4_1:40866237-40866256 None:intergenic 50.0%
GTTCACCCCCACATTCTGTA+GGG - chr4_1:40866849-40866868 None:intergenic 50.0%
TATGGAAATGGACCAGCTGG+AGG + chr4_1:40867961-40867980 Msa0547560:CDS 50.0%
ATGGAAATGGACCAGCTGGA+GGG + chr4_1:40867962-40867981 Msa0547560:CDS 50.0%
! TGGTGTTAACTACCCACCTC+AGG + chr4_1:40868089-40868108 Msa0547560:CDS 50.0%
!! AGTGTGTTTTGCTGTGCCAC+AGG + chr4_1:40868605-40868624 Msa0547560:intron 50.0%
CATTATCATAGGCCCCCCAT+AGG + chr4_1:40868860-40868879 Msa0547560:three_prime_UTR 50.0%
TTATCATAGGCCCCCCATAG+GGG + chr4_1:40868862-40868881 Msa0547560:three_prime_UTR 50.0%
ACTTAGCCCTTGGAAAGGCT+AGG + chr4_1:40869062-40869081 Msa0547560:three_prime_UTR 50.0%
TCACACCTCTCTGGATGAAG+AGG + chr4_1:40869238-40869257 Msa0547560:three_prime_UTR 50.0%
GGGAACCCAAATATCTCCCT+AGG - chr4_1:40869642-40869661 None:intergenic 50.0%
! GGGAGATATTTGGGTTCCCT+TGG + chr4_1:40869643-40869662 Msa0547560:three_prime_UTR 50.0%
AATGCAAACTGGTGGGGTGG+GGG + chr4_1:40861658-40861677 Msa0547560:five_prime_UTR 55.0%
GAGGAGGAGGGAGGAACATT+AGG + chr4_1:40864115-40864134 Msa0547560:CDS 55.0%
CCACTCCTCCAAATCCTGTC+TGG - chr4_1:40864155-40864174 None:intergenic 55.0%
CCAGACAGGATTTGGAGGAG+TGG + chr4_1:40864152-40864171 Msa0547560:CDS 55.0%
TGAGGGAAGGTTGCAGCTGA+AGG - chr4_1:40864189-40864208 None:intergenic 55.0%
GCAAGGCATGCTTGCTTGCT+TGG - chr4_1:40864433-40864452 None:intergenic 55.0%
TCAAGGGGCCATGTGGAATC+AGG - chr4_1:40864501-40864520 None:intergenic 55.0%
GAGTTGGGAGAGTTAAGGGG+TGG - chr4_1:40866221-40866240 None:intergenic 55.0%
CGTTCACCCCCACATTCTGT+AGG - chr4_1:40866850-40866869 None:intergenic 55.0%
ACAGAATGTGGGGGTGAACG+TGG + chr4_1:40866850-40866869 Msa0547560:intron 55.0%
TGGGGGTGAACGTGGTAAGT+CGG + chr4_1:40866858-40866877 Msa0547560:intron 55.0%
CAATATGGCGAAGGAACCGG+CGG + chr4_1:40868030-40868049 Msa0547560:CDS 55.0%
GGTGGGTATGCTCAGCACTA+TGG + chr4_1:40868141-40868160 Msa0547560:CDS 55.0%
AAACCTGATGGCAAGGCAGC+AGG - chr4_1:40868192-40868211 None:intergenic 55.0%
TAGAGCCATTGTCACGCCTG+TGG - chr4_1:40868624-40868643 None:intergenic 55.0%
AAACCTTTGGGCCCCTATGG+GGG - chr4_1:40868876-40868895 None:intergenic 55.0%
GAAACCTTTGGGCCCCTATG+GGG - chr4_1:40868877-40868896 None:intergenic 55.0%
GGAAACCTTTGGGCCCCTAT+GGG - chr4_1:40868878-40868897 None:intergenic 55.0%
AGGAAACCTTTGGGCCCCTA+TGG - chr4_1:40868879-40868898 None:intergenic 55.0%
AAGGTCCGGGGTTCAAACCC+CGG - chr4_1:40867469-40867488 None:intergenic 60.0%
CCAGTCATCATCCCTCCAGC+TGG - chr4_1:40867976-40867995 None:intergenic 60.0%
CCAGCTGGAGGGATGATGAC+TGG + chr4_1:40867973-40867992 Msa0547560:CDS 60.0%
GCTGGAGGGATGATGACTGG+TGG + chr4_1:40867976-40867995 Msa0547560:CDS 60.0%
ACTACCGGCGGCTACACTTC+TGG + chr4_1:40868057-40868076 Msa0547560:CDS 60.0%
! TTGGCCAGAAGTGTAGCCGC+CGG - chr4_1:40868064-40868083 None:intergenic 60.0%
GATGGCAAGGCAGCAGGAGA+AGG - chr4_1:40868186-40868205 None:intergenic 60.0%
TCTCCTGCTGCCTTGCCATC+AGG + chr4_1:40868186-40868205 Msa0547560:CDS 60.0%
CTGTGCCACAGGCGTGACAA+TGG + chr4_1:40868616-40868635 Msa0547560:intron 60.0%
AACCTTTGGGCCCCTATGGG+GGG - chr4_1:40868875-40868894 None:intergenic 60.0%
GGCGGCTACACTTCTGGCCA+AGG + chr4_1:40868063-40868082 Msa0547560:CDS 65.0%
GGTGGCCGGGGTTTGAACCC+CGG + chr4_1:40867461-40867480 Msa0547560:intron 70.0%
GGAACCGGCGGCGCAACTAC+CGG + chr4_1:40868042-40868061 Msa0547560:CDS 70.0%
ACCGGCGGCGCAACTACCGG+CGG + chr4_1:40868045-40868064 Msa0547560:CDS 75.0%
GGCCCCCCATAGGGGCCCAA+AGG + chr4_1:40868870-40868889 Msa0547560:three_prime_UTR 75.0%
! GCCGCCGGTAGTTGCGCCGC+CGG - chr4_1:40868049-40868068 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 40861611 40870061 40861611 ID=Msa0547560;Name=Msa0547560
chr4_1 mRNA 40861611 40870061 40861611 ID=Msa0547560-mRNA-1;Parent=Msa0547560;Name=Msa0547560-mRNA-1;_AED=0.02;_eAED=0.02;_QI=434|1|1|1|0.83|0.71|7|1394|272
chr4_1 exon 40861611 40861796 40861611 ID=Msa0547560-mRNA-1:exon:10424;Parent=Msa0547560-mRNA-1
chr4_1 exon 40861817 40862247 40861817 ID=Msa0547560-mRNA-1:exon:10425;Parent=Msa0547560-mRNA-1
chr4_1 exon 40862655 40862787 40862655 ID=Msa0547560-mRNA-1:exon:10426;Parent=Msa0547560-mRNA-1
chr4_1 exon 40864115 40864247 40864115 ID=Msa0547560-mRNA-1:exon:10427;Parent=Msa0547560-mRNA-1
chr4_1 exon 40865352 40865388 40865352 ID=Msa0547560-mRNA-1:exon:10428;Parent=Msa0547560-mRNA-1
chr4_1 exon 40867916 40868207 40867916 ID=Msa0547560-mRNA-1:exon:10429;Parent=Msa0547560-mRNA-1
chr4_1 exon 40868627 40870061 40868627 ID=Msa0547560-mRNA-1:exon:10430;Parent=Msa0547560-mRNA-1
chr4_1 five_prime_UTR 40861611 40861796 40861611 ID=Msa0547560-mRNA-1:five_prime_utr;Parent=Msa0547560-mRNA-1
chr4_1 five_prime_UTR 40861817 40862064 40861817 ID=Msa0547560-mRNA-1:five_prime_utr;Parent=Msa0547560-mRNA-1
chr4_1 CDS 40862065 40862247 40862065 ID=Msa0547560-mRNA-1:cds;Parent=Msa0547560-mRNA-1
chr4_1 CDS 40862655 40862787 40862655 ID=Msa0547560-mRNA-1:cds;Parent=Msa0547560-mRNA-1
chr4_1 CDS 40864115 40864247 40864115 ID=Msa0547560-mRNA-1:cds;Parent=Msa0547560-mRNA-1
chr4_1 CDS 40865352 40865388 40865352 ID=Msa0547560-mRNA-1:cds;Parent=Msa0547560-mRNA-1
chr4_1 CDS 40867916 40868207 40867916 ID=Msa0547560-mRNA-1:cds;Parent=Msa0547560-mRNA-1
chr4_1 CDS 40868627 40868667 40868627 ID=Msa0547560-mRNA-1:cds;Parent=Msa0547560-mRNA-1
chr4_1 three_prime_UTR 40868668 40870061 40868668 ID=Msa0547560-mRNA-1:three_prime_utr;Parent=Msa0547560-mRNA-1
Gene Sequence

>Msa0547560

ATGACTCCAATTAATTTGGCAGGACAATTTGGTGACACAACATACACCAAAGTTTTTGTTGGAGGATTGGCTTGGGAAACTCAAAAAGAGACTATGAAGAAATATTTTGAGCAATTTGGTGAGATCTTGGAAGCTGTTGTTATCACTGACAAAGCCACTGGAAGATCCAAAGGCTATGGATTTGTCACTTTTCGTGAACCTGATGCTGCTATGAGAGCTTGTGTGGATGCTGCTCCTATAATTGATGGTAGAAGAGCCAACTGCAACCTTGCTTCTTTGGGTGTCCAAAGATCTAAGCCTTCAACACCAAAACATGGAGGAGGAGGGAGGAACATTAGGGTAATGGGTTCTTTCCAGACAGGATTTGGAGGAGTGGGATCAGCTTTTCCTTCAGCTGCAACCTTCCCTCATTATGCCATCCAGCAAGGGATACCTTATAATGTTTATGGGTACTCTTCATACTCCCCCGATTACAGTTACCCTACGAGCTACTATGGTATGTACGGTGGGGCAACAGCACAGTATCCTGTTTATGGAAATGGACCAGCTGGAGGGATGATGACTGGTGGTGCAGCAGCAGCAGCCTACTACCCATATCTTCAATATGGCGAAGGAACCGGCGGCGCAACTACCGGCGGCTACACTTCTGGCCAAGGTTATGGTGTTAACTACCCACCTCAGGTGTTTCAATATTCTCCAATTGCTTCAACTGGTGGGTATGCTCAGCACTATGGAACACCCATTTCTCTTGCACCTTCTCCTGCTGCCTTGCCATCAGGCGTGACAATGGCTCTACAAGCTCCAATTCCTCATCGTTAG
Protein sequence

>Msa0547560

MTPINLAGQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPIIDGRRANCNLASLGVQRSKPSTPKHGGGGRNIRVMGSFQTGFGGVGSAFPSAATFPHYAIQQGIPYNVYGYSSYSPDYSYPTSYYGMYGGATAQYPVYGNGPAGGMMTGGAAAAAYYPYLQYGEGTGGATTGGYTSGQGYGVNYPPQVFQYSPIASTGGYAQHYGTPISLAPSPAALPSGVTMALQAPIPHR*