Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0697690 | XP_013457203.1 | 98.226 | 451 | 7 | 1 | 1 | 450 | 1 | 451 | 0.0 | 914 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0697690 | sp|P44176|RNAAM_HAEIN | 35.714 | 266 | 135 | 9 | 83 | 333 | 5 | 249 | 5.83e-31 | 123 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0697690 | A0A072UN52 | 98.226 | 451 | 7 | 1 | 1 | 450 | 1 | 451 | 0.0 | 914 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008340 | Msa0697690 | 0.804850 | 1.772288e-49 | -8.615850e-47 |
| Msa0008410 | Msa0697690 | 0.822203 | 2.685351e-53 | -8.615850e-47 |
| Msa0032370 | Msa0697690 | 0.824079 | 9.803024e-54 | -8.615850e-47 |
| Msa0047980 | Msa0697690 | 0.820861 | 5.484528e-53 | -8.615850e-47 |
| Msa0073670 | Msa0697690 | 0.816385 | 5.681852e-52 | -8.615850e-47 |
| Msa0077200 | Msa0697690 | 0.802175 | 6.353689e-49 | -8.615850e-47 |
| Msa0092690 | Msa0697690 | -0.801590 | 8.381402e-49 | -8.615850e-47 |
| Msa0094950 | Msa0697690 | 0.806775 | 6.982185e-50 | -8.615850e-47 |
| Msa0113160 | Msa0697690 | 0.813193 | 2.897781e-51 | -8.615850e-47 |
| Msa0120330 | Msa0697690 | 0.802077 | 6.657071e-49 | -8.615850e-47 |
| Msa0614490 | Msa0697690 | 0.867750 | 1.086792e-65 | -8.615850e-47 |
| Msa0616340 | Msa0697690 | 0.831500 | 1.611572e-55 | -8.615850e-47 |
| Msa0638690 | Msa0697690 | 0.828419 | 9.086636e-55 | -8.615850e-47 |
| Msa0639120 | Msa0697690 | 0.899032 | 2.959226e-77 | -8.615850e-47 |
| Msa0663900 | Msa0697690 | 0.806877 | 6.644256e-50 | -8.615850e-47 |
| Msa0669850 | Msa0697690 | 0.804004 | 2.659118e-49 | -8.615850e-47 |
| Msa0687230 | Msa0697690 | 0.811732 | 6.044131e-51 | -8.615850e-47 |
| Msa0687630 | Msa0697690 | 0.828382 | 9.272932e-55 | -8.615850e-47 |
| Msa0697400 | Msa0697690 | 0.825914 | 3.615219e-54 | -8.615850e-47 |
| Msa0697690 | Msa0699690 | 0.808624 | 2.826632e-50 | -8.615850e-47 |
| Msa0697690 | Msa0713460 | 0.813754 | 2.180619e-51 | -8.615850e-47 |
| Msa0697690 | Msa0734960 | 0.810257 | 1.261122e-50 | -8.615850e-47 |
| Msa0697690 | Msa0735620 | -0.805345 | 1.396235e-49 | -8.615850e-47 |
| Msa0697690 | Msa0743800 | 0.801550 | 8.539972e-49 | -8.615850e-47 |
| Msa0697690 | Msa0755340 | 0.808002 | 3.836177e-50 | -8.615850e-47 |
| Msa0697690 | Msa0797120 | 0.807294 | 5.422907e-50 | -8.615850e-47 |
| Msa0697690 | Msa0824640 | 0.801238 | 9.892770e-49 | -8.615850e-47 |
| Msa0697690 | Msa0852730 | 0.809655 | 1.699292e-50 | -8.615850e-47 |
| Msa0697690 | Msa0855160 | -0.807096 | 5.973874e-50 | -8.615850e-47 |
| Msa0697690 | Msa0863370 | 0.811331 | 7.385300e-51 | -8.615850e-47 |
| Msa0697690 | Msa0864010 | 0.802898 | 4.507944e-49 | -8.615850e-47 |
| Msa0697690 | Msa0900630 | 0.802798 | 4.728893e-49 | -8.615850e-47 |
| Msa0697690 | Msa0903330 | 0.810345 | 1.206892e-50 | -8.615850e-47 |
| Msa0697690 | Msa0931950 | 0.810187 | 1.305505e-50 | -8.615850e-47 |
| Msa0697690 | Msa0959010 | 0.812741 | 3.639504e-51 | -8.615850e-47 |
| Msa0697690 | Msa0967370 | 0.811125 | 8.185326e-51 | -8.615850e-47 |
| Msa0697690 | Msa0976330 | 0.820207 | 7.749972e-53 | -8.615850e-47 |
| Msa0697690 | Msa0980940 | 0.802213 | 6.240960e-49 | -8.615850e-47 |
| Msa0697690 | Msa0993530 | 0.809987 | 1.441737e-50 | -8.615850e-47 |
| Msa0697690 | Msa1040890 | 0.808767 | 2.634652e-50 | -8.615850e-47 |
| Msa0697690 | Msa1049510 | -0.814492 | 1.498581e-51 | -8.615850e-47 |
| Msa0697690 | Msa1058760 | 0.822002 | 2.989757e-53 | -8.615850e-47 |
| Msa0697690 | Msa1126770 | 0.800345 | 1.505386e-48 | -8.615850e-47 |
| Msa0697690 | Msa1150970 | 0.804949 | 1.690101e-49 | -8.615850e-47 |
| Msa0697690 | Msa1174100 | 0.840781 | 7.070062e-58 | -8.615850e-47 |
| Msa0697690 | Msa1183660 | 0.805462 | 1.319493e-49 | -8.615850e-47 |
| Msa0697690 | Msa1184370 | 0.819535 | 1.103820e-52 | -8.615850e-47 |
| Msa0697690 | Msa1201830 | 0.815277 | 1.004025e-51 | -8.615850e-47 |
| Msa0697690 | Msa1227690 | 0.818230 | 2.184245e-52 | -8.615850e-47 |
| Msa0697690 | Msa1228890 | 0.805767 | 1.138439e-49 | -8.615850e-47 |
| Msa0697690 | Msa1246530 | -0.801648 | 8.155206e-49 | -8.615850e-47 |
| Msa0697690 | Msa1254710 | 0.816137 | 6.458042e-52 | -8.615850e-47 |
| Msa0697690 | Msa1280560 | 0.836402 | 9.557103e-57 | -8.615850e-47 |
| Msa0697690 | Msa1294840 | 0.835292 | 1.826230e-56 | -8.615850e-47 |
| Msa0697690 | Msa1299360 | 0.828007 | 1.141911e-54 | -8.615850e-47 |
| Msa0697690 | Msa1344850 | 0.813094 | 3.045894e-51 | -8.615850e-47 |
| Msa0697690 | Msa1362510 | 0.817388 | 3.384064e-52 | -8.615850e-47 |
| Msa0697690 | Msa1365150 | 0.858102 | 1.037204e-62 | -8.615850e-47 |
| Msa0697690 | Msa1365200 | 0.805941 | 1.046765e-49 | -8.615850e-47 |
| Msa0697690 | Msa1367880 | 0.836968 | 6.855663e-57 | -8.615850e-47 |
| Msa0697690 | Msa1387190 | 0.817903 | 2.589842e-52 | -8.615850e-47 |
| Msa0697690 | Msa1390310 | 0.815570 | 8.637991e-52 | -8.615850e-47 |
| Msa0697690 | Msa1397050 | 0.814149 | 1.784288e-51 | -8.615850e-47 |
| Msa0697690 | Msa1397940 | 0.809316 | 2.009498e-50 | -8.615850e-47 |
| Msa0697690 | Msa1398860 | 0.801419 | 9.087040e-49 | -8.615850e-47 |
| Msa0697690 | Msa1404190 | 0.825858 | 3.726431e-54 | -8.615850e-47 |
| Msa0697690 | Msa1416390 | 0.813598 | 2.360245e-51 | -8.615850e-47 |
| Msa0697690 | Msa1438450 | 0.814566 | 1.443338e-51 | -8.615850e-47 |
| Msa0697690 | Msa1438640 | 0.845792 | 3.255064e-59 | -8.615850e-47 |
| Msa0697690 | Msa1466460 | 0.811942 | 5.438799e-51 | -8.615850e-47 |
| Msa0134130 | Msa0697690 | 0.805971 | 1.031596e-49 | -8.615850e-47 |
| Msa0140300 | Msa0697690 | 0.814069 | 1.858541e-51 | -8.615850e-47 |
| Msa0143080 | Msa0697690 | 0.824486 | 7.865406e-54 | -8.615850e-47 |
| Msa0172350 | Msa0697690 | 0.815363 | 9.605391e-52 | -8.615850e-47 |
| Msa0202830 | Msa0697690 | 0.805345 | 1.396235e-49 | -8.615850e-47 |
| Msa0205850 | Msa0697690 | 0.807440 | 5.049570e-50 | -8.615850e-47 |
| Msa0236980 | Msa0697690 | 0.821267 | 4.421067e-53 | -8.615850e-47 |
| Msa0388720 | Msa0697690 | 0.803805 | 2.926018e-49 | -8.615850e-47 |
| Msa0403190 | Msa0697690 | 0.823997 | 1.024724e-53 | -8.615850e-47 |
| Msa0413450 | Msa0697690 | 0.832256 | 1.048852e-55 | -8.615850e-47 |
| Msa0426330 | Msa0697690 | 0.816271 | 6.027869e-52 | -8.615850e-47 |
| Msa0448750 | Msa0697690 | 0.805389 | 1.366817e-49 | -8.615850e-47 |
| Msa0449820 | Msa0697690 | 0.818133 | 2.297431e-52 | -8.615850e-47 |
| Msa0469910 | Msa0697690 | -0.823212 | 1.564529e-53 | -8.615850e-47 |
| Msa0239450 | Msa0697690 | 0.821280 | 4.390228e-53 | -8.615850e-47 |
| Msa0259560 | Msa0697690 | 0.854587 | 1.114911e-61 | -8.615850e-47 |
| Msa0260240 | Msa0697690 | 0.804908 | 1.723523e-49 | -8.615850e-47 |
| Msa0260280 | Msa0697690 | 0.810400 | 1.174429e-50 | -8.615850e-47 |
| Msa0267760 | Msa0697690 | 0.807278 | 5.464832e-50 | -8.615850e-47 |
| Msa0281360 | Msa0697690 | 0.813932 | 1.992101e-51 | -8.615850e-47 |
| Msa0304260 | Msa0697690 | 0.800044 | 1.733029e-48 | -8.615850e-47 |
| Msa0305640 | Msa0697690 | 0.816993 | 4.152275e-52 | -8.615850e-47 |
| Msa0321190 | Msa0697690 | 0.801861 | 7.371694e-49 | -8.615850e-47 |
| Msa0322590 | Msa0697690 | 0.819664 | 1.031215e-52 | -8.615850e-47 |
| Msa0328210 | Msa0697690 | 0.822080 | 2.868849e-53 | -8.615850e-47 |
| Msa0497420 | Msa0697690 | 0.827138 | 1.846463e-54 | -8.615850e-47 |
| Msa0505150 | Msa0697690 | 0.810655 | 1.034776e-50 | -8.615850e-47 |
| Msa0513440 | Msa0697690 | 0.815393 | 9.460903e-52 | -8.615850e-47 |
| Msa0552810 | Msa0697690 | 0.807617 | 4.632230e-50 | -8.615850e-47 |
| Msa0560470 | Msa0697690 | 0.919250 | 5.690770e-87 | -8.615850e-47 |
| Msa0585900 | Msa0697690 | 0.801823 | 7.505473e-49 | -8.615850e-47 |
| Msa0590680 | Msa0697690 | 0.821084 | 4.871986e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0697690 | MtrunA17_Chr4g0050521 | 98.226 | 451 | 7 | 1 | 1 | 450 | 1 | 451 | 0.0 | 914 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0697690 | AT2G13840.1 | 62.381 | 420 | 152 | 3 | 31 | 448 | 17 | 432 | 0.0 | 539 |
Find 121 sgRNAs with CRISPR-Local
Find 298 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATCTCTTGTTGATGATTT+TGG | 0.031208 | 4_4:-67753780 | Msa0697690:CDS |
| CAAACCTTGTAATTGTTTCT+AGG | 0.169257 | 4_4:+67750559 | None:intergenic |
| AACAAATTTAACAATAAAAT+TGG | 0.172762 | 4_4:+67750295 | None:intergenic |
| TTGATCATTGTTTACCTCTT+TGG | 0.224468 | 4_4:-67750482 | Msa0697690:CDS |
| CCTTACAGTGAAGGGATCTT+TGG | 0.253884 | 4_4:+67754137 | None:intergenic |
| CACTTCCCAGTTCAGATTCA+TGG | 0.274753 | 4_4:+67750694 | None:intergenic |
| CCTCATTTCTCTTCATATAT+AGG | 0.280119 | 4_4:-67754101 | Msa0697690:five_prime_UTR |
| CTATATGGTGCAATGCTATA+AGG | 0.299389 | 4_4:-67750623 | Msa0697690:CDS |
| CAATGCTATAAGGGAATTAT+TGG | 0.306066 | 4_4:-67750613 | Msa0697690:CDS |
| GATGACCCATGAACAAGTTT+TGG | 0.306632 | 4_4:-67753859 | Msa0697690:CDS |
| CGGGCTACATGGAGCCTTCC+GGG | 0.310253 | 4_4:+67752280 | None:intergenic |
| GTAGAATCGGCTCGCAAATA+TGG | 0.314220 | 4_4:-67753001 | Msa0697690:CDS |
| AAAAGTGATGGAAGGCTTGC+AGG | 0.316738 | 4_4:-67751941 | Msa0697690:intron |
| TTAAGGTAGCTAGGCCTATA+TGG | 0.320672 | 4_4:-67750638 | Msa0697690:CDS |
| CTAGAAACAATTACAAGGTT+TGG | 0.330990 | 4_4:-67750558 | Msa0697690:CDS |
| TAAAAGCCAAAACTTGTTCA+TGG | 0.361148 | 4_4:+67753853 | None:intergenic |
| TGTAACTGAATGGGTTTCAT+TGG | 0.367786 | 4_4:-67753826 | Msa0697690:CDS |
| TAGAAACAATTACAAGGTTT+GGG | 0.368543 | 4_4:-67750557 | Msa0697690:CDS |
| TTGCCGTTCTGGCTCATCCA+TGG | 0.379810 | 4_4:-67752033 | Msa0697690:CDS |
| GAGCATGTTTGTAGGATTGC+AGG | 0.382471 | 4_4:-67752316 | Msa0697690:CDS |
| TTCCAACGTTTCTACCAGTC+AGG | 0.399060 | 4_4:-67750406 | Msa0697690:CDS |
| TTAGCATATTACAGCAGTAT+TGG | 0.401822 | 4_4:-67752454 | Msa0697690:CDS |
| GCGATACCATCTCCCATAAC+TGG | 0.402455 | 4_4:+67753969 | None:intergenic |
| AGGACACCATGAATCTGAAC+TGG | 0.403868 | 4_4:-67750700 | Msa0697690:CDS |
| GATGAAGTAGCGAAAGAAGA+AGG | 0.406465 | 4_4:+67753798 | None:intergenic |
| TAATATGCTAAAACGTGAAC+AGG | 0.417023 | 4_4:+67752466 | None:intergenic |
| AAGGGTGAGTGAGTTTGTTA+CGG | 0.421407 | 4_4:+67754063 | None:intergenic |
| TTAAATGGGAGCATGTTTGT+AGG | 0.422997 | 4_4:-67752324 | Msa0697690:CDS |
| CCAAAGATCCCTTCACTGTA+AGG | 0.423262 | 4_4:-67754137 | Msa0697690:five_prime_UTR |
| TTAAAAGAAGCAGGCCTTCA+TGG | 0.425114 | 4_4:-67751977 | Msa0697690:CDS |
| CTTATAGCATTGCACCATAT+AGG | 0.426022 | 4_4:+67750624 | None:intergenic |
| AACCTGCTAATAATAGCAAC+AGG | 0.426654 | 4_4:+67751998 | None:intergenic |
| CAATTCAAACAAGAGCAATA+AGG | 0.426821 | 4_4:-67753931 | Msa0697690:CDS |
| GATGGAAAATGAAGAGTTTG+AGG | 0.430917 | 4_4:-67750445 | Msa0697690:CDS |
| ACGGGCTACATGGAGCCTTC+CGG | 0.436221 | 4_4:+67752279 | None:intergenic |
| CAAATCCTTTCCACAATACA+AGG | 0.438699 | 4_4:+67750506 | None:intergenic |
| TATATGGTGCAATGCTATAA+GGG | 0.441866 | 4_4:-67750622 | Msa0697690:CDS |
| TTCTAAGTCTCTATGAGAAC+CGG | 0.445315 | 4_4:+67750375 | None:intergenic |
| AAGTCATGCAAAACTAGTAC+TGG | 0.451309 | 4_4:+67750663 | None:intergenic |
| CAACCATAGCACGGGCTACA+TGG | 0.457224 | 4_4:+67752269 | None:intergenic |
| CGAGCCGATTCTACAGCCTC+GGG | 0.458504 | 4_4:+67753010 | None:intergenic |
| AGGGTGAGTGAGTTTGTTAC+GGG | 0.459051 | 4_4:+67754064 | None:intergenic |
| GCTCTCTCAACAACCTTAGA+AGG | 0.460070 | 4_4:+67753672 | None:intergenic |
| TCTGACAGATCACGATACTA+TGG | 0.460637 | 4_4:-67753041 | Msa0697690:CDS |
| ATCCTGTTGCTATTATTAGC+AGG | 0.470901 | 4_4:-67752000 | Msa0697690:CDS |
| TGCCGTTCTGGCTCATCCAT+GGG | 0.473635 | 4_4:-67752032 | Msa0697690:CDS |
| CATCCCCGAGGCTGTAGAAT+CGG | 0.477174 | 4_4:-67753014 | Msa0697690:CDS |
| ATGACTTTCTTAAGGTAGCT+AGG | 0.478259 | 4_4:-67750647 | Msa0697690:CDS |
| ATTAGCAGGTTAAAAGAAGC+AGG | 0.481000 | 4_4:-67751986 | Msa0697690:CDS |
| TTTATTGCTTCCTCCACCAC+AGG | 0.488429 | 4_4:+67752079 | None:intergenic |
| AACCGGAGTTCCTCCCTGAC+TGG | 0.502354 | 4_4:+67750392 | None:intergenic |
| AAAAGCCAAAACTTGTTCAT+GGG | 0.503915 | 4_4:+67753854 | None:intergenic |
| TAAAACTTACGCCGTTCATG+TGG | 0.507053 | 4_4:+67753649 | None:intergenic |
| CTCAATCCAGTTATGGGAGA+TGG | 0.507268 | 4_4:-67753975 | Msa0697690:exon |
| TTGGTTAAGTAGCCAAGAGA+TGG | 0.514042 | 4_4:-67750463 | Msa0697690:CDS |
| TATTGGACCATCAAAATTTG+AGG | 0.515732 | 4_4:-67752437 | Msa0697690:CDS |
| GGGAAGTGAACCTGTGGTGG+AGG | 0.520171 | 4_4:-67752089 | Msa0697690:CDS |
| ATGAAGTAGCGAAAGAAGAA+GGG | 0.523100 | 4_4:+67753799 | None:intergenic |
| GAAGAGAAATGAGGAAGGGT+AGG | 0.523647 | 4_4:+67754110 | None:intergenic |
| TGTAGACCTCCATCCCATGA+AGG | 0.525586 | 4_4:+67751963 | None:intergenic |
| TAAAAGAAGCAGGCCTTCAT+GGG | 0.526089 | 4_4:-67751976 | Msa0697690:CDS |
| TTCACCCTTGTATTGTGGAA+AGG | 0.529199 | 4_4:-67750511 | Msa0697690:CDS |
| ATTGGAGGGTCAGACTATCA+TGG | 0.530154 | 4_4:-67750729 | Msa0697690:CDS |
| GCGAGCCGATTCTACAGCCT+CGG | 0.530385 | 4_4:+67753009 | None:intergenic |
| GCCCGTGCTATGGTTGAAGC+AGG | 0.533657 | 4_4:-67752262 | Msa0697690:CDS |
| GCTCCATGTAGCCCGTGCTA+TGG | 0.537065 | 4_4:-67752272 | Msa0697690:CDS |
| AACGTTGGAAAGCTTCAACT+TGG | 0.537287 | 4_4:+67750419 | None:intergenic |
| CTCTTCATATATAGGTTCAG+AGG | 0.537326 | 4_4:-67754093 | Msa0697690:five_prime_UTR |
| CAGGGGAAGTGAACCTGTGG+TGG | 0.538470 | 4_4:-67752092 | Msa0697690:CDS |
| AACAATAATATCAGAAACGT+TGG | 0.540630 | 4_4:+67750208 | None:intergenic |
| TACCAGTCAGGGAGGAACTC+CGG | 0.543925 | 4_4:-67750394 | Msa0697690:CDS |
| AGAAGCAGGCCTTCATGGGA+TGG | 0.546814 | 4_4:-67751972 | Msa0697690:CDS |
| GGAGGTTCACCCTTGTATTG+TGG | 0.547408 | 4_4:-67750516 | Msa0697690:CDS |
| AAGAAGAATAAGAACAGAGG+TGG | 0.548356 | 4_4:-67753894 | Msa0697690:CDS |
| CTAACCTAGAAACAATTACA+AGG | 0.549045 | 4_4:-67750563 | Msa0697690:CDS |
| GCAGGCAACGGAGTTGCTCC+CGG | 0.551611 | 4_4:-67752298 | Msa0697690:CDS |
| ATTGTACTAACTTCAACACC+TGG | 0.552254 | 4_4:+67752965 | None:intergenic |
| GAAGGGATCTTTGGAGTCAC+AGG | 0.552421 | 4_4:+67754146 | None:intergenic |
| GTTTCTAGGTTAGTATTAGA+CGG | 0.556827 | 4_4:+67750573 | None:intergenic |
| CAATATTACTTGGAGTAAGC+AGG | 0.557337 | 4_4:+67752187 | None:intergenic |
| GGGTCAGACTATCATGGAAG+AGG | 0.560598 | 4_4:-67750723 | Msa0697690:CDS |
| AAGAAGAAGAATAAGAACAG+AGG | 0.572930 | 4_4:-67753897 | Msa0697690:CDS |
| ATGGAGGTCTACAAAAGTGA+TGG | 0.578050 | 4_4:-67751953 | Msa0697690:CDS |
| TCCCTGACTGGTAGAAACGT+TGG | 0.579843 | 4_4:+67750404 | None:intergenic |
| ACCTGCTTCAACCATAGCAC+GGG | 0.581188 | 4_4:+67752261 | None:intergenic |
| AACCTGCTTCAACCATAGCA+CGG | 0.582016 | 4_4:+67752260 | None:intergenic |
| TTTGGGGTGCAGAAGCCTGT+TGG | 0.583868 | 4_4:-67753762 | Msa0697690:CDS |
| GTTTGTAGGATTGCAGGCAA+CGG | 0.584225 | 4_4:-67752310 | Msa0697690:CDS |
| TCCAACGTTTCTACCAGTCA+GGG | 0.584764 | 4_4:-67750405 | Msa0697690:CDS |
| TATGGCATTAAGATAATCCC+AGG | 0.585730 | 4_4:-67752983 | Msa0697690:CDS |
| GTTGAGAGAGCCCACATGAA+CGG | 0.586954 | 4_4:-67753660 | Msa0697690:CDS |
| CCTATATATGAAGAGAAATG+AGG | 0.589138 | 4_4:+67754101 | None:intergenic |
| AGTGACCTGGCTGATGCCTA+CGG | 0.590587 | 4_4:-67750762 | Msa0697690:CDS |
| CAAAGATCCCTTCACTGTAA+GGG | 0.590742 | 4_4:-67754136 | Msa0697690:five_prime_UTR |
| TGTCACTCTAAATGCAGTGA+TGG | 0.597504 | 4_4:-67753705 | Msa0697690:CDS |
| TGCCCATGGATGAGCCAGAA+CGG | 0.598033 | 4_4:+67752030 | None:intergenic |
| ACAGATCACGATACTATGGC+AGG | 0.600390 | 4_4:-67753037 | Msa0697690:CDS |
| GCAACGGAGTTGCTCCCGGA+AGG | 0.600663 | 4_4:-67752294 | Msa0697690:CDS |
| TAGGTTACCCTTACAGTGAA+GGG | 0.603982 | 4_4:+67754129 | None:intergenic |
| AAAGGCCGTAGGCATCAGCC+AGG | 0.611891 | 4_4:+67750757 | None:intergenic |
| GTAGGTTACCCTTACAGTGA+AGG | 0.613045 | 4_4:+67754128 | None:intergenic |
| TATATGAAGAGAAATGAGGA+AGG | 0.613178 | 4_4:+67754105 | None:intergenic |
| ATTATTGGAGTGTTATGCTG+AGG | 0.625175 | 4_4:-67750598 | Msa0697690:CDS |
| ATATGAAGAGAAATGAGGAA+GGG | 0.626865 | 4_4:+67754106 | None:intergenic |
| AGCAGGCCTTCATGGGATGG+AGG | 0.629146 | 4_4:-67751969 | Msa0697690:CDS |
| TCAGACTATCATGGAAGAGG+AGG | 0.633037 | 4_4:-67750720 | Msa0697690:CDS |
| TGGTGGAGACACTGAAGCAG+AGG | 0.633552 | 4_4:-67752491 | Msa0697690:CDS |
| CATGCAAAACTAGTACTGGA+AGG | 0.634426 | 4_4:+67750667 | None:intergenic |
| AGGTCTACAAAAGTGATGGA+AGG | 0.642912 | 4_4:-67751949 | Msa0697690:CDS |
| TTGTACTAACTTCAACACCT+GGG | 0.643477 | 4_4:+67752966 | None:intergenic |
| TCTTGGCTACTTAACCAAAG+AGG | 0.654559 | 4_4:+67750468 | None:intergenic |
| AAAACTTACGCCGTTCATGT+GGG | 0.655200 | 4_4:+67753650 | None:intergenic |
| TTATCTTCGAGCAAAGAACA+TGG | 0.660434 | 4_4:-67752377 | Msa0697690:CDS |
| TTTCAGGGGAAGTGAACCTG+TGG | 0.661634 | 4_4:-67752095 | Msa0697690:intron |
| GTATGCAGCATATAGTGACC+TGG | 0.671490 | 4_4:-67750775 | Msa0697690:intron |
| GGACACCATGAATCTGAACT+GGG | 0.676928 | 4_4:-67750699 | Msa0697690:CDS |
| AAATCCTTTCCACAATACAA+GGG | 0.689638 | 4_4:+67750507 | None:intergenic |
| TACTATGGCAGGCATCCCCG+AGG | 0.703124 | 4_4:-67753026 | Msa0697690:CDS |
| AACGTTTCTACCAGTCAGGG+AGG | 0.703221 | 4_4:-67750402 | Msa0697690:CDS |
| GAGCCGATTCTACAGCCTCG+GGG | 0.740138 | 4_4:+67753011 | None:intergenic |
| AAAATGATTTGTGATACTGG+GGG | 0.788482 | 4_4:-67752058 | Msa0697690:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTGTTTGAATTATTTA+AGG | - | chr4_4:67750743-67750762 | Msa0697690:CDS | 10.0% |
| !!! | ATTATGGTTATTATTTTATA+AGG | - | chr4_4:67751041-67751060 | Msa0697690:intron | 10.0% |
| !! | AACAAATTTAACAATAAAAT+TGG | + | chr4_4:67754034-67754053 | None:intergenic | 10.0% |
| !!! | AATTTTATTGTTAAATTTGT+TGG | - | chr4_4:67754033-67754052 | Msa0697690:five_prime_UTR | 10.0% |
| !!! | AAAAAAGATTGAATTTTTTG+GGG | + | chr4_4:67750306-67750325 | None:intergenic | 15.0% |
| !!! | GAAAAAAGATTGAATTTTTT+GGG | + | chr4_4:67750307-67750326 | None:intergenic | 15.0% |
| !!! | AGAAAAAAGATTGAATTTTT+TGG | + | chr4_4:67750308-67750327 | None:intergenic | 15.0% |
| !!! | TTTTAAATTTGTAACTGAAT+GGG | - | chr4_4:67750491-67750510 | Msa0697690:CDS | 15.0% |
| !!! | TACAGTTTTTTTGTTTTATT+TGG | + | chr4_4:67750799-67750818 | None:intergenic | 15.0% |
| !! | AATATGTAATGAATATAAGA+AGG | + | chr4_4:67750921-67750940 | None:intergenic | 15.0% |
| !! | TTAATTAGAATCAATTATGA+AGG | - | chr4_4:67751696-67751715 | Msa0697690:intron | 15.0% |
| !!! | ATTTTTCTTAACTACAAAAA+TGG | + | chr4_4:67752194-67752213 | None:intergenic | 15.0% |
| !!! | ATTTTTGTAGTTAAGAAAAA+TGG | - | chr4_4:67752193-67752212 | Msa0697690:intron | 15.0% |
| !!! | CTTTTAAATTTGTAACTGAA+TGG | - | chr4_4:67750490-67750509 | Msa0697690:CDS | 20.0% |
| !!! | TTAGTACAATATTTTATCCA+AGG | - | chr4_4:67751374-67751393 | Msa0697690:intron | 20.0% |
| !!! | TATTTTGAATGAATCAATTC+TGG | - | chr4_4:67751545-67751564 | Msa0697690:intron | 20.0% |
| !!! | AATTAACTTGAACTTGAAAT+TGG | + | chr4_4:67751682-67751701 | None:intergenic | 20.0% |
| !!! | ATAAGTTTTTGTCAAACATA+AGG | - | chr4_4:67751918-67751937 | Msa0697690:intron | 20.0% |
| !!! | TAAGTTTTTGTCAAACATAA+GGG | - | chr4_4:67751919-67751938 | Msa0697690:intron | 20.0% |
| !!! | ATAAAAATGATTTGTGATAC+TGG | - | chr4_4:67752265-67752284 | Msa0697690:CDS | 20.0% |
| !!! | TAAAAATGATTTGTGATACT+GGG | - | chr4_4:67752266-67752285 | Msa0697690:CDS | 20.0% |
| !! | ATTGTTTATGTTTCCAAAAT+CGG | + | chr4_4:67753299-67753318 | None:intergenic | 20.0% |
| !!! | TTTTTTGGGGTAATTTTCTT+AGG | + | chr4_4:67750293-67750312 | None:intergenic | 25.0% |
| !!! | TTTTGTTTTTTGATTGTCGT+AGG | - | chr4_4:67750707-67750726 | Msa0697690:CDS | 25.0% |
| ! | ATGCGTTACAATCTAAATTA+CGG | - | chr4_4:67750945-67750964 | Msa0697690:intron | 25.0% |
| !! | TGTGCATCATTTTATGATTA+TGG | - | chr4_4:67751025-67751044 | Msa0697690:intron | 25.0% |
| ! | AGGATAATGAAGTCAATTTA+AGG | - | chr4_4:67751061-67751080 | Msa0697690:intron | 25.0% |
| ! | TAATGAAGTCAATTTAAGGA+TGG | - | chr4_4:67751065-67751084 | Msa0697690:intron | 25.0% |
| ! | GAAAATTAACTGTATTGTAG+AGG | - | chr4_4:67751099-67751118 | Msa0697690:intron | 25.0% |
| !! | TTCCAATGAATTCTAAAAGA+TGG | - | chr4_4:67751157-67751176 | Msa0697690:intron | 25.0% |
| !!! | AACCATCTTTTAGAATTCAT+TGG | + | chr4_4:67751162-67751181 | None:intergenic | 25.0% |
| !! | ATTGATTTCCTTTGTAGTTT+AGG | - | chr4_4:67751210-67751229 | Msa0697690:intron | 25.0% |
| ! | CTTAAGTTTGAAAATTACCT+TGG | + | chr4_4:67751394-67751413 | None:intergenic | 25.0% |
| ! | GGACACATTTACATAAAATT+AGG | - | chr4_4:67751602-67751621 | Msa0697690:intron | 25.0% |
| !! | CAATTGATTTAGTGTATGTT+TGG | + | chr4_4:67751758-67751777 | None:intergenic | 25.0% |
| ! | AAAGCTTAACAAGCTAAAAA+TGG | - | chr4_4:67751976-67751995 | Msa0697690:CDS | 25.0% |
| !! | TTAAGCATCTTGTATTTTCA+GGG | - | chr4_4:67752216-67752235 | Msa0697690:CDS | 25.0% |
| !! | AAAAATGATTTGTGATACTG+GGG | - | chr4_4:67752267-67752286 | Msa0697690:CDS | 25.0% |
| ! | TCTCATAAAAACCAAAACTA+AGG | - | chr4_4:67752466-67752485 | Msa0697690:CDS | 25.0% |
| ! | TCACTAAATCTTACAATTTG+AGG | + | chr4_4:67752645-67752664 | None:intergenic | 25.0% |
| !!! | CGATATAATAGTTTTAAACC+TGG | - | chr4_4:67752713-67752732 | Msa0697690:intron | 25.0% |
| ! | AATCGTCACTAAACAAAATT+GGG | - | chr4_4:67752759-67752778 | Msa0697690:intron | 25.0% |
| ! | TGGATGATAATTAGATTTGA+TGG | - | chr4_4:67752959-67752978 | Msa0697690:CDS | 25.0% |
| ! | GGATGATAATTAGATTTGAT+GGG | - | chr4_4:67752960-67752979 | Msa0697690:CDS | 25.0% |
| ! | AATCACTGTGATTTCATATA+TGG | + | chr4_4:67753087-67753106 | None:intergenic | 25.0% |
| !! | AAGCGATAATTTTCAATACT+CGG | - | chr4_4:67753183-67753202 | Msa0697690:intron | 25.0% |
| !!! | CATAAACAATCGTTATTTTG+CGG | - | chr4_4:67753309-67753328 | Msa0697690:intron | 25.0% |
| !!! | TGATCTTGCTTGTTAATTTT+TGG | - | chr4_4:67753529-67753548 | Msa0697690:intron | 25.0% |
| ! | TAGAAACAATTACAAGGTTT+GGG | - | chr4_4:67753769-67753788 | Msa0697690:CDS | 25.0% |
| ! | AACAATAATATCAGAAACGT+TGG | + | chr4_4:67754121-67754140 | None:intergenic | 25.0% |
| ATATGAAGAGAAATGAGGAA+GGG | + | chr4_4:67750223-67750242 | None:intergenic | 30.0% | |
| TATATGAAGAGAAATGAGGA+AGG | + | chr4_4:67750224-67750243 | None:intergenic | 30.0% | |
| CCTATATATGAAGAGAAATG+AGG | + | chr4_4:67750228-67750247 | None:intergenic | 30.0% | |
| CCTCATTTCTCTTCATATAT+AGG | - | chr4_4:67750225-67750244 | Msa0697690:three_prime_UTR | 30.0% | |
| ! | GTAATTTTCTTAGGTCGTAA+GGG | + | chr4_4:67750284-67750303 | None:intergenic | 30.0% |
| AAAAAGCTCAATCCAGTTAT+GGG | - | chr4_4:67750345-67750364 | Msa0697690:three_prime_UTR | 30.0% | |
| CAATTCAAACAAGAGCAATA+AGG | - | chr4_4:67750395-67750414 | Msa0697690:CDS | 30.0% | |
| AAGAAGAAGAATAAGAACAG+AGG | - | chr4_4:67750429-67750448 | Msa0697690:CDS | 30.0% | |
| ! | AAAAGCCAAAACTTGTTCAT+GGG | + | chr4_4:67750475-67750494 | None:intergenic | 30.0% |
| ! | TAAAAGCCAAAACTTGTTCA+TGG | + | chr4_4:67750476-67750495 | None:intergenic | 30.0% |
| !!! | TCATCTCTTGTTGATGATTT+TGG | - | chr4_4:67750546-67750565 | Msa0697690:CDS | 30.0% |
| !!! | CATCTCTTGTTGATGATTTT+GGG | - | chr4_4:67750547-67750566 | Msa0697690:CDS | 30.0% |
| !!! | ATCTCTTGTTGATGATTTTG+GGG | - | chr4_4:67750548-67750567 | Msa0697690:CDS | 30.0% |
| AACACTTAAAATCGTGGTTA+AGG | - | chr4_4:67750833-67750852 | Msa0697690:intron | 30.0% | |
| ! | TTCTAAAAGATGGTTGTCTA+AGG | - | chr4_4:67751167-67751186 | Msa0697690:intron | 30.0% |
| AAAATGAGCCTAAACTACAA+AGG | + | chr4_4:67751221-67751240 | None:intergenic | 30.0% | |
| TTTCACCTGTTATGAACAAA+CGG | + | chr4_4:67751257-67751276 | None:intergenic | 30.0% | |
| ! | TTGATGCTTGTTGATTGAAT+TGG | - | chr4_4:67751418-67751437 | Msa0697690:intron | 30.0% |
| CAATTCTGGTATAAATGAGT+TGG | - | chr4_4:67751559-67751578 | Msa0697690:intron | 30.0% | |
| ! | TAAATGAGTTGGATGTAATG+TGG | - | chr4_4:67751570-67751589 | Msa0697690:intron | 30.0% |
| ! | TAGGTTGAACGATAAATTTG+AGG | - | chr4_4:67751621-67751640 | Msa0697690:intron | 30.0% |
| !!! | AGTCCTTTTTTTTTCTCCAT+TGG | - | chr4_4:67751785-67751804 | Msa0697690:intron | 30.0% |
| GAACCAATGGAGAAAAAAAA+AGG | + | chr4_4:67751791-67751810 | None:intergenic | 30.0% | |
| TAATATGCTAAAACGTGAAC+AGG | + | chr4_4:67751863-67751882 | None:intergenic | 30.0% | |
| TTAGCATATTACAGCAGTAT+TGG | - | chr4_4:67751872-67751891 | Msa0697690:intron | 30.0% | |
| TATTGGACCATCAAAATTTG+AGG | - | chr4_4:67751889-67751908 | Msa0697690:intron | 30.0% | |
| ! | TTTTTGTCAAACATAAGGGA+CGG | - | chr4_4:67751923-67751942 | Msa0697690:intron | 30.0% |
| AGCTAAAAATGGCTCTTAAA+TGG | - | chr4_4:67751987-67752006 | Msa0697690:CDS | 30.0% | |
| GCTAAAAATGGCTCTTAAAT+GGG | - | chr4_4:67751988-67752007 | Msa0697690:CDS | 30.0% | |
| ! | GTTAAGCATCTTGTATTTTC+AGG | - | chr4_4:67752215-67752234 | Msa0697690:CDS | 30.0% |
| ! | TAAGCATCTTGTATTTTCAG+GGG | - | chr4_4:67752217-67752236 | Msa0697690:CDS | 30.0% |
| ! | AAAATGATTTGTGATACTGG+GGG | - | chr4_4:67752268-67752287 | Msa0697690:CDS | 30.0% |
| CATAAAAACCAAAACTAAGG+TGG | - | chr4_4:67752469-67752488 | Msa0697690:CDS | 30.0% | |
| ACTTTGTCAATTGTCATACA+AGG | - | chr4_4:67752496-67752515 | Msa0697690:intron | 30.0% | |
| TGTGATGTTATCAAATCATC+AGG | - | chr4_4:67752590-67752609 | Msa0697690:intron | 30.0% | |
| CAATCGTCACTAAACAAAAT+TGG | - | chr4_4:67752758-67752777 | Msa0697690:intron | 30.0% | |
| ! | AAGCAAACTACCATTTGTTA+TGG | + | chr4_4:67752903-67752922 | None:intergenic | 30.0% |
| ATCGCTTCACTAATATGATT+AGG | + | chr4_4:67753170-67753189 | None:intergenic | 30.0% | |
| ! | AATTTTCAATACTCGGAATC+AGG | - | chr4_4:67753190-67753209 | Msa0697690:intron | 30.0% |
| ! | ATTTTCAATACTCGGAATCA+GGG | - | chr4_4:67753191-67753210 | Msa0697690:intron | 30.0% |
| TTTGATATTGCAATGAAACG+TGG | - | chr4_4:67753258-67753277 | Msa0697690:intron | 30.0% | |
| TGTTGTCACAATTGTGTAAT+AGG | - | chr4_4:67753462-67753481 | Msa0697690:intron | 30.0% | |
| ! | AGTTTTGCATGACTTTCTTA+AGG | - | chr4_4:67753671-67753690 | Msa0697690:CDS | 30.0% |
| TATATGGTGCAATGCTATAA+GGG | - | chr4_4:67753704-67753723 | Msa0697690:CDS | 30.0% | |
| CAATGCTATAAGGGAATTAT+TGG | - | chr4_4:67753713-67753732 | Msa0697690:CDS | 30.0% | |
| ! | GTTTCTAGGTTAGTATTAGA+CGG | + | chr4_4:67753756-67753775 | None:intergenic | 30.0% |
| CTAACCTAGAAACAATTACA+AGG | - | chr4_4:67753763-67753782 | Msa0697690:CDS | 30.0% | |
| ! | CAAACCTTGTAATTGTTTCT+AGG | + | chr4_4:67753770-67753789 | None:intergenic | 30.0% |
| CTAGAAACAATTACAAGGTT+TGG | - | chr4_4:67753768-67753787 | Msa0697690:CDS | 30.0% | |
| AAATCCTTTCCACAATACAA+GGG | + | chr4_4:67753822-67753841 | None:intergenic | 30.0% | |
| TTGATCATTGTTTACCTCTT+TGG | - | chr4_4:67753844-67753863 | Msa0697690:CDS | 30.0% | |
| CTCTTCATATATAGGTTCAG+AGG | - | chr4_4:67750233-67750252 | Msa0697690:three_prime_UTR | 35.0% | |
| ! | GGTAATTTTCTTAGGTCGTA+AGG | + | chr4_4:67750285-67750304 | None:intergenic | 35.0% |
| CAAAAAGCTCAATCCAGTTA+TGG | - | chr4_4:67750344-67750363 | Msa0697690:three_prime_UTR | 35.0% | |
| AAGAAGAATAAGAACAGAGG+TGG | - | chr4_4:67750432-67750451 | Msa0697690:CDS | 35.0% | |
| ! | TGTAACTGAATGGGTTTCAT+TGG | - | chr4_4:67750500-67750519 | Msa0697690:CDS | 35.0% |
| ATGAAGTAGCGAAAGAAGAA+GGG | + | chr4_4:67750530-67750549 | None:intergenic | 35.0% | |
| AGCTTGAACACTTAAAATCG+TGG | - | chr4_4:67750827-67750846 | Msa0697690:intron | 35.0% | |
| ! | GTTAAGGACGTTTAAAACTG+TGG | - | chr4_4:67750849-67750868 | Msa0697690:intron | 35.0% |
| CTGTGGTTAATTGTATTCAG+AGG | - | chr4_4:67750866-67750885 | Msa0697690:intron | 35.0% | |
| GGTTAATTGTATTCAGAGGA+TGG | - | chr4_4:67750870-67750889 | Msa0697690:intron | 35.0% | |
| GCACATATTTCAAAGAGTTG+TGG | + | chr4_4:67751010-67751029 | None:intergenic | 35.0% | |
| AAGTCAATTTAAGGATGGTG+TGG | - | chr4_4:67751070-67751089 | Msa0697690:intron | 35.0% | |
| !!! | TCCATCTCCACTTATTTTAG+AGG | + | chr4_4:67751125-67751144 | None:intergenic | 35.0% |
| TGTTACCGTTTGTTCATAAC+AGG | - | chr4_4:67751249-67751268 | Msa0697690:intron | 35.0% | |
| TATGGCATTAAGATAATCCC+AGG | - | chr4_4:67751343-67751362 | Msa0697690:intron | 35.0% | |
| TTGTACTAACTTCAACACCT+GGG | + | chr4_4:67751363-67751382 | None:intergenic | 35.0% | |
| ATTGTACTAACTTCAACACC+TGG | + | chr4_4:67751364-67751383 | None:intergenic | 35.0% | |
| ! | TGTTGATTGAATTGGCACTT+TGG | - | chr4_4:67751426-67751445 | Msa0697690:intron | 35.0% |
| TAATTGTCCAAGTGCATGTT+TGG | - | chr4_4:67751503-67751522 | Msa0697690:intron | 35.0% | |
| GATGTAATGTGGTTTATGTC+TGG | - | chr4_4:67751581-67751600 | Msa0697690:intron | 35.0% | |
| AGGCTGAAATTCAATTGTAG+AGG | - | chr4_4:67751641-67751660 | Msa0697690:intron | 35.0% | |
| !!! | ATGTTTGGTTCCACTTTTTG+AGG | + | chr4_4:67751743-67751762 | None:intergenic | 35.0% |
| !! | TCTAGCTCCTCAAATTTTGA+TGG | + | chr4_4:67751899-67751918 | None:intergenic | 35.0% |
| TTATCTTCGAGCAAAGAACA+TGG | - | chr4_4:67751949-67751968 | Msa0697690:CDS | 35.0% | |
| ! | TTAAATGGGAGCATGTTTGT+AGG | - | chr4_4:67752002-67752021 | Msa0697690:CDS | 35.0% |
| ATCAAAAAGATATCGGGCAA+AGG | + | chr4_4:67752113-67752132 | None:intergenic | 35.0% | |
| ! | TTTGCCCGATATCTTTTTGA+TGG | - | chr4_4:67752112-67752131 | Msa0697690:intron | 35.0% |
| TCCACCATCAAAAAGATATC+GGG | + | chr4_4:67752119-67752138 | None:intergenic | 35.0% | |
| GTCCACCATCAAAAAGATAT+CGG | + | chr4_4:67752120-67752139 | None:intergenic | 35.0% | |
| CAATATTACTTGGAGTAAGC+AGG | + | chr4_4:67752142-67752161 | None:intergenic | 35.0% | |
| ATCTAGCAATCAACAAGTGA+AGG | + | chr4_4:67752170-67752189 | None:intergenic | 35.0% | |
| !!! | ACAGGATTTTTTAATGCCCA+TGG | + | chr4_4:67752313-67752332 | None:intergenic | 35.0% |
| ! | ATCCTGTTGCTATTATTAGC+AGG | - | chr4_4:67752326-67752345 | Msa0697690:CDS | 35.0% |
| AACCTGCTAATAATAGCAAC+AGG | + | chr4_4:67752331-67752350 | None:intergenic | 35.0% | |
| ATTAGCAGGTTAAAAGAAGC+AGG | - | chr4_4:67752340-67752359 | Msa0697690:CDS | 35.0% | |
| ! | AAGTAGATCCACCTTAGTTT+TGG | + | chr4_4:67752480-67752499 | None:intergenic | 35.0% |
| ATAACAAGTGAAGTGATGCA+TGG | - | chr4_4:67752686-67752705 | Msa0697690:intron | 35.0% | |
| !! | TAAGCTGTTTTGTCATTTCC+AGG | + | chr4_4:67752734-67752753 | None:intergenic | 35.0% |
| ! | GGTTATTACGTAAGTGTTGT+GGG | + | chr4_4:67752848-67752867 | None:intergenic | 35.0% |
| ! | TGGTTATTACGTAAGTGTTG+TGG | + | chr4_4:67752849-67752868 | None:intergenic | 35.0% |
| ! | TAATGACTTGTGCATTCACT+TGG | + | chr4_4:67752869-67752888 | None:intergenic | 35.0% |
| TCTGTGTGTTCCATAACAAA+TGG | - | chr4_4:67752890-67752909 | Msa0697690:intron | 35.0% | |
| ATCATCCAATGTCCACAAAA+AGG | + | chr4_4:67752947-67752966 | None:intergenic | 35.0% | |
| CTTCATACAGTCTCTTTATG+TGG | + | chr4_4:67753046-67753065 | None:intergenic | 35.0% | |
| !!! | TCGGAATCAGGGTTTTAAAT+GGG | - | chr4_4:67753202-67753221 | Msa0697690:intron | 35.0% |
| AAAATCGGATGTTACTGCAT+TGG | + | chr4_4:67753284-67753303 | None:intergenic | 35.0% | |
| ! | AATGCAGTAACATCCGATTT+TGG | - | chr4_4:67753283-67753302 | Msa0697690:intron | 35.0% |
| TGTTCGTTTATGACTAGACA+TGG | + | chr4_4:67753386-67753405 | None:intergenic | 35.0% | |
| ACAACACAATGAGATGTAGT+AGG | + | chr4_4:67753448-67753467 | None:intergenic | 35.0% | |
| AAGTCATGCAAAACTAGTAC+TGG | + | chr4_4:67753666-67753685 | None:intergenic | 35.0% | |
| ATGACTTTCTTAAGGTAGCT+AGG | - | chr4_4:67753679-67753698 | Msa0697690:CDS | 35.0% | |
| CTTATAGCATTGCACCATAT+AGG | + | chr4_4:67753705-67753724 | None:intergenic | 35.0% | |
| CTATATGGTGCAATGCTATA+AGG | - | chr4_4:67753703-67753722 | Msa0697690:CDS | 35.0% | |
| ! | ATTATTGGAGTGTTATGCTG+AGG | - | chr4_4:67753728-67753747 | Msa0697690:CDS | 35.0% |
| CAAATCCTTTCCACAATACA+AGG | + | chr4_4:67753823-67753842 | None:intergenic | 35.0% | |
| ! | ACTCTTCATTTTCCATCTCT+TGG | + | chr4_4:67753878-67753897 | None:intergenic | 35.0% |
| GATGGAAAATGAAGAGTTTG+AGG | - | chr4_4:67753881-67753900 | Msa0697690:CDS | 35.0% | |
| TTCTAAGTCTCTATGAGAAC+CGG | + | chr4_4:67753954-67753973 | None:intergenic | 35.0% | |
| CAAAGATCCCTTCACTGTAA+GGG | - | chr4_4:67750190-67750209 | Msa0697690:three_prime_UTR | 40.0% | |
| TAGGTTACCCTTACAGTGAA+GGG | + | chr4_4:67750200-67750219 | None:intergenic | 40.0% | |
| !! | AAGGGTGAGTGAGTTTGTTA+CGG | + | chr4_4:67750266-67750285 | None:intergenic | 40.0% |
| ! | ATTGAGCTTTTTGCCTGAAG+CGG | + | chr4_4:67750337-67750356 | None:intergenic | 40.0% |
| ! | GATGACCCATGAACAAGTTT+TGG | - | chr4_4:67750467-67750486 | Msa0697690:CDS | 40.0% |
| GATGAAGTAGCGAAAGAAGA+AGG | + | chr4_4:67750531-67750550 | None:intergenic | 40.0% | |
| CAGAAGCCTGTTGGAAAAAA+TGG | - | chr4_4:67750573-67750592 | Msa0697690:CDS | 40.0% | |
| !!! | CTGTCACCATTTTTTCCAAC+AGG | + | chr4_4:67750582-67750601 | None:intergenic | 40.0% |
| TGTCACTCTAAATGCAGTGA+TGG | - | chr4_4:67750621-67750640 | Msa0697690:CDS | 40.0% | |
| ! | TGGCTTTTTGTCTCCTTCTA+AGG | - | chr4_4:67750641-67750660 | Msa0697690:CDS | 40.0% |
| AAAACTTACGCCGTTCATGT+GGG | + | chr4_4:67750679-67750698 | None:intergenic | 40.0% | |
| TAAAACTTACGCCGTTCATG+TGG | + | chr4_4:67750680-67750699 | None:intergenic | 40.0% | |
| !! | GTAGAGGCCTCTAAAATAAG+TGG | - | chr4_4:67751115-67751134 | Msa0697690:intron | 40.0% |
| !! | GCCTCTAAAATAAGTGGAGA+TGG | - | chr4_4:67751121-67751140 | Msa0697690:intron | 40.0% |
| TCTGACAGATCACGATACTA+TGG | - | chr4_4:67751285-67751304 | Msa0697690:intron | 40.0% | |
| TGTAGAACCAAACATGCACT+TGG | + | chr4_4:67751513-67751532 | None:intergenic | 40.0% | |
| !! | AAGTGCATGTTTGGTTCTAC+AGG | - | chr4_4:67751512-67751531 | Msa0697690:intron | 40.0% |
| !! | AGTGCATGTTTGGTTCTACA+GGG | - | chr4_4:67751513-67751532 | Msa0697690:intron | 40.0% |
| CTACTTACCTCCTCAAAAAG+TGG | - | chr4_4:67751730-67751749 | Msa0697690:intron | 40.0% | |
| !!! | TTTGGTTCCACTTTTTGAGG+AGG | + | chr4_4:67751740-67751759 | None:intergenic | 40.0% |
| GAAGGCAACGCAATATTACT+TGG | + | chr4_4:67752152-67752171 | None:intergenic | 40.0% | |
| TTAAAAGAAGCAGGCCTTCA+TGG | - | chr4_4:67752349-67752368 | Msa0697690:CDS | 40.0% | |
| TAAAAGAAGCAGGCCTTCAT+GGG | - | chr4_4:67752350-67752369 | Msa0697690:CDS | 40.0% | |
| ATGGAGGTCTACAAAAGTGA+TGG | - | chr4_4:67752373-67752392 | Msa0697690:CDS | 40.0% | |
| ! | AGGTCTACAAAAGTGATGGA+AGG | - | chr4_4:67752377-67752396 | Msa0697690:CDS | 40.0% |
| TCCAATGTCCACAAAAAGGT+GGG | + | chr4_4:67752943-67752962 | None:intergenic | 40.0% | |
| ATCCAATGTCCACAAAAAGG+TGG | + | chr4_4:67752944-67752963 | None:intergenic | 40.0% | |
| AAAGAGACTGTATGAAGCCT+AGG | - | chr4_4:67753049-67753068 | Msa0697690:CDS | 40.0% | |
| ATCATGGGATGAATAGCAGA+TGG | + | chr4_4:67753133-67753152 | None:intergenic | 40.0% | |
| CTGCTATTCATCCCATGATA+TGG | - | chr4_4:67753134-67753153 | Msa0697690:intron | 40.0% | |
| !! | GCAAGAAGCATCCATATCAT+GGG | + | chr4_4:67753148-67753167 | None:intergenic | 40.0% |
| !!! | CTCGGAATCAGGGTTTTAAA+TGG | - | chr4_4:67753201-67753220 | Msa0697690:intron | 40.0% |
| !!! | CGGAATCAGGGTTTTAAATG+GGG | - | chr4_4:67753203-67753222 | Msa0697690:intron | 40.0% |
| !!! | GGAATCAGGGTTTTAAATGG+GGG | - | chr4_4:67753204-67753223 | Msa0697690:intron | 40.0% |
| GAGATGTAGTAGGCAGTATT+CGG | + | chr4_4:67753438-67753457 | None:intergenic | 40.0% | |
| ! | TCCAATTTTCAAAAGGCCGT+AGG | + | chr4_4:67753583-67753602 | None:intergenic | 40.0% |
| !! | TACGGCCTTTTGAAAATTGG+AGG | - | chr4_4:67753582-67753601 | Msa0697690:intron | 40.0% |
| !! | ACGGCCTTTTGAAAATTGGA+GGG | - | chr4_4:67753583-67753602 | Msa0697690:intron | 40.0% |
| ! | CTGACCCTCCAATTTTCAAA+AGG | + | chr4_4:67753590-67753609 | None:intergenic | 40.0% |
| ! | CATGCAAAACTAGTACTGGA+AGG | + | chr4_4:67753662-67753681 | None:intergenic | 40.0% |
| TTAAGGTAGCTAGGCCTATA+TGG | - | chr4_4:67753688-67753707 | Msa0697690:CDS | 40.0% | |
| TGAACCTCCCTTAAAAATGC+GGG | + | chr4_4:67753799-67753818 | None:intergenic | 40.0% | |
| GTGAACCTCCCTTAAAAATG+CGG | + | chr4_4:67753800-67753819 | None:intergenic | 40.0% | |
| TTCACCCTTGTATTGTGGAA+AGG | - | chr4_4:67753815-67753834 | Msa0697690:CDS | 40.0% | |
| TCTTGGCTACTTAACCAAAG+AGG | + | chr4_4:67753861-67753880 | None:intergenic | 40.0% | |
| TTGGTTAAGTAGCCAAGAGA+TGG | - | chr4_4:67753863-67753882 | Msa0697690:CDS | 40.0% | |
| AACGTTGGAAAGCTTCAACT+TGG | + | chr4_4:67753910-67753929 | None:intergenic | 40.0% | |
| CCTTACAGTGAAGGGATCTT+TGG | + | chr4_4:67750192-67750211 | None:intergenic | 45.0% | |
| CCAAAGATCCCTTCACTGTA+AGG | - | chr4_4:67750189-67750208 | Msa0697690:three_prime_UTR | 45.0% | |
| GTAGGTTACCCTTACAGTGA+AGG | + | chr4_4:67750201-67750220 | None:intergenic | 45.0% | |
| GAAGAGAAATGAGGAAGGGT+AGG | + | chr4_4:67750219-67750238 | None:intergenic | 45.0% | |
| !! | AGGGTGAGTGAGTTTGTTAC+GGG | + | chr4_4:67750265-67750284 | None:intergenic | 45.0% |
| ! | TTTTTCTTCTCCACCGCTTC+AGG | - | chr4_4:67750321-67750340 | Msa0697690:three_prime_UTR | 45.0% |
| CTCAATCCAGTTATGGGAGA+TGG | - | chr4_4:67750351-67750370 | Msa0697690:three_prime_UTR | 45.0% | |
| GCTCTCTCAACAACCTTAGA+AGG | + | chr4_4:67750657-67750676 | None:intergenic | 45.0% | |
| TTTAAGGATGGTGTGGCTGA+TGG | - | chr4_4:67751077-67751096 | Msa0697690:intron | 45.0% | |
| ACAGATCACGATACTATGGC+AGG | - | chr4_4:67751289-67751308 | Msa0697690:intron | 45.0% | |
| !! | GTAGAATCGGCTCGCAAATA+TGG | - | chr4_4:67751325-67751344 | Msa0697690:intron | 45.0% |
| CTTGTGTTGCCTCTAACTAG+AGG | - | chr4_4:67751453-67751472 | Msa0697690:intron | 45.0% | |
| TGTTGCCTCTAACTAGAGGA+GGG | - | chr4_4:67751457-67751476 | Msa0697690:intron | 45.0% | |
| TGGGCAAACATCAGAACCAA+TGG | + | chr4_4:67751804-67751823 | None:intergenic | 45.0% | |
| TCTGATGTTTGCCCATCTAC+TGG | - | chr4_4:67751809-67751828 | Msa0697690:intron | 45.0% | |
| GAGCATGTTTGTAGGATTGC+AGG | - | chr4_4:67752010-67752029 | Msa0697690:CDS | 45.0% | |
| GTTTGTAGGATTGCAGGCAA+CGG | - | chr4_4:67752016-67752035 | Msa0697690:CDS | 45.0% | |
| AACCTGCTTCAACCATAGCA+CGG | + | chr4_4:67752069-67752088 | None:intergenic | 45.0% | |
| ! | GCCCGATATCTTTTTGATGG+TGG | - | chr4_4:67752115-67752134 | Msa0697690:intron | 45.0% |
| TTTATTGCTTCCTCCACCAC+AGG | + | chr4_4:67752250-67752269 | None:intergenic | 45.0% | |
| ! | AAAAGTGATGGAAGGCTTGC+AGG | - | chr4_4:67752385-67752404 | Msa0697690:CDS | 45.0% |
| CCAATGTCCACAAAAAGGTG+GGG | + | chr4_4:67752942-67752961 | None:intergenic | 45.0% | |
| TGTATGAAGCCTAGGCTTAG+TGG | - | chr4_4:67753057-67753076 | Msa0697690:CDS | 45.0% | |
| TATGGTCAACCACTAAGCCT+AGG | + | chr4_4:67753069-67753088 | None:intergenic | 45.0% | |
| !! | GGCAAGAAGCATCCATATCA+TGG | + | chr4_4:67753149-67753168 | None:intergenic | 45.0% |
| !! | ATGGTTAGCCTCTATCTCAC+CGG | + | chr4_4:67753367-67753386 | None:intergenic | 45.0% |
| GTATGCAGCATATAGTGACC+TGG | - | chr4_4:67753551-67753570 | Msa0697690:intron | 45.0% | |
| !! | GCCTACGGCCTTTTGAAAAT+TGG | - | chr4_4:67753579-67753598 | Msa0697690:intron | 45.0% |
| ATTGGAGGGTCAGACTATCA+TGG | - | chr4_4:67753597-67753616 | Msa0697690:intron | 45.0% | |
| TCAGACTATCATGGAAGAGG+AGG | - | chr4_4:67753606-67753625 | Msa0697690:intron | 45.0% | |
| AGGACACCATGAATCTGAAC+TGG | - | chr4_4:67753626-67753645 | Msa0697690:intron | 45.0% | |
| GGACACCATGAATCTGAACT+GGG | - | chr4_4:67753627-67753646 | Msa0697690:intron | 45.0% | |
| CACTTCCCAGTTCAGATTCA+TGG | + | chr4_4:67753635-67753654 | None:intergenic | 45.0% | |
| ! | TGGGAGAACCCGCATTTTTA+AGG | - | chr4_4:67753788-67753807 | Msa0697690:CDS | 45.0% |
| ! | GGGAGAACCCGCATTTTTAA+GGG | - | chr4_4:67753789-67753808 | Msa0697690:CDS | 45.0% |
| !! | AGAACCCGCATTTTTAAGGG+AGG | - | chr4_4:67753792-67753811 | Msa0697690:CDS | 45.0% |
| TTCCAACGTTTCTACCAGTC+AGG | - | chr4_4:67753920-67753939 | Msa0697690:CDS | 45.0% | |
| TCCAACGTTTCTACCAGTCA+GGG | - | chr4_4:67753921-67753940 | Msa0697690:CDS | 45.0% | |
| !! | GAAGGGATCTTTGGAGTCAC+AGG | + | chr4_4:67750183-67750202 | None:intergenic | 50.0% |
| GCGATACCATCTCCCATAAC+TGG | + | chr4_4:67750360-67750379 | None:intergenic | 50.0% | |
| GTTGAGAGAGCCCACATGAA+CGG | - | chr4_4:67750666-67750685 | Msa0697690:CDS | 50.0% | |
| GTGTTGCCTCTAACTAGAGG+AGG | - | chr4_4:67751456-67751475 | Msa0697690:intron | 50.0% | |
| GTTGCCTCTAACTAGAGGAG+GGG | - | chr4_4:67751458-67751477 | Msa0697690:intron | 50.0% | |
| TTGCCTCTAACTAGAGGAGG+GGG | - | chr4_4:67751459-67751478 | Msa0697690:intron | 50.0% | |
| ACCTGCTTCAACCATAGCAC+GGG | + | chr4_4:67752068-67752087 | None:intergenic | 50.0% | |
| TTTCAGGGGAAGTGAACCTG+TGG | - | chr4_4:67752231-67752250 | Msa0697690:CDS | 50.0% | |
| TGTAGACCTCCATCCCATGA+AGG | + | chr4_4:67752366-67752385 | None:intergenic | 50.0% | |
| ! | TGCACTACCCCACCTTTTTG+TGG | - | chr4_4:67752932-67752951 | Msa0697690:intron | 50.0% |
| ! | CCCCACCTTTTTGTGGACAT+TGG | - | chr4_4:67752939-67752958 | Msa0697690:intron | 50.0% |
| ACTCATCACTACCGCCAACT+TGG | - | chr4_4:67753336-67753355 | Msa0697690:intron | 50.0% | |
| CTCATCACTACCGCCAACTT+GGG | - | chr4_4:67753337-67753356 | Msa0697690:intron | 50.0% | |
| GGGTCAGACTATCATGGAAG+AGG | - | chr4_4:67753603-67753622 | Msa0697690:intron | 50.0% | |
| GGAGGTTCACCCTTGTATTG+TGG | - | chr4_4:67753810-67753829 | Msa0697690:CDS | 50.0% | |
| TCCCTGACTGGTAGAAACGT+TGG | + | chr4_4:67753925-67753944 | None:intergenic | 50.0% | |
| AACGTTTCTACCAGTCAGGG+AGG | - | chr4_4:67753924-67753943 | Msa0697690:CDS | 50.0% | |
| ! | GAGCTTTTTGCCTGAAGCGG+TGG | + | chr4_4:67750334-67750353 | None:intergenic | 55.0% |
| ! | TTTGGGGTGCAGAAGCCTGT+TGG | - | chr4_4:67750564-67750583 | Msa0697690:CDS | 55.0% |
| CATCCCCGAGGCTGTAGAAT+CGG | - | chr4_4:67751312-67751331 | Msa0697690:intron | 55.0% | |
| TGCCTCTAACTAGAGGAGGG+GGG | - | chr4_4:67751460-67751479 | Msa0697690:intron | 55.0% | |
| TTCCCCCCTCCTCTAGTTAG+AGG | + | chr4_4:67751465-67751484 | None:intergenic | 55.0% | |
| GTTTGCCCATCTACTGGCAG+TGG | - | chr4_4:67751815-67751834 | Msa0697690:intron | 55.0% | |
| CTCCACCACTGCCAGTAGAT+GGG | + | chr4_4:67751823-67751842 | None:intergenic | 55.0% | |
| TCTCCACCACTGCCAGTAGA+TGG | + | chr4_4:67751824-67751843 | None:intergenic | 55.0% | |
| TGGTGGAGACACTGAAGCAG+AGG | - | chr4_4:67751835-67751854 | Msa0697690:intron | 55.0% | |
| ! | CAACCATAGCACGGGCTACA+TGG | + | chr4_4:67752060-67752079 | None:intergenic | 55.0% |
| !! | TTGCCGTTCTGGCTCATCCA+TGG | - | chr4_4:67752293-67752312 | Msa0697690:CDS | 55.0% |
| !! | TGCCGTTCTGGCTCATCCAT+GGG | - | chr4_4:67752294-67752313 | Msa0697690:CDS | 55.0% |
| TGCCCATGGATGAGCCAGAA+CGG | + | chr4_4:67752299-67752318 | None:intergenic | 55.0% | |
| AGAAGCAGGCCTTCATGGGA+TGG | - | chr4_4:67752354-67752373 | Msa0697690:CDS | 55.0% | |
| AGTGACCTGGCTGATGCCTA+CGG | - | chr4_4:67753564-67753583 | Msa0697690:intron | 55.0% | |
| TACCAGTCAGGGAGGAACTC+CGG | - | chr4_4:67753932-67753951 | Msa0697690:CDS | 55.0% | |
| TACTATGGCAGGCATCCCCG+AGG | - | chr4_4:67751300-67751319 | Msa0697690:intron | 60.0% | |
| ! | GAGCCGATTCTACAGCCTCG+GGG | + | chr4_4:67751318-67751337 | None:intergenic | 60.0% |
| ! | CGAGCCGATTCTACAGCCTC+GGG | + | chr4_4:67751319-67751338 | None:intergenic | 60.0% |
| ! | GCGAGCCGATTCTACAGCCT+CGG | + | chr4_4:67751320-67751339 | None:intergenic | 60.0% |
| TGCCCATCTACTGGCAGTGG+TGG | - | chr4_4:67751818-67751837 | Msa0697690:intron | 60.0% | |
| ! | ACGGGCTACATGGAGCCTTC+CGG | + | chr4_4:67752050-67752069 | None:intergenic | 60.0% |
| GCTCCATGTAGCCCGTGCTA+TGG | - | chr4_4:67752054-67752073 | Msa0697690:CDS | 60.0% | |
| GCCCGTGCTATGGTTGAAGC+AGG | - | chr4_4:67752064-67752083 | Msa0697690:CDS | 60.0% | |
| CAGGGGAAGTGAACCTGTGG+TGG | - | chr4_4:67752234-67752253 | Msa0697690:CDS | 60.0% | |
| GGGAAGTGAACCTGTGGTGG+AGG | - | chr4_4:67752237-67752256 | Msa0697690:CDS | 60.0% | |
| !! | TACTGGGGGTGTTGCCGTTC+TGG | - | chr4_4:67752282-67752301 | Msa0697690:CDS | 60.0% |
| AGCAGGCCTTCATGGGATGG+AGG | - | chr4_4:67752357-67752376 | Msa0697690:CDS | 60.0% | |
| !! | TACCGCCAACTTGGGCTAGC+CGG | - | chr4_4:67753345-67753364 | Msa0697690:intron | 60.0% |
| ! | TCTCACCGGCTAGCCCAAGT+TGG | + | chr4_4:67753353-67753372 | None:intergenic | 60.0% |
| !! | TGGGCTAGCCGGTGAGATAG+AGG | - | chr4_4:67753356-67753375 | Msa0697690:intron | 60.0% |
| AAAGGCCGTAGGCATCAGCC+AGG | + | chr4_4:67753572-67753591 | None:intergenic | 60.0% | |
| AACCGGAGTTCCTCCCTGAC+TGG | + | chr4_4:67753937-67753956 | None:intergenic | 60.0% | |
| GCAGGCAACGGAGTTGCTCC+CGG | - | chr4_4:67752028-67752047 | Msa0697690:CDS | 65.0% | |
| GCAACGGAGTTGCTCCCGGA+AGG | - | chr4_4:67752032-67752051 | Msa0697690:CDS | 65.0% | |
| CGGGCTACATGGAGCCTTCC+GGG | + | chr4_4:67752049-67752068 | None:intergenic | 65.0% | |
| ! | CACCGGCTAGCCCAAGTTGG+CGG | + | chr4_4:67753350-67753369 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 67750171 | 67754177 | 67750171 | ID=Msa0697690;Name=Msa0697690 |
| chr4_4 | mRNA | 67750171 | 67754177 | 67750171 | ID=Msa0697690-mRNA-1;Parent=Msa0697690;Name=Msa0697690-mRNA-1;_AED=0.03;_eAED=0.03;_QI=192|1|1|1|1|1|5|206|450 |
| chr4_4 | exon | 67750171 | 67750789 | 67750171 | ID=Msa0697690-mRNA-1:exon:20042;Parent=Msa0697690-mRNA-1 |
| chr4_4 | exon | 67751942 | 67752111 | 67751942 | ID=Msa0697690-mRNA-1:exon:20041;Parent=Msa0697690-mRNA-1 |
| chr4_4 | exon | 67752196 | 67752513 | 67752196 | ID=Msa0697690-mRNA-1:exon:20040;Parent=Msa0697690-mRNA-1 |
| chr4_4 | exon | 67752953 | 67753077 | 67752953 | ID=Msa0697690-mRNA-1:exon:20039;Parent=Msa0697690-mRNA-1 |
| chr4_4 | exon | 67753659 | 67754177 | 67753659 | ID=Msa0697690-mRNA-1:exon:20038;Parent=Msa0697690-mRNA-1 |
| chr4_4 | five_prime_UTR | 67753986 | 67754177 | 67753986 | ID=Msa0697690-mRNA-1:five_prime_utr;Parent=Msa0697690-mRNA-1 |
| chr4_4 | CDS | 67753659 | 67753985 | 67753659 | ID=Msa0697690-mRNA-1:cds;Parent=Msa0697690-mRNA-1 |
| chr4_4 | CDS | 67752953 | 67753077 | 67752953 | ID=Msa0697690-mRNA-1:cds;Parent=Msa0697690-mRNA-1 |
| chr4_4 | CDS | 67752196 | 67752513 | 67752196 | ID=Msa0697690-mRNA-1:cds;Parent=Msa0697690-mRNA-1 |
| chr4_4 | CDS | 67751942 | 67752111 | 67751942 | ID=Msa0697690-mRNA-1:cds;Parent=Msa0697690-mRNA-1 |
| chr4_4 | CDS | 67750377 | 67750789 | 67750377 | ID=Msa0697690-mRNA-1:cds;Parent=Msa0697690-mRNA-1 |
| chr4_4 | three_prime_UTR | 67750171 | 67750376 | 67750171 | ID=Msa0697690-mRNA-1:three_prime_utr;Parent=Msa0697690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
