AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0928060


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0928060 MtrunA17_Chr6g0484641 91.429 175 11 2 1 175 1 171 1.41e-104 297
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0928060 AT1G73885.1 58.824 85 33 2 92 174 95 179 2.00e-26 99.8

Find 73 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAATTTAGAGTTGATATT+TGG 0.189417 6_2:-72817318 Msa0928060:three_prime_UTR
TGCACCTAGATTGTAGTTTA+TGG 0.193554 6_2:+72817686 None:intergenic
TTGGATTCAAATGTTGAATA+TGG 0.194234 6_2:-72817299 Msa0928060:three_prime_UTR
TATACACTTTAGGCCTTGTT+TGG 0.272016 6_2:-72817138 Msa0928060:three_prime_UTR
AGGAGGGTGTAGGGTGTTGT+TGG 0.287013 6_2:+72819876 None:intergenic
GGAGAATGGTTGTGGATTCT+TGG 0.288850 6_2:-72819612 Msa0928060:CDS
GGTATGTTTGCTTGTATCTA+TGG 0.292996 6_2:+72817532 None:intergenic
GGTATTTCAACCTCGTTTCT+TGG 0.323311 6_2:+72819738 None:intergenic
AAAGAGCCTGATTTCTTTGA+AGG 0.327839 6_2:-72819663 Msa0928060:CDS
GGAGGGTGTAGGGTGTTGTT+GGG 0.338885 6_2:+72819877 None:intergenic
GGTGTAGGGTGTTGTTGGGG+TGG 0.347713 6_2:+72819881 None:intergenic
CTTATTGCACTCAATTTGTA+AGG 0.365549 6_2:-72817467 Msa0928060:three_prime_UTR
CAACAGTGGTTGTTGGTTGT+TGG 0.374252 6_2:+72819775 None:intergenic
TCTACCGACATATACACTTT+AGG 0.377356 6_2:-72817148 Msa0928060:three_prime_UTR
TGATTCACTTAAGTTCTGTT+TGG 0.377489 6_2:-72817190 Msa0928060:three_prime_UTR
TGGAATACTGTTGGGTTTGT+TGG 0.381813 6_2:-72819633 Msa0928060:CDS
ATGTCCGATTCAGATGTTTC+AGG 0.388886 6_2:+72817603 None:intergenic
AATATGGATAGTGGTTTGTA+TGG 0.398965 6_2:-72817283 Msa0928060:three_prime_UTR
ATCATCATCACTTTCTCTAA+TGG 0.401728 6_2:-72819952 Msa0928060:exon
GAGGGTGTAGGGTGTTGTTG+GGG 0.402150 6_2:+72819878 None:intergenic
CAAATGTTGAATATGGATAG+TGG 0.416010 6_2:-72817292 Msa0928060:three_prime_UTR
TCCTCATCAACAGTGGTTGT+TGG 0.427475 6_2:+72819768 None:intergenic
ATATCAACTCTAAATTTCAA+TGG 0.429258 6_2:+72817322 None:intergenic
ACAGACAATAACTATGTTTG+AGG 0.430526 6_2:+72820017 None:intergenic
GAAGATGGTAGGAGGGTGTA+GGG 0.430849 6_2:+72819867 None:intergenic
AGGAAGTAATAACGTTTGTA+TGG 0.434209 6_2:+72819987 None:intergenic
ATACACTTTAGGCCTTGTTT+GGG 0.443269 6_2:-72817137 Msa0928060:three_prime_UTR
TGAGGACCTTCAAAGAAATC+AGG 0.443462 6_2:+72819657 None:intergenic
TGATTGCAGGTACTCGGTGG+TGG 0.443641 6_2:-72817717 Msa0928060:intron
AGAAGATGGTAGGAGGGTGT+AGG 0.446000 6_2:+72819866 None:intergenic
GGTTTGTTGGAGAATGGTTG+TGG 0.447045 6_2:-72819620 Msa0928060:CDS
TAAGGAAACTCCTGCATACA+AGG 0.456201 6_2:-72817655 Msa0928060:CDS
CTGTTGGGTTTGTTGGAGAA+TGG 0.461075 6_2:-72819626 Msa0928060:CDS
GAAAGTGATGATGATGTTGT+AGG 0.471955 6_2:+72819960 None:intergenic
GTCCTCAGTGGAATACTGTT+GGG 0.482795 6_2:-72819641 Msa0928060:CDS
AGAAGAAGAAGATGGTAGGA+GGG 0.484589 6_2:+72819860 None:intergenic
ACAACCTGAAACATCTGAAT+CGG 0.485907 6_2:-72817607 Msa0928060:CDS
TTGGGGTGGTCTTGTTGTAG+AGG 0.490468 6_2:+72819895 None:intergenic
TGTTTGCTTGTATCTATGGA+TGG 0.492165 6_2:+72817536 None:intergenic
GTAGCTACATGCGGTGGTGC+AGG 0.492658 6_2:-72819921 Msa0928060:CDS
AAGAAGAAGAAGATGGTAGG+AGG 0.496497 6_2:+72819859 None:intergenic
AGGAGCTACCTCTGTAGGAT+TGG 0.496936 6_2:+72817572 None:intergenic
GACTGAGATTCCTTGTATGC+AGG 0.497420 6_2:+72817645 None:intergenic
CTTCTTGAAGAAGAAGAAGA+TGG 0.497936 6_2:+72819852 None:intergenic
GCAGCCATAAACTACAATCT+AGG 0.509629 6_2:-72817690 Msa0928060:CDS
CCAGGAGGTCTCCATTCAAA+AGG 0.515241 6_2:+72819693 None:intergenic
AGATTTCTTCACGTTCAAGA+AGG 0.538426 6_2:-72819800 Msa0928060:CDS
GGTCCTCAGTGGAATACTGT+TGG 0.542352 6_2:-72819642 Msa0928060:CDS
CAATCTTCATCAGAGTAAAA+CGG 0.547523 6_2:+72819717 None:intergenic
AAATCTTCTTAGCTGAAACT+AGG 0.551449 6_2:+72819817 None:intergenic
TCATCGTGATTGCAGGTACT+CGG 0.560112 6_2:-72817723 Msa0928060:intron
TGCACCACCGCATGTAGCTA+CGG 0.561836 6_2:+72819923 None:intergenic
GAATGGTTGTGGATTCTTGG+TGG 0.562063 6_2:-72819609 Msa0928060:CDS
ACCAACAACCACTGTTGATG+AGG 0.567125 6_2:-72819769 Msa0928060:CDS
CTATTAAGTTCTCCCAAACA+AGG 0.569571 6_2:+72817125 None:intergenic
TTGAAGAAGAAGAAGATGGT+AGG 0.573751 6_2:+72819856 None:intergenic
GATTGCAGGTACTCGGTGGT+GGG 0.579381 6_2:-72817716 Msa0928060:intron
TGGATGGACTAGTTCAAACT+AGG 0.580396 6_2:+72817552 None:intergenic
TCAGGCTCTTTGTAAGTACC+AGG 0.580767 6_2:+72819675 None:intergenic
TTCTACTTCCTCATCAACAG+TGG 0.592861 6_2:+72819761 None:intergenic
CTGAGGCAAAATTGTCGTGT+TGG 0.595005 6_2:-72817403 Msa0928060:three_prime_UTR
ATTTCTTTGAAGGTCCTCAG+TGG 0.623902 6_2:-72819653 Msa0928060:CDS
GATTCATATATGCTAAAACA+AGG 0.637122 6_2:+72817511 None:intergenic
ATGATGATGTTGTAGGAACA+AGG 0.639639 6_2:+72819967 None:intergenic
AAGGCCTAAAGTGTATATGT+CGG 0.651724 6_2:+72817144 None:intergenic
ACTTAAGTGTATCAATTCTG+AGG 0.669053 6_2:-72817420 Msa0928060:three_prime_UTR
GCATTCACCGTAGCTACATG+CGG 0.676586 6_2:-72819930 Msa0928060:CDS
TCGTGATTGCAGGTACTCGG+TGG 0.679621 6_2:-72817720 Msa0928060:intron
TTCACCGTAGCTACATGCGG+TGG 0.691064 6_2:-72819927 Msa0928060:CDS
GGCTCTTTGTAAGTACCAGG+AGG 0.691981 6_2:+72819678 None:intergenic
ATTCGAGTCCAATCCTACAG+AGG 0.715767 6_2:-72817580 Msa0928060:CDS
GGAAGTAGAACCAAGAAACG+AGG 0.736887 6_2:-72819748 Msa0928060:CDS
AACCCAACAGTATTCCACTG+AGG 0.795226 6_2:+72819639 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAGTATAAGAAGAAATT+TGG - chr6_2:72818242-72818261 Msa0928060:intron 15.0%
!!! TTTTAGTATAAGAAGAAATT+TGG - chr6_2:72818242-72818261 Msa0928060:intron 15.0%
!!! TATTTTTATGAACTTGTTTT+AGG + chr6_2:72818870-72818889 None:intergenic 15.0%
!! ATTGAAAAAAATATACAACA+CGG + chr6_2:72819789-72819808 None:intergenic 15.0%
!!! TTTAGCTTCTTACAAAAAAA+AGG - chr6_2:72817966-72817985 Msa0928060:intron 20.0%
!!! ACTTAGTTCATATTTTGAAT+TGG + chr6_2:72818451-72818470 None:intergenic 20.0%
!! ACATTTAAACAACATAGTTA+TGG + chr6_2:72818937-72818956 None:intergenic 20.0%
!!! ACTATGTTGTTTAAATGTTA+AGG - chr6_2:72818939-72818958 Msa0928060:intron 20.0%
!! ATAATATTGCAAAACAATTG+TGG + chr6_2:72819013-72819032 None:intergenic 20.0%
!!! TAATTTTATCTTCGAAAACT+TGG + chr6_2:72819105-72819124 None:intergenic 20.0%
!!! TAATCTATTTAGGAAGTTTT+TGG + chr6_2:72819264-72819283 None:intergenic 20.0%
!! AAAAACTTCCTAAATAGATT+AGG - chr6_2:72819263-72819282 Msa0928060:intron 20.0%
!! TTGAAAAAAATATACAACAC+GGG + chr6_2:72819788-72819807 None:intergenic 20.0%
!! ATATCAACTCTAAATTTCAA+TGG + chr6_2:72819844-72819863 None:intergenic 20.0%
!!! TGAAATTTAGAGTTGATATT+TGG - chr6_2:72819845-72819864 Msa0928060:CDS 20.0%
!!! TACTATTTTGTTACAAATGT+TGG - chr6_2:72819937-72819956 Msa0928060:exon 20.0%
!! CTTGAGTATTAGAAGAATTT+TGG - chr6_2:72817684-72817703 Msa0928060:CDS 25.0%
! ATAAGTTGTTTATCCAAACA+GGG + chr6_2:72817722-72817741 None:intergenic 25.0%
! AATAAGTTGTTTATCCAAAC+AGG + chr6_2:72817723-72817742 None:intergenic 25.0%
! AGTTAAAATGTTTCGATACA+TGG - chr6_2:72817826-72817845 Msa0928060:intron 25.0%
!! TGTTTTCATAAGTATCTTGA+AGG - chr6_2:72817996-72818015 Msa0928060:intron 25.0%
!! GTTTTCATAAGTATCTTGAA+GGG - chr6_2:72817997-72818016 Msa0928060:intron 25.0%
!! GTATTTTGCGTGAATATTAA+TGG + chr6_2:72818114-72818133 None:intergenic 25.0%
! TACTACTAGGTTTCTATATT+AGG + chr6_2:72818197-72818216 None:intergenic 25.0%
!!! AGTTAACTTTTGAGTTTATC+TGG - chr6_2:72818275-72818294 Msa0928060:intron 25.0%
!!! TAGTTCATATTTTGAATTGG+CGG + chr6_2:72818448-72818467 None:intergenic 25.0%
! TCATAAGTAACTAGAACAAT+TGG - chr6_2:72818511-72818530 Msa0928060:intron 25.0%
! CATAAGTAACTAGAACAATT+GGG - chr6_2:72818512-72818531 Msa0928060:intron 25.0%
! TAGTATAAGAAGAAATTTGG+AGG - chr6_2:72818245-72818264 Msa0928060:intron 25.0%
! CGAAGATAAAATTACTTATG+TGG - chr6_2:72819111-72819130 Msa0928060:intron 25.0%
! GATTCATATATGCTAAAACA+AGG + chr6_2:72819655-72819674 None:intergenic 25.0%
!!! GTTTGAAATTTTCATTCACT+TGG + chr6_2:72819677-72819696 None:intergenic 25.0%
! TTGGATTCAAATGTTGAATA+TGG - chr6_2:72819864-72819883 Msa0928060:CDS 25.0%
ACAGACAATAACTATGTTTG+AGG + chr6_2:72817149-72817168 None:intergenic 30.0%
AGGAAGTAATAACGTTTGTA+TGG + chr6_2:72817179-72817198 None:intergenic 30.0%
ATCATCATCACTTTCTCTAA+TGG - chr6_2:72817211-72817230 Msa0928060:three_prime_UTR 30.0%
AAATCTTCTTAGCTGAAACT+AGG + chr6_2:72817349-72817368 None:intergenic 30.0%
CAATCTTCATCAGAGTAAAA+CGG + chr6_2:72817449-72817468 None:intergenic 30.0%
! TTTGTTTGTTGCTGAATTGT+TGG - chr6_2:72817621-72817640 Msa0928060:CDS 30.0%
!!! TAAGTTGTTTTAACCCACTT+AGG - chr6_2:72817851-72817870 Msa0928060:intron 30.0%
TACTTGTGAGACTATTTGTA+CGG + chr6_2:72818057-72818076 None:intergenic 30.0%
GATCGTAATATTAGATCATG+TGG + chr6_2:72818600-72818619 None:intergenic 30.0%
TCTAATATTACGATCCATCT+TGG - chr6_2:72818605-72818624 Msa0928060:intron 30.0%
TCGCAAAATAGCAAAAGAAA+AGG + chr6_2:72818658-72818677 None:intergenic 30.0%
AGTTTCTGCTAATGAATTGT+AGG - chr6_2:72818691-72818710 Msa0928060:intron 30.0%
TATAAGAAGAAATTTGGAGG+AGG - chr6_2:72818774-72818793 Msa0928060:intron 30.0%
TGGTCAAATATAGTATCATG+CGG + chr6_2:72818993-72819012 None:intergenic 30.0%
GCAGAGCAATAAAATTTGAA+TGG + chr6_2:72819169-72819188 None:intergenic 30.0%
! GTTTGTTGAATTTAAGCACA+AGG - chr6_2:72819202-72819221 Msa0928060:intron 30.0%
CAAACATGCCTAATCTATTT+AGG + chr6_2:72819274-72819293 None:intergenic 30.0%
AATGTCTTGTCTAGAGAATT+TGG - chr6_2:72819364-72819383 Msa0928060:intron 30.0%
ATGTCTTGTCTAGAGAATTT+GGG - chr6_2:72819365-72819384 Msa0928060:intron 30.0%
CTTATTGCACTCAATTTGTA+AGG - chr6_2:72819696-72819715 Msa0928060:CDS 30.0%
ACTTAAGTGTATCAATTCTG+AGG - chr6_2:72819743-72819762 Msa0928060:CDS 30.0%
CAAATGTTGAATATGGATAG+TGG - chr6_2:72819871-72819890 Msa0928060:CDS 30.0%
! AATATGGATAGTGGTTTGTA+TGG - chr6_2:72819880-72819899 Msa0928060:CDS 30.0%
TGATTCACTTAAGTTCTGTT+TGG - chr6_2:72819973-72819992 Msa0928060:five_prime_UTR 30.0%
! ATGATGATGTTGTAGGAACA+AGG + chr6_2:72817199-72817218 None:intergenic 35.0%
! GAAAGTGATGATGATGTTGT+AGG + chr6_2:72817206-72817225 None:intergenic 35.0%
TTGAAGAAGAAGAAGATGGT+AGG + chr6_2:72817310-72817329 None:intergenic 35.0%
CTTCTTGAAGAAGAAGAAGA+TGG + chr6_2:72817314-72817333 None:intergenic 35.0%
AGATTTCTTCACGTTCAAGA+AGG - chr6_2:72817363-72817382 Msa0928060:three_prime_UTR 35.0%
! CGTTTTACTCTGATGAAGAT+TGG - chr6_2:72817447-72817466 Msa0928060:three_prime_UTR 35.0%
!!! ATGAAGATTGGCCTTTTGAA+TGG - chr6_2:72817459-72817478 Msa0928060:three_prime_UTR 35.0%
AAAGAGCCTGATTTCTTTGA+AGG - chr6_2:72817500-72817519 Msa0928060:three_prime_UTR 35.0%
GAAGAATATATGACCCTGTT+TGG - chr6_2:72817706-72817725 Msa0928060:CDS 35.0%
CAACTTATTGTGCAGCTTAT+AGG - chr6_2:72817734-72817753 Msa0928060:intron 35.0%
!!! TTGTTTTAACCCACTTAGGT+TGG - chr6_2:72817855-72817874 Msa0928060:intron 35.0%
CTTGAAGGGTTTGTGATATA+CGG - chr6_2:72818011-72818030 Msa0928060:intron 35.0%
TTGTACGGAGTTGCAAAAAA+AGG + chr6_2:72818042-72818061 None:intergenic 35.0%
TCCATTAAGCGTATCCATTA+CGG - chr6_2:72818080-72818099 Msa0928060:intron 35.0%
GCGTGAATATTAATGGTTGT+TGG + chr6_2:72818107-72818126 None:intergenic 35.0%
CAAAATGCACACATACTACT+AGG + chr6_2:72818210-72818229 None:intergenic 35.0%
CACTTATCTAGGAACATGTT+TGG - chr6_2:72818307-72818326 Msa0928060:intron 35.0%
TAGGAACATGTTTGGATTGA+CGG - chr6_2:72818315-72818334 Msa0928060:intron 35.0%
TTTGAACTTTGACGAAAGCA+CGG - chr6_2:72818342-72818361 Msa0928060:intron 35.0%
AGTAACTAGAACAATTGGGT+TGG - chr6_2:72818516-72818535 Msa0928060:intron 35.0%
TAGATCATGTGGCAACAATT+AGG + chr6_2:72818589-72818608 None:intergenic 35.0%
ACTGCAGCACATAGATAAAT+GGG + chr6_2:72818898-72818917 None:intergenic 35.0%
TACTGCAGCACATAGATAAA+TGG + chr6_2:72818899-72818918 None:intergenic 35.0%
ATCTATGTGCTGCAGTATTA+AGG - chr6_2:72818902-72818921 Msa0928060:intron 35.0%
CTAGTCATATATCGACATGT+AGG - chr6_2:72819396-72819415 Msa0928060:intron 35.0%
TATAAGTTCATCGTGATTGC+AGG - chr6_2:72819433-72819452 Msa0928060:intron 35.0%
TGCACCTAGATTGTAGTTTA+TGG + chr6_2:72819480-72819499 None:intergenic 35.0%
! TCTAGGTGCATCAGATTTTA+AGG - chr6_2:72819490-72819509 Msa0928060:intron 35.0%
ACAACCTGAAACATCTGAAT+CGG - chr6_2:72819556-72819575 Msa0928060:intron 35.0%
TGTTTGCTTGTATCTATGGA+TGG + chr6_2:72819630-72819649 None:intergenic 35.0%
GGTATGTTTGCTTGTATCTA+TGG + chr6_2:72819634-72819653 None:intergenic 35.0%
!!! GTGTTTTGATCTGCTTTGTT+TGG - chr6_2:72819912-72819931 Msa0928060:CDS 35.0%
TCTACCGACATATACACTTT+AGG - chr6_2:72820015-72820034 Msa0928060:five_prime_UTR 35.0%
AAGGCCTAAAGTGTATATGT+CGG + chr6_2:72820022-72820041 None:intergenic 35.0%
!! TATACACTTTAGGCCTTGTT+TGG - chr6_2:72820025-72820044 Msa0928060:five_prime_UTR 35.0%
!! ATACACTTTAGGCCTTGTTT+GGG - chr6_2:72820026-72820045 Msa0928060:five_prime_UTR 35.0%
AGAAGAAGAAGATGGTAGGA+GGG + chr6_2:72817306-72817325 None:intergenic 40.0%
AAGAAGAAGAAGATGGTAGG+AGG + chr6_2:72817307-72817326 None:intergenic 40.0%
TTCTACTTCCTCATCAACAG+TGG + chr6_2:72817405-72817424 None:intergenic 40.0%
GGTATTTCAACCTCGTTTCT+TGG + chr6_2:72817428-72817447 None:intergenic 40.0%
TGAGGACCTTCAAAGAAATC+AGG + chr6_2:72817509-72817528 None:intergenic 40.0%
! ATTTCTTTGAAGGTCCTCAG+TGG - chr6_2:72817510-72817529 Msa0928060:three_prime_UTR 40.0%
TGGAATACTGTTGGGTTTGT+TGG - chr6_2:72817530-72817549 Msa0928060:three_prime_UTR 40.0%
!! GATTCTTGGTGGTCTTTTTG+CGG - chr6_2:72817565-72817584 Msa0928060:CDS 40.0%
CCATTAAGCGTATCCATTAC+GGG - chr6_2:72818081-72818100 Msa0928060:intron 40.0%
GGCGACATAATCACTTATCT+AGG - chr6_2:72818296-72818315 Msa0928060:intron 40.0%
AGGAACATGTTTGGATTGAC+GGG - chr6_2:72818316-72818335 Msa0928060:intron 40.0%
TTTCTTGCCAAAATTGCGCT+GGG - chr6_2:72818400-72818419 Msa0928060:intron 40.0%
! GTTTAAAGCAGCGTTTCATC+AGG + chr6_2:72819040-72819059 None:intergenic 40.0%
TCTCTAGACAAGACATTCCT+TGG + chr6_2:72819361-72819380 None:intergenic 40.0%
GCAGCCATAAACTACAATCT+AGG - chr6_2:72819473-72819492 Msa0928060:intron 40.0%
TAAGGAAACTCCTGCATACA+AGG - chr6_2:72819508-72819527 Msa0928060:intron 40.0%
ATGTCCGATTCAGATGTTTC+AGG + chr6_2:72819563-72819582 None:intergenic 40.0%
!! TGGATGGACTAGTTCAAACT+AGG + chr6_2:72819614-72819633 None:intergenic 40.0%
! CAACAGTGGTTGTTGGTTGT+TGG + chr6_2:72817391-72817410 None:intergenic 45.0%
ACCAACAACCACTGTTGATG+AGG - chr6_2:72817394-72817413 Msa0928060:three_prime_UTR 45.0%
TCCTCATCAACAGTGGTTGT+TGG + chr6_2:72817398-72817417 None:intergenic 45.0%
GGAAGTAGAACCAAGAAACG+AGG - chr6_2:72817415-72817434 Msa0928060:three_prime_UTR 45.0%
TCAGGCTCTTTGTAAGTACC+AGG + chr6_2:72817491-72817510 None:intergenic 45.0%
GTCCTCAGTGGAATACTGTT+GGG - chr6_2:72817522-72817541 Msa0928060:three_prime_UTR 45.0%
AACCCAACAGTATTCCACTG+AGG + chr6_2:72817527-72817546 None:intergenic 45.0%
!! CTGTTGGGTTTGTTGGAGAA+TGG - chr6_2:72817537-72817556 Msa0928060:three_prime_UTR 45.0%
!! GGTTTGTTGGAGAATGGTTG+TGG - chr6_2:72817543-72817562 Msa0928060:exon 45.0%
GGAGAATGGTTGTGGATTCT+TGG - chr6_2:72817551-72817570 Msa0928060:exon 45.0%
GAATGGTTGTGGATTCTTGG+TGG - chr6_2:72817554-72817573 Msa0928060:exon 45.0%
GAATCGAACATGAGACCTTG+AGG + chr6_2:72817919-72817938 None:intergenic 45.0%
GTCTCATGTTCGATTCTCTC+CGG - chr6_2:72817923-72817942 Msa0928060:intron 45.0%
! TCTCCGGTGTCAATTTGAGT+GGG - chr6_2:72817939-72817958 Msa0928060:intron 45.0%
TAGCCCACTCAAATTGACAC+CGG + chr6_2:72817945-72817964 None:intergenic 45.0%
!! CCCGTAATGGATACGCTTAA+TGG + chr6_2:72818084-72818103 None:intergenic 45.0%
TAATGGTTGTTGGCCCGTAA+TGG + chr6_2:72818097-72818116 None:intergenic 45.0%
CTCTCACGCTCAACACTATT+GGG + chr6_2:72818136-72818155 None:intergenic 45.0%
! CAATAGTGTTGAGCGTGAGA+GGG - chr6_2:72818135-72818154 Msa0928060:intron 45.0%
GGAACATGTTTGGATTGACG+GGG - chr6_2:72818317-72818336 Msa0928060:intron 45.0%
GTTTCTTGCCAAAATTGCGC+TGG - chr6_2:72818399-72818418 Msa0928060:intron 45.0%
! CCATCTTGGTTGTGTTTTCG+CGG - chr6_2:72818619-72818638 Msa0928060:intron 45.0%
CGTTCGTTTCTTTGATGCCA+AGG - chr6_2:72819341-72819360 Msa0928060:intron 45.0%
TCATCGTGATTGCAGGTACT+CGG - chr6_2:72819440-72819459 Msa0928060:intron 45.0%
GACTGAGATTCCTTGTATGC+AGG + chr6_2:72819521-72819540 None:intergenic 45.0%
ATTCGAGTCCAATCCTACAG+AGG - chr6_2:72819583-72819602 Msa0928060:intron 45.0%
AAACTAGGAGCTACCTCTGT+AGG + chr6_2:72819599-72819618 None:intergenic 45.0%
CTGAGGCAAAATTGTCGTGT+TGG - chr6_2:72819760-72819779 Msa0928060:CDS 45.0%
GCATTCACCGTAGCTACATG+CGG - chr6_2:72817233-72817252 Msa0928060:three_prime_UTR 50.0%
!! TTGGGGTGGTCTTGTTGTAG+AGG + chr6_2:72817271-72817290 None:intergenic 50.0%
! GAAGATGGTAGGAGGGTGTA+GGG + chr6_2:72817299-72817318 None:intergenic 50.0%
! AGAAGATGGTAGGAGGGTGT+AGG + chr6_2:72817300-72817319 None:intergenic 50.0%
CCAGGAGGTCTCCATTCAAA+AGG + chr6_2:72817473-72817492 None:intergenic 50.0%
! CCTTTTGAATGGAGACCTCC+TGG - chr6_2:72817470-72817489 Msa0928060:three_prime_UTR 50.0%
GGCTCTTTGTAAGTACCAGG+AGG + chr6_2:72817488-72817507 None:intergenic 50.0%
GGTCCTCAGTGGAATACTGT+TGG - chr6_2:72817521-72817540 Msa0928060:three_prime_UTR 50.0%
!! TTAACCCACTTAGGTTGGCC+TGG - chr6_2:72817860-72817879 Msa0928060:intron 50.0%
!! TTGGCCTGGTGGTATTGACT+TGG - chr6_2:72817874-72817893 Msa0928060:intron 50.0%
!! TGGCCTGGTGGTATTGACTT+GGG - chr6_2:72817875-72817894 Msa0928060:intron 50.0%
!! GTGGTATTGACTTGGGACCT+GGG - chr6_2:72817882-72817901 Msa0928060:intron 50.0%
TCGAACATGAGACCTTGAGG+AGG + chr6_2:72817916-72817935 None:intergenic 50.0%
! CTCTCCGGTGTCAATTTGAG+TGG - chr6_2:72817938-72817957 Msa0928060:intron 50.0%
CCTCTCACGCTCAACACTAT+TGG + chr6_2:72818137-72818156 None:intergenic 50.0%
! CCAATAGTGTTGAGCGTGAG+AGG - chr6_2:72818134-72818153 Msa0928060:intron 50.0%
! TGAGAGGGTGTATGCGTGAA+GGG - chr6_2:72818150-72818169 Msa0928060:intron 50.0%
TATGCGTGAAGGGGCTTACT+GGG - chr6_2:72818160-72818179 Msa0928060:intron 50.0%
! CAGATGACCCAGCGCAATTT+TGG + chr6_2:72818410-72818429 None:intergenic 50.0%
AATTGGCGGTGAGTCTGACA+TGG + chr6_2:72818434-72818453 None:intergenic 50.0%
CCGCGAAAACACAACCAAGA+TGG + chr6_2:72818622-72818641 None:intergenic 50.0%
AGGAGCTACCTCTGTAGGAT+TGG + chr6_2:72819594-72819613 None:intergenic 50.0%
TTCACCGTAGCTACATGCGG+TGG - chr6_2:72817236-72817255 Msa0928060:three_prime_UTR 55.0%
TGCACCACCGCATGTAGCTA+CGG + chr6_2:72817243-72817262 None:intergenic 55.0%
!! GAGGGTGTAGGGTGTTGTTG+GGG + chr6_2:72817288-72817307 None:intergenic 55.0%
!! GGAGGGTGTAGGGTGTTGTT+GGG + chr6_2:72817289-72817308 None:intergenic 55.0%
!! AGGAGGGTGTAGGGTGTTGT+TGG + chr6_2:72817290-72817309 None:intergenic 55.0%
ACCACCAGGCCAACCTAAGT+GGG + chr6_2:72817867-72817886 None:intergenic 55.0%
TACCACCAGGCCAACCTAAG+TGG + chr6_2:72817868-72817887 None:intergenic 55.0%
GGTCCCAAGTCAATACCACC+AGG + chr6_2:72817881-72817900 None:intergenic 55.0%
!! GGTGGTATTGACTTGGGACC+TGG - chr6_2:72817881-72817900 Msa0928060:intron 55.0%
! GTGAGAGGGTGTATGCGTGA+AGG - chr6_2:72818149-72818168 Msa0928060:intron 55.0%
! GAGAGGGTGTATGCGTGAAG+GGG - chr6_2:72818151-72818170 Msa0928060:intron 55.0%
GTATGCGTGAAGGGGCTTAC+TGG - chr6_2:72818159-72818178 Msa0928060:intron 55.0%
ATGCGTGAAGGGGCTTACTG+GGG - chr6_2:72818161-72818180 Msa0928060:intron 55.0%
TCGTGATTGCAGGTACTCGG+TGG - chr6_2:72819443-72819462 Msa0928060:intron 55.0%
! TGATTGCAGGTACTCGGTGG+TGG - chr6_2:72819446-72819465 Msa0928060:intron 55.0%
! GATTGCAGGTACTCGGTGGT+GGG - chr6_2:72819447-72819466 Msa0928060:intron 55.0%
GTAGCTACATGCGGTGGTGC+AGG - chr6_2:72817242-72817261 Msa0928060:three_prime_UTR 60.0%
!! GGTGTAGGGTGTTGTTGGGG+TGG + chr6_2:72817285-72817304 None:intergenic 60.0%
!! ACCCACTTAGGTTGGCCTGG+TGG - chr6_2:72817863-72817882 Msa0928060:intron 60.0%
! TTGAGGAGGAGCACACTCCC+AGG + chr6_2:72817902-72817921 None:intergenic 60.0%
! TGGGAGTGTGCTCCTCCTCA+AGG - chr6_2:72817901-72817920 Msa0928060:intron 60.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 72817129 72820056 72817129 ID=Msa0928060;Name=Msa0928060
chr6_2 mRNA 72817129 72820056 72817129 ID=Msa0928060-mRNA-1;Parent=Msa0928060;Name=Msa0928060-mRNA-1;_AED=0.00;_eAED=0.00;_QI=101|1|1|1|1|1|2|431|175
chr6_2 exon 72817129 72817730 72817129 ID=Msa0928060-mRNA-1:exon:12366;Parent=Msa0928060-mRNA-1
chr6_2 exon 72819599 72820056 72819599 ID=Msa0928060-mRNA-1:exon:12365;Parent=Msa0928060-mRNA-1
chr6_2 five_prime_UTR 72819956 72820056 72819956 ID=Msa0928060-mRNA-1:five_prime_utr;Parent=Msa0928060-mRNA-1
chr6_2 CDS 72819599 72819955 72819599 ID=Msa0928060-mRNA-1:cds;Parent=Msa0928060-mRNA-1
chr6_2 CDS 72817560 72817730 72817560 ID=Msa0928060-mRNA-1:cds;Parent=Msa0928060-mRNA-1
chr6_2 three_prime_UTR 72817129 72817559 72817129 ID=Msa0928060-mRNA-1:three_prime_utr;Parent=Msa0928060-mRNA-1
Gene Sequence

>Msa0928060

ATGGCATTCACCGTAGCTACATGCGGTGGTGCAGGAATCCTCTACAACAAGACCACCCCAACAACACCCTACACCCTCCTACCATCTTCTTCTTCTTCAAGAAGAAGAACACTTCACCTAGTTTCAGCTAAGAAGATTTCTTCACGTTCAAGAAGGAACCAACAACCAACAACCACTGTTGATGAGGAAGTAGAACCAAGAAACGAGGTTGAAATACCGTTTTACTCTGATGAAGATTGGCCTTTTGAATGGAGACCTCCTGGTACTTACAAAGAGCCTGATTTCTTTGAAGGTCCTCAGTGGAATACTGTTGGGTTTGTTGGAGAATGGTTGTGGATTCTTGGTGGTCTTTTTGCGGTACTCGGTGGTGGGTATGCAGCCATAAACTACAATCTAGGTGCATCAGATTTTAAGGAAACTCCTGCATACAAGGAATCTCAGTCTCAAGAACTTTTAGAACAACCTGAAACATCTGAATCGGACATATTCGAGTCCAATCCTACAGAGGTAGCTCCTAGTTTGAACTAG

Protein sequence

>Msa0928060

MAFTVATCGGAGILYNKTTPTTPYTLLPSSSSSRRRTLHLVSAKKISSRSRRNQQPTTTVDEEVEPRNEVEIPFYSDEDWPFEWRPPGTYKEPDFFEGPQWNTVGFVGEWLWILGGLFAVLGGGYAAINYNLGASDFKETPAYKESQSQELLEQPETSESDIFESNPTEVAPSLN*