Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0569090 | XP_003630256.2 | 96.860 | 605 | 14 | 1 | 1 | 605 | 1 | 600 | 0.0 | 1201 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0569090 | sp|Q9SXY1|FAS2_ARATH | 69.634 | 382 | 114 | 2 | 1 | 380 | 1 | 382 | 0.0 | 582 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0569090 | G7LE10 | 96.860 | 605 | 14 | 1 | 1 | 605 | 1 | 600 | 0.0 | 1201 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0032980 | Msa0569090 | 0.810331 | 1.215589e-50 | -8.615850e-47 |
| Msa0067060 | Msa0569090 | 0.803493 | 3.396171e-49 | -8.615850e-47 |
| Msa0075530 | Msa0569090 | 0.831020 | 2.114241e-55 | -8.615850e-47 |
| Msa0091350 | Msa0569090 | 0.815566 | 8.656913e-52 | -8.615850e-47 |
| Msa0093860 | Msa0569090 | 0.807063 | 6.068313e-50 | -8.615850e-47 |
| Msa0112670 | Msa0569090 | 0.808416 | 3.131483e-50 | -8.615850e-47 |
| Msa0140380 | Msa0569090 | 0.816922 | 4.308240e-52 | -8.615850e-47 |
| Msa0161930 | Msa0569090 | 0.812421 | 4.276534e-51 | -8.615850e-47 |
| Msa0165830 | Msa0569090 | 0.807642 | 4.576027e-50 | -8.615850e-47 |
| Msa0373170 | Msa0569090 | 0.801975 | 6.986584e-49 | -8.615850e-47 |
| Msa0383000 | Msa0569090 | 0.821335 | 4.264185e-53 | -8.615850e-47 |
| Msa0412130 | Msa0569090 | 0.800660 | 1.298886e-48 | -8.615850e-47 |
| Msa0432010 | Msa0569090 | 0.802105 | 6.568706e-49 | -8.615850e-47 |
| Msa0433150 | Msa0569090 | 0.822497 | 2.294886e-53 | -8.615850e-47 |
| Msa0466520 | Msa0569090 | 0.811828 | 5.758222e-51 | -8.615850e-47 |
| Msa0513080 | Msa0569090 | 0.821553 | 3.797466e-53 | -8.615850e-47 |
| Msa0520870 | Msa0569090 | 0.820524 | 6.553969e-53 | -8.615850e-47 |
| Msa0521680 | Msa0569090 | 0.809101 | 2.234799e-50 | -8.615850e-47 |
| Msa0524520 | Msa0569090 | 0.821302 | 4.340002e-53 | -8.615850e-47 |
| Msa0553750 | Msa0569090 | 0.808856 | 2.521442e-50 | -8.615850e-47 |
| Msa0561560 | Msa0569090 | 0.813530 | 2.443566e-51 | -8.615850e-47 |
| Msa0563740 | Msa0569090 | 0.816758 | 4.688912e-52 | -8.615850e-47 |
| Msa0563980 | Msa0569090 | 0.837916 | 3.918604e-57 | -8.615850e-47 |
| Msa0569090 | Msa0571620 | 0.812468 | 4.175480e-51 | -8.615850e-47 |
| Msa0569090 | Msa0580200 | 0.888258 | 6.927574e-73 | -8.615850e-47 |
| Msa0569090 | Msa0606100 | 0.813182 | 2.913511e-51 | -8.615850e-47 |
| Msa0569090 | Msa0620500 | 0.803245 | 3.822066e-49 | -8.615850e-47 |
| Msa0569090 | Msa0621710 | 0.808858 | 2.518568e-50 | -8.615850e-47 |
| Msa0569090 | Msa0687090 | 0.810532 | 1.099908e-50 | -8.615850e-47 |
| Msa0569090 | Msa0691270 | 0.808599 | 2.860817e-50 | -8.615850e-47 |
| Msa0569090 | Msa0714520 | 0.802669 | 5.027829e-49 | -8.615850e-47 |
| Msa0569090 | Msa0718040 | 0.807145 | 5.830819e-50 | -8.615850e-47 |
| Msa0569090 | Msa0722220 | 0.800282 | 1.550651e-48 | -8.615850e-47 |
| Msa0569090 | Msa0740710 | 0.815864 | 7.430446e-52 | -8.615850e-47 |
| Msa0569090 | Msa0805680 | 0.818855 | 1.576486e-52 | -8.615850e-47 |
| Msa0569090 | Msa0817360 | 0.803823 | 2.900793e-49 | -8.615850e-47 |
| Msa0569090 | Msa0835350 | 0.807962 | 3.911959e-50 | -8.615850e-47 |
| Msa0569090 | Msa0909760 | 0.838094 | 3.526729e-57 | -8.615850e-47 |
| Msa0569090 | Msa0931590 | 0.807333 | 5.321750e-50 | -8.615850e-47 |
| Msa0569090 | Msa0966710 | 0.803150 | 3.998619e-49 | -8.615850e-47 |
| Msa0569090 | Msa1078880 | 0.800994 | 1.109858e-48 | -8.615850e-47 |
| Msa0569090 | Msa1078970 | 0.804655 | 1.945944e-49 | -8.615850e-47 |
| Msa0569090 | Msa1082380 | 0.811085 | 8.350031e-51 | -8.615850e-47 |
| Msa0569090 | Msa1090140 | 0.857743 | 1.325577e-62 | -8.615850e-47 |
| Msa0569090 | Msa1104220 | 0.810222 | 1.283252e-50 | -8.615850e-47 |
| Msa0569090 | Msa1116660 | 0.837505 | 4.995620e-57 | -8.615850e-47 |
| Msa0569090 | Msa1116740 | 0.822265 | 2.598602e-53 | -8.615850e-47 |
| Msa0569090 | Msa1162880 | 0.830917 | 2.242099e-55 | -8.615850e-47 |
| Msa0569090 | Msa1214350 | 0.802013 | 6.860374e-49 | -8.615850e-47 |
| Msa0569090 | Msa1215980 | 0.805351 | 1.392422e-49 | -8.615850e-47 |
| Msa0569090 | Msa1219770 | 0.804030 | 2.627001e-49 | -8.615850e-47 |
| Msa0569090 | Msa1223390 | 0.811168 | 8.014066e-51 | -8.615850e-47 |
| Msa0569090 | Msa1252790 | 0.808615 | 2.838428e-50 | -8.615850e-47 |
| Msa0569090 | Msa1254540 | 0.822766 | 1.987623e-53 | -8.615850e-47 |
| Msa0569090 | Msa1261050 | 0.809440 | 1.889907e-50 | -8.615850e-47 |
| Msa0569090 | Msa1263740 | 0.831739 | 1.407564e-55 | -8.615850e-47 |
| Msa0569090 | Msa1263780 | 0.829253 | 5.708946e-55 | -8.615850e-47 |
| Msa0569090 | Msa1279120 | 0.812949 | 3.277044e-51 | -8.615850e-47 |
| Msa0569090 | Msa1294460 | 0.815108 | 1.094400e-51 | -8.615850e-47 |
| Msa0569090 | Msa1300460 | 0.820484 | 6.695805e-53 | -8.615850e-47 |
| Msa0569090 | Msa1305920 | 0.803643 | 3.161665e-49 | -8.615850e-47 |
| Msa0569090 | Msa1364410 | 0.841978 | 3.423072e-58 | -8.615850e-47 |
| Msa0569090 | Msa1368750 | 0.804312 | 2.294934e-49 | -8.615850e-47 |
| Msa0569090 | Msa1374790 | 0.802800 | 4.723593e-49 | -8.615850e-47 |
| Msa0569090 | Msa1406720 | 0.806021 | 1.007160e-49 | -8.615850e-47 |
| Msa0569090 | Msa1450190 | 0.817347 | 3.456016e-52 | -8.615850e-47 |
| Msa0569090 | Msa1451820 | 0.804353 | 2.250075e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0569090 | MtrunA17_Chr8g0384161 | 96.860 | 605 | 14 | 1 | 1 | 605 | 1 | 600 | 0.0 | 1201 |
| Msa0569090 | MtrunA17_Chr2g0321211 | 28.426 | 394 | 220 | 10 | 11 | 374 | 11 | 372 | 1.01e-38 | 152 |
| Msa0569090 | MtrunA17_Chr4g0026671 | 27.228 | 404 | 216 | 11 | 11 | 374 | 11 | 376 | 6.50e-36 | 144 |
| Msa0569090 | MtrunA17_Chr1g0185501 | 38.346 | 133 | 76 | 1 | 59 | 191 | 22 | 148 | 1.00e-16 | 81.6 |
| Msa0569090 | MtrunA17_Chr1g0185501 | 29.688 | 128 | 84 | 1 | 54 | 181 | 59 | 180 | 3.47e-11 | 64.7 |
| Msa0569090 | MtrunA17_Chr1g0185501 | 26.794 | 209 | 102 | 5 | 16 | 182 | 114 | 313 | 5.22e-11 | 64.3 |
| Msa0569090 | MtrunA17_Chr6g0448921 | 27.848 | 158 | 97 | 3 | 25 | 181 | 29 | 170 | 6.10e-14 | 75.1 |
| Msa0569090 | MtrunA17_Chr6g0448921 | 25.610 | 164 | 107 | 2 | 18 | 181 | 64 | 212 | 1.53e-11 | 67.4 |
| Msa0569090 | MtrunA17_Chr7g0253861 | 29.496 | 139 | 92 | 2 | 44 | 181 | 35 | 168 | 3.12e-13 | 71.2 |
| Msa0569090 | MtrunA17_Chr4g0067151 | 28.019 | 207 | 130 | 5 | 55 | 244 | 18 | 222 | 6.36e-13 | 70.1 |
| Msa0569090 | MtrunA17_Chr5g0405851 | 29.762 | 168 | 102 | 4 | 21 | 187 | 261 | 413 | 9.33e-13 | 70.9 |
| Msa0569090 | MtrunA17_Chr1g0172501 | 27.381 | 168 | 106 | 3 | 21 | 187 | 364 | 516 | 2.08e-12 | 70.1 |
| Msa0569090 | MtrunA17_Chr3g0093681 | 27.381 | 168 | 106 | 3 | 21 | 187 | 364 | 516 | 2.37e-12 | 69.7 |
| Msa0569090 | MtrunA17_Chr2g0281451 | 25.000 | 232 | 138 | 7 | 28 | 243 | 31 | 242 | 5.60e-12 | 68.9 |
| Msa0569090 | MtrunA17_Chr3g0136971 | 25.882 | 170 | 111 | 3 | 12 | 181 | 418 | 572 | 8.51e-12 | 68.2 |
| Msa0569090 | MtrunA17_Chr8g0352821 | 28.571 | 168 | 103 | 5 | 16 | 181 | 312 | 464 | 1.59e-11 | 67.4 |
| Msa0569090 | MtrunA17_Chr4g0053651 | 28.947 | 190 | 109 | 6 | 7 | 187 | 367 | 539 | 1.65e-11 | 67.0 |
| Msa0569090 | MtrunA17_Chr3g0095501 | 28.444 | 225 | 137 | 8 | 34 | 244 | 242 | 456 | 3.89e-11 | 65.9 |
| Msa0569090 | MtrunA17_Chr1g0176241 | 30.894 | 123 | 79 | 1 | 60 | 182 | 366 | 482 | 4.79e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0569090 | AT5G64630.2 | 69.634 | 382 | 114 | 2 | 1 | 380 | 1 | 382 | 0.0 | 582 |
| Msa0569090 | AT5G64630.1 | 70.479 | 376 | 109 | 2 | 1 | 374 | 1 | 376 | 0.0 | 575 |
| Msa0569090 | AT5G64630.3 | 70.915 | 306 | 87 | 2 | 77 | 380 | 18 | 323 | 1.27e-163 | 474 |
| Msa0569090 | AT3G44530.2 | 27.411 | 394 | 222 | 11 | 11 | 374 | 11 | 370 | 8.70e-35 | 141 |
| Msa0569090 | AT3G44530.1 | 27.411 | 394 | 222 | 11 | 11 | 374 | 11 | 370 | 1.33e-34 | 140 |
| Msa0569090 | AT1G11160.3 | 29.412 | 170 | 103 | 4 | 13 | 181 | 16 | 169 | 1.43e-14 | 77.8 |
| Msa0569090 | AT1G11160.1 | 29.412 | 170 | 103 | 4 | 13 | 181 | 58 | 211 | 1.53e-14 | 77.8 |
| Msa0569090 | AT1G11160.2 | 29.412 | 170 | 103 | 4 | 13 | 181 | 58 | 211 | 1.57e-14 | 77.8 |
| Msa0569090 | AT1G11160.4 | 29.412 | 170 | 103 | 4 | 13 | 181 | 58 | 211 | 1.64e-14 | 77.8 |
| Msa0569090 | AT2G43770.1 | 30.935 | 139 | 90 | 2 | 44 | 181 | 33 | 166 | 7.60e-14 | 73.6 |
| Msa0569090 | AT5G67320.1 | 23.464 | 358 | 198 | 12 | 16 | 360 | 268 | 562 | 8.86e-14 | 74.7 |
| Msa0569090 | AT1G61210.2 | 29.677 | 155 | 93 | 3 | 28 | 181 | 72 | 211 | 1.08e-13 | 75.1 |
| Msa0569090 | AT1G61210.1 | 29.677 | 155 | 93 | 3 | 28 | 181 | 72 | 211 | 1.11e-13 | 75.1 |
| Msa0569090 | AT1G61210.3 | 29.677 | 155 | 93 | 3 | 28 | 181 | 72 | 211 | 1.22e-13 | 75.1 |
| Msa0569090 | AT3G49660.1 | 29.756 | 205 | 125 | 6 | 56 | 244 | 14 | 215 | 1.06e-12 | 69.7 |
| Msa0569090 | AT3G49660.1 | 28.977 | 176 | 108 | 3 | 12 | 184 | 154 | 315 | 3.85e-11 | 65.1 |
| Msa0569090 | AT5G08390.1 | 27.215 | 158 | 98 | 3 | 25 | 181 | 29 | 170 | 2.40e-12 | 70.5 |
| Msa0569090 | AT5G08390.1 | 27.273 | 154 | 97 | 2 | 28 | 181 | 74 | 212 | 5.62e-11 | 66.2 |
| Msa0569090 | AT5G23430.3 | 25.949 | 158 | 100 | 3 | 25 | 181 | 29 | 170 | 2.92e-12 | 70.5 |
| Msa0569090 | AT5G23430.3 | 27.273 | 154 | 97 | 2 | 28 | 181 | 74 | 212 | 4.85e-11 | 66.2 |
| Msa0569090 | AT5G23430.2 | 25.949 | 158 | 100 | 3 | 25 | 181 | 29 | 170 | 2.92e-12 | 70.5 |
| Msa0569090 | AT5G23430.2 | 27.273 | 154 | 97 | 2 | 28 | 181 | 74 | 212 | 4.85e-11 | 66.2 |
| Msa0569090 | AT5G23430.1 | 25.949 | 158 | 100 | 3 | 25 | 181 | 29 | 170 | 2.94e-12 | 70.5 |
| Msa0569090 | AT5G23430.1 | 27.273 | 154 | 97 | 2 | 28 | 181 | 74 | 212 | 4.93e-11 | 66.2 |
| Msa0569090 | AT3G21540.1 | 28.313 | 166 | 104 | 4 | 25 | 190 | 76 | 226 | 1.36e-11 | 68.2 |
| Msa0569090 | AT5G13480.3 | 27.811 | 169 | 105 | 5 | 16 | 182 | 240 | 393 | 3.24e-11 | 66.6 |
| Msa0569090 | AT5G52820.1 | 29.221 | 154 | 95 | 2 | 28 | 181 | 332 | 471 | 3.49e-11 | 66.2 |
| Msa0569090 | AT5G13480.4 | 27.811 | 169 | 105 | 5 | 16 | 182 | 240 | 393 | 3.49e-11 | 66.6 |
| Msa0569090 | AT5G13480.2 | 27.976 | 168 | 104 | 5 | 16 | 181 | 263 | 415 | 3.61e-11 | 66.6 |
| Msa0569090 | AT5G13480.1 | 27.811 | 169 | 105 | 5 | 16 | 182 | 252 | 405 | 4.28e-11 | 66.2 |
| Msa0569090 | AT5G25150.1 | 27.647 | 170 | 108 | 3 | 12 | 181 | 417 | 571 | 5.25e-11 | 66.2 |
| Msa0569090 | AT1G73720.1 | 29.878 | 164 | 108 | 2 | 21 | 184 | 221 | 377 | 5.26e-11 | 65.9 |
| Msa0569090 | AT5G25150.2 | 27.647 | 170 | 108 | 3 | 12 | 181 | 417 | 571 | 6.96e-11 | 65.9 |
| Msa0569090 | AT4G02730.1 | 29.139 | 151 | 97 | 3 | 41 | 187 | 17 | 161 | 7.21e-11 | 64.3 |
| Msa0569090 | AT2G41500.1 | 27.778 | 162 | 101 | 4 | 21 | 181 | 347 | 493 | 8.39e-11 | 65.5 |
| Msa0569090 | AT2G41500.2 | 27.778 | 162 | 101 | 4 | 21 | 181 | 347 | 493 | 8.39e-11 | 65.5 |
Find 172 sgRNAs with CRISPR-Local
Find 368 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCAACACCCTTTGATTTA+TGG | 0.105744 | 4_1:+70926127 | None:intergenic |
| TTGATAATTCTTGCATTATA+TGG | 0.142799 | 4_1:-70926395 | Msa0569090:CDS |
| CTAATTGGATTCGAGAATTT+AGG | 0.165281 | 4_1:+70927819 | None:intergenic |
| CCTCTTGTTGTTCCCTGTTT+TGG | 0.182888 | 4_1:-70922697 | Msa0569090:three_prime_UTR |
| CTCAACACCCTTTGATTTAT+GGG | 0.254796 | 4_1:+70926128 | None:intergenic |
| GCAAGATGGTTTCTGCTCTT+TGG | 0.262968 | 4_1:-70923603 | Msa0569090:CDS |
| TGTGCTGTCTTGCCAATATA+AGG | 0.270585 | 4_1:+70922536 | None:intergenic |
| ACCTTGGAATTCTTTAATAA+TGG | 0.273035 | 4_1:+70926060 | None:intergenic |
| TGTACACGGGCGGACGTTAA+TGG | 0.274606 | 4_1:+70922756 | None:intergenic |
| AAGCTTAAGGGACCAAATTC+AGG | 0.275040 | 4_1:-70924883 | Msa0569090:intron |
| GTGGAACGGTTCAGATTAAT+TGG | 0.283065 | 4_1:-70927775 | Msa0569090:CDS |
| GGGTAGCCTGGGACCCTTTA+GGG | 0.287919 | 4_1:-70926206 | Msa0569090:CDS |
| ATCTCATGTCAAGGACATTA+TGG | 0.295539 | 4_1:-70926463 | Msa0569090:CDS |
| GGTTTAGGCAGTATTAATTC+TGG | 0.297106 | 4_1:-70923011 | Msa0569090:CDS |
| CCTGTATTATTTAAGCTTAA+GGG | 0.297907 | 4_1:-70924895 | Msa0569090:CDS |
| AAACTGTCATTGCCTTATAT+TGG | 0.298149 | 4_1:-70922548 | Msa0569090:three_prime_UTR |
| TTGCAAGCATGTTATTTCTA+AGG | 0.302678 | 4_1:-70926091 | Msa0569090:CDS |
| TCCTGTATTATTTAAGCTTA+AGG | 0.303126 | 4_1:-70924896 | Msa0569090:CDS |
| TTATGGTCAGTTAAACCTTC+TGG | 0.304531 | 4_1:-70927560 | Msa0569090:CDS |
| ATAGAAGCATCTGCGGATAT+TGG | 0.310571 | 4_1:-70923320 | Msa0569090:CDS |
| CAGAATATGTAAACCAAAAC+AGG | 0.313462 | 4_1:+70922684 | None:intergenic |
| AAGAAGTTACGGCAGATATT+AGG | 0.314518 | 4_1:-70923154 | Msa0569090:CDS |
| GGAAAGAAAGAAAGGGAATT+TGG | 0.319336 | 4_1:+70927889 | None:intergenic |
| GTTATTCGCTTCTCTTCTTC+CGG | 0.322943 | 4_1:-70927470 | Msa0569090:intron |
| TAGGAGGTGAATTGTTAATA+TGG | 0.323433 | 4_1:-70927203 | Msa0569090:CDS |
| TAGAAGCATCTGCGGATATT+GGG | 0.324017 | 4_1:-70923319 | Msa0569090:CDS |
| TGTAGCAGAAAGCATGAAAA+TGG | 0.326121 | 4_1:-70923372 | Msa0569090:CDS |
| TCAGGGGAATTGTTAGCTTC+TGG | 0.327465 | 4_1:-70927342 | Msa0569090:intron |
| TACCAGGTAATATCTGTTAC+TGG | 0.342872 | 4_1:+70923756 | None:intergenic |
| GGGGTAGCCTGGGACCCTTT+AGG | 0.345674 | 4_1:-70926207 | Msa0569090:CDS |
| ACGGCAAATACAATGCGATA+TGG | 0.353051 | 4_1:+70923858 | None:intergenic |
| GCGAGGAGAATGCTAAATAA+TGG | 0.354160 | 4_1:+70923624 | None:intergenic |
| TCTTAAGAACCTTCCATGTT+TGG | 0.355215 | 4_1:+70927157 | None:intergenic |
| TTTCTAGAAAAGATCTTTCT+CGG | 0.365269 | 4_1:-70925137 | Msa0569090:intron |
| TGATAATTCTTGCATTATAT+GGG | 0.369746 | 4_1:-70926394 | Msa0569090:CDS |
| TAATTGGATTCGAGAATTTA+GGG | 0.372592 | 4_1:+70927820 | None:intergenic |
| GACGTGATCATCAAATCAAC+TGG | 0.376440 | 4_1:-70923248 | Msa0569090:CDS |
| GCTTCACTTTGTTTACCATC+TGG | 0.376477 | 4_1:+70922954 | None:intergenic |
| GAAAGGGAATTTGGCGCTCT+TGG | 0.376847 | 4_1:+70927898 | None:intergenic |
| TAAATACAAGTACCTGAATT+TGG | 0.379771 | 4_1:+70924871 | None:intergenic |
| ATTTCAGGTTCTTACAAAAT+CGG | 0.390240 | 4_1:-70925195 | Msa0569090:intron |
| ACAACTAGGACTGCAAATAT+TGG | 0.390908 | 4_1:-70923089 | Msa0569090:CDS |
| CCTGGCTGGCTTATTTGAGA+TGG | 0.391197 | 4_1:+70922833 | None:intergenic |
| GCAATGACAGTTTGCTAACT+AGG | 0.397079 | 4_1:+70922558 | None:intergenic |
| AATAAACCGCTTAGTGGTTT+AGG | 0.401829 | 4_1:-70923026 | Msa0569090:CDS |
| GGGGCTTACTGATGTAAATT+CGG | 0.412302 | 4_1:+70926148 | None:intergenic |
| AATAGGTGTAATGCGCTTCC+TGG | 0.413685 | 4_1:+70922815 | None:intergenic |
| TGTTTACCATCTGGATTAGC+TGG | 0.414235 | 4_1:+70922963 | None:intergenic |
| AATCATGGATCAATTGCAAT+AGG | 0.415154 | 4_1:+70922798 | None:intergenic |
| GTCGAAATCGGCGCCGGCGG+TGG | 0.417147 | 4_1:+70927697 | None:intergenic |
| GAGTACCTTGATGTCGAAAT+CGG | 0.419824 | 4_1:+70927685 | None:intergenic |
| ACAGAAAATAAACCGCTTAG+TGG | 0.420179 | 4_1:-70923032 | Msa0569090:CDS |
| AATGATGCTGTACTGCCAAC+TGG | 0.420457 | 4_1:-70923410 | Msa0569090:CDS |
| ATGAAAATCTAGAGTCAAAA+CGG | 0.424835 | 4_1:+70927739 | None:intergenic |
| CTGGCTGGCTTATTTGAGAT+GGG | 0.426598 | 4_1:+70922834 | None:intergenic |
| GGACGTTAATGGAGCTTCTC+TGG | 0.427242 | 4_1:+70922767 | None:intergenic |
| TCTCCAATAGCAATATTTGC+TGG | 0.427714 | 4_1:-70923792 | Msa0569090:CDS |
| TACCCATGCACACTATGTTC+AGG | 0.428891 | 4_1:-70926229 | Msa0569090:CDS |
| GATGGGCGTGCTCTTTGAAC+TGG | 0.432357 | 4_1:+70922851 | None:intergenic |
| AGAACATAAAGCTGATGATA+TGG | 0.434203 | 4_1:-70923183 | Msa0569090:CDS |
| CGGCAAATACAATGCGATAT+GGG | 0.436720 | 4_1:+70923859 | None:intergenic |
| GTGCAATTATAGCTGACAAT+AGG | 0.437372 | 4_1:-70923217 | Msa0569090:CDS |
| CGAGGAGAATGCTAAATAAT+GGG | 0.437934 | 4_1:+70923625 | None:intergenic |
| AGTTGGCAGTACAGCATCAT+TGG | 0.441293 | 4_1:+70923412 | None:intergenic |
| AAGCAATATACTTCCCTAAA+GGG | 0.441686 | 4_1:+70926193 | None:intergenic |
| CAAAACTGTAATACAAGATA+AGG | 0.454159 | 4_1:-70923276 | Msa0569090:CDS |
| TCATTTCTACTTGTGCCTGC+AGG | 0.457534 | 4_1:-70925875 | Msa0569090:intron |
| TGATGTAAATTCGGCAAGTC+CGG | 0.458166 | 4_1:+70926157 | None:intergenic |
| GAAGCAATATACTTCCCTAA+AGG | 0.462365 | 4_1:+70926192 | None:intergenic |
| AGATGGTTTCTGCTCTTTGG+TGG | 0.462913 | 4_1:-70923600 | Msa0569090:CDS |
| GAGGTAAGGGAAAGAAAGAA+AGG | 0.467887 | 4_1:+70927881 | None:intergenic |
| CCCTTAAGCTTAAATAATAC+AGG | 0.469969 | 4_1:+70924895 | None:intergenic |
| AGGCCAGCAAATATTGCTAT+TGG | 0.470462 | 4_1:+70923789 | None:intergenic |
| GAAAATGGAAGTGGAAGAAA+AGG | 0.470474 | 4_1:-70923357 | Msa0569090:CDS |
| CCAAAACAGGGAACAACAAG+AGG | 0.473349 | 4_1:+70922697 | None:intergenic |
| CTTTCTTTAGAAGATTAGCT+TGG | 0.475618 | 4_1:-70925910 | Msa0569090:CDS |
| GATGGTGGATATATCATATC+CGG | 0.477811 | 4_1:-70926423 | Msa0569090:CDS |
| AGCTAATCTTCTAAAGAAAG+AGG | 0.478727 | 4_1:+70925913 | None:intergenic |
| AGTTTGCTAACTAGGAAAGT+TGG | 0.479811 | 4_1:+70922566 | None:intergenic |
| AATGCTAAATAATGGGCATC+AGG | 0.480540 | 4_1:+70923632 | None:intergenic |
| GGAAGGTTCTTAAGATGTTA+CGG | 0.484149 | 4_1:-70927149 | Msa0569090:intron |
| TTGTTAGCTTCTGGTTCTGA+TGG | 0.487437 | 4_1:-70927333 | Msa0569090:intron |
| GAAATCTAGAAACTGAGGTA+AGG | 0.488899 | 4_1:+70927867 | None:intergenic |
| GCAAGAATTATCAACTGATC+CGG | 0.489164 | 4_1:+70926404 | None:intergenic |
| GGCGCCGGCGGTGGCGAGAG+TGG | 0.492172 | 4_1:+70927706 | None:intergenic |
| GGTGTAATGCGCTTCCTGGC+TGG | 0.492898 | 4_1:+70922819 | None:intergenic |
| TCTGAGGCAGCACAAAAGAC+AGG | 0.494736 | 4_1:-70922885 | Msa0569090:CDS |
| TTGCTTCTCTTAGTTCTGAC+CGG | 0.499917 | 4_1:-70926176 | Msa0569090:CDS |
| CTATTGACATAAGTAACTAC+TGG | 0.500469 | 4_1:+70927521 | None:intergenic |
| TCCTCCACTCTCGCCACCGC+CGG | 0.506417 | 4_1:-70927710 | Msa0569090:CDS |
| TTGTTTCGACGCCTTCTCTT+CGG | 0.508062 | 4_1:+70922986 | None:intergenic |
| ATCAAATCAACTGGGAATGT+TGG | 0.509725 | 4_1:-70923239 | Msa0569090:CDS |
| TATGGTCATTGAAGAAGTTA+CGG | 0.513659 | 4_1:-70923165 | Msa0569090:CDS |
| TGAAAATCTAGAGTCAAAAC+GGG | 0.514160 | 4_1:+70927740 | None:intergenic |
| TGTTCTAGAAGAAAATGTCT+TGG | 0.518483 | 4_1:-70923462 | Msa0569090:intron |
| CAAAACAGGGAACAACAAGA+GGG | 0.519305 | 4_1:+70922698 | None:intergenic |
| TCTAGAAGAAAATGTCTTGG+AGG | 0.520903 | 4_1:-70923459 | Msa0569090:intron |
| ACTAAAACAAGAGGTCCAAA+AGG | 0.520945 | 4_1:+70922598 | None:intergenic |
| TCAACACCCTTTGATTTATG+GGG | 0.521191 | 4_1:+70926129 | None:intergenic |
| GAGTTCGAAAATGACGAACT+TGG | 0.523533 | 4_1:-70923578 | Msa0569090:CDS |
| CTCCAGTAACAGATATTACC+TGG | 0.525209 | 4_1:-70923758 | Msa0569090:intron |
| ACCCATGCACACTATGTTCA+GGG | 0.526102 | 4_1:-70926228 | Msa0569090:CDS |
| CAGTAAGCCCCATAAATCAA+AGG | 0.530540 | 4_1:-70926136 | Msa0569090:CDS |
| ACAAAGTGAAGCAGAAGAGA+AGG | 0.531573 | 4_1:-70922943 | Msa0569090:CDS |
| GTACTGCCAACTGGGAGTGT+TGG | 0.531914 | 4_1:-70923401 | Msa0569090:CDS |
| CAGCATCATTGGCTGTCTGA+AGG | 0.533000 | 4_1:+70923423 | None:intergenic |
| GCACACGGAAGCTGTATAGC+AGG | 0.533198 | 4_1:+70924949 | None:intergenic |
| AAGCTACATTCAACGGATAC+CGG | 0.534046 | 4_1:-70927180 | Msa0569090:CDS |
| ACAAGTAGAAATGAACCATC+TGG | 0.534204 | 4_1:+70925884 | None:intergenic |
| GCCATTATTAAAGAATTCCA+AGG | 0.535247 | 4_1:-70926061 | Msa0569090:intron |
| CCATCTCAAATAAGCCAGCC+AGG | 0.539372 | 4_1:-70922833 | Msa0569090:CDS |
| ATACTTCCCTAAAGGGTCCC+AGG | 0.540607 | 4_1:+70926200 | None:intergenic |
| CATGGGTATCCAACGTCTGA+AGG | 0.542223 | 4_1:+70926244 | None:intergenic |
| CTGAATTAGATCTCATGTCA+AGG | 0.544197 | 4_1:-70926472 | Msa0569090:intron |
| TGCTTACTTGATAAGCAGTA+AGG | 0.544917 | 4_1:+70923551 | None:intergenic |
| CACCATCAGTAGACCACTCC+AGG | 0.547065 | 4_1:+70926439 | None:intergenic |
| AAATCTAGAAACTGAGGTAA+GGG | 0.549698 | 4_1:+70927868 | None:intergenic |
| AAGAACCTTCCATGTTTGGC+CGG | 0.550032 | 4_1:+70927161 | None:intergenic |
| AAGAGGGCAATGTTTCATCA+TGG | 0.552525 | 4_1:+70925930 | None:intergenic |
| AGTAAGCCCCATAAATCAAA+GGG | 0.552990 | 4_1:-70926135 | Msa0569090:CDS |
| AGGTAAGGGAAAGAAAGAAA+GGG | 0.554936 | 4_1:+70927882 | None:intergenic |
| AGAAGCATCTGCGGATATTG+GGG | 0.556121 | 4_1:-70923318 | Msa0569090:CDS |
| CAATGAATTCAATGTGGCCA+CGG | 0.558304 | 4_1:+70923839 | None:intergenic |
| AGCATCATTGGCTGTCTGAA+GGG | 0.562358 | 4_1:+70923424 | None:intergenic |
| CTTGATGTCGAAATCGGCGC+CGG | 0.562663 | 4_1:+70927691 | None:intergenic |
| AGAAAGCATGAAAATGGAAG+TGG | 0.567606 | 4_1:-70923366 | Msa0569090:CDS |
| GATCGAAGATCGAAAATGAA+AGG | 0.568510 | 4_1:-70927797 | Msa0569090:exon |
| CAACGGATACCGGCCAAACA+TGG | 0.571072 | 4_1:-70927170 | Msa0569090:CDS |
| ACATGATCATTGAGACAACT+AGG | 0.572546 | 4_1:-70923103 | Msa0569090:CDS |
| TTAGCATTCTCCTCGCAAGA+TGG | 0.577028 | 4_1:-70923617 | Msa0569090:CDS |
| GATGTCGAAATCGGCGCCGG+CGG | 0.578100 | 4_1:+70927694 | None:intergenic |
| GCTAATCTTCTAAAGAAAGA+GGG | 0.578416 | 4_1:+70925914 | None:intergenic |
| GTGGCGAGAGTGGAGGAGAG+AGG | 0.578840 | 4_1:+70927716 | None:intergenic |
| AAACAGGGAACAACAAGAGG+GGG | 0.579109 | 4_1:+70922700 | None:intergenic |
| TAATTCTGGAGCCGAAGAGA+AGG | 0.580982 | 4_1:-70922997 | Msa0569090:CDS |
| AATATGGAAGCTACATTCAA+CGG | 0.583979 | 4_1:-70927187 | Msa0569090:CDS |
| ATATCGCATTGTATTTGCCG+TGG | 0.587379 | 4_1:-70923856 | Msa0569090:CDS |
| GACCTGGAGTGGTCTACTGA+TGG | 0.591206 | 4_1:-70926441 | Msa0569090:CDS |
| CGAAGATCGAAAATGAAAGG+TGG | 0.592725 | 4_1:-70927794 | Msa0569090:exon |
| AAAACAGGGAACAACAAGAG+GGG | 0.592752 | 4_1:+70922699 | None:intergenic |
| CGGCGCCGATTTCGACATCA+AGG | 0.597052 | 4_1:-70927690 | Msa0569090:intron |
| GGAAGAAAAGGTTGATGACA+TGG | 0.598747 | 4_1:-70923345 | Msa0569090:CDS |
| ATGATGCTGTACTGCCAACT+GGG | 0.600017 | 4_1:-70923409 | Msa0569090:CDS |
| TGTCAAGGACATTATGGACC+TGG | 0.600660 | 4_1:-70926457 | Msa0569090:CDS |
| ATCGAAAATGAAAGGTGGAA+CGG | 0.602727 | 4_1:-70927789 | Msa0569090:exon |
| GCCGGCGGTGGCGAGAGTGG+AGG | 0.602972 | 4_1:+70927709 | None:intergenic |
| ATGCTGTCCGAAGTTGATTG+TGG | 0.605226 | 4_1:+70922912 | None:intergenic |
| CTGGAGTGGTCTACTGATGG+TGG | 0.606311 | 4_1:-70926438 | Msa0569090:CDS |
| AGATTAGCTTGGTCTCCAGA+TGG | 0.606836 | 4_1:-70925899 | Msa0569090:CDS |
| CCCCTGAACATAGTGTGCAT+GGG | 0.610840 | 4_1:+70926227 | None:intergenic |
| ACAACAGCTTTGCTTGCACA+CGG | 0.611738 | 4_1:+70924934 | None:intergenic |
| AGGAACTAACCTTCAGACGT+TGG | 0.618886 | 4_1:-70926253 | Msa0569090:CDS |
| AGATAAACCACAATCAACTT+CGG | 0.619414 | 4_1:-70922919 | Msa0569090:CDS |
| CTGAGGCAGCACAAAAGACA+GGG | 0.619610 | 4_1:-70922884 | Msa0569090:CDS |
| AAACAACCAGCTAATCCAGA+TGG | 0.634861 | 4_1:-70922969 | Msa0569090:CDS |
| ATGTAGAAATCTAGAAACTG+AGG | 0.637464 | 4_1:+70927862 | None:intergenic |
| ATTATATGGGATGTTAACAA+AGG | 0.639783 | 4_1:-70926381 | Msa0569090:intron |
| GGATACCGGCCAAACATGGA+AGG | 0.640280 | 4_1:-70927166 | Msa0569090:CDS |
| CTGTTACTGGAGCATAGTGA+AGG | 0.641031 | 4_1:+70923769 | None:intergenic |
| CCCATGCACACTATGTTCAG+GGG | 0.644214 | 4_1:-70926227 | Msa0569090:CDS |
| TTCGGACAGCATAAAATCTG+AGG | 0.646284 | 4_1:-70922901 | Msa0569090:CDS |
| AAACCTATGACTAAAACAAG+AGG | 0.649877 | 4_1:+70922589 | None:intergenic |
| AGGACATTATGGACCTGGAG+TGG | 0.656666 | 4_1:-70926452 | Msa0569090:CDS |
| ACTGCACCAACACTCCCAGT+TGG | 0.657606 | 4_1:+70923395 | None:intergenic |
| CATGGACATAGAAGCATCTG+CGG | 0.658877 | 4_1:-70923327 | Msa0569090:CDS |
| AGAGCAGAAACCATCTTGCG+AGG | 0.660888 | 4_1:+70923607 | None:intergenic |
| AACAGGGAACAACAAGAGGG+GGG | 0.671906 | 4_1:+70922701 | None:intergenic |
| ACGTGATCATCAAATCAACT+GGG | 0.672733 | 4_1:-70923247 | Msa0569090:CDS |
| CCATGCACACTATGTTCAGG+GGG | 0.683808 | 4_1:-70926226 | Msa0569090:CDS |
| ATACTGCCTAAACCACTAAG+CGG | 0.687500 | 4_1:+70923020 | None:intergenic |
| AATGTACAATGAATTCAATG+TGG | 0.699967 | 4_1:+70923833 | None:intergenic |
| AGAATATGTAAACCAAAACA+GGG | 0.715313 | 4_1:+70922685 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATTATTTTAAATTAAAA+CGG | + | chr4_1:70923703-70923722 | None:intergenic | 0.0% |
| !!! | TTTTTTTTTTTTTATGTTTC+AGG | - | chr4_1:70923019-70923038 | Msa0569090:CDS | 10.0% |
| !!! | TTTTTTTTTTTTATGTTTCA+GGG | - | chr4_1:70923020-70923039 | Msa0569090:CDS | 10.0% |
| !!! | ATTATTTAGCTTTTTTTTTT+AGG | - | chr4_1:70923293-70923312 | Msa0569090:CDS | 10.0% |
| !!! | TATGATGTTTTTTTTTTTTT+TGG | - | chr4_1:70926685-70926704 | Msa0569090:intron | 10.0% |
| !!! | ATGATGTTTTTTTTTTTTTT+GGG | - | chr4_1:70926686-70926705 | Msa0569090:intron | 10.0% |
| !! | TAACTAATTAATTGAATGAT+GGG | + | chr4_1:70922737-70922756 | None:intergenic | 15.0% |
| !! | TTAACTAATTAATTGAATGA+TGG | + | chr4_1:70922738-70922757 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTTATGTTTCAG+GGG | - | chr4_1:70923021-70923040 | Msa0569090:CDS | 15.0% |
| !!! | CTATTTTTTTGTTTCTTTTT+AGG | - | chr4_1:70923157-70923176 | Msa0569090:CDS | 15.0% |
| !! | AAAGGTTATTATTATTTCAT+AGG | - | chr4_1:70923767-70923786 | Msa0569090:CDS | 15.0% |
| !!! | AACTAACAATACATAAATTT+TGG | + | chr4_1:70924982-70925001 | None:intergenic | 15.0% |
| !!! | ATGATGGTTTTTATAATATT+GGG | + | chr4_1:70925628-70925647 | None:intergenic | 15.0% |
| !! | TAGACAATTATTGAATAAAT+AGG | - | chr4_1:70925873-70925892 | Msa0569090:intron | 15.0% |
| !! | AGACAATTATTGAATAAATA+GGG | - | chr4_1:70925874-70925893 | Msa0569090:intron | 15.0% |
| !! | TTTCAATGAAATGAATTTAC+CGG | + | chr4_1:70922931-70922950 | None:intergenic | 20.0% |
| !!! | TTTTTTTGTTTCTTTTTAGG+AGG | - | chr4_1:70923160-70923179 | Msa0569090:CDS | 20.0% |
| !! | TATTTCTCTCTTTCATTAAA+TGG | + | chr4_1:70923398-70923417 | None:intergenic | 20.0% |
| !!! | AAGAAAATTATTGATTTCCT+AGG | - | chr4_1:70923514-70923533 | Msa0569090:intron | 20.0% |
| !!! | AATTTTGTTTGATTTCTTTC+TGG | - | chr4_1:70923726-70923745 | Msa0569090:intron | 20.0% |
| !!! | TTGATAATTCTTGCATTATA+TGG | - | chr4_1:70923984-70924003 | Msa0569090:intron | 20.0% |
| !! | TGATAATTCTTGCATTATAT+GGG | - | chr4_1:70923985-70924004 | Msa0569090:intron | 20.0% |
| !! | GCAAAAAAAGTAAGATAAAT+TGG | + | chr4_1:70924559-70924578 | None:intergenic | 20.0% |
| !! | AAATAGTATATATCATTCAG+TGG | + | chr4_1:70925091-70925110 | None:intergenic | 20.0% |
| !!! | TATACTATTTTCTTCCTTTA+TGG | - | chr4_1:70925101-70925120 | Msa0569090:intron | 20.0% |
| !!! | ATGATAAAAAGTATGCTTTT+GGG | + | chr4_1:70925297-70925316 | None:intergenic | 20.0% |
| !!! | AATGATAAAAAGTATGCTTT+TGG | + | chr4_1:70925298-70925317 | None:intergenic | 20.0% |
| !!! | TTTTTATAATATTGGGCAAA+AGG | + | chr4_1:70925621-70925640 | None:intergenic | 20.0% |
| !!! | CATGATGGTTTTTATAATAT+TGG | + | chr4_1:70925629-70925648 | None:intergenic | 20.0% |
| !! | CAATATTATAAAAACCATCA+TGG | - | chr4_1:70925627-70925646 | Msa0569090:intron | 20.0% |
| !! | TCCGTTCAATTTATTAAAAT+AGG | - | chr4_1:70925683-70925702 | Msa0569090:intron | 20.0% |
| !!! | GCCTATTTTAATAAATTGAA+CGG | + | chr4_1:70925687-70925706 | None:intergenic | 20.0% |
| !! | TAACAATCTTTACTAATAAG+AGG | + | chr4_1:70925758-70925777 | None:intergenic | 20.0% |
| !! | TTATTAGTAAAGATTGTTAG+AGG | - | chr4_1:70925759-70925778 | Msa0569090:intron | 20.0% |
| !! | TCCTACAATATCAATATTAT+TGG | - | chr4_1:70926147-70926166 | Msa0569090:CDS | 20.0% |
| !! | ACCAATAATATTGATATTGT+AGG | + | chr4_1:70926151-70926170 | None:intergenic | 20.0% |
| !! | TACAATATCAATATTATTGG+TGG | - | chr4_1:70926150-70926169 | Msa0569090:CDS | 20.0% |
| !!! | ATGTAGTTTCTATTTCTTAT+TGG | - | chr4_1:70926178-70926197 | Msa0569090:CDS | 20.0% |
| !! | TTGTTTATCTATTGATATAG+TGG | - | chr4_1:70926322-70926341 | Msa0569090:intron | 20.0% |
| !!! | ACTTTAAAATAATGATTGGT+AGG | + | chr4_1:70926422-70926441 | None:intergenic | 20.0% |
| !!! | CAGAACTTTAAAATAATGAT+TGG | + | chr4_1:70926426-70926445 | None:intergenic | 20.0% |
| !!! | GTTTTTTTTTTTTTTGGGAA+AGG | - | chr4_1:70926691-70926710 | Msa0569090:intron | 20.0% |
| ! | TAATTGGATTCGAGAATTTA+GGG | + | chr4_1:70922562-70922581 | None:intergenic | 25.0% |
| !! | ATGAAAATCTAGAGTCAAAA+CGG | + | chr4_1:70922643-70922662 | None:intergenic | 25.0% |
| ! | AAAAAGAAAAATCAACAGCA+GGG | + | chr4_1:70923084-70923103 | None:intergenic | 25.0% |
| ! | AGAAATCTAATCAGAAACAT+TGG | + | chr4_1:70923139-70923158 | None:intergenic | 25.0% |
| ! | AGCTAAATAATGCAAATAAG+TGG | + | chr4_1:70923284-70923303 | None:intergenic | 25.0% |
| ! | CAAAATAAGAACTTGAAATG+TGG | - | chr4_1:70923562-70923581 | Msa0569090:CDS | 25.0% |
| ! | AAAAGTAGATATGGAAGTAA+AGG | - | chr4_1:70923749-70923768 | Msa0569090:intron | 25.0% |
| !!! | GTATGATTGATTTTTGTGAA+TGG | + | chr4_1:70923814-70923833 | None:intergenic | 25.0% |
| ! | ATTGATGCAGTAAAACATAA+AGG | + | chr4_1:70923863-70923882 | None:intergenic | 25.0% |
| ! | ATTATATGGGATGTTAACAA+AGG | - | chr4_1:70923998-70924017 | Msa0569090:intron | 25.0% |
| ! | ACCTTGGAATTCTTTAATAA+TGG | + | chr4_1:70924322-70924341 | None:intergenic | 25.0% |
| ! | TGTGTATTATTCATTGCAAA+TGG | - | chr4_1:70924638-70924657 | Msa0569090:intron | 25.0% |
| !! | GATTTTCTGTTATAAAACAG+AGG | + | chr4_1:70924781-70924800 | None:intergenic | 25.0% |
| ! | TATGATAGGATACTGAATTT+GGG | + | chr4_1:70924852-70924871 | None:intergenic | 25.0% |
| ! | TTATGATAGGATACTGAATT+TGG | + | chr4_1:70924853-70924872 | None:intergenic | 25.0% |
| ! | AATCTCTATGCAATTATGAT+AGG | + | chr4_1:70924866-70924885 | None:intergenic | 25.0% |
| ! | TTCCAGTGAATGAAATATAA+TGG | + | chr4_1:70924926-70924945 | None:intergenic | 25.0% |
| ! | ATAGTTTAGATGCAACTTAT+AGG | - | chr4_1:70925060-70925079 | Msa0569090:intron | 25.0% |
| !! | ATTTTGTAAGAACCTGAAAT+GGG | + | chr4_1:70925184-70925203 | None:intergenic | 25.0% |
| !!! | ATTTCAGGTTCTTACAAAAT+CGG | - | chr4_1:70925184-70925203 | Msa0569090:CDS | 25.0% |
| !! | TTTCTAGAAAAGATCTTTCT+CGG | - | chr4_1:70925242-70925261 | Msa0569090:intron | 25.0% |
| ! | ATTATTTAACCTTGATATGC+AGG | - | chr4_1:70925407-70925426 | Msa0569090:intron | 25.0% |
| ! | TCCTGTATTATTTAAGCTTA+AGG | - | chr4_1:70925483-70925502 | Msa0569090:intron | 25.0% |
| ! | CCTGTATTATTTAAGCTTAA+GGG | - | chr4_1:70925484-70925503 | Msa0569090:intron | 25.0% |
| ! | TAAATACAAGTACCTGAATT+TGG | + | chr4_1:70925511-70925530 | None:intergenic | 25.0% |
| ! | AACTAGTTATACATAGTTAC+TGG | + | chr4_1:70925537-70925556 | None:intergenic | 25.0% |
| ! | TTAGACAGGTTTATGTTATT+AGG | - | chr4_1:70925817-70925836 | Msa0569090:intron | 25.0% |
| ! | TAGGGAAATTGAATATTGAT+TGG | - | chr4_1:70925892-70925911 | Msa0569090:CDS | 25.0% |
| !!! | AATGGGTTCTTTTACAAATT+AGG | + | chr4_1:70925995-70926014 | None:intergenic | 25.0% |
| !!! | TGTTTTTGTTTATTGCAGAT+GGG | - | chr4_1:70926486-70926505 | Msa0569090:intron | 25.0% |
| ! | AATGTACAATGAATTCAATG+TGG | + | chr4_1:70926549-70926568 | None:intergenic | 25.0% |
| ! | TTACCTGGTAAATGTTATAA+CGG | - | chr4_1:70926636-70926655 | Msa0569090:intron | 25.0% |
| ! | AATCATAGCATGAAATGAAA+GGG | + | chr4_1:70926859-70926878 | None:intergenic | 25.0% |
| !!! | TTCTAGAACAATGTAGAAAA+GGG | + | chr4_1:70926907-70926926 | None:intergenic | 25.0% |
| ! | CAAAACTGTAATACAAGATA+AGG | - | chr4_1:70927103-70927122 | Msa0569090:intron | 25.0% |
| ! | AGAATATGTAAACCAAAACA+GGG | + | chr4_1:70927697-70927716 | None:intergenic | 25.0% |
| !!! | TCATTTTGAAGATTTCCTTT+TGG | - | chr4_1:70927766-70927785 | Msa0569090:CDS | 25.0% |
| !! | TTTATGTTATGACTTTTGTG+AGG | - | chr4_1:70927891-70927910 | Msa0569090:five_prime_UTR | 25.0% |
| AAATCTAGAAACTGAGGTAA+GGG | + | chr4_1:70922514-70922533 | None:intergenic | 30.0% | |
| ATGTAGAAATCTAGAAACTG+AGG | + | chr4_1:70922520-70922539 | None:intergenic | 30.0% | |
| CTAATTGGATTCGAGAATTT+AGG | + | chr4_1:70922563-70922582 | None:intergenic | 30.0% | |
| ! | TTTTCGATCTTCGATCTAAT+TGG | + | chr4_1:70922578-70922597 | None:intergenic | 30.0% |
| ! | TGAAAATCTAGAGTCAAAAC+GGG | + | chr4_1:70922642-70922661 | None:intergenic | 30.0% |
| TGTTCTAATCTTCACAGTTA+TGG | - | chr4_1:70922802-70922821 | Msa0569090:CDS | 30.0% | |
| CTATTGACATAAGTAACTAC+TGG | + | chr4_1:70922861-70922880 | None:intergenic | 30.0% | |
| CAAAAAGAAAAATCAACAGC+AGG | + | chr4_1:70923085-70923104 | None:intergenic | 30.0% | |
| TAGGAGGTGAATTGTTAATA+TGG | - | chr4_1:70923176-70923195 | Msa0569090:CDS | 30.0% | |
| AATATGGAAGCTACATTCAA+CGG | - | chr4_1:70923192-70923211 | Msa0569090:CDS | 30.0% | |
| TGCTAACTAATTGTCGATAA+CGG | - | chr4_1:70923366-70923385 | Msa0569090:CDS | 30.0% | |
| AATGCGATGATAAATAGAGA+AGG | - | chr4_1:70923423-70923442 | Msa0569090:CDS | 30.0% | |
| ATGCGATGATAAATAGAGAA+GGG | - | chr4_1:70923424-70923443 | Msa0569090:CDS | 30.0% | |
| TTTAAATGTAGAAGAAGCCA+AGG | + | chr4_1:70923662-70923681 | None:intergenic | 30.0% | |
| ! | TCTTTCTGGAAAAGTAGATA+TGG | - | chr4_1:70923740-70923759 | Msa0569090:intron | 30.0% |
| CATCAATTAGCTGGTTAAAA+TGG | - | chr4_1:70923876-70923895 | Msa0569090:CDS | 30.0% | |
| AAGCAATATACTTCCCTAAA+GGG | + | chr4_1:70924189-70924208 | None:intergenic | 30.0% | |
| !! | TTGCAAGCATGTTATTTCTA+AGG | - | chr4_1:70924288-70924307 | Msa0569090:intron | 30.0% |
| GCCATTATTAAAGAATTCCA+AGG | - | chr4_1:70924318-70924337 | Msa0569090:intron | 30.0% | |
| ! | TAGATATCTAAAGCTAACCT+TGG | + | chr4_1:70924338-70924357 | None:intergenic | 30.0% |
| ! | GCTAATCTTCTAAAGAAAGA+GGG | + | chr4_1:70924468-70924487 | None:intergenic | 30.0% |
| ! | AGCTAATCTTCTAAAGAAAG+AGG | + | chr4_1:70924469-70924488 | None:intergenic | 30.0% |
| ! | CTTTCTTTAGAAGATTAGCT+TGG | - | chr4_1:70924469-70924488 | Msa0569090:intron | 30.0% |
| ! | ATCAAGATTAACTTCTGGTT+AGG | + | chr4_1:70924536-70924555 | None:intergenic | 30.0% |
| ATTGGATCAAGATTAACTTC+TGG | + | chr4_1:70924541-70924560 | None:intergenic | 30.0% | |
| GTGAATAAGCTATTGCAATT+TGG | - | chr4_1:70924588-70924607 | Msa0569090:intron | 30.0% | |
| TGTTATAAAACAGAGGATAG+GGG | + | chr4_1:70924774-70924793 | None:intergenic | 30.0% | |
| CTGTTATAAAACAGAGGATA+GGG | + | chr4_1:70924775-70924794 | None:intergenic | 30.0% | |
| TCTGTTATAAAACAGAGGAT+AGG | + | chr4_1:70924776-70924795 | None:intergenic | 30.0% | |
| GTCCATTATATTTCATTCAC+TGG | - | chr4_1:70924921-70924940 | Msa0569090:CDS | 30.0% | |
| ATATTTCATTCACTGGAAAG+TGG | - | chr4_1:70924928-70924947 | Msa0569090:CDS | 30.0% | |
| ACAGTTCACTAAACAACAAA+GGG | + | chr4_1:70925037-70925056 | None:intergenic | 30.0% | |
| ! | GATTTTGTAAGAACCTGAAA+TGG | + | chr4_1:70925185-70925204 | None:intergenic | 30.0% |
| CCCTTAAGCTTAAATAATAC+AGG | + | chr4_1:70925487-70925506 | None:intergenic | 30.0% | |
| !! | TATGTATAACTAGTTCTACG+TGG | - | chr4_1:70925542-70925561 | Msa0569090:intron | 30.0% |
| TTACAATTGAATTGCTTGAG+TGG | - | chr4_1:70925570-70925589 | Msa0569090:intron | 30.0% | |
| TACAATTGAATTGCTTGAGT+GGG | - | chr4_1:70925571-70925590 | Msa0569090:intron | 30.0% | |
| ATAACATAAACCTGTCTAAC+TGG | + | chr4_1:70925816-70925835 | None:intergenic | 30.0% | |
| ! | ACTCTAACACTCTTTTATTG+GGG | + | chr4_1:70926262-70926281 | None:intergenic | 30.0% |
| ! | CACTCTAACACTCTTTTATT+GGG | + | chr4_1:70926263-70926282 | None:intergenic | 30.0% |
| ! | TCACTCTAACACTCTTTTAT+TGG | + | chr4_1:70926264-70926283 | None:intergenic | 30.0% |
| !!! | CTGTTTTTGTTTATTGCAGA+TGG | - | chr4_1:70926485-70926504 | Msa0569090:intron | 30.0% |
| GAATCATAGCATGAAATGAA+AGG | + | chr4_1:70926860-70926879 | None:intergenic | 30.0% | |
| !! | CTTCTAGAACAATGTAGAAA+AGG | + | chr4_1:70926908-70926927 | None:intergenic | 30.0% |
| !! | TGTTCTAGAAGAAAATGTCT+TGG | - | chr4_1:70926917-70926936 | Msa0569090:intron | 30.0% |
| AGAACATAAAGCTGATGATA+TGG | - | chr4_1:70927196-70927215 | Msa0569090:CDS | 30.0% | |
| TATGGTCATTGAAGAAGTTA+CGG | - | chr4_1:70927214-70927233 | Msa0569090:intron | 30.0% | |
| TATTAGGAAAAATGAAGCAG+AGG | - | chr4_1:70927241-70927260 | Msa0569090:intron | 30.0% | |
| AGATAAACCACAATCAACTT+CGG | - | chr4_1:70927460-70927479 | Msa0569090:intron | 30.0% | |
| AATCATGGATCAATTGCAAT+AGG | + | chr4_1:70927584-70927603 | None:intergenic | 30.0% | |
| CAGAATATGTAAACCAAAAC+AGG | + | chr4_1:70927698-70927717 | None:intergenic | 30.0% | |
| AAACCTATGACTAAAACAAG+AGG | + | chr4_1:70927793-70927812 | None:intergenic | 30.0% | |
| AAACTGTCATTGCCTTATAT+TGG | - | chr4_1:70927831-70927850 | Msa0569090:five_prime_UTR | 30.0% | |
| GGAAAGAAAGAAAGGGAATT+TGG | + | chr4_1:70922493-70922512 | None:intergenic | 35.0% | |
| AGGTAAGGGAAAGAAAGAAA+GGG | + | chr4_1:70922500-70922519 | None:intergenic | 35.0% | |
| GAAATCTAGAAACTGAGGTA+AGG | + | chr4_1:70922515-70922534 | None:intergenic | 35.0% | |
| GATCGAAGATCGAAAATGAA+AGG | - | chr4_1:70922582-70922601 | Msa0569090:three_prime_UTR | 35.0% | |
| ATCGAAAATGAAAGGTGGAA+CGG | - | chr4_1:70922590-70922609 | Msa0569090:three_prime_UTR | 35.0% | |
| ! | TAATTGAATGATGGGAGTGA+AGG | + | chr4_1:70922729-70922748 | None:intergenic | 35.0% |
| TTATGGTCAGTTAAACCTTC+TGG | - | chr4_1:70922819-70922838 | Msa0569090:CDS | 35.0% | |
| TCTTAAGAACCTTCCATGTT+TGG | + | chr4_1:70923225-70923244 | None:intergenic | 35.0% | |
| GGAAGGTTCTTAAGATGTTA+CGG | - | chr4_1:70923230-70923249 | Msa0569090:CDS | 35.0% | |
| ATGCAAATAAGTGGTCATCA+AGG | + | chr4_1:70923275-70923294 | None:intergenic | 35.0% | |
| ATAAGAACTTGAAATGTGGC+AGG | - | chr4_1:70923566-70923585 | Msa0569090:CDS | 35.0% | |
| CACATTTCAAACAAGCTGTA+AGG | - | chr4_1:70923633-70923652 | Msa0569090:CDS | 35.0% | |
| ! | GTTTTACTGCATCAATTAGC+TGG | - | chr4_1:70923867-70923886 | Msa0569090:CDS | 35.0% |
| CTGAATTAGATCTCATGTCA+AGG | - | chr4_1:70923907-70923926 | Msa0569090:intron | 35.0% | |
| ATCTCATGTCAAGGACATTA+TGG | - | chr4_1:70923916-70923935 | Msa0569090:intron | 35.0% | |
| !! | GATGGTGGATATATCATATC+CGG | - | chr4_1:70923956-70923975 | Msa0569090:intron | 35.0% |
| GCAAGAATTATCAACTGATC+CGG | + | chr4_1:70923978-70923997 | None:intergenic | 35.0% | |
| TTCTGAACATGCTTTAACAG+TGG | - | chr4_1:70924043-70924062 | Msa0569090:intron | 35.0% | |
| !! | ATTGTAGTTCTGAACAAGCT+TGG | - | chr4_1:70924069-70924088 | Msa0569090:intron | 35.0% |
| ! | AGGTTAGTTCCTGACATAAA+TGG | + | chr4_1:70924118-70924137 | None:intergenic | 35.0% |
| GAAGCAATATACTTCCCTAA+AGG | + | chr4_1:70924190-70924209 | None:intergenic | 35.0% | |
| AGTAAGCCCCATAAATCAAA+GGG | - | chr4_1:70924244-70924263 | Msa0569090:intron | 35.0% | |
| ! | TCAACACCCTTTGATTTATG+GGG | + | chr4_1:70924253-70924272 | None:intergenic | 35.0% |
| ! | CTCAACACCCTTTGATTTAT+GGG | + | chr4_1:70924254-70924273 | None:intergenic | 35.0% |
| ! | TCTCAACACCCTTTGATTTA+TGG | + | chr4_1:70924255-70924274 | None:intergenic | 35.0% |
| ! | GTATTTGATTTCGCTGTAGA+TGG | - | chr4_1:70924363-70924382 | Msa0569090:intron | 35.0% |
| ACAAGTAGAAATGAACCATC+TGG | + | chr4_1:70924498-70924517 | None:intergenic | 35.0% | |
| TATTGCAATTTGGTAGAACC+TGG | - | chr4_1:70924598-70924617 | Msa0569090:intron | 35.0% | |
| GCTTAAAGCTCTTAAAACTG+TGG | - | chr4_1:70924665-70924684 | Msa0569090:intron | 35.0% | |
| ! | GTTAGGAGTTCTAATAACTC+GGG | + | chr4_1:70924713-70924732 | None:intergenic | 35.0% |
| ! | GGTTAGGAGTTCTAATAACT+CGG | + | chr4_1:70924714-70924733 | None:intergenic | 35.0% |
| ! | AGTGAGTAAAGCATTCAGTT+AGG | + | chr4_1:70924751-70924770 | None:intergenic | 35.0% |
| TGACAATATTCTGTTAGGAG+GGG | + | chr4_1:70924803-70924822 | None:intergenic | 35.0% | |
| GTGACAATATTCTGTTAGGA+GGG | + | chr4_1:70924804-70924823 | None:intergenic | 35.0% | |
| TGTGACAATATTCTGTTAGG+AGG | + | chr4_1:70924805-70924824 | None:intergenic | 35.0% | |
| GACTGTGACAATATTCTGTT+AGG | + | chr4_1:70924808-70924827 | None:intergenic | 35.0% | |
| TCACAGTCATCACATCAATT+GGG | - | chr4_1:70924820-70924839 | Msa0569090:intron | 35.0% | |
| AGTTCACTAAACAACAAAGG+GGG | + | chr4_1:70925035-70925054 | None:intergenic | 35.0% | |
| CAGTTCACTAAACAACAAAG+GGG | + | chr4_1:70925036-70925055 | None:intergenic | 35.0% | |
| CACAGTTCACTAAACAACAA+AGG | + | chr4_1:70925038-70925057 | None:intergenic | 35.0% | |
| ACCAAAACTCTCGAATTTCT+GGG | - | chr4_1:70925920-70925939 | Msa0569090:CDS | 35.0% | |
| AGATCCACTCCTAATATAGT+GGG | - | chr4_1:70926220-70926239 | Msa0569090:CDS | 35.0% | |
| TATTGGGGTAAAACTCATGT+AGG | + | chr4_1:70926247-70926266 | None:intergenic | 35.0% | |
| !! | AAGAGTGTTAGAGTGAGTAT+TGG | - | chr4_1:70926268-70926287 | Msa0569090:intron | 35.0% |
| !! | AAACGAATCATCGACTTGAT+CGG | + | chr4_1:70926377-70926396 | None:intergenic | 35.0% |
| TCTCCAATAGCAATATTTGC+TGG | - | chr4_1:70926587-70926606 | Msa0569090:intron | 35.0% | |
| TACCAGGTAATATCTGTTAC+TGG | + | chr4_1:70926626-70926645 | None:intergenic | 35.0% | |
| TAGCCGTTATAACATTTACC+AGG | + | chr4_1:70926642-70926661 | None:intergenic | 35.0% | |
| GTAGTCCGTATTTGTTCAAA+AGG | - | chr4_1:70926721-70926740 | Msa0569090:intron | 35.0% | |
| ! | GGTGACCTTTTGAACAAATA+CGG | + | chr4_1:70926729-70926748 | None:intergenic | 35.0% |
| !! | AATGCTAAATAATGGGCATC+AGG | + | chr4_1:70926750-70926769 | None:intergenic | 35.0% |
| CGAGGAGAATGCTAAATAAT+GGG | + | chr4_1:70926757-70926776 | None:intergenic | 35.0% | |
| TGCTTACTTGATAAGCAGTA+AGG | + | chr4_1:70926831-70926850 | None:intergenic | 35.0% | |
| ! | CTATGATTCTAACTTGTACC+AGG | - | chr4_1:70926871-70926890 | Msa0569090:intron | 35.0% |
| GAAAAGGGAAATCAAAAACC+TGG | + | chr4_1:70926892-70926911 | None:intergenic | 35.0% | |
| TCTAGAAGAAAATGTCTTGG+AGG | - | chr4_1:70926920-70926939 | Msa0569090:intron | 35.0% | |
| ! | TGTAGCAGAAAGCATGAAAA+TGG | - | chr4_1:70927007-70927026 | Msa0569090:intron | 35.0% |
| ! | AGAAAGCATGAAAATGGAAG+TGG | - | chr4_1:70927013-70927032 | Msa0569090:intron | 35.0% |
| GAAAATGGAAGTGGAAGAAA+AGG | - | chr4_1:70927022-70927041 | Msa0569090:intron | 35.0% | |
| ACGTGATCATCAAATCAACT+GGG | - | chr4_1:70927132-70927151 | Msa0569090:intron | 35.0% | |
| ATCAAATCAACTGGGAATGT+TGG | - | chr4_1:70927140-70927159 | Msa0569090:intron | 35.0% | |
| GTGCAATTATAGCTGACAAT+AGG | - | chr4_1:70927162-70927181 | Msa0569090:CDS | 35.0% | |
| AAGAAGTTACGGCAGATATT+AGG | - | chr4_1:70927225-70927244 | Msa0569090:intron | 35.0% | |
| ACATGATCATTGAGACAACT+AGG | - | chr4_1:70927276-70927295 | Msa0569090:intron | 35.0% | |
| ACAACTAGGACTGCAAATAT+TGG | - | chr4_1:70927290-70927309 | Msa0569090:intron | 35.0% | |
| !! | CGGTTTATTTTCTGTGTCTT+CGG | + | chr4_1:70927342-70927361 | None:intergenic | 35.0% |
| ACAGAAAATAAACCGCTTAG+TGG | - | chr4_1:70927347-70927366 | Msa0569090:intron | 35.0% | |
| AATAAACCGCTTAGTGGTTT+AGG | - | chr4_1:70927353-70927372 | Msa0569090:intron | 35.0% | |
| GGTTTAGGCAGTATTAATTC+TGG | - | chr4_1:70927368-70927387 | Msa0569090:intron | 35.0% | |
| ! | TCTCTGGCATTGAAAAATCA+TGG | + | chr4_1:70927599-70927618 | None:intergenic | 35.0% |
| ACTAAAACAAGAGGTCCAAA+AGG | + | chr4_1:70927784-70927803 | None:intergenic | 35.0% | |
| !! | AGTTTGCTAACTAGGAAAGT+TGG | + | chr4_1:70927816-70927835 | None:intergenic | 35.0% |
| GAGGTAAGGGAAAGAAAGAA+AGG | + | chr4_1:70922501-70922520 | None:intergenic | 40.0% | |
| CGAAGATCGAAAATGAAAGG+TGG | - | chr4_1:70922585-70922604 | Msa0569090:three_prime_UTR | 40.0% | |
| GTGGAACGGTTCAGATTAAT+TGG | - | chr4_1:70922604-70922623 | Msa0569090:three_prime_UTR | 40.0% | |
| GAGTACCTTGATGTCGAAAT+CGG | + | chr4_1:70922697-70922716 | None:intergenic | 40.0% | |
| ! | AGCTTCTTTTGTGATCCAGA+AGG | + | chr4_1:70922837-70922856 | None:intergenic | 40.0% |
| GTTATTCGCTTCTCTTCTTC+CGG | - | chr4_1:70922909-70922928 | Msa0569090:CDS | 40.0% | |
| !! | TTGTTAGCTTCTGGTTCTGA+TGG | - | chr4_1:70923046-70923065 | Msa0569090:CDS | 40.0% |
| AAGCTACATTCAACGGATAC+CGG | - | chr4_1:70923199-70923218 | Msa0569090:CDS | 40.0% | |
| !! | AAGTTGTTTTGCACGAACCT+AGG | + | chr4_1:70923534-70923553 | None:intergenic | 40.0% |
| !! | TGTGGCAGGTTTTGTGAATT+TGG | - | chr4_1:70923580-70923599 | Msa0569090:CDS | 40.0% |
| !! | GCAGGTTTTGTGAATTTGGT+TGG | - | chr4_1:70923584-70923603 | Msa0569090:CDS | 40.0% |
| AACAAGCTGTAAGGTTTCCT+TGG | - | chr4_1:70923642-70923661 | Msa0569090:intron | 40.0% | |
| GCACTTGTTCCATTTATGTC+AGG | - | chr4_1:70924106-70924125 | Msa0569090:intron | 40.0% | |
| !! | TTGCTTCTCTTAGTTCTGAC+CGG | - | chr4_1:70924203-70924222 | Msa0569090:intron | 40.0% |
| TGATGTAAATTCGGCAAGTC+CGG | + | chr4_1:70924225-70924244 | None:intergenic | 40.0% | |
| GGGGCTTACTGATGTAAATT+CGG | + | chr4_1:70924234-70924253 | None:intergenic | 40.0% | |
| CAGTAAGCCCCATAAATCAA+AGG | - | chr4_1:70924243-70924262 | Msa0569090:intron | 40.0% | |
| TTGTCACATACACTGACATC+AGG | - | chr4_1:70924387-70924406 | Msa0569090:intron | 40.0% | |
| AAGAGGGCAATGTTTCATCA+TGG | + | chr4_1:70924452-70924471 | None:intergenic | 40.0% | |
| TTGGTAGAACCTGGAAAATC+AGG | - | chr4_1:70924607-70924626 | Msa0569090:intron | 40.0% | |
| ! | AGTTGTTTGCCTGATTTTCC+AGG | + | chr4_1:70924619-70924638 | None:intergenic | 40.0% |
| !! | AGTTAGGAGAAAGTACTCTC+TGG | + | chr4_1:70924735-70924754 | None:intergenic | 40.0% |
| GTCACAGTCATCACATCAAT+TGG | - | chr4_1:70924819-70924838 | Msa0569090:intron | 40.0% | |
| AGGATACTGAATTTGGGCTT+TGG | + | chr4_1:70924846-70924865 | None:intergenic | 40.0% | |
| AGCTAAGCAGGAATCCATAA+AGG | + | chr4_1:70925118-70925137 | None:intergenic | 40.0% | |
| ! | CTCACGTCACTAACATGTTT+TGG | + | chr4_1:70925380-70925399 | None:intergenic | 40.0% |
| AAGCTTAAGGGACCAAATTC+AGG | - | chr4_1:70925496-70925515 | Msa0569090:intron | 40.0% | |
| ACCATTCACTTTGAACCTCT+AGG | + | chr4_1:70925788-70925807 | None:intergenic | 40.0% | |
| GACCAAAACTCTCGAATTTC+TGG | - | chr4_1:70925919-70925938 | Msa0569090:CDS | 40.0% | |
| ! | TCCCAGAAATTCGAGAGTTT+TGG | + | chr4_1:70925924-70925943 | None:intergenic | 40.0% |
| !! | AACTCTCGAATTTCTGGGAT+AGG | - | chr4_1:70925925-70925944 | Msa0569090:CDS | 40.0% |
| AATCACTTCACAGTTATCGC+AGG | + | chr4_1:70926024-70926043 | None:intergenic | 40.0% | |
| !! | TTGGTGATCTCCCGTTTTAT+CGG | - | chr4_1:70926197-70926216 | Msa0569090:CDS | 40.0% |
| GAGATCCACTCCTAATATAG+TGG | - | chr4_1:70926219-70926238 | Msa0569090:CDS | 40.0% | |
| CATGTAGGTCCCACTATATT+AGG | + | chr4_1:70926232-70926251 | None:intergenic | 40.0% | |
| !! | AACGAATCATCGACTTGATC+GGG | + | chr4_1:70926376-70926395 | None:intergenic | 40.0% |
| TAAAGTTCTGCCTCTTTCAG+AGG | - | chr4_1:70926436-70926455 | Msa0569090:CDS | 40.0% | |
| !! | AACAGCATCATGCATCGATT+AGG | + | chr4_1:70926470-70926489 | None:intergenic | 40.0% |
| CGGCAAATACAATGCGATAT+GGG | + | chr4_1:70926523-70926542 | None:intergenic | 40.0% | |
| ACGGCAAATACAATGCGATA+TGG | + | chr4_1:70926524-70926543 | None:intergenic | 40.0% | |
| ATATCGCATTGTATTTGCCG+TGG | - | chr4_1:70926523-70926542 | Msa0569090:intron | 40.0% | |
| CAATGAATTCAATGTGGCCA+CGG | + | chr4_1:70926543-70926562 | None:intergenic | 40.0% | |
| AGGCCAGCAAATATTGCTAT+TGG | + | chr4_1:70926593-70926612 | None:intergenic | 40.0% | |
| CTCCAGTAACAGATATTACC+TGG | - | chr4_1:70926621-70926640 | Msa0569090:intron | 40.0% | |
| GCGAGGAGAATGCTAAATAA+TGG | + | chr4_1:70926758-70926777 | None:intergenic | 40.0% | |
| GAGTTCGAAAATGACGAACT+TGG | - | chr4_1:70926801-70926820 | Msa0569090:intron | 40.0% | |
| !! | GGAAGAAAAGGTTGATGACA+TGG | - | chr4_1:70927034-70927053 | Msa0569090:intron | 40.0% |
| !! | ATAGAAGCATCTGCGGATAT+TGG | - | chr4_1:70927059-70927078 | Msa0569090:intron | 40.0% |
| !! | TAGAAGCATCTGCGGATATT+GGG | - | chr4_1:70927060-70927079 | Msa0569090:intron | 40.0% |
| GACGTGATCATCAAATCAAC+TGG | - | chr4_1:70927131-70927150 | Msa0569090:intron | 40.0% | |
| GAAAAATGAAGCAGAGGAGA+AGG | - | chr4_1:70927247-70927266 | Msa0569090:intron | 40.0% | |
| ATACTGCCTAAACCACTAAG+CGG | + | chr4_1:70927362-70927381 | None:intergenic | 40.0% | |
| AAACAACCAGCTAATCCAGA+TGG | - | chr4_1:70927410-70927429 | Msa0569090:intron | 40.0% | |
| !! | TGTTTACCATCTGGATTAGC+TGG | + | chr4_1:70927419-70927438 | None:intergenic | 40.0% |
| ! | GCTTCACTTTGTTTACCATC+TGG | + | chr4_1:70927428-70927447 | None:intergenic | 40.0% |
| ACAAAGTGAAGCAGAAGAGA+AGG | - | chr4_1:70927436-70927455 | Msa0569090:intron | 40.0% | |
| TTCGGACAGCATAAAATCTG+AGG | - | chr4_1:70927478-70927497 | Msa0569090:CDS | 40.0% | |
| ACAAAAAAGATGTACACGGG+CGG | + | chr4_1:70927636-70927655 | None:intergenic | 40.0% | |
| CGCACAAAAAAGATGTACAC+GGG | + | chr4_1:70927639-70927658 | None:intergenic | 40.0% | |
| CCGCACAAAAAAGATGTACA+CGG | + | chr4_1:70927640-70927659 | None:intergenic | 40.0% | |
| !!! | CCGTGTACATCTTTTTTGTG+CGG | - | chr4_1:70927637-70927656 | Msa0569090:intron | 40.0% |
| AAAACAGGGAACAACAAGAG+GGG | + | chr4_1:70927683-70927702 | None:intergenic | 40.0% | |
| CAAAACAGGGAACAACAAGA+GGG | + | chr4_1:70927684-70927703 | None:intergenic | 40.0% | |
| !!! | GGACCTCTTGTTTTAGTCAT+AGG | - | chr4_1:70927787-70927806 | Msa0569090:exon | 40.0% |
| !! | GCAATGACAGTTTGCTAACT+AGG | + | chr4_1:70927824-70927843 | None:intergenic | 40.0% |
| TGTGCTGTCTTGCCAATATA+AGG | + | chr4_1:70927846-70927865 | None:intergenic | 40.0% | |
| ! | TCAGGGGAATTGTTAGCTTC+TGG | - | chr4_1:70923037-70923056 | Msa0569090:CDS | 45.0% |
| AAGAACCTTCCATGTTTGGC+CGG | + | chr4_1:70923221-70923240 | None:intergenic | 45.0% | |
| TGTCAAGGACATTATGGACC+TGG | - | chr4_1:70923922-70923941 | Msa0569090:intron | 45.0% | |
| AGGAACTAACCTTCAGACGT+TGG | - | chr4_1:70924126-70924145 | Msa0569090:intron | 45.0% | |
| TACCCATGCACACTATGTTC+AGG | - | chr4_1:70924150-70924169 | Msa0569090:intron | 45.0% | |
| ACCCATGCACACTATGTTCA+GGG | - | chr4_1:70924151-70924170 | Msa0569090:intron | 45.0% | |
| !! | AGATTAGCTTGGTCTCCAGA+TGG | - | chr4_1:70924480-70924499 | Msa0569090:intron | 45.0% |
| TCATTTCTACTTGTGCCTGC+AGG | - | chr4_1:70924504-70924523 | Msa0569090:intron | 45.0% | |
| !! | GGAGAAAGTACTCTCTGGTT+AGG | + | chr4_1:70924730-70924749 | None:intergenic | 45.0% |
| GGGGGAAATTAAAAGCTGTC+TGG | + | chr4_1:70925017-70925036 | None:intergenic | 45.0% | |
| CCATGTAGCAAAAGCTAAGC+AGG | + | chr4_1:70925130-70925149 | None:intergenic | 45.0% | |
| !! | CCTGCTTAGCTTTTGCTACA+TGG | - | chr4_1:70925127-70925146 | Msa0569090:intron | 45.0% |
| TTCACGTCTCTACCCATTTC+AGG | - | chr4_1:70925169-70925188 | Msa0569090:CDS | 45.0% | |
| TATAGCAGGCCTGCATATCA+AGG | + | chr4_1:70925419-70925438 | None:intergenic | 45.0% | |
| ACAACAGCTTTGCTTGCACA+CGG | + | chr4_1:70925448-70925467 | None:intergenic | 45.0% | |
| TGAATTGCTTGAGTGGGATG+TGG | - | chr4_1:70925577-70925596 | Msa0569090:intron | 45.0% | |
| CATCATGGACCAGTTTGACT+GGG | - | chr4_1:70925642-70925661 | Msa0569090:intron | 45.0% | |
| AAATAGGCATGCTGACGAAC+TGG | - | chr4_1:70925699-70925718 | Msa0569090:intron | 45.0% | |
| ! | ACTGGTTCATGTCACAAAGC+CGG | - | chr4_1:70925717-70925736 | Msa0569090:intron | 45.0% |
| GAGGTCTAACAATTCTTCGC+CGG | + | chr4_1:70925739-70925758 | None:intergenic | 45.0% | |
| GCCTAGAGGTTCAAAGTGAA+TGG | - | chr4_1:70925784-70925803 | Msa0569090:intron | 45.0% | |
| ATGGTCTGAACCAGTTAGAC+AGG | - | chr4_1:70925803-70925822 | Msa0569090:intron | 45.0% | |
| GTTATCGCAGGACAGAGAAT+GGG | + | chr4_1:70926012-70926031 | None:intergenic | 45.0% | |
| AGTTATCGCAGGACAGAGAA+TGG | + | chr4_1:70926013-70926032 | None:intergenic | 45.0% | |
| GAGTGGATCTCCGATAAAAC+GGG | + | chr4_1:70926210-70926229 | None:intergenic | 45.0% | |
| GGAGTGGATCTCCGATAAAA+CGG | + | chr4_1:70926211-70926230 | None:intergenic | 45.0% | |
| AGGTCCCACTATATTAGGAG+TGG | + | chr4_1:70926227-70926246 | None:intergenic | 45.0% | |
| !! | ACGAATCATCGACTTGATCG+GGG | + | chr4_1:70926375-70926394 | None:intergenic | 45.0% |
| CTGTTACTGGAGCATAGTGA+AGG | + | chr4_1:70926613-70926632 | None:intergenic | 45.0% | |
| TTAGCATTCTCCTCGCAAGA+TGG | - | chr4_1:70926762-70926781 | Msa0569090:intron | 45.0% | |
| GCAAGATGGTTTCTGCTCTT+TGG | - | chr4_1:70926776-70926795 | Msa0569090:intron | 45.0% | |
| AGATGGTTTCTGCTCTTTGG+TGG | - | chr4_1:70926779-70926798 | Msa0569090:intron | 45.0% | |
| ! | AGCATCATTGGCTGTCTGAA+GGG | + | chr4_1:70926958-70926977 | None:intergenic | 45.0% |
| AGTTGGCAGTACAGCATCAT+TGG | + | chr4_1:70926970-70926989 | None:intergenic | 45.0% | |
| AATGATGCTGTACTGCCAAC+TGG | - | chr4_1:70926969-70926988 | Msa0569090:intron | 45.0% | |
| ATGATGCTGTACTGCCAACT+GGG | - | chr4_1:70926970-70926989 | Msa0569090:intron | 45.0% | |
| !! | CATGGACATAGAAGCATCTG+CGG | - | chr4_1:70927052-70927071 | Msa0569090:intron | 45.0% |
| !! | AGAAGCATCTGCGGATATTG+GGG | - | chr4_1:70927061-70927080 | Msa0569090:intron | 45.0% |
| !! | TAATTCTGGAGCCGAAGAGA+AGG | - | chr4_1:70927382-70927401 | Msa0569090:intron | 45.0% |
| TTGTTTCGACGCCTTCTCTT+CGG | + | chr4_1:70927396-70927415 | None:intergenic | 45.0% | |
| ! | ATGCTGTCCGAAGTTGATTG+TGG | + | chr4_1:70927470-70927489 | None:intergenic | 45.0% |
| !! | CTGGCTGGCTTATTTGAGAT+GGG | + | chr4_1:70927548-70927567 | None:intergenic | 45.0% |
| AATAGGTGTAATGCGCTTCC+TGG | + | chr4_1:70927567-70927586 | None:intergenic | 45.0% | |
| AAACAGGGAACAACAAGAGG+GGG | + | chr4_1:70927682-70927701 | None:intergenic | 45.0% | |
| CCAAAACAGGGAACAACAAG+AGG | + | chr4_1:70927685-70927704 | None:intergenic | 45.0% | |
| !!! | CCTCTTGTTGTTCCCTGTTT+TGG | - | chr4_1:70927682-70927701 | Msa0569090:intron | 45.0% |
| GAAAGGGAATTTGGCGCTCT+TGG | + | chr4_1:70922484-70922503 | None:intergenic | 50.0% | |
| AGGACATTATGGACCTGGAG+TGG | - | chr4_1:70923927-70923946 | Msa0569090:intron | 50.0% | |
| CATGGGTATCCAACGTCTGA+AGG | + | chr4_1:70924138-70924157 | None:intergenic | 50.0% | |
| CCCCTGAACATAGTGTGCAT+GGG | + | chr4_1:70924155-70924174 | None:intergenic | 50.0% | |
| CCCATGCACACTATGTTCAG+GGG | - | chr4_1:70924152-70924171 | Msa0569090:intron | 50.0% | |
| CCATGCACACTATGTTCAGG+GGG | - | chr4_1:70924153-70924172 | Msa0569090:intron | 50.0% | |
| ATACTTCCCTAAAGGGTCCC+AGG | + | chr4_1:70924182-70924201 | None:intergenic | 50.0% | |
| CTGGTTAGGTGAATACCTGC+AGG | + | chr4_1:70924522-70924541 | None:intergenic | 50.0% | |
| TCACTGGAAAGTGGACGAAG+TGG | - | chr4_1:70924937-70924956 | Msa0569090:CDS | 50.0% | |
| CCAGTCAAACTGGTCCATGA+TGG | + | chr4_1:70925644-70925663 | None:intergenic | 50.0% | |
| CCATCATGGACCAGTTTGAC+TGG | - | chr4_1:70925641-70925660 | Msa0569090:intron | 50.0% | |
| GATTGTTAGAGGCAGCCTAG+AGG | - | chr4_1:70925770-70925789 | Msa0569090:intron | 50.0% | |
| AGTGCTAGCAACACTCACTC+TGG | - | chr4_1:70926117-70926136 | Msa0569090:CDS | 50.0% | |
| !! | ATCGACTTGATCGGGGTACA+AGG | + | chr4_1:70926368-70926387 | None:intergenic | 50.0% |
| ! | GGCAATGCATCCTCTGAAAG+AGG | + | chr4_1:70926449-70926468 | None:intergenic | 50.0% |
| AGAGCAGAAACCATCTTGCG+AGG | + | chr4_1:70926775-70926794 | None:intergenic | 50.0% | |
| ! | CAGCATCATTGGCTGTCTGA+AGG | + | chr4_1:70926959-70926978 | None:intergenic | 50.0% |
| ! | TCTGAGGCAGCACAAAAGAC+AGG | - | chr4_1:70927494-70927513 | Msa0569090:CDS | 50.0% |
| CTGAGGCAGCACAAAAGACA+GGG | - | chr4_1:70927495-70927514 | Msa0569090:CDS | 50.0% | |
| !! | CCTGGCTGGCTTATTTGAGA+TGG | + | chr4_1:70927549-70927568 | None:intergenic | 50.0% |
| CCATCTCAAATAAGCCAGCC+AGG | - | chr4_1:70927546-70927565 | Msa0569090:CDS | 50.0% | |
| GGACGTTAATGGAGCTTCTC+TGG | + | chr4_1:70927615-70927634 | None:intergenic | 50.0% | |
| ! | CAACAAGAGGGGGGATGTTT+TGG | + | chr4_1:70927672-70927691 | None:intergenic | 50.0% |
| AACAGGGAACAACAAGAGGG+GGG | + | chr4_1:70927681-70927700 | None:intergenic | 50.0% | |
| CTTGATGTCGAAATCGGCGC+CGG | + | chr4_1:70922691-70922710 | None:intergenic | 55.0% | |
| CAACGGATACCGGCCAAACA+TGG | - | chr4_1:70923209-70923228 | Msa0569090:CDS | 55.0% | |
| GGATACCGGCCAAACATGGA+AGG | - | chr4_1:70923213-70923232 | Msa0569090:CDS | 55.0% | |
| GACCTGGAGTGGTCTACTGA+TGG | - | chr4_1:70923938-70923957 | Msa0569090:intron | 55.0% | |
| CACCATCAGTAGACCACTCC+AGG | + | chr4_1:70923943-70923962 | None:intergenic | 55.0% | |
| CTGGAGTGGTCTACTGATGG+TGG | - | chr4_1:70923941-70923960 | Msa0569090:intron | 55.0% | |
| CCCCCTGAACATAGTGTGCA+TGG | + | chr4_1:70924156-70924175 | None:intergenic | 55.0% | |
| ACTATGTTCAGGGGGTAGCC+TGG | - | chr4_1:70924161-70924180 | Msa0569090:intron | 55.0% | |
| CTATGTTCAGGGGGTAGCCT+GGG | - | chr4_1:70924162-70924181 | Msa0569090:intron | 55.0% | |
| GCACACGGAAGCTGTATAGC+AGG | + | chr4_1:70925433-70925452 | None:intergenic | 55.0% | |
| TGTCCAGCTCCCAGTCAAAC+TGG | + | chr4_1:70925654-70925673 | None:intergenic | 55.0% | |
| ! | GTACTGCCAACTGGGAGTGT+TGG | - | chr4_1:70926978-70926997 | Msa0569090:intron | 55.0% |
| ACTGCACCAACACTCCCAGT+TGG | + | chr4_1:70926987-70927006 | None:intergenic | 55.0% | |
| GATGGGCGTGCTCTTTGAAC+TGG | + | chr4_1:70927531-70927550 | None:intergenic | 55.0% | |
| TGTACACGGGCGGACGTTAA+TGG | + | chr4_1:70927626-70927645 | None:intergenic | 55.0% | |
| !! | CGGCGCCGATTTCGACATCA+AGG | - | chr4_1:70922689-70922708 | Msa0569090:three_prime_UTR | 60.0% |
| GGGTAGCCTGGGACCCTTTA+GGG | - | chr4_1:70924173-70924192 | Msa0569090:intron | 60.0% | |
| GGACCAGTTTGACTGGGAGC+TGG | - | chr4_1:70925648-70925667 | Msa0569090:intron | 60.0% | |
| CTGGGAGCTGGACACATGTC+TGG | - | chr4_1:70925660-70925679 | Msa0569090:intron | 60.0% | |
| GGTGTAATGCGCTTCCTGGC+TGG | + | chr4_1:70927563-70927582 | None:intergenic | 60.0% | |
| GTGGCGAGAGTGGAGGAGAG+AGG | + | chr4_1:70922666-70922685 | None:intergenic | 65.0% | |
| ! | GATGTCGAAATCGGCGCCGG+CGG | + | chr4_1:70922688-70922707 | None:intergenic | 65.0% |
| GGGGTAGCCTGGGACCCTTT+AGG | - | chr4_1:70924172-70924191 | Msa0569090:intron | 65.0% | |
| TCCTCCACTCTCGCCACCGC+CGG | - | chr4_1:70922669-70922688 | Msa0569090:three_prime_UTR | 70.0% | |
| !! | GTCGAAATCGGCGCCGGCGG+TGG | + | chr4_1:70922685-70922704 | None:intergenic | 75.0% |
| ! | GCCGGCGGTGGCGAGAGTGG+AGG | + | chr4_1:70922673-70922692 | None:intergenic | 80.0% |
| !!! | GGCGCCGGCGGTGGCGAGAG+TGG | + | chr4_1:70922676-70922695 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 70922480 | 70927921 | 70922480 | ID=Msa0569090;Name=Msa0569090 |
| chr4_1 | mRNA | 70922480 | 70927921 | 70922480 | ID=Msa0569090-mRNA-1;Parent=Msa0569090;Name=Msa0569090-mRNA-1;_AED=0.18;_eAED=0.18;_QI=117|1|1|1|1|0.91|12|320|605 |
| chr4_1 | exon | 70922480 | 70923476 | 70922480 | ID=Msa0569090-mRNA-1:exon:23965;Parent=Msa0569090-mRNA-1 |
| chr4_1 | exon | 70923558 | 70923658 | 70923558 | ID=Msa0569090-mRNA-1:exon:23964;Parent=Msa0569090-mRNA-1 |
| chr4_1 | exon | 70923759 | 70923897 | 70923759 | ID=Msa0569090-mRNA-1:exon:23963;Parent=Msa0569090-mRNA-1 |
| chr4_1 | exon | 70924884 | 70924972 | 70924884 | ID=Msa0569090-mRNA-1:exon:23962;Parent=Msa0569090-mRNA-1 |
| chr4_1 | exon | 70925138 | 70925210 | 70925138 | ID=Msa0569090-mRNA-1:exon:23961;Parent=Msa0569090-mRNA-1 |
| chr4_1 | exon | 70925876 | 70925972 | 70925876 | ID=Msa0569090-mRNA-1:exon:23960;Parent=Msa0569090-mRNA-1 |
| chr4_1 | exon | 70926062 | 70926273 | 70926062 | ID=Msa0569090-mRNA-1:exon:23959;Parent=Msa0569090-mRNA-1 |
| chr4_1 | exon | 70926382 | 70926485 | 70926382 | ID=Msa0569090-mRNA-1:exon:23958;Parent=Msa0569090-mRNA-1 |
| chr4_1 | exon | 70927150 | 70927222 | 70927150 | ID=Msa0569090-mRNA-1:exon:23957;Parent=Msa0569090-mRNA-1 |
| chr4_1 | exon | 70927334 | 70927360 | 70927334 | ID=Msa0569090-mRNA-1:exon:23956;Parent=Msa0569090-mRNA-1 |
| chr4_1 | exon | 70927471 | 70927582 | 70927471 | ID=Msa0569090-mRNA-1:exon:23955;Parent=Msa0569090-mRNA-1 |
| chr4_1 | exon | 70927691 | 70927921 | 70927691 | ID=Msa0569090-mRNA-1:exon:23954;Parent=Msa0569090-mRNA-1 |
| chr4_1 | five_prime_UTR | 70927805 | 70927921 | 70927805 | ID=Msa0569090-mRNA-1:five_prime_utr;Parent=Msa0569090-mRNA-1 |
| chr4_1 | CDS | 70927691 | 70927804 | 70927691 | ID=Msa0569090-mRNA-1:cds;Parent=Msa0569090-mRNA-1 |
| chr4_1 | CDS | 70927471 | 70927582 | 70927471 | ID=Msa0569090-mRNA-1:cds;Parent=Msa0569090-mRNA-1 |
| chr4_1 | CDS | 70927334 | 70927360 | 70927334 | ID=Msa0569090-mRNA-1:cds;Parent=Msa0569090-mRNA-1 |
| chr4_1 | CDS | 70927150 | 70927222 | 70927150 | ID=Msa0569090-mRNA-1:cds;Parent=Msa0569090-mRNA-1 |
| chr4_1 | CDS | 70926382 | 70926485 | 70926382 | ID=Msa0569090-mRNA-1:cds;Parent=Msa0569090-mRNA-1 |
| chr4_1 | CDS | 70926062 | 70926273 | 70926062 | ID=Msa0569090-mRNA-1:cds;Parent=Msa0569090-mRNA-1 |
| chr4_1 | CDS | 70925876 | 70925972 | 70925876 | ID=Msa0569090-mRNA-1:cds;Parent=Msa0569090-mRNA-1 |
| chr4_1 | CDS | 70925138 | 70925210 | 70925138 | ID=Msa0569090-mRNA-1:cds;Parent=Msa0569090-mRNA-1 |
| chr4_1 | CDS | 70924884 | 70924972 | 70924884 | ID=Msa0569090-mRNA-1:cds;Parent=Msa0569090-mRNA-1 |
| chr4_1 | CDS | 70923759 | 70923897 | 70923759 | ID=Msa0569090-mRNA-1:cds;Parent=Msa0569090-mRNA-1 |
| chr4_1 | CDS | 70923558 | 70923658 | 70923558 | ID=Msa0569090-mRNA-1:cds;Parent=Msa0569090-mRNA-1 |
| chr4_1 | CDS | 70922800 | 70923476 | 70922800 | ID=Msa0569090-mRNA-1:cds;Parent=Msa0569090-mRNA-1 |
| chr4_1 | three_prime_UTR | 70922480 | 70922799 | 70922480 | ID=Msa0569090-mRNA-1:three_prime_utr;Parent=Msa0569090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
