Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0614490 | XP_013457203.1 | 98.448 | 451 | 6 | 1 | 1 | 450 | 1 | 451 | 0.0 | 915 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0614490 | sp|P44176|RNAAM_HAEIN | 35.878 | 262 | 140 | 8 | 83 | 333 | 5 | 249 | 2.92e-31 | 124 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0027580 | Msa0614490 | 0.800794 | 1.219236e-48 | -8.615850e-47 |
| Msa0030310 | Msa0614490 | 0.821257 | 4.444360e-53 | -8.615850e-47 |
| Msa0073670 | Msa0614490 | 0.803038 | 4.217292e-49 | -8.615850e-47 |
| Msa0075340 | Msa0614490 | 0.800353 | 1.499531e-48 | -8.615850e-47 |
| Msa0082280 | Msa0614490 | 0.813734 | 2.203301e-51 | -8.615850e-47 |
| Msa0094950 | Msa0614490 | 0.804417 | 2.182394e-49 | -8.615850e-47 |
| Msa0614490 | Msa0638690 | 0.834277 | 3.289676e-56 | -8.615850e-47 |
| Msa0614490 | Msa0639120 | 0.952387 | 2.700444e-110 | -8.615850e-47 |
| Msa0614490 | Msa0663900 | 0.801330 | 9.475673e-49 | -8.615850e-47 |
| Msa0614490 | Msa0664960 | 0.800729 | 1.257343e-48 | -8.615850e-47 |
| Msa0614490 | Msa0687630 | 0.835647 | 1.485534e-56 | -8.615850e-47 |
| Msa0614490 | Msa0697690 | 0.867750 | 1.086792e-65 | -8.615850e-47 |
| Msa0614490 | Msa0705040 | 0.800566 | 1.357033e-48 | -8.615850e-47 |
| Msa0614490 | Msa0707390 | 0.813544 | 2.426202e-51 | -8.615850e-47 |
| Msa0614490 | Msa0711490 | 0.803705 | 3.068930e-49 | -8.615850e-47 |
| Msa0614490 | Msa0713460 | 0.802862 | 4.586142e-49 | -8.615850e-47 |
| Msa0614490 | Msa0787750 | 0.801972 | 6.995654e-49 | -8.615850e-47 |
| Msa0614490 | Msa0797120 | 0.835681 | 1.456371e-56 | -8.615850e-47 |
| Msa0614490 | Msa0814250 | 0.800815 | 1.207284e-48 | -8.615850e-47 |
| Msa0614490 | Msa0824730 | 0.803143 | 4.012250e-49 | -8.615850e-47 |
| Msa0614490 | Msa0846030 | 0.814325 | 1.632066e-51 | -8.615850e-47 |
| Msa0614490 | Msa0852730 | 0.801389 | 9.213122e-49 | -8.615850e-47 |
| Msa0614490 | Msa0942730 | 0.802445 | 5.592512e-49 | -8.615850e-47 |
| Msa0614490 | Msa0959840 | 0.800181 | 1.625971e-48 | -8.615850e-47 |
| Msa0614490 | Msa0966720 | -0.804778 | 1.834734e-49 | -8.615850e-47 |
| Msa0614490 | Msa0976330 | 0.820744 | 5.835485e-53 | -8.615850e-47 |
| Msa0614490 | Msa0993530 | 0.802028 | 6.811662e-49 | -8.615850e-47 |
| Msa0614490 | Msa1070050 | 0.805268 | 1.449094e-49 | -8.615850e-47 |
| Msa0614490 | Msa1073400 | 0.804788 | 1.825865e-49 | -8.615850e-47 |
| Msa0614490 | Msa1126770 | 0.804392 | 2.208266e-49 | -8.615850e-47 |
| Msa0614490 | Msa1150970 | 0.814238 | 1.705961e-51 | -8.615850e-47 |
| Msa0614490 | Msa1184370 | 0.813212 | 2.869402e-51 | -8.615850e-47 |
| Msa0614490 | Msa1201830 | 0.826521 | 2.592554e-54 | -8.615850e-47 |
| Msa0614490 | Msa1227690 | 0.808748 | 2.659598e-50 | -8.615850e-47 |
| Msa0614490 | Msa1235630 | 0.803294 | 3.732965e-49 | -8.615850e-47 |
| Msa0614490 | Msa1294840 | 0.821082 | 4.878515e-53 | -8.615850e-47 |
| Msa0614490 | Msa1299360 | 0.819093 | 1.391427e-52 | -8.615850e-47 |
| Msa0614490 | Msa1310690 | 0.805435 | 1.336613e-49 | -8.615850e-47 |
| Msa0614490 | Msa1315870 | 0.804774 | 1.837847e-49 | -8.615850e-47 |
| Msa0614490 | Msa1344850 | 0.823906 | 1.076002e-53 | -8.615850e-47 |
| Msa0614490 | Msa1358430 | 0.802425 | 5.644235e-49 | -8.615850e-47 |
| Msa0614490 | Msa1365150 | 0.856707 | 2.680971e-62 | -8.615850e-47 |
| Msa0614490 | Msa1367880 | 0.841518 | 4.525607e-58 | -8.615850e-47 |
| Msa0614490 | Msa1370860 | 0.818713 | 1.698357e-52 | -8.615850e-47 |
| Msa0614490 | Msa1382310 | 0.804610 | 1.988567e-49 | -8.615850e-47 |
| Msa0614490 | Msa1387190 | 0.809912 | 1.496564e-50 | -8.615850e-47 |
| Msa0614490 | Msa1390310 | 0.802353 | 5.839737e-49 | -8.615850e-47 |
| Msa0614490 | Msa1397050 | 0.803014 | 4.267407e-49 | -8.615850e-47 |
| Msa0614490 | Msa1397940 | 0.810927 | 9.036110e-51 | -8.615850e-47 |
| Msa0614490 | Msa1404190 | 0.826362 | 2.827560e-54 | -8.615850e-47 |
| Msa0614490 | Msa1416390 | 0.810872 | 9.285231e-51 | -8.615850e-47 |
| Msa0614490 | Msa1438640 | 0.855067 | 8.090135e-62 | -8.615850e-47 |
| Msa0614490 | Msa1442850 | 0.803531 | 3.335199e-49 | -8.615850e-47 |
| Msa0614490 | Msa1465080 | 0.809078 | 2.260550e-50 | -8.615850e-47 |
| Msa0143080 | Msa0614490 | 0.802405 | 5.699470e-49 | -8.615850e-47 |
| Msa0174770 | Msa0614490 | 0.831025 | 2.108885e-55 | -8.615850e-47 |
| Msa0224150 | Msa0614490 | 0.825038 | 5.829677e-54 | -8.615850e-47 |
| Msa0236980 | Msa0614490 | 0.802591 | 5.216909e-49 | -8.615850e-47 |
| Msa0388720 | Msa0614490 | 0.806842 | 6.758634e-50 | -8.615850e-47 |
| Msa0394400 | Msa0614490 | 0.811018 | 8.634386e-51 | -8.615850e-47 |
| Msa0413450 | Msa0614490 | 0.808924 | 2.438005e-50 | -8.615850e-47 |
| Msa0463500 | Msa0614490 | 0.808635 | 2.811901e-50 | -8.615850e-47 |
| Msa0469910 | Msa0614490 | -0.831766 | 1.386176e-55 | -8.615850e-47 |
| Msa0239450 | Msa0614490 | 0.802986 | 4.324711e-49 | -8.615850e-47 |
| Msa0259560 | Msa0614490 | 0.841869 | 3.657769e-58 | -8.615850e-47 |
| Msa0260240 | Msa0614490 | 0.802367 | 5.801495e-49 | -8.615850e-47 |
| Msa0260280 | Msa0614490 | 0.805079 | 1.587275e-49 | -8.615850e-47 |
| Msa0291520 | Msa0614490 | 0.819799 | 9.604645e-53 | -8.615850e-47 |
| Msa0304260 | Msa0614490 | 0.802972 | 4.353190e-49 | -8.615850e-47 |
| Msa0328210 | Msa0614490 | 0.811434 | 7.015877e-51 | -8.615850e-47 |
| Msa0505150 | Msa0614490 | 0.843150 | 1.672116e-58 | -8.615850e-47 |
| Msa0513440 | Msa0614490 | 0.811933 | 5.464116e-51 | -8.615850e-47 |
| Msa0560470 | Msa0614490 | 0.915555 | 5.123938e-85 | -8.615850e-47 |
| Msa0576980 | Msa0614490 | 0.814490 | 1.500701e-51 | -8.615850e-47 |
| Msa0581070 | Msa0614490 | 0.809342 | 1.984294e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0614490 | MtrunA17_Chr4g0050521 | 98.448 | 451 | 6 | 1 | 1 | 450 | 1 | 451 | 0.0 | 915 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0614490 | AT2G13840.1 | 62.619 | 420 | 151 | 3 | 31 | 448 | 17 | 432 | 0.0 | 541 |
Find 121 sgRNAs with CRISPR-Local
Find 298 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATCTCTTGTTGATGATTT+TGG | 0.123021 | 4_2:-63550382 | Msa0614490:CDS |
| CAAACCTTGTAATTGTTTCT+AGG | 0.169257 | 4_2:+63547199 | None:intergenic |
| AACAAATTTAACAATAAAAT+TGG | 0.172762 | 4_2:+63546935 | None:intergenic |
| TTGATCATTGTTTACCTCTT+TGG | 0.224468 | 4_2:-63547122 | Msa0614490:CDS |
| CCTTACAGTGAAGGGATCTT+TGG | 0.253884 | 4_2:+63550739 | None:intergenic |
| AAAATCCTGTTGCTATTATT+AGG | 0.255436 | 4_2:-63548631 | Msa0614490:CDS |
| CACTTCCCAGTTCAGATTCA+TGG | 0.274753 | 4_2:+63547334 | None:intergenic |
| CCTCATTTCTCTTCATATAT+AGG | 0.280119 | 4_2:-63550703 | Msa0614490:five_prime_UTR |
| CTATATGGTGCAATGCTATA+AGG | 0.299389 | 4_2:-63547263 | Msa0614490:CDS |
| CAATGCTATAAGGGAATTAT+TGG | 0.306066 | 4_2:-63547253 | Msa0614490:CDS |
| GATGACCCATGAACAAGTTT+TGG | 0.306632 | 4_2:-63550461 | Msa0614490:CDS |
| CGGGCTACATGGAGCCTTCC+GGG | 0.310253 | 4_2:+63548908 | None:intergenic |
| GTAGAATCGGCTCGCAAATA+TGG | 0.314220 | 4_2:-63549628 | Msa0614490:CDS |
| AAAAGTGATGGAAGGCTTGC+AGG | 0.316738 | 4_2:-63548569 | Msa0614490:intron |
| TTAAGGTAGCTAGGCCTATA+TGG | 0.320672 | 4_2:-63547278 | Msa0614490:CDS |
| CTAGAAACAATTACAAGGTT+TGG | 0.330990 | 4_2:-63547198 | Msa0614490:CDS |
| TGTAACTGAATGGGTTTCAT+TGG | 0.360755 | 4_2:-63550428 | Msa0614490:CDS |
| TAAAAGCCAAAACTTGTTCA+TGG | 0.361148 | 4_2:+63550455 | None:intergenic |
| TAGAAACAATTACAAGGTTT+GGG | 0.368543 | 4_2:-63547197 | Msa0614490:CDS |
| TTCCAACGTTTCTACCTGTC+AGG | 0.373853 | 4_2:-63547046 | Msa0614490:CDS |
| TTGCCGTTCTGGCTCATCCA+TGG | 0.379810 | 4_2:-63548661 | Msa0614490:CDS |
| GAGCATGTTTGTAGGATTGC+AGG | 0.382471 | 4_2:-63548944 | Msa0614490:CDS |
| TTAGCATATTACAGCAGTAT+TGG | 0.401822 | 4_2:-63549082 | Msa0614490:CDS |
| AGGACACCATGAATCTGAAC+TGG | 0.403868 | 4_2:-63547340 | Msa0614490:CDS |
| GATGAAGTAGCGAAAGAAGA+AGG | 0.406465 | 4_2:+63550400 | None:intergenic |
| GCGATGCCATCTCCCATAAC+TGG | 0.407187 | 4_2:+63550571 | None:intergenic |
| AACCTCCTAATAATAGCAAC+AGG | 0.413958 | 4_2:+63548626 | None:intergenic |
| TAATATGCTAAAACGTGAAC+AGG | 0.417023 | 4_2:+63549094 | None:intergenic |
| AAGGGTGAGTGAGTTTGTTA+CGG | 0.421407 | 4_2:+63550665 | None:intergenic |
| TTAAATGGGAGCATGTTTGT+AGG | 0.422997 | 4_2:-63548952 | Msa0614490:CDS |
| CCAAAGATCCCTTCACTGTA+AGG | 0.423262 | 4_2:-63550739 | Msa0614490:five_prime_UTR |
| TTAAAAGAAGCAGGCCTTCA+TGG | 0.425114 | 4_2:-63548605 | Msa0614490:CDS |
| CTTATAGCATTGCACCATAT+AGG | 0.426022 | 4_2:+63547264 | None:intergenic |
| CAATTCAAACAAGAGCAATA+AGG | 0.426821 | 4_2:-63550533 | Msa0614490:CDS |
| GATGGAAAATGAAGAGTTTG+AGG | 0.430917 | 4_2:-63547085 | Msa0614490:CDS |
| ACGGGCTACATGGAGCCTTC+CGG | 0.436221 | 4_2:+63548907 | None:intergenic |
| CAAATCCTTTCCACAATACA+AGG | 0.438699 | 4_2:+63547146 | None:intergenic |
| GCTCTCTCAACAACCTTAGA+AGG | 0.441652 | 4_2:+63550274 | None:intergenic |
| TATATGGTGCAATGCTATAA+GGG | 0.441866 | 4_2:-63547262 | Msa0614490:CDS |
| TTCTAAGTCTCTATGAGAAC+CGG | 0.445315 | 4_2:+63547015 | None:intergenic |
| AAGTCATGCAAAACTAGTAC+TGG | 0.451309 | 4_2:+63547303 | None:intergenic |
| CAACCATAGCACGGGCTACA+TGG | 0.457224 | 4_2:+63548897 | None:intergenic |
| CGAGCCGATTCTACAGCCTC+GGG | 0.458504 | 4_2:+63549637 | None:intergenic |
| AGGGTGAGTGAGTTTGTTAC+GGG | 0.459051 | 4_2:+63550666 | None:intergenic |
| TCTGACAGATCACGATACTA+TGG | 0.460637 | 4_2:-63549668 | Msa0614490:CDS |
| TGCCGTTCTGGCTCATCCAT+GGG | 0.473635 | 4_2:-63548660 | Msa0614490:CDS |
| CATCCCCGAGGCTGTAGAAT+CGG | 0.477174 | 4_2:-63549641 | Msa0614490:CDS |
| ATGACTTTCTTAAGGTAGCT+AGG | 0.478259 | 4_2:-63547287 | Msa0614490:CDS |
| ATTAGGAGGTTAAAAGAAGC+AGG | 0.481000 | 4_2:-63548614 | Msa0614490:CDS |
| TTTATTGCTTCCTCCACCAC+AGG | 0.488429 | 4_2:+63548707 | None:intergenic |
| AACCGGAGTTCCTCCCTGAC+AGG | 0.503869 | 4_2:+63547032 | None:intergenic |
| AAAAGCCAAAACTTGTTCAT+GGG | 0.503915 | 4_2:+63550456 | None:intergenic |
| CTCAATCCAGTTATGGGAGA+TGG | 0.507134 | 4_2:-63550577 | Msa0614490:exon |
| TTGGTTAAGTAGCCAAGAGA+TGG | 0.514042 | 4_2:-63547103 | Msa0614490:CDS |
| TATTGGACCATCAAAATTTG+AGG | 0.515732 | 4_2:-63549065 | Msa0614490:CDS |
| GGGAAGTGAACCTGTGGTGG+AGG | 0.520171 | 4_2:-63548717 | Msa0614490:CDS |
| ATGAAGTAGCGAAAGAAGAA+GGG | 0.523100 | 4_2:+63550401 | None:intergenic |
| GAAGAGAAATGAGGAAGGGT+AGG | 0.523647 | 4_2:+63550712 | None:intergenic |
| TGTAGACCTCCATCCCATGA+AGG | 0.525586 | 4_2:+63548591 | None:intergenic |
| TAAAAGAAGCAGGCCTTCAT+GGG | 0.526089 | 4_2:-63548604 | Msa0614490:CDS |
| TTCACCCTTGTATTGTGGAA+AGG | 0.529199 | 4_2:-63547151 | Msa0614490:CDS |
| ATTGGAGGGTCAGACTATCA+TGG | 0.530154 | 4_2:-63547369 | Msa0614490:CDS |
| GCGAGCCGATTCTACAGCCT+CGG | 0.530385 | 4_2:+63549636 | None:intergenic |
| GTTGAGAGAGCTCACATCAA+TGG | 0.531062 | 4_2:-63550262 | Msa0614490:CDS |
| GCCCGTGCTATGGTTGAAGC+AGG | 0.533657 | 4_2:-63548890 | Msa0614490:CDS |
| GCTCCATGTAGCCCGTGCTA+TGG | 0.537065 | 4_2:-63548900 | Msa0614490:CDS |
| AACGTTGGAAAGCTTCAACT+TGG | 0.537287 | 4_2:+63547059 | None:intergenic |
| CTCTTCATATATAGGTTCAG+AGG | 0.537326 | 4_2:-63550695 | Msa0614490:five_prime_UTR |
| CAGGGGAAGTGAACCTGTGG+TGG | 0.538470 | 4_2:-63548720 | Msa0614490:CDS |
| AACAATAATATCAGAAACGT+TGG | 0.540630 | 4_2:+63546854 | None:intergenic |
| AGAAGCAGGCCTTCATGGGA+TGG | 0.546814 | 4_2:-63548600 | Msa0614490:CDS |
| GGAGGTTCACCCTTGTATTG+TGG | 0.547408 | 4_2:-63547156 | Msa0614490:CDS |
| TACCTGTCAGGGAGGAACTC+CGG | 0.547537 | 4_2:-63547034 | Msa0614490:CDS |
| AAGAAGAATAAGAACAGAGG+TGG | 0.548356 | 4_2:-63550496 | Msa0614490:CDS |
| CTAACCTAGAAACAATTACA+AGG | 0.549045 | 4_2:-63547203 | Msa0614490:CDS |
| GTTAGTATTAGACGGTTCCT+CGG | 0.549211 | 4_2:+63547221 | None:intergenic |
| ATCCTGTTGCTATTATTAGG+AGG | 0.550357 | 4_2:-63548628 | Msa0614490:CDS |
| GCAGGCAACGGAGTTGCTCC+CGG | 0.551611 | 4_2:-63548926 | Msa0614490:CDS |
| ATTGTACTAACTTCAACACC+TGG | 0.552254 | 4_2:+63549592 | None:intergenic |
| GTTTCTAGGTTAGTATTAGA+CGG | 0.556827 | 4_2:+63547213 | None:intergenic |
| CAATATTACTTGGAGTAAGC+AGG | 0.557337 | 4_2:+63548815 | None:intergenic |
| GAAGGGATCTTTGGAGTCAC+AGG | 0.559599 | 4_2:+63550748 | None:intergenic |
| GGGTCAGACTATCATGGAAG+AGG | 0.560598 | 4_2:-63547363 | Msa0614490:CDS |
| TCCAACGTTTCTACCTGTCA+GGG | 0.565665 | 4_2:-63547045 | Msa0614490:CDS |
| AAGAAGAAGAATAAGAACAG+AGG | 0.572930 | 4_2:-63550499 | Msa0614490:CDS |
| ATGGAGGTCTACAAAAGTGA+TGG | 0.578050 | 4_2:-63548581 | Msa0614490:CDS |
| ACCTGCTTCAACCATAGCAC+GGG | 0.581188 | 4_2:+63548889 | None:intergenic |
| AACCTGCTTCAACCATAGCA+CGG | 0.582016 | 4_2:+63548888 | None:intergenic |
| GTTTGTAGGATTGCAGGCAA+CGG | 0.584225 | 4_2:-63548938 | Msa0614490:CDS |
| TATGGCATTAAGATAATCCC+AGG | 0.585730 | 4_2:-63549610 | Msa0614490:CDS |
| CCTATATATGAAGAGAAATG+AGG | 0.589138 | 4_2:+63550703 | None:intergenic |
| AGTGACCTGGCTGATGCCTA+CGG | 0.590587 | 4_2:-63547402 | Msa0614490:CDS |
| CAAAGATCCCTTCACTGTAA+GGG | 0.590742 | 4_2:-63550738 | Msa0614490:five_prime_UTR |
| TGCCCATGGATGAGCCAGAA+CGG | 0.598033 | 4_2:+63548658 | None:intergenic |
| ACAGATCACGATACTATGGC+AGG | 0.600390 | 4_2:-63549664 | Msa0614490:CDS |
| GCAACGGAGTTGCTCCCGGA+AGG | 0.600663 | 4_2:-63548922 | Msa0614490:CDS |
| TAGGTTACCCTTACAGTGAA+GGG | 0.603982 | 4_2:+63550731 | None:intergenic |
| TGTCACTCTAAATGCAGTGA+TGG | 0.609923 | 4_2:-63550307 | Msa0614490:CDS |
| TCCCTGACAGGTAGAAACGT+TGG | 0.611368 | 4_2:+63547044 | None:intergenic |
| AAAGGCCGTAGGCATCAGCC+AGG | 0.611891 | 4_2:+63547397 | None:intergenic |
| GTAGGTTACCCTTACAGTGA+AGG | 0.613045 | 4_2:+63550730 | None:intergenic |
| TATATGAAGAGAAATGAGGA+AGG | 0.613178 | 4_2:+63550707 | None:intergenic |
| ATATGAAGAGAAATGAGGAA+GGG | 0.626865 | 4_2:+63550708 | None:intergenic |
| AGCAGGCCTTCATGGGATGG+AGG | 0.629146 | 4_2:-63548597 | Msa0614490:CDS |
| TCAGACTATCATGGAAGAGG+AGG | 0.633037 | 4_2:-63547360 | Msa0614490:CDS |
| TGGTGGAGACACTGAAGCAG+AGG | 0.633552 | 4_2:-63549119 | Msa0614490:CDS |
| CATGCAAAACTAGTACTGGA+AGG | 0.634426 | 4_2:+63547307 | None:intergenic |
| ATTATTGGAGTGTTATGCCG+AGG | 0.638655 | 4_2:-63547238 | Msa0614490:CDS |
| AGGTCTACAAAAGTGATGGA+AGG | 0.642912 | 4_2:-63548577 | Msa0614490:CDS |
| TTGTACTAACTTCAACACCT+GGG | 0.643477 | 4_2:+63549593 | None:intergenic |
| TCTTGGCTACTTAACCAAAG+AGG | 0.654559 | 4_2:+63547108 | None:intergenic |
| TTATCTTCGAGCAAAGAACA+TGG | 0.660434 | 4_2:-63549005 | Msa0614490:CDS |
| TTTCAGGGGAAGTGAACCTG+TGG | 0.661634 | 4_2:-63548723 | Msa0614490:intron |
| GTATGCAGCATATAGTGACC+TGG | 0.671490 | 4_2:-63547415 | Msa0614490:intron |
| GGACACCATGAATCTGAACT+GGG | 0.676928 | 4_2:-63547339 | Msa0614490:CDS |
| AACGTTTCTACCTGTCAGGG+AGG | 0.683737 | 4_2:-63547042 | Msa0614490:CDS |
| TTTGGTGTGCAGAAGCCTGT+GGG | 0.689087 | 4_2:-63550364 | Msa0614490:CDS |
| AAATCCTTTCCACAATACAA+GGG | 0.689638 | 4_2:+63547147 | None:intergenic |
| TACTATGGCAGGCATCCCCG+AGG | 0.703124 | 4_2:-63549653 | Msa0614490:CDS |
| GAGCCGATTCTACAGCCTCG+GGG | 0.740138 | 4_2:+63549638 | None:intergenic |
| AAAATGATTTGTGATACTGG+GGG | 0.788482 | 4_2:-63548686 | Msa0614490:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATGGTTATTATTTTATA+AGG | - | chr4_2:63547662-63547681 | Msa0614490:intron | 10.0% |
| !! | AACAAATTTAACAATAAAAT+TGG | + | chr4_2:63550642-63550661 | None:intergenic | 10.0% |
| !!! | AATTTTATTGTTAAATTTGT+TGG | - | chr4_2:63550641-63550660 | Msa0614490:five_prime_UTR | 10.0% |
| !!! | AAAAAAGATTGAATTTTTTG+GGG | + | chr4_2:63546952-63546971 | None:intergenic | 15.0% |
| !!! | GAAAAAAGATTGAATTTTTT+GGG | + | chr4_2:63546953-63546972 | None:intergenic | 15.0% |
| !!! | AGAAAAAAGATTGAATTTTT+TGG | + | chr4_2:63546954-63546973 | None:intergenic | 15.0% |
| !!! | TTTTAAATTTGTAACTGAAT+GGG | - | chr4_2:63547137-63547156 | Msa0614490:CDS | 15.0% |
| !! | AATATGTAATGAATATAAGA+AGG | + | chr4_2:63547554-63547573 | None:intergenic | 15.0% |
| !! | TTAATTAGAATCAATTATGA+AGG | - | chr4_2:63548317-63548336 | Msa0614490:intron | 15.0% |
| !!! | ATTTTTCTTAACTACAAAAA+TGG | + | chr4_2:63548814-63548833 | None:intergenic | 15.0% |
| !!! | ATTTTTGTAGTTAAGAAAAA+TGG | - | chr4_2:63548813-63548832 | Msa0614490:intron | 15.0% |
| !!! | ATTTTTTATGTTTCCAAAAT+CGG | + | chr4_2:63549907-63549926 | None:intergenic | 15.0% |
| !!! | CATAAAAAATCATTATTTTG+CGG | - | chr4_2:63549917-63549936 | Msa0614490:intron | 15.0% |
| !!! | CTTTTAAATTTGTAACTGAA+TGG | - | chr4_2:63547136-63547155 | Msa0614490:CDS | 20.0% |
| !! | GTTTCTGTTTCAATTATTTA+AGG | - | chr4_2:63547371-63547390 | Msa0614490:CDS | 20.0% |
| !!! | GTACAGTTTTTTGTTTTATT+TGG | + | chr4_2:63547431-63547450 | None:intergenic | 20.0% |
| !!! | TTAGTACAATATTTTATCCA+AGG | - | chr4_2:63547995-63548014 | Msa0614490:intron | 20.0% |
| !!! | TATTTTGAATGAATCAATTC+TGG | - | chr4_2:63548166-63548185 | Msa0614490:intron | 20.0% |
| !!! | AATTAACTTGAACTTGAAAT+TGG | + | chr4_2:63548303-63548322 | None:intergenic | 20.0% |
| !!! | ATAAGTTTTTGTCAAACATA+AGG | - | chr4_2:63548538-63548557 | Msa0614490:intron | 20.0% |
| !!! | TAAGTTTTTGTCAAACATAA+GGG | - | chr4_2:63548539-63548558 | Msa0614490:intron | 20.0% |
| !!! | ATAAAAATGATTTGTGATAC+TGG | - | chr4_2:63548885-63548904 | Msa0614490:CDS | 20.0% |
| !!! | TAAAAATGATTTGTGATACT+GGG | - | chr4_2:63548886-63548905 | Msa0614490:CDS | 20.0% |
| !!! | TTTTTTGGGGTAATTTTCTT+AGG | + | chr4_2:63546939-63546958 | None:intergenic | 25.0% |
| ! | AACACTTAAAATCATGGTTA+AGG | - | chr4_2:63547475-63547494 | Msa0614490:intron | 25.0% |
| ! | ATGCGTTACAATCTAAATTA+CGG | - | chr4_2:63547578-63547597 | Msa0614490:intron | 25.0% |
| !! | TGTGCATCATTTTATGATTA+TGG | - | chr4_2:63547646-63547665 | Msa0614490:intron | 25.0% |
| !! | TTCCAATGAATTCTAAAAGA+TGG | - | chr4_2:63547778-63547797 | Msa0614490:intron | 25.0% |
| !!! | AACCATCTTTTAGAATTCAT+TGG | + | chr4_2:63547783-63547802 | None:intergenic | 25.0% |
| !! | ATTGATTTCCTTTGTAGTTT+AGG | - | chr4_2:63547831-63547850 | Msa0614490:intron | 25.0% |
| ! | CTTAAGTTTGAAAATTACCT+TGG | + | chr4_2:63548015-63548034 | None:intergenic | 25.0% |
| ! | GGACACATTTACATAAAATT+AGG | - | chr4_2:63548223-63548242 | Msa0614490:intron | 25.0% |
| !! | CAATTGATTTAGTGTATGTT+TGG | + | chr4_2:63548379-63548398 | None:intergenic | 25.0% |
| ! | AAAGCTTAACAAGCTAAAAA+TGG | - | chr4_2:63548596-63548615 | Msa0614490:CDS | 25.0% |
| !! | TTAAGCATCTTGTATTTTCA+GGG | - | chr4_2:63548836-63548855 | Msa0614490:CDS | 25.0% |
| !! | AAAAATGATTTGTGATACTG+GGG | - | chr4_2:63548887-63548906 | Msa0614490:CDS | 25.0% |
| !! | AAAATCCTGTTGCTATTATT+AGG | - | chr4_2:63548943-63548962 | Msa0614490:CDS | 25.0% |
| ! | TCTCATAAAAACCAAAACTA+AGG | - | chr4_2:63549074-63549093 | Msa0614490:CDS | 25.0% |
| ! | TCACTAAATCTTACAATTTG+AGG | + | chr4_2:63549253-63549272 | None:intergenic | 25.0% |
| !!! | CGATATAATAGTTTTAAACC+TGG | - | chr4_2:63549321-63549340 | Msa0614490:intron | 25.0% |
| ! | AATCGTCACTAAACAAAATT+GGG | - | chr4_2:63549367-63549386 | Msa0614490:intron | 25.0% |
| !! | AAGAAAACTACCATTTGTTA+TGG | + | chr4_2:63549511-63549530 | None:intergenic | 25.0% |
| ! | TGGATGATAATTAGATTTGA+TGG | - | chr4_2:63549567-63549586 | Msa0614490:intron | 25.0% |
| ! | GGATGATAATTAGATTTGAT+GGG | - | chr4_2:63549568-63549587 | Msa0614490:intron | 25.0% |
| ! | AATCACTGTGATTTCATATA+TGG | + | chr4_2:63549695-63549714 | None:intergenic | 25.0% |
| ! | ATAGCTTCACTAATATGATT+AGG | + | chr4_2:63549778-63549797 | None:intergenic | 25.0% |
| ! | AATATTCAATACTCAGAATC+AGG | - | chr4_2:63549798-63549817 | Msa0614490:intron | 25.0% |
| ! | ATATTCAATACTCAGAATCA+GGG | - | chr4_2:63549799-63549818 | Msa0614490:intron | 25.0% |
| !!! | TGATCTTGCTTGTTAATTTT+TGG | - | chr4_2:63550137-63550156 | Msa0614490:intron | 25.0% |
| ! | TAGAAACAATTACAAGGTTT+GGG | - | chr4_2:63550377-63550396 | Msa0614490:CDS | 25.0% |
| ! | AACAATAATATCAGAAACGT+TGG | + | chr4_2:63550723-63550742 | None:intergenic | 25.0% |
| !!! | TTGATGATTTTCTACACATT+TGG | - | chr4_2:63550756-63550775 | Msa0614490:five_prime_UTR | 25.0% |
| ATATGAAGAGAAATGAGGAA+GGG | + | chr4_2:63546869-63546888 | None:intergenic | 30.0% | |
| TATATGAAGAGAAATGAGGA+AGG | + | chr4_2:63546870-63546889 | None:intergenic | 30.0% | |
| CCTATATATGAAGAGAAATG+AGG | + | chr4_2:63546874-63546893 | None:intergenic | 30.0% | |
| CCTCATTTCTCTTCATATAT+AGG | - | chr4_2:63546871-63546890 | Msa0614490:three_prime_UTR | 30.0% | |
| ! | GTAATTTTCTTAGGTCGTAA+GGG | + | chr4_2:63546930-63546949 | None:intergenic | 30.0% |
| AAAAAGCTCAATCCAGTTAT+GGG | - | chr4_2:63546991-63547010 | Msa0614490:three_prime_UTR | 30.0% | |
| CAATTCAAACAAGAGCAATA+AGG | - | chr4_2:63547041-63547060 | Msa0614490:CDS | 30.0% | |
| AAGAAGAAGAATAAGAACAG+AGG | - | chr4_2:63547075-63547094 | Msa0614490:CDS | 30.0% | |
| ! | AAAAGCCAAAACTTGTTCAT+GGG | + | chr4_2:63547121-63547140 | None:intergenic | 30.0% |
| ! | TAAAAGCCAAAACTTGTTCA+TGG | + | chr4_2:63547122-63547141 | None:intergenic | 30.0% |
| !!! | TCATCTCTTGTTGATGATTT+TGG | - | chr4_2:63547192-63547211 | Msa0614490:CDS | 30.0% |
| TGCTTGAACACTTAAAATCA+TGG | - | chr4_2:63547469-63547488 | Msa0614490:intron | 30.0% | |
| AGGATAATGAAGTCAGTTTA+AGG | - | chr4_2:63547682-63547701 | Msa0614490:intron | 30.0% | |
| TAATGAAGTCAGTTTAAGGA+TGG | - | chr4_2:63547686-63547705 | Msa0614490:intron | 30.0% | |
| GAAAGTTAACTGTATTGTAG+AGG | - | chr4_2:63547720-63547739 | Msa0614490:intron | 30.0% | |
| ! | TTCTAAAAGATGGTTGTCTA+AGG | - | chr4_2:63547788-63547807 | Msa0614490:intron | 30.0% |
| TGTTACCATTTGTTCATAAC+AGG | - | chr4_2:63547870-63547889 | Msa0614490:intron | 30.0% | |
| TTTCACCTGTTATGAACAAA+TGG | + | chr4_2:63547878-63547897 | None:intergenic | 30.0% | |
| ! | TTGATGCTTGTTGATTGAAT+TGG | - | chr4_2:63548039-63548058 | Msa0614490:intron | 30.0% |
| CAATTCTGGTATAAATGAGT+TGG | - | chr4_2:63548180-63548199 | Msa0614490:intron | 30.0% | |
| ! | TAAATGAGTTGGATGTAATG+TGG | - | chr4_2:63548191-63548210 | Msa0614490:intron | 30.0% |
| ! | TAGGTTGAACGATAAATTTG+AGG | - | chr4_2:63548242-63548261 | Msa0614490:intron | 30.0% |
| !!! | AAGTCCTTTTTTTTCTCCAT+TGG | - | chr4_2:63548405-63548424 | Msa0614490:intron | 30.0% |
| AGAACCAATGGAGAAAAAAA+AGG | + | chr4_2:63548412-63548431 | None:intergenic | 30.0% | |
| TAATATGCTAAAACGTGAAC+AGG | + | chr4_2:63548483-63548502 | None:intergenic | 30.0% | |
| TTAGCATATTACAGCAGTAT+TGG | - | chr4_2:63548492-63548511 | Msa0614490:intron | 30.0% | |
| TATTGGACCATCAAAATTTG+AGG | - | chr4_2:63548509-63548528 | Msa0614490:intron | 30.0% | |
| ! | TTTTTGTCAAACATAAGGGA+CGG | - | chr4_2:63548543-63548562 | Msa0614490:intron | 30.0% |
| AGCTAAAAATGGCTCTTAAA+TGG | - | chr4_2:63548607-63548626 | Msa0614490:CDS | 30.0% | |
| GCTAAAAATGGCTCTTAAAT+GGG | - | chr4_2:63548608-63548627 | Msa0614490:CDS | 30.0% | |
| ! | GTTAAGCATCTTGTATTTTC+AGG | - | chr4_2:63548835-63548854 | Msa0614490:CDS | 30.0% |
| ! | TAAGCATCTTGTATTTTCAG+GGG | - | chr4_2:63548837-63548856 | Msa0614490:CDS | 30.0% |
| ! | AAAATGATTTGTGATACTGG+GGG | - | chr4_2:63548888-63548907 | Msa0614490:CDS | 30.0% |
| CATAAAAACCAAAACTAAGG+TGG | - | chr4_2:63549077-63549096 | Msa0614490:CDS | 30.0% | |
| ACTTTGTCAATTGTCATACA+AGG | - | chr4_2:63549104-63549123 | Msa0614490:CDS | 30.0% | |
| TGTGATGTTATCAAATCATC+AGG | - | chr4_2:63549198-63549217 | Msa0614490:intron | 30.0% | |
| CAATCGTCACTAAACAAAAT+TGG | - | chr4_2:63549366-63549385 | Msa0614490:intron | 30.0% | |
| !!! | TCAGAATCAGGGTTTTAAAT+GGG | - | chr4_2:63549810-63549829 | Msa0614490:intron | 30.0% |
| TTTGATATTGCAATGAAACG+TGG | - | chr4_2:63549866-63549885 | Msa0614490:intron | 30.0% | |
| TGTTGTCACAATTGTGTAAT+AGG | - | chr4_2:63550070-63550089 | Msa0614490:intron | 30.0% | |
| ! | AGTTTTGCATGACTTTCTTA+AGG | - | chr4_2:63550279-63550298 | Msa0614490:CDS | 30.0% |
| TATATGGTGCAATGCTATAA+GGG | - | chr4_2:63550312-63550331 | Msa0614490:CDS | 30.0% | |
| CAATGCTATAAGGGAATTAT+TGG | - | chr4_2:63550321-63550340 | Msa0614490:CDS | 30.0% | |
| ! | GTTTCTAGGTTAGTATTAGA+CGG | + | chr4_2:63550364-63550383 | None:intergenic | 30.0% |
| CTAACCTAGAAACAATTACA+AGG | - | chr4_2:63550371-63550390 | Msa0614490:CDS | 30.0% | |
| ! | CAAACCTTGTAATTGTTTCT+AGG | + | chr4_2:63550378-63550397 | None:intergenic | 30.0% |
| CTAGAAACAATTACAAGGTT+TGG | - | chr4_2:63550376-63550395 | Msa0614490:CDS | 30.0% | |
| AAATCCTTTCCACAATACAA+GGG | + | chr4_2:63550430-63550449 | None:intergenic | 30.0% | |
| TTGATCATTGTTTACCTCTT+TGG | - | chr4_2:63550452-63550471 | Msa0614490:CDS | 30.0% | |
| CTCTTCATATATAGGTTCAG+AGG | - | chr4_2:63546879-63546898 | Msa0614490:three_prime_UTR | 35.0% | |
| ! | GGTAATTTTCTTAGGTCGTA+AGG | + | chr4_2:63546931-63546950 | None:intergenic | 35.0% |
| CAAAAAGCTCAATCCAGTTA+TGG | - | chr4_2:63546990-63547009 | Msa0614490:three_prime_UTR | 35.0% | |
| AAGAAGAATAAGAACAGAGG+TGG | - | chr4_2:63547078-63547097 | Msa0614490:CDS | 35.0% | |
| ! | TGTAACTGAATGGGTTTCAT+TGG | - | chr4_2:63547146-63547165 | Msa0614490:CDS | 35.0% |
| ATGAAGTAGCGAAAGAAGAA+GGG | + | chr4_2:63547176-63547195 | None:intergenic | 35.0% | |
| ! | GTTAAGGACGTTTAAAACTG+TGG | - | chr4_2:63547491-63547510 | Msa0614490:intron | 35.0% |
| CTGTGGTTAATTGTATTCAG+AGG | - | chr4_2:63547508-63547527 | Msa0614490:intron | 35.0% | |
| GCACATATTTCAAAGAGTTG+TGG | + | chr4_2:63547631-63547650 | None:intergenic | 35.0% | |
| !!! | TCCATCTCCACTTATTTTAG+AGG | + | chr4_2:63547746-63547765 | None:intergenic | 35.0% |
| AAAACGAGCCTAAACTACAA+AGG | + | chr4_2:63547842-63547861 | None:intergenic | 35.0% | |
| TATGGCATTAAGATAATCCC+AGG | - | chr4_2:63547964-63547983 | Msa0614490:intron | 35.0% | |
| TTGTACTAACTTCAACACCT+GGG | + | chr4_2:63547984-63548003 | None:intergenic | 35.0% | |
| ATTGTACTAACTTCAACACC+TGG | + | chr4_2:63547985-63548004 | None:intergenic | 35.0% | |
| ! | TGTTGATTGAATTGGCACTT+TGG | - | chr4_2:63548047-63548066 | Msa0614490:intron | 35.0% |
| TAATTGTCCAAGTGCATGTT+TGG | - | chr4_2:63548124-63548143 | Msa0614490:intron | 35.0% | |
| GATGTAATGTGGTTTATGTC+TGG | - | chr4_2:63548202-63548221 | Msa0614490:intron | 35.0% | |
| AGGCTGAAATTCAATTGTAG+AGG | - | chr4_2:63548262-63548281 | Msa0614490:intron | 35.0% | |
| !!! | ATGTTTGGTTCCACTTTTTG+AGG | + | chr4_2:63548364-63548383 | None:intergenic | 35.0% |
| !! | TCTAGCTCCTCAAATTTTGA+TGG | + | chr4_2:63548519-63548538 | None:intergenic | 35.0% |
| TTATCTTCGAGCAAAGAACA+TGG | - | chr4_2:63548569-63548588 | Msa0614490:intron | 35.0% | |
| ! | TTAAATGGGAGCATGTTTGT+AGG | - | chr4_2:63548622-63548641 | Msa0614490:CDS | 35.0% |
| ATCAAAAAGATATCGGGCAA+AGG | + | chr4_2:63548733-63548752 | None:intergenic | 35.0% | |
| ! | TTTGCCCGATATCTTTTTGA+TGG | - | chr4_2:63548732-63548751 | Msa0614490:intron | 35.0% |
| TCCACCATCAAAAAGATATC+GGG | + | chr4_2:63548739-63548758 | None:intergenic | 35.0% | |
| GTCCACCATCAAAAAGATAT+CGG | + | chr4_2:63548740-63548759 | None:intergenic | 35.0% | |
| CAATATTACTTGGAGTAAGC+AGG | + | chr4_2:63548762-63548781 | None:intergenic | 35.0% | |
| ATCTAGCAATCAACAAGTGA+AGG | + | chr4_2:63548790-63548809 | None:intergenic | 35.0% | |
| !!! | ACAGGATTTTTTAATGCCCA+TGG | + | chr4_2:63548933-63548952 | None:intergenic | 35.0% |
| ! | ATCCTGTTGCTATTATTAGG+AGG | - | chr4_2:63548946-63548965 | Msa0614490:CDS | 35.0% |
| AACCTCCTAATAATAGCAAC+AGG | + | chr4_2:63548951-63548970 | None:intergenic | 35.0% | |
| ATTAGGAGGTTAAAAGAAGC+AGG | - | chr4_2:63548960-63548979 | Msa0614490:CDS | 35.0% | |
| ! | AAGTAGATCCACCTTAGTTT+TGG | + | chr4_2:63549088-63549107 | None:intergenic | 35.0% |
| ATAACAAGTGAAGTGATGCA+TGG | - | chr4_2:63549294-63549313 | Msa0614490:intron | 35.0% | |
| !! | TAAGCTGTTTTGTCATTTCC+AGG | + | chr4_2:63549342-63549361 | None:intergenic | 35.0% |
| ! | GGTTATTACGTAAGTGTTGT+GGG | + | chr4_2:63549456-63549475 | None:intergenic | 35.0% |
| ! | TGGTTATTACGTAAGTGTTG+TGG | + | chr4_2:63549457-63549476 | None:intergenic | 35.0% |
| ! | TAATGACTTGTGCATTCACT+TGG | + | chr4_2:63549477-63549496 | None:intergenic | 35.0% |
| TCTGTGTGTTCCATAACAAA+TGG | - | chr4_2:63549498-63549517 | Msa0614490:intron | 35.0% | |
| ATCATCCAATGTCCACAAAA+AGG | + | chr4_2:63549555-63549574 | None:intergenic | 35.0% | |
| CTTCATACAGTCTCTTTATG+TGG | + | chr4_2:63549654-63549673 | None:intergenic | 35.0% | |
| !!! | CTCAGAATCAGGGTTTTAAA+TGG | - | chr4_2:63549809-63549828 | Msa0614490:intron | 35.0% |
| !!! | CAGAATCAGGGTTTTAAATG+GGG | - | chr4_2:63549811-63549830 | Msa0614490:intron | 35.0% |
| !!! | AGAATCAGGGTTTTAAATGG+GGG | - | chr4_2:63549812-63549831 | Msa0614490:intron | 35.0% |
| AAAATCGGATGTTACTGCAT+TGG | + | chr4_2:63549892-63549911 | None:intergenic | 35.0% | |
| ! | AATGCAGTAACATCCGATTT+TGG | - | chr4_2:63549891-63549910 | Msa0614490:intron | 35.0% |
| TGTTCGTTTATGACTAGACA+TGG | + | chr4_2:63549994-63550013 | None:intergenic | 35.0% | |
| ACAACACAATGAGATGTAGT+AGG | + | chr4_2:63550056-63550075 | None:intergenic | 35.0% | |
| AAGTCATGCAAAACTAGTAC+TGG | + | chr4_2:63550274-63550293 | None:intergenic | 35.0% | |
| ATGACTTTCTTAAGGTAGCT+AGG | - | chr4_2:63550287-63550306 | Msa0614490:CDS | 35.0% | |
| CTTATAGCATTGCACCATAT+AGG | + | chr4_2:63550313-63550332 | None:intergenic | 35.0% | |
| CTATATGGTGCAATGCTATA+AGG | - | chr4_2:63550311-63550330 | Msa0614490:CDS | 35.0% | |
| CAAATCCTTTCCACAATACA+AGG | + | chr4_2:63550431-63550450 | None:intergenic | 35.0% | |
| ! | ACTCTTCATTTTCCATCTCT+TGG | + | chr4_2:63550486-63550505 | None:intergenic | 35.0% |
| GATGGAAAATGAAGAGTTTG+AGG | - | chr4_2:63550489-63550508 | Msa0614490:CDS | 35.0% | |
| TTCTAAGTCTCTATGAGAAC+CGG | + | chr4_2:63550562-63550581 | None:intergenic | 35.0% | |
| CAAAGATCCCTTCACTGTAA+GGG | - | chr4_2:63546836-63546855 | Msa0614490:three_prime_UTR | 40.0% | |
| TAGGTTACCCTTACAGTGAA+GGG | + | chr4_2:63546846-63546865 | None:intergenic | 40.0% | |
| !! | AAGGGTGAGTGAGTTTGTTA+CGG | + | chr4_2:63546912-63546931 | None:intergenic | 40.0% |
| ! | ATTGAGCTTTTTGCCTGAAG+CGG | + | chr4_2:63546983-63547002 | None:intergenic | 40.0% |
| ! | GATGACCCATGAACAAGTTT+TGG | - | chr4_2:63547113-63547132 | Msa0614490:CDS | 40.0% |
| GATGAAGTAGCGAAAGAAGA+AGG | + | chr4_2:63547177-63547196 | None:intergenic | 40.0% | |
| TGTCACTCTAAATGCAGTGA+TGG | - | chr4_2:63547267-63547286 | Msa0614490:CDS | 40.0% | |
| ! | TGGCTTTTTGTCTCCTTCTA+AGG | - | chr4_2:63547287-63547306 | Msa0614490:CDS | 40.0% |
| AAGTCAGTTTAAGGATGGTG+TGG | - | chr4_2:63547691-63547710 | Msa0614490:intron | 40.0% | |
| !! | GTAGAGGCCTCTAAAATAAG+TGG | - | chr4_2:63547736-63547755 | Msa0614490:intron | 40.0% |
| !! | GCCTCTAAAATAAGTGGAGA+TGG | - | chr4_2:63547742-63547761 | Msa0614490:intron | 40.0% |
| TCTGACAGATCACGATACTA+TGG | - | chr4_2:63547906-63547925 | Msa0614490:intron | 40.0% | |
| TGTAGAACCAAACATGCACT+TGG | + | chr4_2:63548134-63548153 | None:intergenic | 40.0% | |
| !! | AAGTGCATGTTTGGTTCTAC+AGG | - | chr4_2:63548133-63548152 | Msa0614490:intron | 40.0% |
| !! | AGTGCATGTTTGGTTCTACA+GGG | - | chr4_2:63548134-63548153 | Msa0614490:intron | 40.0% |
| CTACTTACCTCCTCAAAAAG+TGG | - | chr4_2:63548351-63548370 | Msa0614490:intron | 40.0% | |
| !!! | TTTGGTTCCACTTTTTGAGG+AGG | + | chr4_2:63548361-63548380 | None:intergenic | 40.0% |
| GAAGGCAACGCAATATTACT+TGG | + | chr4_2:63548772-63548791 | None:intergenic | 40.0% | |
| TTAAAAGAAGCAGGCCTTCA+TGG | - | chr4_2:63548969-63548988 | Msa0614490:CDS | 40.0% | |
| TAAAAGAAGCAGGCCTTCAT+GGG | - | chr4_2:63548970-63548989 | Msa0614490:CDS | 40.0% | |
| ATGGAGGTCTACAAAAGTGA+TGG | - | chr4_2:63548993-63549012 | Msa0614490:CDS | 40.0% | |
| ! | AGGTCTACAAAAGTGATGGA+AGG | - | chr4_2:63548997-63549016 | Msa0614490:CDS | 40.0% |
| TCCAATGTCCACAAAAAGGT+GGG | + | chr4_2:63549551-63549570 | None:intergenic | 40.0% | |
| ATCCAATGTCCACAAAAAGG+TGG | + | chr4_2:63549552-63549571 | None:intergenic | 40.0% | |
| GTCTCTTTATGTGGATCAGA+AGG | + | chr4_2:63549645-63549664 | None:intergenic | 40.0% | |
| AAAGAGACTGTATGAAGCCT+AGG | - | chr4_2:63549657-63549676 | Msa0614490:CDS | 40.0% | |
| ATCATGGGATGAATAGCAGA+TGG | + | chr4_2:63549741-63549760 | None:intergenic | 40.0% | |
| CTGCTATTCATCCCATGATA+TGG | - | chr4_2:63549742-63549761 | Msa0614490:intron | 40.0% | |
| !! | GCAAGAAGCATCCATATCAT+GGG | + | chr4_2:63549756-63549775 | None:intergenic | 40.0% |
| GAGATGTAGTAGGCAGTATT+CGG | + | chr4_2:63550046-63550065 | None:intergenic | 40.0% | |
| ! | TCCAATTTTCAAAAGGCCGT+AGG | + | chr4_2:63550191-63550210 | None:intergenic | 40.0% |
| !! | TACGGCCTTTTGAAAATTGG+AGG | - | chr4_2:63550190-63550209 | Msa0614490:intron | 40.0% |
| !! | ACGGCCTTTTGAAAATTGGA+GGG | - | chr4_2:63550191-63550210 | Msa0614490:intron | 40.0% |
| ! | CTGACCCTCCAATTTTCAAA+AGG | + | chr4_2:63550198-63550217 | None:intergenic | 40.0% |
| ! | CATGCAAAACTAGTACTGGA+AGG | + | chr4_2:63550270-63550289 | None:intergenic | 40.0% |
| TTAAGGTAGCTAGGCCTATA+TGG | - | chr4_2:63550296-63550315 | Msa0614490:CDS | 40.0% | |
| ! | ATTATTGGAGTGTTATGCCG+AGG | - | chr4_2:63550336-63550355 | Msa0614490:CDS | 40.0% |
| GTTAGTATTAGACGGTTCCT+CGG | + | chr4_2:63550356-63550375 | None:intergenic | 40.0% | |
| TGAACCTCCCTTAAAAATGC+GGG | + | chr4_2:63550407-63550426 | None:intergenic | 40.0% | |
| GTGAACCTCCCTTAAAAATG+CGG | + | chr4_2:63550408-63550427 | None:intergenic | 40.0% | |
| TTCACCCTTGTATTGTGGAA+AGG | - | chr4_2:63550423-63550442 | Msa0614490:CDS | 40.0% | |
| TCTTGGCTACTTAACCAAAG+AGG | + | chr4_2:63550469-63550488 | None:intergenic | 40.0% | |
| TTGGTTAAGTAGCCAAGAGA+TGG | - | chr4_2:63550471-63550490 | Msa0614490:CDS | 40.0% | |
| AACGTTGGAAAGCTTCAACT+TGG | + | chr4_2:63550518-63550537 | None:intergenic | 40.0% | |
| CCTTACAGTGAAGGGATCTT+TGG | + | chr4_2:63546838-63546857 | None:intergenic | 45.0% | |
| CCAAAGATCCCTTCACTGTA+AGG | - | chr4_2:63546835-63546854 | Msa0614490:three_prime_UTR | 45.0% | |
| GTAGGTTACCCTTACAGTGA+AGG | + | chr4_2:63546847-63546866 | None:intergenic | 45.0% | |
| GAAGAGAAATGAGGAAGGGT+AGG | + | chr4_2:63546865-63546884 | None:intergenic | 45.0% | |
| !! | AGGGTGAGTGAGTTTGTTAC+GGG | + | chr4_2:63546911-63546930 | None:intergenic | 45.0% |
| ! | TTTTTCTTCTCCACCGCTTC+AGG | - | chr4_2:63546967-63546986 | Msa0614490:three_prime_UTR | 45.0% |
| CTCAATCCAGTTATGGGAGA+TGG | - | chr4_2:63546997-63547016 | Msa0614490:three_prime_UTR | 45.0% | |
| CAGAAGCCTGTGGGAAAAAA+TGG | - | chr4_2:63547219-63547238 | Msa0614490:CDS | 45.0% | |
| TGTGGGAAAAAATGGCGACA+GGG | - | chr4_2:63547227-63547246 | Msa0614490:CDS | 45.0% | |
| GCTCTCTCAACAACCTTAGA+AGG | + | chr4_2:63547303-63547322 | None:intergenic | 45.0% | |
| GTTGAGAGAGCTCACATCAA+TGG | - | chr4_2:63547312-63547331 | Msa0614490:CDS | 45.0% | |
| TTTAAGGATGGTGTGGCTGA+TGG | - | chr4_2:63547698-63547717 | Msa0614490:intron | 45.0% | |
| ACAGATCACGATACTATGGC+AGG | - | chr4_2:63547910-63547929 | Msa0614490:intron | 45.0% | |
| !! | GTAGAATCGGCTCGCAAATA+TGG | - | chr4_2:63547946-63547965 | Msa0614490:intron | 45.0% |
| CTTGTGTTGCCTCTAACTAG+AGG | - | chr4_2:63548074-63548093 | Msa0614490:intron | 45.0% | |
| TGTTGCCTCTAACTAGAGGA+GGG | - | chr4_2:63548078-63548097 | Msa0614490:intron | 45.0% | |
| TGGGCAAACATCAGAACCAA+TGG | + | chr4_2:63548424-63548443 | None:intergenic | 45.0% | |
| TCTGATGTTTGCCCATCTAC+TGG | - | chr4_2:63548429-63548448 | Msa0614490:intron | 45.0% | |
| GAGCATGTTTGTAGGATTGC+AGG | - | chr4_2:63548630-63548649 | Msa0614490:CDS | 45.0% | |
| GTTTGTAGGATTGCAGGCAA+CGG | - | chr4_2:63548636-63548655 | Msa0614490:CDS | 45.0% | |
| AACCTGCTTCAACCATAGCA+CGG | + | chr4_2:63548689-63548708 | None:intergenic | 45.0% | |
| ! | GCCCGATATCTTTTTGATGG+TGG | - | chr4_2:63548735-63548754 | Msa0614490:intron | 45.0% |
| TTTATTGCTTCCTCCACCAC+AGG | + | chr4_2:63548870-63548889 | None:intergenic | 45.0% | |
| ! | AAAAGTGATGGAAGGCTTGC+AGG | - | chr4_2:63549005-63549024 | Msa0614490:CDS | 45.0% |
| CCAATGTCCACAAAAAGGTG+GGG | + | chr4_2:63549550-63549569 | None:intergenic | 45.0% | |
| TGTATGAAGCCTAGGCTTAG+TGG | - | chr4_2:63549665-63549684 | Msa0614490:CDS | 45.0% | |
| TATGGTCAACCACTAAGCCT+AGG | + | chr4_2:63549677-63549696 | None:intergenic | 45.0% | |
| !! | GGCAAGAAGCATCCATATCA+TGG | + | chr4_2:63549757-63549776 | None:intergenic | 45.0% |
| !! | ATGGTTAGCCTCTATCTCAC+CGG | + | chr4_2:63549975-63549994 | None:intergenic | 45.0% |
| GTATGCAGCATATAGTGACC+TGG | - | chr4_2:63550159-63550178 | Msa0614490:intron | 45.0% | |
| !! | GCCTACGGCCTTTTGAAAAT+TGG | - | chr4_2:63550187-63550206 | Msa0614490:intron | 45.0% |
| ATTGGAGGGTCAGACTATCA+TGG | - | chr4_2:63550205-63550224 | Msa0614490:intron | 45.0% | |
| TCAGACTATCATGGAAGAGG+AGG | - | chr4_2:63550214-63550233 | Msa0614490:intron | 45.0% | |
| AGGACACCATGAATCTGAAC+TGG | - | chr4_2:63550234-63550253 | Msa0614490:intron | 45.0% | |
| GGACACCATGAATCTGAACT+GGG | - | chr4_2:63550235-63550254 | Msa0614490:intron | 45.0% | |
| CACTTCCCAGTTCAGATTCA+TGG | + | chr4_2:63550243-63550262 | None:intergenic | 45.0% | |
| ! | TGGGAGAACCCGCATTTTTA+AGG | - | chr4_2:63550396-63550415 | Msa0614490:CDS | 45.0% |
| ! | GGGAGAACCCGCATTTTTAA+GGG | - | chr4_2:63550397-63550416 | Msa0614490:CDS | 45.0% |
| !! | AGAACCCGCATTTTTAAGGG+AGG | - | chr4_2:63550400-63550419 | Msa0614490:CDS | 45.0% |
| TTCCAACGTTTCTACCTGTC+AGG | - | chr4_2:63550528-63550547 | Msa0614490:CDS | 45.0% | |
| TCCAACGTTTCTACCTGTCA+GGG | - | chr4_2:63550529-63550548 | Msa0614490:CDS | 45.0% | |
| !! | GAAGGGATCTTTGGAGTCAC+AGG | + | chr4_2:63546829-63546848 | None:intergenic | 50.0% |
| !! | TTTTGGTGTGCAGAAGCCTG+TGG | - | chr4_2:63547209-63547228 | Msa0614490:CDS | 50.0% |
| ! | TTTGGTGTGCAGAAGCCTGT+GGG | - | chr4_2:63547210-63547229 | Msa0614490:CDS | 50.0% |
| !!! | CTGTCGCCATTTTTTCCCAC+AGG | + | chr4_2:63547228-63547247 | None:intergenic | 50.0% |
| CTGTGGGAAAAAATGGCGAC+AGG | - | chr4_2:63547226-63547245 | Msa0614490:CDS | 50.0% | |
| GTGTTGCCTCTAACTAGAGG+AGG | - | chr4_2:63548077-63548096 | Msa0614490:intron | 50.0% | |
| GTTGCCTCTAACTAGAGGAG+GGG | - | chr4_2:63548079-63548098 | Msa0614490:intron | 50.0% | |
| TTGCCTCTAACTAGAGGAGG+GGG | - | chr4_2:63548080-63548099 | Msa0614490:intron | 50.0% | |
| ACCTGCTTCAACCATAGCAC+GGG | + | chr4_2:63548688-63548707 | None:intergenic | 50.0% | |
| TTTCAGGGGAAGTGAACCTG+TGG | - | chr4_2:63548851-63548870 | Msa0614490:CDS | 50.0% | |
| TGTAGACCTCCATCCCATGA+AGG | + | chr4_2:63548986-63549005 | None:intergenic | 50.0% | |
| ! | TGCACTACCCCACCTTTTTG+TGG | - | chr4_2:63549540-63549559 | Msa0614490:intron | 50.0% |
| ! | CCCCACCTTTTTGTGGACAT+TGG | - | chr4_2:63549547-63549566 | Msa0614490:intron | 50.0% |
| ACTCATCACTACCGCCAACT+TGG | - | chr4_2:63549944-63549963 | Msa0614490:intron | 50.0% | |
| CTCATCACTACCGCCAACTT+GGG | - | chr4_2:63549945-63549964 | Msa0614490:intron | 50.0% | |
| GGGTCAGACTATCATGGAAG+AGG | - | chr4_2:63550211-63550230 | Msa0614490:intron | 50.0% | |
| GGAGGTTCACCCTTGTATTG+TGG | - | chr4_2:63550418-63550437 | Msa0614490:CDS | 50.0% | |
| TCCCTGACAGGTAGAAACGT+TGG | + | chr4_2:63550533-63550552 | None:intergenic | 50.0% | |
| AACGTTTCTACCTGTCAGGG+AGG | - | chr4_2:63550532-63550551 | Msa0614490:CDS | 50.0% | |
| ! | GAGCTTTTTGCCTGAAGCGG+TGG | + | chr4_2:63546980-63546999 | None:intergenic | 55.0% |
| GCGATGCCATCTCCCATAAC+TGG | + | chr4_2:63547006-63547025 | None:intergenic | 55.0% | |
| CATCCCCGAGGCTGTAGAAT+CGG | - | chr4_2:63547933-63547952 | Msa0614490:intron | 55.0% | |
| TGCCTCTAACTAGAGGAGGG+GGG | - | chr4_2:63548081-63548100 | Msa0614490:intron | 55.0% | |
| TTCCCCCCTCCTCTAGTTAG+AGG | + | chr4_2:63548086-63548105 | None:intergenic | 55.0% | |
| GTTTGCCCATCTACTGGCAG+TGG | - | chr4_2:63548435-63548454 | Msa0614490:intron | 55.0% | |
| CTCCACCACTGCCAGTAGAT+GGG | + | chr4_2:63548443-63548462 | None:intergenic | 55.0% | |
| TCTCCACCACTGCCAGTAGA+TGG | + | chr4_2:63548444-63548463 | None:intergenic | 55.0% | |
| TGGTGGAGACACTGAAGCAG+AGG | - | chr4_2:63548455-63548474 | Msa0614490:intron | 55.0% | |
| ! | CAACCATAGCACGGGCTACA+TGG | + | chr4_2:63548680-63548699 | None:intergenic | 55.0% |
| !! | TTGCCGTTCTGGCTCATCCA+TGG | - | chr4_2:63548913-63548932 | Msa0614490:CDS | 55.0% |
| !! | TGCCGTTCTGGCTCATCCAT+GGG | - | chr4_2:63548914-63548933 | Msa0614490:CDS | 55.0% |
| TGCCCATGGATGAGCCAGAA+CGG | + | chr4_2:63548919-63548938 | None:intergenic | 55.0% | |
| AGAAGCAGGCCTTCATGGGA+TGG | - | chr4_2:63548974-63548993 | Msa0614490:CDS | 55.0% | |
| AGTGACCTGGCTGATGCCTA+CGG | - | chr4_2:63550172-63550191 | Msa0614490:intron | 55.0% | |
| TACCTGTCAGGGAGGAACTC+CGG | - | chr4_2:63550540-63550559 | Msa0614490:CDS | 55.0% | |
| TACTATGGCAGGCATCCCCG+AGG | - | chr4_2:63547921-63547940 | Msa0614490:intron | 60.0% | |
| ! | GAGCCGATTCTACAGCCTCG+GGG | + | chr4_2:63547939-63547958 | None:intergenic | 60.0% |
| ! | CGAGCCGATTCTACAGCCTC+GGG | + | chr4_2:63547940-63547959 | None:intergenic | 60.0% |
| ! | GCGAGCCGATTCTACAGCCT+CGG | + | chr4_2:63547941-63547960 | None:intergenic | 60.0% |
| TGCCCATCTACTGGCAGTGG+TGG | - | chr4_2:63548438-63548457 | Msa0614490:intron | 60.0% | |
| ! | ACGGGCTACATGGAGCCTTC+CGG | + | chr4_2:63548670-63548689 | None:intergenic | 60.0% |
| GCTCCATGTAGCCCGTGCTA+TGG | - | chr4_2:63548674-63548693 | Msa0614490:CDS | 60.0% | |
| GCCCGTGCTATGGTTGAAGC+AGG | - | chr4_2:63548684-63548703 | Msa0614490:CDS | 60.0% | |
| CAGGGGAAGTGAACCTGTGG+TGG | - | chr4_2:63548854-63548873 | Msa0614490:CDS | 60.0% | |
| GGGAAGTGAACCTGTGGTGG+AGG | - | chr4_2:63548857-63548876 | Msa0614490:CDS | 60.0% | |
| !! | TACTGGGGGTGTTGCCGTTC+TGG | - | chr4_2:63548902-63548921 | Msa0614490:CDS | 60.0% |
| AGCAGGCCTTCATGGGATGG+AGG | - | chr4_2:63548977-63548996 | Msa0614490:CDS | 60.0% | |
| !! | TACCGCCAACTTGGGCTAGC+CGG | - | chr4_2:63549953-63549972 | Msa0614490:intron | 60.0% |
| ! | TCTCACCGGCTAGCCCAAGT+TGG | + | chr4_2:63549961-63549980 | None:intergenic | 60.0% |
| !! | TGGGCTAGCCGGTGAGATAG+AGG | - | chr4_2:63549964-63549983 | Msa0614490:intron | 60.0% |
| AAAGGCCGTAGGCATCAGCC+AGG | + | chr4_2:63550180-63550199 | None:intergenic | 60.0% | |
| AACCGGAGTTCCTCCCTGAC+AGG | + | chr4_2:63550545-63550564 | None:intergenic | 60.0% | |
| GCAGGCAACGGAGTTGCTCC+CGG | - | chr4_2:63548648-63548667 | Msa0614490:CDS | 65.0% | |
| GCAACGGAGTTGCTCCCGGA+AGG | - | chr4_2:63548652-63548671 | Msa0614490:CDS | 65.0% | |
| CGGGCTACATGGAGCCTTCC+GGG | + | chr4_2:63548669-63548688 | None:intergenic | 65.0% | |
| ! | CACCGGCTAGCCCAAGTTGG+CGG | + | chr4_2:63549958-63549977 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 63546817 | 63550779 | 63546817 | ID=Msa0614490;Name=Msa0614490 |
| chr4_2 | mRNA | 63546817 | 63550779 | 63546817 | ID=Msa0614490-mRNA-1;Parent=Msa0614490;Name=Msa0614490-mRNA-1;_AED=0.03;_eAED=0.03;_QI=192|1|1|1|1|1|5|200|450 |
| chr4_2 | exon | 63546817 | 63547429 | 63546817 | ID=Msa0614490-mRNA-1:exon:17743;Parent=Msa0614490-mRNA-1 |
| chr4_2 | exon | 63548570 | 63548739 | 63548570 | ID=Msa0614490-mRNA-1:exon:17742;Parent=Msa0614490-mRNA-1 |
| chr4_2 | exon | 63548824 | 63549141 | 63548824 | ID=Msa0614490-mRNA-1:exon:17741;Parent=Msa0614490-mRNA-1 |
| chr4_2 | exon | 63549580 | 63549704 | 63549580 | ID=Msa0614490-mRNA-1:exon:17740;Parent=Msa0614490-mRNA-1 |
| chr4_2 | exon | 63550261 | 63550779 | 63550261 | ID=Msa0614490-mRNA-1:exon:17739;Parent=Msa0614490-mRNA-1 |
| chr4_2 | five_prime_UTR | 63550588 | 63550779 | 63550588 | ID=Msa0614490-mRNA-1:five_prime_utr;Parent=Msa0614490-mRNA-1 |
| chr4_2 | CDS | 63550261 | 63550587 | 63550261 | ID=Msa0614490-mRNA-1:cds;Parent=Msa0614490-mRNA-1 |
| chr4_2 | CDS | 63549580 | 63549704 | 63549580 | ID=Msa0614490-mRNA-1:cds;Parent=Msa0614490-mRNA-1 |
| chr4_2 | CDS | 63548824 | 63549141 | 63548824 | ID=Msa0614490-mRNA-1:cds;Parent=Msa0614490-mRNA-1 |
| chr4_2 | CDS | 63548570 | 63548739 | 63548570 | ID=Msa0614490-mRNA-1:cds;Parent=Msa0614490-mRNA-1 |
| chr4_2 | CDS | 63547017 | 63547429 | 63547017 | ID=Msa0614490-mRNA-1:cds;Parent=Msa0614490-mRNA-1 |
| chr4_2 | three_prime_UTR | 63546817 | 63547016 | 63546817 | ID=Msa0614490-mRNA-1:three_prime_utr;Parent=Msa0614490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
