Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0713460 | XP_003611447.1 | 97.924 | 289 | 6 | 0 | 1 | 289 | 1 | 289 | 0.0 | 585 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0713460 | sp|Q9C5W7|TOM2A_ARATH | 66.434 | 286 | 88 | 3 | 4 | 289 | 3 | 280 | 1.77e-121 | 352 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0713460 | G7JZV0 | 97.924 | 289 | 6 | 0 | 1 | 289 | 1 | 289 | 0.0 | 585 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0024480 | Msa0713460 | 0.802377 | 5.776105e-49 | -8.615850e-47 |
| Msa0047980 | Msa0713460 | 0.802973 | 4.350581e-49 | -8.615850e-47 |
| Msa0050730 | Msa0713460 | 0.835774 | 1.379501e-56 | -8.615850e-47 |
| Msa0050760 | Msa0713460 | 0.826725 | 2.316758e-54 | -8.615850e-47 |
| Msa0072170 | Msa0713460 | 0.831543 | 1.573142e-55 | -8.615850e-47 |
| Msa0090030 | Msa0713460 | 0.849015 | 4.240251e-60 | -8.615850e-47 |
| Msa0094010 | Msa0713460 | 0.848274 | 6.801702e-60 | -8.615850e-47 |
| Msa0098390 | Msa0713460 | -0.800168 | 1.635433e-48 | -8.615850e-47 |
| Msa0104610 | Msa0713460 | 0.814171 | 1.764869e-51 | -8.615850e-47 |
| Msa0120540 | Msa0713460 | 0.838506 | 2.761618e-57 | -8.615850e-47 |
| Msa0609970 | Msa0713460 | 0.854669 | 1.055426e-61 | -8.615850e-47 |
| Msa0614490 | Msa0713460 | 0.802862 | 4.586142e-49 | -8.615850e-47 |
| Msa0616340 | Msa0713460 | 0.809670 | 1.687395e-50 | -8.615850e-47 |
| Msa0617260 | Msa0713460 | 0.839574 | 1.460464e-57 | -8.615850e-47 |
| Msa0622340 | Msa0713460 | 0.814777 | 1.296337e-51 | -8.615850e-47 |
| Msa0625790 | Msa0713460 | 0.800361 | 1.494227e-48 | -8.615850e-47 |
| Msa0638690 | Msa0713460 | 0.817585 | 3.054978e-52 | -8.615850e-47 |
| Msa0639120 | Msa0713460 | 0.830570 | 2.725820e-55 | -8.615850e-47 |
| Msa0650620 | Msa0713460 | 0.814044 | 1.882722e-51 | -8.615850e-47 |
| Msa0663900 | Msa0713460 | 0.814000 | 1.924583e-51 | -8.615850e-47 |
| Msa0687230 | Msa0713460 | 0.802677 | 5.008050e-49 | -8.615850e-47 |
| Msa0687630 | Msa0713460 | 0.812521 | 4.066051e-51 | -8.615850e-47 |
| Msa0692110 | Msa0713460 | 0.833933 | 4.011373e-56 | -8.615850e-47 |
| Msa0697690 | Msa0713460 | 0.813754 | 2.180619e-51 | -8.615850e-47 |
| Msa0713460 | Msa0713820 | 0.805615 | 1.225258e-49 | -8.615850e-47 |
| Msa0713460 | Msa0715150 | 0.811037 | 8.552404e-51 | -8.615850e-47 |
| Msa0713460 | Msa0735620 | -0.801164 | 1.024293e-48 | -8.615850e-47 |
| Msa0713460 | Msa0737800 | 0.804649 | 1.951610e-49 | -8.615850e-47 |
| Msa0713460 | Msa0738850 | 0.806046 | 9.949723e-50 | -8.615850e-47 |
| Msa0713460 | Msa0755410 | 0.812228 | 4.712653e-51 | -8.615850e-47 |
| Msa0713460 | Msa0791910 | 0.811047 | 8.509006e-51 | -8.615850e-47 |
| Msa0713460 | Msa0792090 | 0.811886 | 5.593317e-51 | -8.615850e-47 |
| Msa0713460 | Msa0797750 | 0.841724 | 3.994407e-58 | -8.615850e-47 |
| Msa0713460 | Msa0814320 | 0.809860 | 1.535395e-50 | -8.615850e-47 |
| Msa0713460 | Msa0817260 | 0.819571 | 1.082776e-52 | -8.615850e-47 |
| Msa0713460 | Msa0817270 | 0.801595 | 8.360000e-49 | -8.615850e-47 |
| Msa0713460 | Msa0824730 | 0.800400 | 1.467120e-48 | -8.615850e-47 |
| Msa0713460 | Msa0825280 | 0.800767 | 1.235217e-48 | -8.615850e-47 |
| Msa0713460 | Msa0855160 | -0.800755 | 1.241814e-48 | -8.615850e-47 |
| Msa0713460 | Msa0882510 | 0.811080 | 8.370983e-51 | -8.615850e-47 |
| Msa0713460 | Msa0908170 | 0.838610 | 2.596517e-57 | -8.615850e-47 |
| Msa0713460 | Msa0922540 | 0.803593 | 3.237763e-49 | -8.615850e-47 |
| Msa0713460 | Msa0942730 | 0.808542 | 2.942509e-50 | -8.615850e-47 |
| Msa0713460 | Msa0959010 | 0.823336 | 1.463271e-53 | -8.615850e-47 |
| Msa0713460 | Msa0993530 | 0.833335 | 5.658496e-56 | -8.615850e-47 |
| Msa0713460 | Msa1010460 | 0.843727 | 1.173160e-58 | -8.615850e-47 |
| Msa0713460 | Msa1015060 | 0.810639 | 1.042779e-50 | -8.615850e-47 |
| Msa0713460 | Msa1073400 | 0.806182 | 9.312960e-50 | -8.615850e-47 |
| Msa0713460 | Msa1092820 | 0.807777 | 4.283367e-50 | -8.615850e-47 |
| Msa0713460 | Msa1160360 | 0.800803 | 1.214194e-48 | -8.615850e-47 |
| Msa0713460 | Msa1175330 | 0.822300 | 2.549551e-53 | -8.615850e-47 |
| Msa0713460 | Msa1184370 | 0.804857 | 1.765814e-49 | -8.615850e-47 |
| Msa0713460 | Msa1193950 | -0.802324 | 5.921563e-49 | -8.615850e-47 |
| Msa0713460 | Msa1207730 | 0.811888 | 5.587305e-51 | -8.615850e-47 |
| Msa0713460 | Msa1218650 | 0.819226 | 1.297787e-52 | -8.615850e-47 |
| Msa0713460 | Msa1219430 | 0.813909 | 2.016063e-51 | -8.615850e-47 |
| Msa0713460 | Msa1221900 | 0.802958 | 4.381985e-49 | -8.615850e-47 |
| Msa0713460 | Msa1227690 | 0.801357 | 9.353736e-49 | -8.615850e-47 |
| Msa0713460 | Msa1235630 | 0.818965 | 1.488011e-52 | -8.615850e-47 |
| Msa0713460 | Msa1237030 | 0.821504 | 3.897586e-53 | -8.615850e-47 |
| Msa0713460 | Msa1246530 | -0.836562 | 8.703959e-57 | -8.615850e-47 |
| Msa0713460 | Msa1267260 | 0.803460 | 3.448777e-49 | -8.615850e-47 |
| Msa0713460 | Msa1267840 | 0.833424 | 5.375343e-56 | -8.615850e-47 |
| Msa0713460 | Msa1296300 | 0.804517 | 2.080055e-49 | -8.615850e-47 |
| Msa0713460 | Msa1299360 | 0.828615 | 8.148728e-55 | -8.615850e-47 |
| Msa0713460 | Msa1300860 | 0.837147 | 6.169659e-57 | -8.615850e-47 |
| Msa0713460 | Msa1310690 | 0.804065 | 2.583126e-49 | -8.615850e-47 |
| Msa0713460 | Msa1327760 | 0.825751 | 3.950879e-54 | -8.615850e-47 |
| Msa0713460 | Msa1337730 | 0.833151 | 6.287892e-56 | -8.615850e-47 |
| Msa0713460 | Msa1344850 | 0.842217 | 2.958983e-58 | -8.615850e-47 |
| Msa0713460 | Msa1363700 | 0.823905 | 1.076674e-53 | -8.615850e-47 |
| Msa0713460 | Msa1365150 | 0.810088 | 1.371378e-50 | -8.615850e-47 |
| Msa0713460 | Msa1370650 | 0.802541 | 5.342243e-49 | -8.615850e-47 |
| Msa0713460 | Msa1390770 | 0.816287 | 5.976918e-52 | -8.615850e-47 |
| Msa0713460 | Msa1393800 | 0.813273 | 2.782510e-51 | -8.615850e-47 |
| Msa0713460 | Msa1396940 | 0.814318 | 1.637251e-51 | -8.615850e-47 |
| Msa0713460 | Msa1397050 | 0.811946 | 5.429010e-51 | -8.615850e-47 |
| Msa0713460 | Msa1404190 | 0.827375 | 1.619770e-54 | -8.615850e-47 |
| Msa0713460 | Msa1404540 | 0.804563 | 2.034813e-49 | -8.615850e-47 |
| Msa0713460 | Msa1404720 | 0.848263 | 6.850942e-60 | -8.615850e-47 |
| Msa0713460 | Msa1419110 | 0.807680 | 4.491492e-50 | -8.615850e-47 |
| Msa0713460 | Msa1435750 | 0.811653 | 6.286005e-51 | -8.615850e-47 |
| Msa0713460 | Msa1438640 | 0.829300 | 5.561012e-55 | -8.615850e-47 |
| Msa0713460 | Msa1439230 | 0.819544 | 1.098654e-52 | -8.615850e-47 |
| Msa0713460 | Msa1440600 | 0.827616 | 1.418144e-54 | -8.615850e-47 |
| Msa0713460 | Msa1442220 | -0.804500 | 2.097286e-49 | -8.615850e-47 |
| Msa0713460 | Msa1448800 | 0.882617 | 8.961632e-71 | -8.615850e-47 |
| Msa0713460 | Msa1458030 | 0.811262 | 7.646374e-51 | -8.615850e-47 |
| Msa0713460 | Msa1465080 | 0.810000 | 1.432943e-50 | -8.615850e-47 |
| Msa0713460 | Msa1466460 | 0.811283 | 7.565117e-51 | -8.615850e-47 |
| Msa0143080 | Msa0713460 | 0.812774 | 3.579924e-51 | -8.615850e-47 |
| Msa0145950 | Msa0713460 | 0.810063 | 1.388884e-50 | -8.615850e-47 |
| Msa0152840 | Msa0713460 | 0.815400 | 9.425597e-52 | -8.615850e-47 |
| Msa0166950 | Msa0713460 | 0.801132 | 1.040212e-48 | -8.615850e-47 |
| Msa0185590 | Msa0713460 | 0.807499 | 4.906792e-50 | -8.615850e-47 |
| Msa0212750 | Msa0713460 | -0.849479 | 3.150574e-60 | -8.615850e-47 |
| Msa0222920 | Msa0713460 | 0.821119 | 4.782045e-53 | -8.615850e-47 |
| Msa0236980 | Msa0713460 | 0.822144 | 2.771597e-53 | -8.615850e-47 |
| Msa0394400 | Msa0713460 | 0.810577 | 1.075925e-50 | -8.615850e-47 |
| Msa0403190 | Msa0713460 | 0.820656 | 6.112906e-53 | -8.615850e-47 |
| Msa0415810 | Msa0713460 | 0.806072 | 9.825731e-50 | -8.615850e-47 |
| Msa0439890 | Msa0713460 | 0.803947 | 2.733764e-49 | -8.615850e-47 |
| Msa0449820 | Msa0713460 | 0.877426 | 6.345444e-69 | -8.615850e-47 |
| Msa0449830 | Msa0713460 | 0.805650 | 1.205139e-49 | -8.615850e-47 |
| Msa0469910 | Msa0713460 | -0.824016 | 1.014116e-53 | -8.615850e-47 |
| Msa0471790 | Msa0713460 | 0.843664 | 1.219362e-58 | -8.615850e-47 |
| Msa0259560 | Msa0713460 | 0.812298 | 4.548534e-51 | -8.615850e-47 |
| Msa0264350 | Msa0713460 | 0.802647 | 5.080483e-49 | -8.615850e-47 |
| Msa0267870 | Msa0713460 | 0.806934 | 6.462788e-50 | -8.615850e-47 |
| Msa0275400 | Msa0713460 | -0.812238 | 4.688854e-51 | -8.615850e-47 |
| Msa0291020 | Msa0713460 | 0.813131 | 2.990026e-51 | -8.615850e-47 |
| Msa0295000 | Msa0713460 | -0.801154 | 1.029166e-48 | -8.615850e-47 |
| Msa0302450 | Msa0713460 | 0.820059 | 8.378076e-53 | -8.615850e-47 |
| Msa0310410 | Msa0713460 | 0.801773 | 7.687276e-49 | -8.615850e-47 |
| Msa0319330 | Msa0713460 | 0.811418 | 7.072232e-51 | -8.615850e-47 |
| Msa0321170 | Msa0713460 | 0.805383 | 1.371009e-49 | -8.615850e-47 |
| Msa0321190 | Msa0713460 | 0.810919 | 9.070874e-51 | -8.615850e-47 |
| Msa0328210 | Msa0713460 | 0.818211 | 2.206577e-52 | -8.615850e-47 |
| Msa0505060 | Msa0713460 | 0.809091 | 2.245868e-50 | -8.615850e-47 |
| Msa0506940 | Msa0713460 | 0.815963 | 7.061777e-52 | -8.615850e-47 |
| Msa0552810 | Msa0713460 | 0.803808 | 2.920736e-49 | -8.615850e-47 |
| Msa0560470 | Msa0713460 | 0.821520 | 3.865620e-53 | -8.615850e-47 |
| Msa0576980 | Msa0713460 | 0.801943 | 7.093398e-49 | -8.615850e-47 |
| Msa0578090 | Msa0713460 | 0.819384 | 1.194976e-52 | -8.615850e-47 |
| Msa0591540 | Msa0713460 | 0.803782 | 2.957803e-49 | -8.615850e-47 |
| Msa0591710 | Msa0713460 | 0.803603 | 3.222219e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0713460 | MtrunA17_Chr5g0400291 | 97.924 | 289 | 6 | 0 | 1 | 289 | 1 | 289 | 0.0 | 585 |
| Msa0713460 | MtrunA17_Chr4g0054961 | 77.431 | 288 | 57 | 2 | 2 | 289 | 1 | 280 | 1.34e-158 | 442 |
| Msa0713460 | MtrunA17_Chr1g0182821 | 37.643 | 263 | 136 | 7 | 3 | 261 | 5 | 243 | 6.31e-51 | 168 |
| Msa0713460 | MtrunA17_Chr4g0010471 | 34.934 | 229 | 117 | 5 | 5 | 230 | 4 | 203 | 3.42e-28 | 109 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0713460 | AT1G32400.2 | 66.434 | 286 | 88 | 3 | 4 | 289 | 3 | 280 | 1.80e-122 | 352 |
| Msa0713460 | AT1G32400.1 | 66.434 | 286 | 88 | 3 | 4 | 289 | 3 | 280 | 1.80e-122 | 352 |
| Msa0713460 | AT1G32400.3 | 66.434 | 286 | 88 | 3 | 4 | 289 | 3 | 280 | 1.80e-122 | 352 |
| Msa0713460 | AT2G20230.1 | 33.829 | 269 | 157 | 6 | 3 | 260 | 5 | 263 | 2.90e-38 | 136 |
| Msa0713460 | AT4G28770.1 | 37.634 | 186 | 103 | 4 | 84 | 267 | 106 | 280 | 1.96e-33 | 124 |
| Msa0713460 | AT4G28770.2 | 37.634 | 186 | 103 | 4 | 84 | 267 | 150 | 324 | 3.47e-33 | 124 |
| Msa0713460 | AT2G20740.2 | 36.158 | 177 | 91 | 5 | 85 | 253 | 12 | 174 | 3.07e-30 | 112 |
| Msa0713460 | AT2G20740.1 | 29.961 | 257 | 125 | 8 | 5 | 253 | 6 | 215 | 9.77e-30 | 112 |
| Msa0713460 | AT2G20740.3 | 31.111 | 135 | 71 | 5 | 125 | 251 | 3 | 123 | 1.18e-13 | 67.0 |
Find 103 sgRNAs with CRISPR-Local
Find 415 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTTCATTGTTTCTTGTTT+TGG | 0.129815 | 5_1:-5610490 | Msa0713460:CDS |
| AAATTATCCCTGAGAGTTTA+TGG | 0.148621 | 5_1:-5612202 | Msa0713460:five_prime_UTR |
| GGAAGAACTTACTGTTTATT+TGG | 0.179273 | 5_1:+5612020 | None:intergenic |
| CTCCATGCATCATTTCTATT+TGG | 0.183792 | 5_1:+5607598 | None:intergenic |
| TCTTGTTAGCCCTTATTGTT+AGG | 0.196919 | 5_1:-5607759 | Msa0713460:CDS |
| GGTTTGGCTATTGTGGGTTA+TGG | 0.213085 | 5_1:-5611697 | Msa0713460:CDS |
| GATAGTGCTCTAATTCAATT+TGG | 0.215025 | 5_1:-5611586 | Msa0713460:CDS |
| AATAAGCCGAAAACAGTTTA+TGG | 0.226868 | 5_1:-5612178 | Msa0713460:five_prime_UTR |
| GTGTACAGCTCTCACTTTAA+AGG | 0.229139 | 5_1:-5605992 | Msa0713460:three_prime_UTR |
| TCCCTCAACCAAAATTTAAA+AGG | 0.249770 | 5_1:+5611807 | None:intergenic |
| GTTATTTATGTTCATAGTTT+AGG | 0.252858 | 5_1:-5605879 | Msa0713460:three_prime_UTR |
| GTTTGGCTATTGTGGGTTAT+GGG | 0.276554 | 5_1:-5611696 | Msa0713460:CDS |
| ATTTGGGCGGCCGATGCTTT+TGG | 0.288143 | 5_1:-5611569 | Msa0713460:CDS |
| TTGACCACAGAAATAATAAT+TGG | 0.291345 | 5_1:+5606063 | None:intergenic |
| AGGTTTATTTACTTATTTAT+TGG | 0.292003 | 5_1:-5610526 | Msa0713460:CDS |
| TATTTACAGCCCTAACAATA+AGG | 0.297511 | 5_1:+5607749 | None:intergenic |
| TTGGCTGTGAGTTTGCTTGC+TGG | 0.304573 | 5_1:+5606169 | None:intergenic |
| TCCATGCATCATTTCTATTT+GGG | 0.305941 | 5_1:+5607599 | None:intergenic |
| TGGTGTGTTGTAGAGGCTTC+TGG | 0.307436 | 5_1:-5611762 | Msa0713460:CDS |
| CAAATCAATGCCATGTGATA+TGG | 0.315687 | 5_1:+5606090 | None:intergenic |
| CATATCACATGGCATTGATT+TGG | 0.334231 | 5_1:-5606089 | Msa0713460:three_prime_UTR |
| ATGGGTTTCTCAGAGAGAAT+TGG | 0.349575 | 5_1:-5610029 | Msa0713460:CDS |
| GGCTGCCGAACTTGCTGCCT+TGG | 0.360568 | 5_1:+5607688 | None:intergenic |
| GCTTATTTCCATAAACTCTC+AGG | 0.366524 | 5_1:+5612194 | None:intergenic |
| TTATTGTTAGGGCTGTAAAT+AGG | 0.366779 | 5_1:-5607747 | Msa0713460:CDS |
| TGTACAGCTCTCACTTTAAA+GGG | 0.369318 | 5_1:-5605991 | Msa0713460:three_prime_UTR |
| ACCTATTCTTTGACAAAAGC+TGG | 0.371812 | 5_1:-5610190 | Msa0713460:CDS |
| AGATGCTGATATCATTATCT+TGG | 0.383662 | 5_1:-5605836 | Msa0713460:three_prime_UTR |
| TCTTGGGATTGTCATCTTTG+AGG | 0.385647 | 5_1:-5609986 | Msa0713460:intron |
| CTTGTTAGCCCTTATTGTTA+GGG | 0.391844 | 5_1:-5607758 | Msa0713460:CDS |
| GAAATTCCAACAGATAAAAC+TGG | 0.392680 | 5_1:-5610069 | Msa0713460:CDS |
| GGGTTATGGGATCTATTTGC+TGG | 0.393501 | 5_1:-5611683 | Msa0713460:CDS |
| CATATTGACCGTGACTGGTT+TGG | 0.400411 | 5_1:-5611713 | Msa0713460:CDS |
| CCATCAGGGTTACCAGTTGC+TGG | 0.403929 | 5_1:-5607637 | Msa0713460:CDS |
| ACTGTTGATCTTGGTAGAGC+TGG | 0.404760 | 5_1:-5610225 | Msa0713460:CDS |
| AACTTCATATTGACCGTGAC+TGG | 0.415431 | 5_1:-5611718 | Msa0713460:CDS |
| ATTATTATTTCTGTGGTCAA+TGG | 0.415966 | 5_1:-5606060 | Msa0713460:three_prime_UTR |
| AGACAAGCAGGTCCACCATC+AGG | 0.420726 | 5_1:-5607652 | Msa0713460:CDS |
| TTGCTGGAACCTTTGCGATT+CGG | 0.422085 | 5_1:+5606185 | None:intergenic |
| ATTGTGAGATGGGTTGCTCT+TGG | 0.423628 | 5_1:-5610003 | Msa0713460:CDS |
| TTGTGAGATGGGTTGCTCTT+GGG | 0.426805 | 5_1:-5610002 | Msa0713460:CDS |
| TGGGTTTCTCAGAGAGAATT+GGG | 0.427310 | 5_1:-5610028 | Msa0713460:CDS |
| CGTGACTGGTTTGGCTATTG+TGG | 0.428490 | 5_1:-5611704 | Msa0713460:CDS |
| TGGTCCGTTGTCCCAGCAAC+TGG | 0.432745 | 5_1:+5607625 | None:intergenic |
| TTAATCCAAGGCAGCAAGTT+CGG | 0.433091 | 5_1:-5607693 | Msa0713460:CDS |
| TTTAGTGGCACTGTTGATCT+TGG | 0.436265 | 5_1:-5610234 | Msa0713460:CDS |
| ATAGTGCTCTAATTCAATTT+GGG | 0.450779 | 5_1:-5611585 | Msa0713460:CDS |
| GGTGTGTTGTAGAGGCTTCT+GGG | 0.459724 | 5_1:-5611761 | Msa0713460:CDS |
| TATGCAGAAAACATATATAG+AGG | 0.465119 | 5_1:-5611841 | Msa0713460:intron |
| CCGCTGACCGGAGAAATATC+TGG | 0.468496 | 5_1:+5611610 | None:intergenic |
| GTGGTCAATGGTGTTGAGAC+TGG | 0.468849 | 5_1:-5606048 | Msa0713460:three_prime_UTR |
| GTGACTGGTTTGGCTATTGT+GGG | 0.470771 | 5_1:-5611703 | Msa0713460:CDS |
| CATCATTTCTATTTGGGCGT+TGG | 0.476497 | 5_1:+5607605 | None:intergenic |
| TTGACAAATTGCCTAAGGCT+TGG | 0.479937 | 5_1:-5611522 | Msa0713460:intron |
| ATTTACTTATTTATTGGTGT+CGG | 0.480194 | 5_1:-5610520 | Msa0713460:CDS |
| TGAAGTTTAAAAGCTTCAAA+AGG | 0.481784 | 5_1:+5611734 | None:intergenic |
| TGGAACCTTTGCGATTCGGA+TGG | 0.484280 | 5_1:+5606189 | None:intergenic |
| GCTTCCAATTATTATTTCTG+TGG | 0.484440 | 5_1:-5606067 | Msa0713460:three_prime_UTR |
| AGAAAGATGGTGTGTTGTAG+AGG | 0.492994 | 5_1:-5611769 | Msa0713460:exon |
| TTGATAAGGATACACAAATC+AGG | 0.493243 | 5_1:+5610434 | None:intergenic |
| GAATTGGGATATTGTGAGAT+GGG | 0.497392 | 5_1:-5610013 | Msa0713460:CDS |
| AGAATTGGGATATTGTGAGA+TGG | 0.498426 | 5_1:-5610014 | Msa0713460:CDS |
| ATTTACAGCCCTAACAATAA+GGG | 0.500669 | 5_1:+5607750 | None:intergenic |
| ATCTGGCGTTGGAGAAATGT+CGG | 0.508214 | 5_1:+5611627 | None:intergenic |
| ATGCATGGAGTACACGGATG+AGG | 0.508700 | 5_1:-5607585 | Msa0713460:CDS |
| TTTATCGTCATCAGAAGTCT+TGG | 0.522604 | 5_1:+5611651 | None:intergenic |
| TCCAACGCCAGATATTTCTC+CGG | 0.526278 | 5_1:-5611617 | Msa0713460:CDS |
| TCTGGCGTTGGAGAAATGTC+GGG | 0.528483 | 5_1:+5611628 | None:intergenic |
| TGAGACATCATAACTTAATG+TGG | 0.530278 | 5_1:-5605910 | Msa0713460:three_prime_UTR |
| ACACCATCTTTCTCTAACTG+TGG | 0.532257 | 5_1:+5611779 | None:intergenic |
| CATCAGGGTTACCAGTTGCT+GGG | 0.538957 | 5_1:-5607636 | Msa0713460:CDS |
| TTGCTCAATAATAGACAAGC+AGG | 0.539753 | 5_1:-5607664 | Msa0713460:CDS |
| CTGTTGATCTTGGTAGAGCT+GGG | 0.542791 | 5_1:-5610224 | Msa0713460:CDS |
| CTTATTTCCATAAACTCTCA+GGG | 0.548689 | 5_1:+5612195 | None:intergenic |
| ACCGGAGAAATATCTGGCGT+TGG | 0.558113 | 5_1:+5611616 | None:intergenic |
| GGAACCTTTGCGATTCGGAT+GGG | 0.559366 | 5_1:+5606190 | None:intergenic |
| TCATCACTATCGTAATCTGC+TGG | 0.565871 | 5_1:+5607724 | None:intergenic |
| GTTACCAGTTGCTGGGACAA+CGG | 0.574204 | 5_1:-5607629 | Msa0713460:CDS |
| ATTGGAGCTACGACACGGAA+TGG | 0.578523 | 5_1:-5610463 | Msa0713460:CDS |
| AAACCACAGTTAGAGAAAGA+TGG | 0.580324 | 5_1:-5611782 | Msa0713460:exon |
| CACAATAGCCAAACCAGTCA+CGG | 0.584267 | 5_1:+5611705 | None:intergenic |
| TCATAACTTAATGTGGGCTG+TGG | 0.587060 | 5_1:-5605903 | Msa0713460:three_prime_UTR |
| GCTTGTCTATTATTGAGCAA+TGG | 0.590849 | 5_1:+5607667 | None:intergenic |
| ATGATGAGCTTATTAATCCA+AGG | 0.592571 | 5_1:-5607705 | Msa0713460:CDS |
| AAGCAAGCATACCAAGCCTT+AGG | 0.594368 | 5_1:+5611511 | None:intergenic |
| CGATTCTAAGCCATATCACA+TGG | 0.597438 | 5_1:-5606100 | Msa0713460:three_prime_UTR |
| ATGCAGAAAACATATATAGA+GGG | 0.597621 | 5_1:-5611840 | Msa0713460:intron |
| GAGTACACGGATGAGGGAGA+AGG | 0.602719 | 5_1:-5607578 | Msa0713460:intron |
| TGCATGGAGTACACGGATGA+GGG | 0.603602 | 5_1:-5607584 | Msa0713460:CDS |
| GACAAGCAGGTCCACCATCA+GGG | 0.606528 | 5_1:-5607651 | Msa0713460:CDS |
| AGAGCACTATCACCGCTGAC+CGG | 0.609186 | 5_1:+5611598 | None:intergenic |
| GTGCTCTAATTCAATTTGGG+CGG | 0.609501 | 5_1:-5611582 | Msa0713460:CDS |
| AGAGACACAGCCAAAAGCAT+CGG | 0.614496 | 5_1:+5611559 | None:intergenic |
| GAAATGATGCATGGAGTACA+CGG | 0.615934 | 5_1:-5607591 | Msa0713460:CDS |
| GAGACATCATAACTTAATGT+GGG | 0.617030 | 5_1:-5605909 | Msa0713460:three_prime_UTR |
| GCCCAAATAGAAATGATGCA+TGG | 0.623440 | 5_1:-5607600 | Msa0713460:CDS |
| ACAACCCATCCGAATCGCAA+AGG | 0.644593 | 5_1:-5606194 | Msa0713460:CDS |
| GCAACTGGTAACCCTGATGG+TGG | 0.644952 | 5_1:+5607640 | None:intergenic |
| GAGATTACATGATGGTGCAG+CGG | 0.647361 | 5_1:+5606133 | None:intergenic |
| GTTGTATTGGAGCTACGACA+CGG | 0.649188 | 5_1:-5610468 | Msa0713460:CDS |
| CCAGCAACTGGTAACCCTGA+TGG | 0.655467 | 5_1:+5607637 | None:intergenic |
| CCAGATATTTCTCCGGTCAG+CGG | 0.660823 | 5_1:-5611610 | Msa0713460:CDS |
| GACATGAAGAGATTACATGA+TGG | 0.674922 | 5_1:+5606125 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAATAGCAATAATAATTT+AGG | + | chr5_1:5606013-5606032 | None:intergenic | 10.0% |
| !! | TATTGTTAACTTAATAACTA+TGG | + | chr5_1:5606732-5606751 | None:intergenic | 15.0% |
| !! | AGGTTTATTTACTTATTTAT+TGG | - | chr5_1:5607473-5607492 | Msa0713460:intron | 15.0% |
| !!! | TTTTTTTTTTTTTTCTTTCC+AGG | - | chr5_1:5607908-5607927 | Msa0713460:intron | 15.0% |
| !!! | TTTGGTTTTTTATTGTATTA+TGG | + | chr5_1:5608857-5608876 | None:intergenic | 15.0% |
| !! | AATAAAATTATTAACCAAGA+TGG | + | chr5_1:5609634-5609653 | None:intergenic | 15.0% |
| !! | AATAAAGAAATGTGAAAAAT+TGG | + | chr5_1:5609985-5610004 | None:intergenic | 15.0% |
| !!! | TTCTTATTATATTTTGTCTA+AGG | - | chr5_1:5610188-5610207 | Msa0713460:CDS | 15.0% |
| !!! | TAGAGGAATATATTTTAATT+TGG | - | chr5_1:5610651-5610670 | Msa0713460:intron | 15.0% |
| !!! | ATACATCTATAGTTTTTTAA+AGG | - | chr5_1:5611003-5611022 | Msa0713460:intron | 15.0% |
| !! | AAAAACATTACATAAAATTC+CGG | + | chr5_1:5611498-5611517 | None:intergenic | 15.0% |
| !!! | AAAATTCCATAAACTGTTTT+CGG | + | chr5_1:5605830-5605849 | None:intergenic | 20.0% |
| !!! | TTGAACTACCTTTTAAATTT+TGG | - | chr5_1:5606184-5606203 | Msa0713460:CDS | 20.0% |
| !! | AATTATGGCTAAAATGTAAT+TGG | - | chr5_1:5606772-5606791 | Msa0713460:intron | 20.0% |
| !! | ATTATGGCTAAAATGTAATT+GGG | - | chr5_1:5606773-5606792 | Msa0713460:intron | 20.0% |
| !! | GCTTCATAATGTAAAATTAA+AGG | - | chr5_1:5606975-5606994 | Msa0713460:intron | 20.0% |
| !!! | AGTTTCTTTTCTTAAACAAA+AGG | + | chr5_1:5607043-5607062 | None:intergenic | 20.0% |
| !! | AAACATGTGTAGAAAAAATA+AGG | + | chr5_1:5607127-5607146 | None:intergenic | 20.0% |
| !! | ATGATAACAAATAAAGCTTT+AGG | + | chr5_1:5607271-5607290 | None:intergenic | 20.0% |
| !! | ATTTACTTATTTATTGGTGT+CGG | - | chr5_1:5607479-5607498 | Msa0713460:intron | 20.0% |
| !! | CTAAATCCAAAAATATTTCA+TGG | - | chr5_1:5607598-5607617 | Msa0713460:CDS | 20.0% |
| !! | TATATTAATTGAAACTTGTG+TGG | + | chr5_1:5607624-5607643 | None:intergenic | 20.0% |
| !! | TTAATCGTTAAACGAATTAT+TGG | - | chr5_1:5607712-5607731 | Msa0713460:CDS | 20.0% |
| !!! | AACAAAGTATTCAATTTTAG+TGG | - | chr5_1:5607750-5607769 | Msa0713460:CDS | 20.0% |
| !!! | AATTTATGATCTGAAATTGA+AGG | - | chr5_1:5607859-5607878 | Msa0713460:intron | 20.0% |
| !!! | GAGATTTTGATATGATATAT+GGG | - | chr5_1:5607952-5607971 | Msa0713460:intron | 20.0% |
| !! | TAAACAAAAAGTTGTTTGAT+TGG | - | chr5_1:5608036-5608055 | Msa0713460:intron | 20.0% |
| !! | AAACACAAATTATAGAGAAA+GGG | + | chr5_1:5608378-5608397 | None:intergenic | 20.0% |
| !! | AAAACACAAATTATAGAGAA+AGG | + | chr5_1:5608379-5608398 | None:intergenic | 20.0% |
| !! | ATTAACATTGAATGAACATT+AGG | + | chr5_1:5608536-5608555 | None:intergenic | 20.0% |
| !! | TATCAAATTAACAAACTTGT+CGG | + | chr5_1:5608624-5608643 | None:intergenic | 20.0% |
| !!! | TTGATAATGATTGAAAATGA+AGG | - | chr5_1:5608638-5608657 | Msa0713460:intron | 20.0% |
| !!! | TTGTATTATGGATTTTCTTA+TGG | + | chr5_1:5608845-5608864 | None:intergenic | 20.0% |
| !! | TTGAAAATACTTGGATAAAA+GGG | + | chr5_1:5609287-5609306 | None:intergenic | 20.0% |
| !! | TTTCAATTTCAAATTGGATT+GGG | - | chr5_1:5609495-5609514 | Msa0713460:intron | 20.0% |
| !!! | GATAGAAATTGTTTTTCATT+TGG | - | chr5_1:5610931-5610950 | Msa0713460:intron | 20.0% |
| !! | GAAAAATGTCTTATGTAAAA+AGG | + | chr5_1:5611552-5611571 | None:intergenic | 20.0% |
| !! | GTTATTTATGTTCATAGTTT+AGG | - | chr5_1:5612120-5612139 | Msa0713460:five_prime_UTR | 20.0% |
| !! | ATAATAATTTAGGATGCGTT+TGG | + | chr5_1:5606003-5606022 | None:intergenic | 25.0% |
| ! | AAATCGAAACTATCAAAACA+TGG | + | chr5_1:5606102-5606121 | None:intergenic | 25.0% |
| ! | TATGCAGAAAACATATATAG+AGG | - | chr5_1:5606158-5606177 | Msa0713460:CDS | 25.0% |
| ! | ATGCAGAAAACATATATAGA+GGG | - | chr5_1:5606159-5606178 | Msa0713460:CDS | 25.0% |
| !!! | TACCTTTTAAATTTTGGTTG+AGG | - | chr5_1:5606190-5606209 | Msa0713460:CDS | 25.0% |
| !!! | ACCTTTTAAATTTTGGTTGA+GGG | - | chr5_1:5606191-5606210 | Msa0713460:CDS | 25.0% |
| ! | TGAAGTTTAAAAGCTTCAAA+AGG | + | chr5_1:5606268-5606287 | None:intergenic | 25.0% |
| ! | ATAGTGCTCTAATTCAATTT+GGG | - | chr5_1:5606414-5606433 | Msa0713460:intron | 25.0% |
| !! | TATATTTTGCTGCATTAGTT+TGG | - | chr5_1:5606602-5606621 | Msa0713460:intron | 25.0% |
| !! | AACTTGCTTCAGAAAAATTA+TGG | - | chr5_1:5606757-5606776 | Msa0713460:intron | 25.0% |
| ! | CAAATCCAAGCATAAAAATA+TGG | + | chr5_1:5606883-5606902 | None:intergenic | 25.0% |
| !!! | CATATTTTTATGCTTGGATT+TGG | - | chr5_1:5606881-5606900 | Msa0713460:intron | 25.0% |
| ! | TTACAGTAATGACAAATACA+AGG | + | chr5_1:5607229-5607248 | None:intergenic | 25.0% |
| !!! | GCTTTATTTGTTATCATTCA+TGG | - | chr5_1:5607274-5607293 | Msa0713460:intron | 25.0% |
| !! | TGATATTATGAGTTGAACAT+TGG | + | chr5_1:5607329-5607348 | None:intergenic | 25.0% |
| ! | TTAATTGCATGTTTCATGTT+TGG | - | chr5_1:5607449-5607468 | Msa0713460:intron | 25.0% |
| ! | TTGAATACTTTGTTCACTTA+AGG | + | chr5_1:5607744-5607763 | None:intergenic | 25.0% |
| ! | TTTCAGATCATAAATTACCA+TGG | + | chr5_1:5607855-5607874 | None:intergenic | 25.0% |
| !! | ATCTGAAATTGAAGGTATAT+GGG | - | chr5_1:5607867-5607886 | Msa0713460:intron | 25.0% |
| !!! | GGAGATTTTGATATGATATA+TGG | - | chr5_1:5607951-5607970 | Msa0713460:intron | 25.0% |
| !! | ATATTCATGGGATGATATTT+TGG | + | chr5_1:5608142-5608161 | None:intergenic | 25.0% |
| ! | AAATATCATCCCATGAATAT+TGG | - | chr5_1:5608142-5608161 | Msa0713460:intron | 25.0% |
| ! | ACTTATCAACCAATATTCAT+GGG | + | chr5_1:5608154-5608173 | None:intergenic | 25.0% |
| ! | TACTTATCAACCAATATTCA+TGG | + | chr5_1:5608155-5608174 | None:intergenic | 25.0% |
| !! | TTATTTGTCTAAAGAGCATA+CGG | + | chr5_1:5608193-5608212 | None:intergenic | 25.0% |
| ! | TGCTCTTTAGACAAATAAAT+AGG | - | chr5_1:5608195-5608214 | Msa0713460:intron | 25.0% |
| ! | ACCTAATGTTCATTCAATAA+AGG | - | chr5_1:5608438-5608457 | Msa0713460:intron | 25.0% |
| ! | CCTAATGTTCATTCAATAAA+GGG | - | chr5_1:5608439-5608458 | Msa0713460:intron | 25.0% |
| ! | TACTTAGCTAATTATTTGTC+TGG | + | chr5_1:5608700-5608719 | None:intergenic | 25.0% |
| ! | ATGACCATTCTTATAGATAT+AGG | - | chr5_1:5608724-5608743 | Msa0713460:intron | 25.0% |
| !!! | TTTCTTATGGTTTTAGTTCT+TGG | + | chr5_1:5608832-5608851 | None:intergenic | 25.0% |
| ! | TCAAAAAGGAATTCTTAGTT+TGG | + | chr5_1:5608875-5608894 | None:intergenic | 25.0% |
| !! | ACTAAGAATTCCTTTTTGAA+AGG | - | chr5_1:5608876-5608895 | Msa0713460:intron | 25.0% |
| ! | GAATATCATTCCTTTCAAAA+AGG | + | chr5_1:5608889-5608908 | None:intergenic | 25.0% |
| !! | TACTTTTGCGACATTATTTT+GGG | + | chr5_1:5609082-5609101 | None:intergenic | 25.0% |
| ! | GTTGAAAATACTTGGATAAA+AGG | + | chr5_1:5609288-5609307 | None:intergenic | 25.0% |
| ! | AATGTAAATGGATCAAAGTT+AGG | - | chr5_1:5609345-5609364 | Msa0713460:intron | 25.0% |
| ! | CTTTCAATTTCAAATTGGAT+TGG | - | chr5_1:5609494-5609513 | Msa0713460:intron | 25.0% |
| ! | ATTGATTATTAACACCATCT+TGG | - | chr5_1:5609617-5609636 | Msa0713460:intron | 25.0% |
| ! | TGTTTGTCAAACAAAAAATC+TGG | - | chr5_1:5610161-5610180 | Msa0713460:intron | 25.0% |
| !!! | ACTTTTAATTGTACAGAAAC+AGG | + | chr5_1:5610621-5610640 | None:intergenic | 25.0% |
| ! | TCTAATATCAACATTTCTTC+TGG | + | chr5_1:5610826-5610845 | None:intergenic | 25.0% |
| ! | ATAATCTTTGATAGATTTCC+TGG | - | chr5_1:5610857-5610876 | Msa0713460:intron | 25.0% |
| ! | ATTACATAAAATTCCGGTTA+AGG | + | chr5_1:5611492-5611511 | None:intergenic | 25.0% |
| ! | TGAATTGTGATCAATATGTT+AGG | - | chr5_1:5611644-5611663 | Msa0713460:CDS | 25.0% |
| ! | GAATTGTGATCAATATGTTA+GGG | - | chr5_1:5611645-5611664 | Msa0713460:CDS | 25.0% |
| ! | TTGACCACAGAAATAATAAT+TGG | + | chr5_1:5611939-5611958 | None:intergenic | 25.0% |
| !!! | ATTATTATTTCTGTGGTCAA+TGG | - | chr5_1:5611939-5611958 | Msa0713460:intron | 25.0% |
| !! | TGAGAGAAATATATCTTTTG+TGG | - | chr5_1:5611979-5611998 | Msa0713460:intron | 25.0% |
| ! | GAAAAACTAACTCAATCTTT+CGG | + | chr5_1:5612192-5612211 | None:intergenic | 25.0% |
| AAATTATCCCTGAGAGTTTA+TGG | - | chr5_1:5605797-5605816 | Msa0713460:three_prime_UTR | 30.0% | |
| CTTATTTCCATAAACTCTCA+GGG | + | chr5_1:5605807-5605826 | None:intergenic | 30.0% | |
| AATAAGCCGAAAACAGTTTA+TGG | - | chr5_1:5605821-5605840 | Msa0713460:three_prime_UTR | 30.0% | |
| GGAAGAACTTACTGTTTATT+TGG | + | chr5_1:5605982-5606001 | None:intergenic | 30.0% | |
| TAATTTCCGTCTACAAATTG+AGG | - | chr5_1:5606029-5606048 | Msa0713460:three_prime_UTR | 30.0% | |
| ! | GTTCAATTTGTTTGATTAGC+AGG | - | chr5_1:5606070-5606089 | Msa0713460:three_prime_UTR | 30.0% |
| GACTGATATGCATTGAATAA+TGG | - | chr5_1:5606124-5606143 | Msa0713460:exon | 30.0% | |
| TCCCTCAACCAAAATTTAAA+AGG | + | chr5_1:5606195-5606214 | None:intergenic | 30.0% | |
| GATAGTGCTCTAATTCAATT+TGG | - | chr5_1:5606413-5606432 | Msa0713460:intron | 30.0% | |
| !!! | CTTTTTTGACAAATTGCCTA+AGG | - | chr5_1:5606472-5606491 | Msa0713460:intron | 30.0% |
| ! | TTACTTCTTTGACTCGTAAA+AGG | - | chr5_1:5606566-5606585 | Msa0713460:intron | 30.0% |
| ! | ATTATTGTCCTCTAAGAGAT+TGG | - | chr5_1:5606672-5606691 | Msa0713460:intron | 30.0% |
| AATGTATTCCAATCTCTTAG+AGG | + | chr5_1:5606683-5606702 | None:intergenic | 30.0% | |
| ATCAAACTGAATACACATAG+TGG | + | chr5_1:5606859-5606878 | None:intergenic | 30.0% | |
| !! | TGATGCCATATTTTTATGCT+TGG | - | chr5_1:5606875-5606894 | Msa0713460:intron | 30.0% |
| TCTGTGCTTAAGTAATAACT+AGG | - | chr5_1:5606952-5606971 | Msa0713460:intron | 30.0% | |
| CTGTGCTTAAGTAATAACTA+GGG | - | chr5_1:5606953-5606972 | Msa0713460:intron | 30.0% | |
| GCTAAGCTTATTTCGTTATT+TGG | - | chr5_1:5606997-5607016 | Msa0713460:intron | 30.0% | |
| CAAGGACAAAATACTACATA+TGG | + | chr5_1:5607211-5607230 | None:intergenic | 30.0% | |
| AAGAATTACGACAAAGTGAA+AGG | + | chr5_1:5607366-5607385 | None:intergenic | 30.0% | |
| CGTATGCATATTGTTTGTAT+AGG | - | chr5_1:5607390-5607409 | Msa0713460:intron | 30.0% | |
| !! | CTCTTCATTGTTTCTTGTTT+TGG | - | chr5_1:5607509-5607528 | Msa0713460:intron | 30.0% |
| !!! | GTTTCTTGTTTTGGTTGTAT+TGG | - | chr5_1:5607518-5607537 | Msa0713460:intron | 30.0% |
| TTGATAAGGATACACAAATC+AGG | + | chr5_1:5607568-5607587 | None:intergenic | 30.0% | |
| TTAGCATAAGACGTTTGATA+AGG | + | chr5_1:5607582-5607601 | None:intergenic | 30.0% | |
| GAAGTAAGTAAAATTCTCCA+TGG | - | chr5_1:5607835-5607854 | Msa0713460:intron | 30.0% | |
| ! | GATCTGAAATTGAAGGTATA+TGG | - | chr5_1:5607866-5607885 | Msa0713460:intron | 30.0% |
| ! | TTTTATCTGTTGGAATTTCC+TGG | + | chr5_1:5607929-5607948 | None:intergenic | 30.0% |
| GAAATTCCAACAGATAAAAC+TGG | - | chr5_1:5607930-5607949 | Msa0713460:intron | 30.0% | |
| !! | AAATCTCCAGTTTTATCTGT+TGG | + | chr5_1:5607939-5607958 | None:intergenic | 30.0% |
| ! | TATTTGTCTAAAGAGCATAC+GGG | + | chr5_1:5608192-5608211 | None:intergenic | 30.0% |
| ACCAAAACATTCAGAAAGAA+AGG | - | chr5_1:5608294-5608313 | Msa0713460:intron | 30.0% | |
| ! | ACCTTTCTTTCTGAATGTTT+TGG | + | chr5_1:5608298-5608317 | None:intergenic | 30.0% |
| TTTCACACATGCAATCATTA+AGG | - | chr5_1:5608345-5608364 | Msa0713460:intron | 30.0% | |
| CCCTTTATTGAATGAACATT+AGG | + | chr5_1:5608442-5608461 | None:intergenic | 30.0% | |
| ! | TTTCAGTCTGAAATTTCCAA+TGG | - | chr5_1:5608562-5608581 | Msa0713460:intron | 30.0% |
| GGATCCTATATCTATAAGAA+TGG | + | chr5_1:5608731-5608750 | None:intergenic | 30.0% | |
| !!! | TATGGTTTTAGTTCTTGGTT+TGG | + | chr5_1:5608827-5608846 | None:intergenic | 30.0% |
| AAATGCTGTGGAAATCATAT+TGG | - | chr5_1:5608942-5608961 | Msa0713460:intron | 30.0% | |
| !! | CTACTTTTGCGACATTATTT+TGG | + | chr5_1:5609083-5609102 | None:intergenic | 30.0% |
| TAGTGGTTGTTGAAAATACT+TGG | + | chr5_1:5609296-5609315 | None:intergenic | 30.0% | |
| TGTAGAATTGATGAACTTAG+TGG | + | chr5_1:5609313-5609332 | None:intergenic | 30.0% | |
| TCATCAATTCTACAGCAATA+AGG | - | chr5_1:5609319-5609338 | Msa0713460:intron | 30.0% | |
| CATCAATTCTACAGCAATAA+GGG | - | chr5_1:5609320-5609339 | Msa0713460:intron | 30.0% | |
| GCAATAAGGGTAAATGTAAA+TGG | - | chr5_1:5609333-5609352 | Msa0713460:intron | 30.0% | |
| ! | CCAATTTGAAATTGAAAGCT+CGG | + | chr5_1:5609492-5609511 | None:intergenic | 30.0% |
| !! | TTTTGAGAGCAGAAAAACAA+GGG | - | chr5_1:5609588-5609607 | Msa0713460:intron | 30.0% |
| TCTCACTAGAAAAGATTTAG+AGG | - | chr5_1:5609884-5609903 | Msa0713460:intron | 30.0% | |
| ! | GAAAAGATTTAGAGGTACAA+TGG | - | chr5_1:5609892-5609911 | Msa0713460:intron | 30.0% |
| !!! | TTTTTGATGGTGGATAATCA+GGG | + | chr5_1:5610064-5610083 | None:intergenic | 30.0% |
| !!! | TTTTTTGATGGTGGATAATC+AGG | + | chr5_1:5610065-5610084 | None:intergenic | 30.0% |
| GATTATCCACCATCAAAAAA+AGG | - | chr5_1:5610065-5610084 | Msa0713460:CDS | 30.0% | |
| ATTTACAGCCCTAACAATAA+GGG | + | chr5_1:5610252-5610271 | None:intergenic | 30.0% | |
| TATTTACAGCCCTAACAATA+AGG | + | chr5_1:5610253-5610272 | None:intergenic | 30.0% | |
| TTATTGTTAGGGCTGTAAAT+AGG | - | chr5_1:5610252-5610271 | Msa0713460:intron | 30.0% | |
| ATGATGAGCTTATTAATCCA+AGG | - | chr5_1:5610294-5610313 | Msa0713460:intron | 30.0% | |
| TCCATGCATCATTTCTATTT+GGG | + | chr5_1:5610403-5610422 | None:intergenic | 30.0% | |
| TATCTGATATTATGTTCTGC+TGG | - | chr5_1:5610473-5610492 | Msa0713460:CDS | 30.0% | |
| ATTTGGTATATCTAAGCACT+TGG | - | chr5_1:5610668-5610687 | Msa0713460:intron | 30.0% | |
| TTTGGTATATCTAAGCACTT+GGG | - | chr5_1:5610669-5610688 | Msa0713460:intron | 30.0% | |
| CTAGGAACTTGGTTATTATT+GGG | + | chr5_1:5610790-5610809 | None:intergenic | 30.0% | |
| !!! | TTTTTTTTTTGTGCAGAACC+AGG | + | chr5_1:5610878-5610897 | None:intergenic | 30.0% |
| ATGACAGTTGTACTATAATC+AGG | + | chr5_1:5611187-5611206 | None:intergenic | 30.0% | |
| CTGTCATCAAATATGATTCA+TGG | + | chr5_1:5611256-5611275 | None:intergenic | 30.0% | |
| AATGCAATGACATTATAGTC+AGG | + | chr5_1:5611344-5611363 | None:intergenic | 30.0% | |
| GAGACATCAAATCAATAGAA+TGG | + | chr5_1:5611445-5611464 | None:intergenic | 30.0% | |
| TTGATGTCTCAATTCTCAAA+TGG | - | chr5_1:5611455-5611474 | Msa0713460:intron | 30.0% | |
| !! | ATTCTGTTTTGTGCTTTTTG+TGG | + | chr5_1:5611527-5611546 | None:intergenic | 30.0% |
| ATATTGATCACAATTCAGAG+TGG | + | chr5_1:5611641-5611660 | None:intergenic | 30.0% | |
| !! | GCTTCCAATTATTATTTCTG+TGG | - | chr5_1:5611932-5611951 | Msa0713460:intron | 30.0% |
| TGAGACATCATAACTTAATG+TGG | - | chr5_1:5612089-5612108 | Msa0713460:five_prime_UTR | 30.0% | |
| GAGACATCATAACTTAATGT+GGG | - | chr5_1:5612090-5612109 | Msa0713460:five_prime_UTR | 30.0% | |
| AGATGCTGATATCATTATCT+TGG | - | chr5_1:5612163-5612182 | Msa0713460:five_prime_UTR | 30.0% | |
| GCTTATTTCCATAAACTCTC+AGG | + | chr5_1:5605808-5605827 | None:intergenic | 35.0% | |
| ! | TAAGCACTTGTGCAAGTTTT+CGG | + | chr5_1:5605942-5605961 | None:intergenic | 35.0% |
| AGCTAACCTCAATTTGTAGA+CGG | + | chr5_1:5606038-5606057 | None:intergenic | 35.0% | |
| AAACCACAGTTAGAGAAAGA+TGG | - | chr5_1:5606217-5606236 | Msa0713460:CDS | 35.0% | |
| TTTATCGTCATCAGAAGTCT+TGG | + | chr5_1:5606351-5606370 | None:intergenic | 35.0% | |
| ACAATGATATGCCCCAAAAA+TGG | + | chr5_1:5606529-5606548 | None:intergenic | 35.0% | |
| ! | AGTTGATTCTTAAGTGTCTC+TGG | + | chr5_1:5606807-5606826 | None:intergenic | 35.0% |
| !!! | CTCTCATCAATTAGCTTTTG+AGG | - | chr5_1:5606828-5606847 | Msa0713460:intron | 35.0% |
| !!! | ATCAATTAGCTTTTGAGGCA+TGG | - | chr5_1:5606833-5606852 | Msa0713460:intron | 35.0% |
| GCTTTATACACTTCCTAGAA+TGG | - | chr5_1:5607075-5607094 | Msa0713460:intron | 35.0% | |
| !! | CACTTTTTGTGTACCATTCT+AGG | + | chr5_1:5607091-5607110 | None:intergenic | 35.0% |
| GTCATTACTGTAAATTGACG+AGG | - | chr5_1:5607236-5607255 | Msa0713460:intron | 35.0% | |
| ATTACGACAAAGTGAAAGGA+AGG | + | chr5_1:5607362-5607381 | None:intergenic | 35.0% | |
| CAATTAAAGTGAGACAGTAC+TGG | + | chr5_1:5607436-5607455 | None:intergenic | 35.0% | |
| ! | GTGTGGCCATGAAATATTTT+TGG | + | chr5_1:5607607-5607626 | None:intergenic | 35.0% |
| CACAAAACGTCACATACAAA+GGG | + | chr5_1:5607676-5607695 | None:intergenic | 35.0% | |
| ACACAAAACGTCACATACAA+AGG | + | chr5_1:5607677-5607696 | None:intergenic | 35.0% | |
| ! | GCTTTTGTCAAAGAATAGGT+AGG | + | chr5_1:5607809-5607828 | None:intergenic | 35.0% |
| ACCTATTCTTTGACAAAAGC+TGG | - | chr5_1:5607809-5607828 | Msa0713460:intron | 35.0% | |
| ! | TCCAGCTTTTGTCAAAGAAT+AGG | + | chr5_1:5607813-5607832 | None:intergenic | 35.0% |
| AGAATTGGGATATTGTGAGA+TGG | - | chr5_1:5607985-5608004 | Msa0713460:intron | 35.0% | |
| GAATTGGGATATTGTGAGAT+GGG | - | chr5_1:5607986-5608005 | Msa0713460:intron | 35.0% | |
| AGGTCTAATTATGCAAACCT+AGG | - | chr5_1:5608314-5608333 | Msa0713460:intron | 35.0% | |
| GGTCTAATTATGCAAACCTA+GGG | - | chr5_1:5608315-5608334 | Msa0713460:intron | 35.0% | |
| AATAGCATTAGAGTAGGTGA+AGG | + | chr5_1:5608415-5608434 | None:intergenic | 35.0% | |
| TGTACAATACACCAAATGGT+GGG | + | chr5_1:5608513-5608532 | None:intergenic | 35.0% | |
| TAGGTGTACAATACACCAAA+TGG | + | chr5_1:5608517-5608536 | None:intergenic | 35.0% | |
| AAATTTCCAATGGTCATGCA+AGG | - | chr5_1:5608572-5608591 | Msa0713460:intron | 35.0% | |
| CTGGAATTAATGGAACTGTA+AGG | + | chr5_1:5608674-5608693 | None:intergenic | 35.0% | |
| CTAATTATTTGTCTGGCAAC+TGG | + | chr5_1:5608693-5608712 | None:intergenic | 35.0% | |
| GGATCCAAAGTTCATAATGT+AGG | - | chr5_1:5608745-5608764 | Msa0713460:intron | 35.0% | |
| AGGTCCTACATTATGAACTT+TGG | + | chr5_1:5608752-5608771 | None:intergenic | 35.0% | |
| AGTGAATCCCAAAGAATACA+GGG | - | chr5_1:5608973-5608992 | Msa0713460:intron | 35.0% | |
| ATCTCGTGTTTGAACATTGA+CGG | - | chr5_1:5609024-5609043 | Msa0713460:intron | 35.0% | |
| GCTGAAGACTAACATAATTG+TGG | - | chr5_1:5609112-5609131 | Msa0713460:intron | 35.0% | |
| AATACGATAAACTGTGCTTC+AGG | - | chr5_1:5609140-5609159 | Msa0713460:intron | 35.0% | |
| ATCCAACACAAAAACACCTA+TGG | + | chr5_1:5609179-5609198 | None:intergenic | 35.0% | |
| !! | GGATAAAAGGGTTCACTTTT+GGG | + | chr5_1:5609275-5609294 | None:intergenic | 35.0% |
| ! | TGGATAAAAGGGTTCACTTT+TGG | + | chr5_1:5609276-5609295 | None:intergenic | 35.0% |
| GCGATTCTACGAGAAAATTT+GGG | + | chr5_1:5609400-5609419 | None:intergenic | 35.0% | |
| TGCGATTCTACGAGAAAATT+TGG | + | chr5_1:5609401-5609420 | None:intergenic | 35.0% | |
| CCGAGCTTTCAATTTCAAAT+TGG | - | chr5_1:5609489-5609508 | Msa0713460:intron | 35.0% | |
| GAATGCTTGAAATCTTGATG+AGG | - | chr5_1:5609533-5609552 | Msa0713460:intron | 35.0% | |
| !! | CTTTTGAGAGCAGAAAAACA+AGG | - | chr5_1:5609587-5609606 | Msa0713460:intron | 35.0% |
| TTGACAGTCATCAATGACAA+CGG | - | chr5_1:5609662-5609681 | Msa0713460:intron | 35.0% | |
| ! | AAACAAAGCCTTTTCCCTTT+AGG | - | chr5_1:5609688-5609707 | Msa0713460:intron | 35.0% |
| AGATAGTCCAATAGCTATAG+AGG | - | chr5_1:5609845-5609864 | Msa0713460:intron | 35.0% | |
| GATAGTCCAATAGCTATAGA+GGG | - | chr5_1:5609846-5609865 | Msa0713460:intron | 35.0% | |
| TAAAGAGAAATGAAGTCACG+AGG | - | chr5_1:5610004-5610023 | Msa0713460:CDS | 35.0% | |
| !!! | TACCTCTCTCCTTTTTTTGA+TGG | + | chr5_1:5610077-5610096 | None:intergenic | 35.0% |
| ! | AAAAAGGAGAGAGGTATACT+TGG | - | chr5_1:5610081-5610100 | Msa0713460:intron | 35.0% |
| ! | AAAAGGAGAGAGGTATACTT+GGG | - | chr5_1:5610082-5610101 | Msa0713460:intron | 35.0% |
| TCTTGTTAGCCCTTATTGTT+AGG | - | chr5_1:5610240-5610259 | Msa0713460:CDS | 35.0% | |
| CTTGTTAGCCCTTATTGTTA+GGG | - | chr5_1:5610241-5610260 | Msa0713460:CDS | 35.0% | |
| GCTTGTCTATTATTGAGCAA+TGG | + | chr5_1:5610335-5610354 | None:intergenic | 35.0% | |
| TTGCTCAATAATAGACAAGC+AGG | - | chr5_1:5610335-5610354 | Msa0713460:intron | 35.0% | |
| CTCCATGCATCATTTCTATT+TGG | + | chr5_1:5610404-5610423 | None:intergenic | 35.0% | |
| ! | TAAAAGTATGCTCTCACTAG+AGG | - | chr5_1:5610634-5610653 | Msa0713460:intron | 35.0% |
| !!! | CCTTGATCACTAGCTTTTAA+GGG | + | chr5_1:5610702-5610721 | None:intergenic | 35.0% |
| !!! | TCCTTGATCACTAGCTTTTA+AGG | + | chr5_1:5610703-5610722 | None:intergenic | 35.0% |
| TTAAAAGCTAGTGATCAAGG+AGG | - | chr5_1:5610702-5610721 | Msa0713460:intron | 35.0% | |
| TAAAAGCTAGTGATCAAGGA+GGG | - | chr5_1:5610703-5610722 | Msa0713460:intron | 35.0% | |
| GCTAGGAACTTGGTTATTAT+TGG | + | chr5_1:5610791-5610810 | None:intergenic | 35.0% | |
| TCACCTCTTACACACATAAA+TGG | - | chr5_1:5611145-5611164 | Msa0713460:intron | 35.0% | |
| TGACCATTTATGTGTGTAAG+AGG | + | chr5_1:5611151-5611170 | None:intergenic | 35.0% | |
| TGTCTCAATTCTCAAATGGA+TGG | - | chr5_1:5611459-5611478 | Msa0713460:intron | 35.0% | |
| AGATTGCTAAATAACAGAGC+TGG | + | chr5_1:5611577-5611596 | None:intergenic | 35.0% | |
| TTTAGTCTCATAGCTGATCA+TGG | - | chr5_1:5611700-5611719 | Msa0713460:CDS | 35.0% | |
| GACATGAAGAGATTACATGA+TGG | + | chr5_1:5611877-5611896 | None:intergenic | 35.0% | |
| CAAATCAATGCCATGTGATA+TGG | + | chr5_1:5611912-5611931 | None:intergenic | 35.0% | |
| !! | CATATCACATGGCATTGATT+TGG | - | chr5_1:5611910-5611929 | Msa0713460:intron | 35.0% |
| TGTACAGCTCTCACTTTAAA+GGG | - | chr5_1:5612008-5612027 | Msa0713460:intron | 35.0% | |
| ACACCATCTTTCTCTAACTG+TGG | + | chr5_1:5606223-5606242 | None:intergenic | 40.0% | |
| AGAAAGATGGTGTGTTGTAG+AGG | - | chr5_1:5606230-5606249 | Msa0713460:intron | 40.0% | |
| AACTTCATATTGACCGTGAC+TGG | - | chr5_1:5606281-5606300 | Msa0713460:intron | 40.0% | |
| ! | GTTTGGCTATTGTGGGTTAT+GGG | - | chr5_1:5606303-5606322 | Msa0713460:intron | 40.0% |
| GTGCTCTAATTCAATTTGGG+CGG | - | chr5_1:5606417-5606436 | Msa0713460:intron | 40.0% | |
| TTGACAAATTGCCTAAGGCT+TGG | - | chr5_1:5606477-5606496 | Msa0713460:intron | 40.0% | |
| !!! | TGCTCTTTTCCTGCCATTTT+TGG | - | chr5_1:5606513-5606532 | Msa0713460:intron | 40.0% |
| !!! | GCTCTTTTCCTGCCATTTTT+GGG | - | chr5_1:5606514-5606533 | Msa0713460:intron | 40.0% |
| !!! | CTCTTTTCCTGCCATTTTTG+GGG | - | chr5_1:5606515-5606534 | Msa0713460:intron | 40.0% |
| TTACACCGTTTAACCCTTAC+GGG | + | chr5_1:5606912-5606931 | None:intergenic | 40.0% | |
| GTTACACCGTTTAACCCTTA+CGG | + | chr5_1:5606913-5606932 | None:intergenic | 40.0% | |
| ! | TAAAGTGAGACAGTACTGGA+TGG | + | chr5_1:5607432-5607451 | None:intergenic | 40.0% |
| TTGCATGTTTCATGTTTGGC+AGG | - | chr5_1:5607453-5607472 | Msa0713460:intron | 40.0% | |
| ATACAAAGGGAGAGTGAAAG+AGG | + | chr5_1:5607663-5607682 | None:intergenic | 40.0% | |
| TTTAGTGGCACTGTTGATCT+TGG | - | chr5_1:5607765-5607784 | Msa0713460:CDS | 40.0% | |
| ATGGGTTTCTCAGAGAGAAT+TGG | - | chr5_1:5607970-5607989 | Msa0713460:intron | 40.0% | |
| TGGGTTTCTCAGAGAGAATT+GGG | - | chr5_1:5607971-5607990 | Msa0713460:intron | 40.0% | |
| TCTTGGGATTGTCATCTTTG+AGG | - | chr5_1:5608013-5608032 | Msa0713460:intron | 40.0% | |
| TGTGTGAAAATGAATGCCCT+AGG | + | chr5_1:5608334-5608353 | None:intergenic | 40.0% | |
| GGTGTCAATAGCATTAGAGT+AGG | + | chr5_1:5608421-5608440 | None:intergenic | 40.0% | |
| TCATTCAATAAAGGGCAACC+CGG | - | chr5_1:5608447-5608466 | Msa0713460:intron | 40.0% | |
| GTGTACAATACACCAAATGG+TGG | + | chr5_1:5608514-5608533 | None:intergenic | 40.0% | |
| TGTTAACCTTGCATGACCAT+TGG | + | chr5_1:5608581-5608600 | None:intergenic | 40.0% | |
| TGTCTGGCAACTGGAATTAA+TGG | + | chr5_1:5608684-5608703 | None:intergenic | 40.0% | |
| ACTATGTGCAACGAAACCTA+TGG | + | chr5_1:5608793-5608812 | None:intergenic | 40.0% | |
| TCTCTCACTTGTAAATGCTG+TGG | - | chr5_1:5608930-5608949 | Msa0713460:intron | 40.0% | |
| CTGTGGAAATCATATTGGAG+CGG | - | chr5_1:5608947-5608966 | Msa0713460:intron | 40.0% | |
| TGTGGAAATCATATTGGAGC+GGG | - | chr5_1:5608948-5608967 | Msa0713460:intron | 40.0% | |
| GAGTGAATCCCAAAGAATAC+AGG | - | chr5_1:5608972-5608991 | Msa0713460:intron | 40.0% | |
| AATCCCAAAGAATACAGGGA+AGG | - | chr5_1:5608977-5608996 | Msa0713460:intron | 40.0% | |
| ! | CGGAGGCTTTTATAGTTGAA+AGG | - | chr5_1:5609044-5609063 | Msa0713460:intron | 40.0% |
| !! | TGCCATAGGTGTTTTTGTGT+TGG | - | chr5_1:5609174-5609193 | Msa0713460:intron | 40.0% |
| ! | AAGCAAGAAAGGCTTGTTTC+CGG | + | chr5_1:5609245-5609264 | None:intergenic | 40.0% |
| TGGGAGTTTCAAAGCAAGAA+AGG | + | chr5_1:5609256-5609275 | None:intergenic | 40.0% | |
| TTAATCCTAGGAGCTTCGAT+GGG | + | chr5_1:5609467-5609486 | None:intergenic | 40.0% | |
| TTTAATCCTAGGAGCTTCGA+TGG | + | chr5_1:5609468-5609487 | None:intergenic | 40.0% | |
| !! | GAAAGCTCGGTTTTAATCCT+AGG | + | chr5_1:5609479-5609498 | None:intergenic | 40.0% |
| CATTGTCCCTCTATAGCTAT+TGG | + | chr5_1:5609855-5609874 | None:intergenic | 40.0% | |
| TGAAAAATTGGCCACTAGAG+CGG | + | chr5_1:5609973-5609992 | None:intergenic | 40.0% | |
| !!! | CTCTCTCCTTTTTTTGATGG+TGG | + | chr5_1:5610074-5610093 | None:intergenic | 40.0% |
| CACCATCAAAAAAAGGAGAG+AGG | - | chr5_1:5610072-5610091 | Msa0713460:CDS | 40.0% | |
| ! | AAAGGAGAGAGGTATACTTG+GGG | - | chr5_1:5610083-5610102 | Msa0713460:intron | 40.0% |
| AGGAATGTGTATCGAATTGC+AGG | - | chr5_1:5610208-5610227 | Msa0713460:CDS | 40.0% | |
| TCATCACTATCGTAATCTGC+TGG | + | chr5_1:5610278-5610297 | None:intergenic | 40.0% | |
| TTAATCCAAGGCAGCAAGTT+CGG | - | chr5_1:5610306-5610325 | Msa0713460:intron | 40.0% | |
| CATCATTTCTATTTGGGCGT+TGG | + | chr5_1:5610397-5610416 | None:intergenic | 40.0% | |
| GCCCAAATAGAAATGATGCA+TGG | - | chr5_1:5610399-5610418 | Msa0713460:intron | 40.0% | |
| GAAATGATGCATGGAGTACA+CGG | - | chr5_1:5610408-5610427 | Msa0713460:intron | 40.0% | |
| !!! | GATCACTAGCTTTTAAGGGA+GGG | + | chr5_1:5610698-5610717 | None:intergenic | 40.0% |
| !!! | TGATCACTAGCTTTTAAGGG+AGG | + | chr5_1:5610699-5610718 | None:intergenic | 40.0% |
| CCCTTAAAAGCTAGTGATCA+AGG | - | chr5_1:5610699-5610718 | Msa0713460:intron | 40.0% | |
| !! | TGCTCGGTGTAGTATTTAAG+TGG | + | chr5_1:5610738-5610757 | None:intergenic | 40.0% |
| ATGTACCACACGACTACTAT+GGG | + | chr5_1:5610762-5610781 | None:intergenic | 40.0% | |
| ATAGTAGTCGTGTGGTACAT+GGG | - | chr5_1:5610762-5610781 | Msa0713460:intron | 40.0% | |
| GTATGATCATGCTAGGAACT+TGG | + | chr5_1:5610801-5610820 | None:intergenic | 40.0% | |
| TCTGGTTGTATGATCATGCT+AGG | + | chr5_1:5610808-5610827 | None:intergenic | 40.0% | |
| TTATGTGTGTAAGAGGTGAG+AGG | + | chr5_1:5611144-5611163 | None:intergenic | 40.0% | |
| ATACTGCTCCTTGTTCAGTA+TGG | - | chr5_1:5611759-5611778 | Msa0713460:CDS | 40.0% | |
| TACTGCTCCTTGTTCAGTAT+GGG | - | chr5_1:5611760-5611779 | Msa0713460:CDS | 40.0% | |
| TATCAAGCCCATACTGAACA+AGG | + | chr5_1:5611770-5611789 | None:intergenic | 40.0% | |
| CGATTCTAAGCCATATCACA+TGG | - | chr5_1:5611899-5611918 | Msa0713460:intron | 40.0% | |
| GTGTACAGCTCTCACTTTAA+AGG | - | chr5_1:5612007-5612026 | Msa0713460:intron | 40.0% | |
| ! | TCATAACTTAATGTGGGCTG+TGG | - | chr5_1:5612096-5612115 | Msa0713460:five_prime_UTR | 40.0% |
| ! | CATATTGACCGTGACTGGTT+TGG | - | chr5_1:5606286-5606305 | Msa0713460:intron | 45.0% |
| CACAATAGCCAAACCAGTCA+CGG | + | chr5_1:5606297-5606316 | None:intergenic | 45.0% | |
| !! | GTGACTGGTTTGGCTATTGT+GGG | - | chr5_1:5606296-5606315 | Msa0713460:intron | 45.0% |
| ! | GGTTTGGCTATTGTGGGTTA+TGG | - | chr5_1:5606302-5606321 | Msa0713460:intron | 45.0% |
| GGGTTATGGGATCTATTTGC+TGG | - | chr5_1:5606316-5606335 | Msa0713460:intron | 45.0% | |
| ! | ATCTGGCGTTGGAGAAATGT+CGG | + | chr5_1:5606375-5606394 | None:intergenic | 45.0% |
| TCCAACGCCAGATATTTCTC+CGG | - | chr5_1:5606382-5606401 | Msa0713460:intron | 45.0% | |
| ! | AGAGACACAGCCAAAAGCAT+CGG | + | chr5_1:5606443-5606462 | None:intergenic | 45.0% |
| AAGCAAGCATACCAAGCCTT+AGG | + | chr5_1:5606491-5606510 | None:intergenic | 45.0% | |
| TGATATGCCCCAAAAATGGC+AGG | + | chr5_1:5606525-5606544 | None:intergenic | 45.0% | |
| TCATGCCCGTAAGGGTTAAA+CGG | - | chr5_1:5606904-5606923 | Msa0713460:intron | 45.0% | |
| GTTGTATTGGAGCTACGACA+CGG | - | chr5_1:5607531-5607550 | Msa0713460:intron | 45.0% | |
| ACTGTTGATCTTGGTAGAGC+TGG | - | chr5_1:5607774-5607793 | Msa0713460:intron | 45.0% | |
| CTGTTGATCTTGGTAGAGCT+GGG | - | chr5_1:5607775-5607794 | Msa0713460:intron | 45.0% | |
| !! | ATTGTGAGATGGGTTGCTCT+TGG | - | chr5_1:5607996-5608015 | Msa0713460:intron | 45.0% |
| !! | TTGTGAGATGGGTTGCTCTT+GGG | - | chr5_1:5607997-5608016 | Msa0713460:intron | 45.0% |
| TACTTTCCCTTAGCAGCAAG+CGG | + | chr5_1:5608111-5608130 | None:intergenic | 45.0% | |
| CAGCCTTCCCTGTATTCTTT+GGG | + | chr5_1:5608983-5609002 | None:intergenic | 45.0% | |
| TCGTGTTTGAACATTGACGG+AGG | - | chr5_1:5609027-5609046 | Msa0713460:intron | 45.0% | |
| AGGATACAAGCATGTGCCAT+AGG | - | chr5_1:5609160-5609179 | Msa0713460:intron | 45.0% | |
| GGTTTCGGTATGATTGAGGA+GGG | + | chr5_1:5609224-5609243 | None:intergenic | 45.0% | |
| CTCCTCAATCATACCGAAAC+CGG | - | chr5_1:5609223-5609242 | Msa0713460:intron | 45.0% | |
| TTCCGGTTTCGGTATGATTG+AGG | + | chr5_1:5609228-5609247 | None:intergenic | 45.0% | |
| ! | GAAAGGCTTGTTTCCGGTTT+CGG | + | chr5_1:5609239-5609258 | None:intergenic | 45.0% |
| TCTTGATGAGGAGAATGCAC+TGG | - | chr5_1:5609545-5609564 | Msa0713460:intron | 45.0% | |
| ! | AAGCCTTTTCCCTTTAGGTG+AGG | - | chr5_1:5609693-5609712 | Msa0713460:intron | 45.0% |
| TCCATACGACCTCACCTAAA+GGG | + | chr5_1:5609705-5609724 | None:intergenic | 45.0% | |
| ATCCATACGACCTCACCTAA+AGG | + | chr5_1:5609706-5609725 | None:intergenic | 45.0% | |
| GGGTATTCTCTTGCGTAGTT+TGG | - | chr5_1:5609769-5609788 | Msa0713460:intron | 45.0% | |
| ! | AGAGAAACCGACAGAAGTAC+CGG | - | chr5_1:5609800-5609819 | Msa0713460:intron | 45.0% |
| ATTACATCCAGCCTCCTTAC+CGG | + | chr5_1:5609822-5609841 | None:intergenic | 45.0% | |
| TAGAATTTCAGTCCCTGACC+TGG | - | chr5_1:5609934-5609953 | Msa0713460:intron | 45.0% | |
| GTATGCCTAAATCCAGGTCA+GGG | + | chr5_1:5609949-5609968 | None:intergenic | 45.0% | |
| AGTATGCCTAAATCCAGGTC+AGG | + | chr5_1:5609950-5609969 | None:intergenic | 45.0% | |
| AAGTCACGAGGATATACTCG+TGG | - | chr5_1:5610016-5610035 | Msa0713460:CDS | 45.0% | |
| !! | TGATGGTGGATAATCAGGGT+AGG | + | chr5_1:5610060-5610079 | None:intergenic | 45.0% |
| ! | AAGGAGAGAGGTATACTTGG+GGG | - | chr5_1:5610084-5610103 | Msa0713460:intron | 45.0% |
| TGGGGGGTCTAATGTAATGA+AGG | - | chr5_1:5610101-5610120 | Msa0713460:intron | 45.0% | |
| GCACTATACTTGTGTGAGTG+TGG | - | chr5_1:5610555-5610574 | Msa0713460:intron | 45.0% | |
| GTGTGAGTGTGGTGTGTATA+TGG | - | chr5_1:5610566-5610585 | Msa0713460:intron | 45.0% | |
| ! | AACAGGAGCATAAGACAGGA+AGG | + | chr5_1:5610604-5610623 | None:intergenic | 45.0% |
| ! | CAGAAACAGGAGCATAAGAC+AGG | + | chr5_1:5610608-5610627 | None:intergenic | 45.0% |
| GGTGTAGTATTTAAGTGGCC+TGG | + | chr5_1:5610733-5610752 | None:intergenic | 45.0% | |
| CATGTACCACACGACTACTA+TGG | + | chr5_1:5610763-5610782 | None:intergenic | 45.0% | |
| CATAGTAGTCGTGTGGTACA+TGG | - | chr5_1:5610761-5610780 | Msa0713460:intron | 45.0% | |
| GGATGGCTAAACACCTTAAC+CGG | - | chr5_1:5611476-5611495 | Msa0713460:intron | 45.0% | |
| TTGCTGGAACCTTTGCGATT+CGG | + | chr5_1:5611817-5611836 | None:intergenic | 45.0% | |
| !!! | CAGCGGCTTTTTTCTTCAGT+TGG | + | chr5_1:5611852-5611871 | None:intergenic | 45.0% |
| ! | GAGATTACATGATGGTGCAG+CGG | + | chr5_1:5611869-5611888 | None:intergenic | 45.0% |
| TGGTGTGTTGTAGAGGCTTC+TGG | - | chr5_1:5606237-5606256 | Msa0713460:intron | 50.0% | |
| GGTGTGTTGTAGAGGCTTCT+GGG | - | chr5_1:5606238-5606257 | Msa0713460:intron | 50.0% | |
| !! | CGTGACTGGTTTGGCTATTG+TGG | - | chr5_1:5606295-5606314 | Msa0713460:intron | 50.0% |
| ! | TCTGGCGTTGGAGAAATGTC+GGG | + | chr5_1:5606374-5606393 | None:intergenic | 50.0% |
| ACCGGAGAAATATCTGGCGT+TGG | + | chr5_1:5606386-5606405 | None:intergenic | 50.0% | |
| CCAGATATTTCTCCGGTCAG+CGG | - | chr5_1:5606389-5606408 | Msa0713460:intron | 50.0% | |
| ! | TGGATTTGGTCATGCCCGTA+AGG | - | chr5_1:5606895-5606914 | Msa0713460:intron | 50.0% |
| ! | GGATTTGGTCATGCCCGTAA+GGG | - | chr5_1:5606896-5606915 | Msa0713460:intron | 50.0% |
| ATTGGAGCTACGACACGGAA+TGG | - | chr5_1:5607536-5607555 | Msa0713460:intron | 50.0% | |
| ! | TTTGTCCCGCTTGCTGCTAA+GGG | - | chr5_1:5608102-5608121 | Msa0713460:intron | 50.0% |
| ACTTTCCCTTAGCAGCAAGC+GGG | + | chr5_1:5608110-5608129 | None:intergenic | 50.0% | |
| TACAGTGCTATGCTCGCCAT+AGG | - | chr5_1:5608774-5608793 | Msa0713460:intron | 50.0% | |
| CCAGCCTTCCCTGTATTCTT+TGG | + | chr5_1:5608984-5609003 | None:intergenic | 50.0% | |
| CCAAAGAATACAGGGAAGGC+TGG | - | chr5_1:5608981-5609000 | Msa0713460:intron | 50.0% | |
| AGAATACAGGGAAGGCTGGA+AGG | - | chr5_1:5608985-5609004 | Msa0713460:intron | 50.0% | |
| CGGTTTCGGTATGATTGAGG+AGG | + | chr5_1:5609225-5609244 | None:intergenic | 50.0% | |
| ATGTACCCATCGAAGCTCCT+AGG | - | chr5_1:5609459-5609478 | Msa0713460:intron | 50.0% | |
| CGACCTCACCTAAAGGGAAA+AGG | + | chr5_1:5609699-5609718 | None:intergenic | 50.0% | |
| TCCCTTTAGGTGAGGTCGTA+TGG | - | chr5_1:5609701-5609720 | Msa0713460:intron | 50.0% | |
| !! | AACCGACAGAAGTACCGGTA+AGG | - | chr5_1:5609805-5609824 | Msa0713460:intron | 50.0% |
| CTCCTTACCGGTACTTCTGT+CGG | + | chr5_1:5609810-5609829 | None:intergenic | 50.0% | |
| GGTAAGGAGGCTGGATGTAA+TGG | - | chr5_1:5609821-5609840 | Msa0713460:intron | 50.0% | |
| TCAGTCCCTGACCTGGATTT+AGG | - | chr5_1:5609941-5609960 | Msa0713460:intron | 50.0% | |
| AGCGGAGTATGCCTAAATCC+AGG | + | chr5_1:5609955-5609974 | None:intergenic | 50.0% | |
| TTAGGCATACTCCGCTCTAG+TGG | - | chr5_1:5609959-5609978 | Msa0713460:intron | 50.0% | |
| GGTAGGCAGGGAGAAAAACT+AGG | + | chr5_1:5610043-5610062 | None:intergenic | 50.0% | |
| GTGGATAATCAGGGTAGGCA+GGG | + | chr5_1:5610055-5610074 | None:intergenic | 50.0% | |
| ! | AGGAGAGAGGTATACTTGGG+GGG | - | chr5_1:5610085-5610104 | Msa0713460:intron | 50.0% |
| CATCAGGGTTACCAGTTGCT+GGG | - | chr5_1:5610363-5610382 | Msa0713460:intron | 50.0% | |
| GTTACCAGTTGCTGGGACAA+CGG | - | chr5_1:5610370-5610389 | Msa0713460:intron | 50.0% | |
| ATGCATGGAGTACACGGATG+AGG | - | chr5_1:5610414-5610433 | Msa0713460:intron | 50.0% | |
| TGCATGGAGTACACGGATGA+GGG | - | chr5_1:5610415-5610434 | Msa0713460:intron | 50.0% | |
| CACGACTACTATGGGATGCT+CGG | + | chr5_1:5610754-5610773 | None:intergenic | 50.0% | |
| AGCATCCCATAGTAGTCGTG+TGG | - | chr5_1:5610754-5610773 | Msa0713460:intron | 50.0% | |
| ACAACCCATCCGAATCGCAA+AGG | - | chr5_1:5611805-5611824 | Msa0713460:five_prime_UTR | 50.0% | |
| ! | GGAACCTTTGCGATTCGGAT+GGG | + | chr5_1:5611812-5611831 | None:intergenic | 50.0% |
| ! | TGGAACCTTTGCGATTCGGA+TGG | + | chr5_1:5611813-5611832 | None:intergenic | 50.0% |
| ! | TTGGCTGTGAGTTTGCTTGC+TGG | + | chr5_1:5611833-5611852 | None:intergenic | 50.0% |
| ! | GTGGTCAATGGTGTTGAGAC+TGG | - | chr5_1:5611951-5611970 | Msa0713460:intron | 50.0% |
| CCGCTGACCGGAGAAATATC+TGG | + | chr5_1:5606392-5606411 | None:intergenic | 55.0% | |
| ! | AGAGCACTATCACCGCTGAC+CGG | + | chr5_1:5606404-5606423 | None:intergenic | 55.0% |
| ! | ATTTGGGCGGCCGATGCTTT+TGG | - | chr5_1:5606430-5606449 | Msa0713460:intron | 55.0% |
| ! | CTTTGTCCCGCTTGCTGCTA+AGG | - | chr5_1:5608101-5608120 | Msa0713460:intron | 55.0% |
| ACTAGAGCTCCCGCATATGC+AGG | - | chr5_1:5608473-5608492 | Msa0713460:intron | 55.0% | |
| CTAGAGCTCCCGCATATGCA+GGG | - | chr5_1:5608474-5608493 | Msa0713460:intron | 55.0% | |
| GGCGAGCATAGCACTGTAGT+AGG | + | chr5_1:5608772-5608791 | None:intergenic | 55.0% | |
| ATACAGGGAAGGCTGGAAGG+TGG | - | chr5_1:5608988-5609007 | Msa0713460:intron | 55.0% | |
| !! | CGACAGAAGTACCGGTAAGG+AGG | - | chr5_1:5609808-5609827 | Msa0713460:intron | 55.0% |
| !! | AGAAGTACCGGTAAGGAGGC+TGG | - | chr5_1:5609812-5609831 | Msa0713460:intron | 55.0% |
| GGTGGATAATCAGGGTAGGC+AGG | + | chr5_1:5610056-5610075 | None:intergenic | 55.0% | |
| AGACAAGCAGGTCCACCATC+AGG | - | chr5_1:5610347-5610366 | Msa0713460:intron | 55.0% | |
| GACAAGCAGGTCCACCATCA+GGG | - | chr5_1:5610348-5610367 | Msa0713460:intron | 55.0% | |
| GCAACTGGTAACCCTGATGG+TGG | + | chr5_1:5610362-5610381 | None:intergenic | 55.0% | |
| CCAGCAACTGGTAACCCTGA+TGG | + | chr5_1:5610365-5610384 | None:intergenic | 55.0% | |
| CCATCAGGGTTACCAGTTGC+TGG | - | chr5_1:5610362-5610381 | Msa0713460:intron | 55.0% | |
| GAGTACACGGATGAGGGAGA+AGG | - | chr5_1:5610421-5610440 | Msa0713460:intron | 55.0% | |
| GTGATCAAGGAGGGAGAACC+AGG | - | chr5_1:5610712-5610731 | Msa0713460:intron | 55.0% | |
| TTCCCGGACCCTGCATATGC+GGG | + | chr5_1:5608485-5608504 | None:intergenic | 60.0% | |
| CTTCCCGGACCCTGCATATG+CGG | + | chr5_1:5608486-5608505 | None:intergenic | 60.0% | |
| GCATATGCAGGGTCCGGGAA+GGG | - | chr5_1:5608485-5608504 | Msa0713460:intron | 60.0% | |
| CATATGCAGGGTCCGGGAAG+GGG | - | chr5_1:5608486-5608505 | Msa0713460:intron | 60.0% | |
| ! | CAAATGGTGGGACCCCTTCC+CGG | + | chr5_1:5608501-5608520 | None:intergenic | 60.0% |
| TGGTCCGTTGTCCCAGCAAC+TGG | + | chr5_1:5610377-5610396 | None:intergenic | 60.0% | |
| ! | ATGCGGGAGCTCTAGTGCGC+CGG | + | chr5_1:5608469-5608488 | None:intergenic | 65.0% |
| GCTCCCGCATATGCAGGGTC+CGG | - | chr5_1:5608479-5608498 | Msa0713460:intron | 65.0% | |
| CTCCCGCATATGCAGGGTCC+GGG | - | chr5_1:5608480-5608499 | Msa0713460:intron | 65.0% | |
| CGCATATGCAGGGTCCGGGA+AGG | - | chr5_1:5608484-5608503 | Msa0713460:intron | 65.0% | |
| CGGGAAGGGGTCCCACCATT+TGG | - | chr5_1:5608499-5608518 | Msa0713460:intron | 65.0% | |
| !! | GGCTGCCGAACTTGCTGCCT+TGG | + | chr5_1:5610314-5610333 | None:intergenic | 65.0% |
| ! | TGCGGGAGCTCTAGTGCGCC+GGG | + | chr5_1:5608468-5608487 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 5605765 | 5612256 | 5605765 | ID=Msa0713460;Name=Msa0713460 |
| chr5_1 | mRNA | 5605765 | 5612256 | 5605765 | ID=Msa0713460-mRNA-1;Parent=Msa0713460;Name=Msa0713460-mRNA-1;_AED=0.06;_eAED=0.06;_QI=296|1|1|1|0.66|0.57|7|372|289 |
| chr5_1 | exon | 5605765 | 5606244 | 5605765 | ID=Msa0713460-mRNA-1:exon:2465;Parent=Msa0713460-mRNA-1 |
| chr5_1 | exon | 5607579 | 5607791 | 5607579 | ID=Msa0713460-mRNA-1:exon:2464;Parent=Msa0713460-mRNA-1 |
| chr5_1 | exon | 5609987 | 5610091 | 5609987 | ID=Msa0713460-mRNA-1:exon:2463;Parent=Msa0713460-mRNA-1 |
| chr5_1 | exon | 5610184 | 5610264 | 5610184 | ID=Msa0713460-mRNA-1:exon:2462;Parent=Msa0713460-mRNA-1 |
| chr5_1 | exon | 5610447 | 5610546 | 5610447 | ID=Msa0713460-mRNA-1:exon:2461;Parent=Msa0713460-mRNA-1 |
| chr5_1 | exon | 5611523 | 5611856 | 5611523 | ID=Msa0713460-mRNA-1:exon:2460;Parent=Msa0713460-mRNA-1 |
| chr5_1 | exon | 5612032 | 5612256 | 5612032 | ID=Msa0713460-mRNA-1:exon:2459;Parent=Msa0713460-mRNA-1 |
| chr5_1 | five_prime_UTR | 5612032 | 5612256 | 5612032 | ID=Msa0713460-mRNA-1:five_prime_utr;Parent=Msa0713460-mRNA-1 |
| chr5_1 | five_prime_UTR | 5611786 | 5611856 | 5611786 | ID=Msa0713460-mRNA-1:five_prime_utr;Parent=Msa0713460-mRNA-1 |
| chr5_1 | CDS | 5611523 | 5611785 | 5611523 | ID=Msa0713460-mRNA-1:cds;Parent=Msa0713460-mRNA-1 |
| chr5_1 | CDS | 5610447 | 5610546 | 5610447 | ID=Msa0713460-mRNA-1:cds;Parent=Msa0713460-mRNA-1 |
| chr5_1 | CDS | 5610184 | 5610264 | 5610184 | ID=Msa0713460-mRNA-1:cds;Parent=Msa0713460-mRNA-1 |
| chr5_1 | CDS | 5609987 | 5610091 | 5609987 | ID=Msa0713460-mRNA-1:cds;Parent=Msa0713460-mRNA-1 |
| chr5_1 | CDS | 5607579 | 5607791 | 5607579 | ID=Msa0713460-mRNA-1:cds;Parent=Msa0713460-mRNA-1 |
| chr5_1 | CDS | 5606137 | 5606244 | 5606137 | ID=Msa0713460-mRNA-1:cds;Parent=Msa0713460-mRNA-1 |
| chr5_1 | three_prime_UTR | 5605765 | 5606136 | 5605765 | ID=Msa0713460-mRNA-1:three_prime_utr;Parent=Msa0713460-mRNA-1 |
| Gene Sequence |
| Protein sequence |
