AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0605670


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0605670 MtrunA17_Chr4g0035101 90.358 363 15 2 1 362 1 344 0.0 667
Msa0605670 MtrunA17_Chr3g0144641 53.207 421 115 18 1 362 1 398 3.12e-122 358
Msa0605670 MtrunA17_Chr7g0234761 51.691 207 84 6 72 264 220 424 5.64e-53 182
Msa0605670 MtrunA17_Chr5g0421111 46.332 259 102 13 122 362 319 558 2.13e-49 174
Msa0605670 MtrunA17_Chr8g0339091 60.000 145 52 3 109 251 242 382 3.27e-46 164
Msa0605670 MtrunA17_Chr8g0365941 54.088 159 68 3 91 248 238 392 3.36e-46 164
Msa0605670 MtrunA17_Chr1g0152131 45.972 211 72 6 141 337 226 408 6.25e-45 159
Msa0605670 MtrunA17_Chr8g0363921 75.258 97 24 0 158 254 148 244 3.36e-43 151
Msa0605670 MtrunA17_Chr5g0415291 59.701 134 42 2 117 250 79 200 1.24e-42 148
Msa0605670 MtrunA17_Chr7g0258161 74.194 93 24 0 154 246 166 258 4.94e-42 149
Msa0605670 MtrunA17_Chr1g0174161 62.712 118 35 3 140 253 143 255 1.86e-41 147
Msa0605670 MtrunA17_Chr8g0385911 82.143 84 14 1 158 240 142 225 1.17e-39 143
Msa0605670 MtrunA17_Chr3g0131771 75.000 92 20 1 158 246 144 235 1.52e-39 142
Msa0605670 MtrunA17_Chr6g0484271 63.636 99 35 1 141 238 134 232 1.76e-33 125
Msa0605670 MtrunA17_Chr4g0074161 71.212 66 18 1 161 226 206 270 1.24e-21 95.5
Msa0605670 MtrunA17_Chr1g0190731 68.182 66 20 1 161 226 193 257 1.36e-20 91.7
Msa0605670 MtrunA17_Chr4g0032951 56.923 65 28 0 161 225 355 419 3.74e-15 76.3
Msa0605670 MtrunA17_Chr1g0182791 52.174 69 32 1 163 231 319 386 7.32e-15 75.9
Msa0605670 MtrunA17_Chr4g0014771 53.846 65 30 0 161 225 118 182 1.25e-14 71.6
Msa0605670 MtrunA17_Chr2g0329041 52.308 65 31 0 159 223 330 394 2.03e-14 73.9
Msa0605670 MtrunA17_Chr1g0174271 48.718 78 38 1 154 229 289 366 2.39e-14 73.6
Msa0605670 MtrunA17_Chr1g0193321 45.205 73 39 1 163 235 464 535 2.39e-14 74.3
Msa0605670 MtrunA17_Chr7g0258181 45.783 83 43 1 154 234 234 316 6.52e-14 71.6
Msa0605670 MtrunA17_Chr1g0152651 45.455 88 43 2 138 225 255 337 7.30e-14 72.0
Msa0605670 MtrunA17_Chr1g0184841 63.636 66 23 1 161 226 120 184 7.48e-14 71.2
Msa0605670 MtrunA17_Chr1g0153241 40.909 88 50 2 141 227 64 150 1.13e-12 67.4
Msa0605670 MtrunA17_Chr3g0087771 49.231 65 33 0 161 225 322 386 2.15e-12 67.8
Msa0605670 MtrunA17_Chr7g0271251 34.706 170 99 7 127 289 396 560 3.32e-12 67.8
Msa0605670 MtrunA17_Chr8g0351881 47.692 65 34 0 161 225 316 380 4.33e-12 67.0
Msa0605670 MtrunA17_Chr7g0262691 37.097 124 57 5 111 226 206 316 1.06e-11 65.9
Msa0605670 MtrunA17_Chr3g0095391 36.893 103 60 3 163 262 311 411 2.18e-11 65.1
Msa0605670 MtrunA17_Chr5g0393721 34.146 123 63 3 103 225 183 287 2.89e-11 63.9
Msa0605670 MtrunA17_Chr3g0134741 51.562 64 30 1 162 225 230 292 3.52e-11 63.5
Msa0605670 MtrunA17_Chr7g0270871 45.161 62 33 1 172 233 213 273 4.62e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0605670 AT4G34530.1 38.798 366 139 11 12 332 5 330 1.88e-58 192
Msa0605670 AT2G18300.1 59.627 161 55 5 92 251 124 275 2.48e-52 177
Msa0605670 AT2G18300.2 60.897 156 51 5 92 246 124 270 2.51e-51 174
Msa0605670 AT1G68920.3 39.869 306 136 8 78 361 205 484 3.40e-51 177
Msa0605670 AT1G68920.1 41.297 293 124 7 82 361 228 485 5.20e-51 177
Msa0605670 AT1G68920.4 41.297 293 124 7 82 361 228 485 5.20e-51 177
Msa0605670 AT1G68920.2 41.297 293 124 7 82 361 228 485 5.20e-51 177
Msa0605670 AT2G18300.3 60.897 156 51 5 92 246 124 270 7.42e-51 174
Msa0605670 AT3G07340.1 53.093 194 70 4 81 274 195 367 1.08e-50 176
Msa0605670 AT3G07340.2 53.093 194 70 4 81 274 195 367 1.42e-50 175
Msa0605670 AT3G23690.1 56.742 178 67 4 109 284 140 309 4.29e-49 169
Msa0605670 AT1G26260.3 57.325 157 56 1 104 260 126 271 1.26e-48 167
Msa0605670 AT5G48560.2 49.495 198 94 3 57 248 192 389 2.34e-48 170
Msa0605670 AT1G26260.5 57.325 157 56 1 104 260 155 300 3.94e-48 167
Msa0605670 AT5G48560.1 49.495 198 94 3 57 248 192 389 5.81e-48 169
Msa0605670 AT1G26260.4 57.325 157 56 1 104 260 177 322 6.51e-48 167
Msa0605670 AT1G26260.1 57.325 157 56 1 104 260 177 322 6.51e-48 167
Msa0605670 AT1G26260.6 57.325 157 56 1 104 260 177 322 6.51e-48 167
Msa0605670 AT1G26260.2 57.325 157 56 1 104 260 177 322 6.51e-48 167
Msa0605670 AT4G36540.2 53.254 169 58 4 92 260 93 240 1.37e-47 163
Msa0605670 AT4G36540.1 56.129 155 47 4 92 246 93 226 9.11e-47 161
Msa0605670 AT1G10120.2 46.544 217 78 5 126 342 174 352 4.67e-46 161
Msa0605670 AT1G10120.1 46.544 217 78 5 126 342 174 352 4.67e-46 161
Msa0605670 AT1G59640.1 63.636 132 41 2 127 252 97 227 6.42e-45 155
Msa0605670 AT2G42300.4 71.134 97 28 0 151 247 175 271 8.81e-44 152
Msa0605670 AT1G59640.2 65.354 127 37 2 127 247 97 222 2.55e-43 153
Msa0605670 AT3G57800.2 63.415 123 40 2 152 274 195 312 2.75e-43 154
Msa0605670 AT5G50915.3 54.777 157 53 6 112 262 85 229 5.56e-43 150
Msa0605670 AT5G50915.4 54.777 157 53 6 112 262 85 229 5.56e-43 150
Msa0605670 AT5G50915.1 54.777 157 53 6 112 262 85 229 1.96e-42 149
Msa0605670 AT5G50915.2 54.777 157 53 6 112 262 85 229 1.96e-42 149
Msa0605670 AT2G42300.1 70.833 96 28 0 151 246 175 270 2.78e-42 150
Msa0605670 AT5G62610.2 77.647 85 15 1 152 232 140 224 1.18e-37 137
Msa0605670 AT5G62610.1 77.647 85 15 1 152 232 140 224 1.18e-37 137
Msa0605670 AT1G18400.2 76.250 80 19 0 159 238 143 222 2.22e-35 130
Msa0605670 AT1G18400.1 76.250 80 19 0 159 238 143 222 4.47e-35 129
Msa0605670 AT1G73830.1 77.215 79 18 0 160 238 146 224 6.46e-35 129
Msa0605670 AT1G73830.2 77.215 79 18 0 160 238 146 224 6.51e-35 129
Msa0605670 AT3G57800.1 45.882 170 40 3 152 274 195 359 2.11e-34 131
Msa0605670 AT1G25330.1 64.286 98 34 1 152 248 94 191 2.92e-34 126
Msa0605670 AT5G58010.1 58.696 92 30 3 149 236 90 177 5.31e-23 97.8
Msa0605670 AT2G24260.2 56.471 85 36 1 142 226 16 99 2.70e-22 94.7
Msa0605670 AT4G30980.1 71.212 66 18 1 161 226 130 194 7.12e-22 95.1
Msa0605670 AT4G30980.2 71.212 66 18 1 161 226 178 242 1.11e-21 95.1
Msa0605670 AT2G24260.1 56.471 85 36 1 142 226 119 202 1.84e-21 94.4
Msa0605670 AT2G42300.5 70.000 50 15 0 151 200 175 224 3.23e-18 83.2
Msa0605670 AT2G42300.3 70.000 50 15 0 151 200 175 224 3.23e-18 83.2
Msa0605670 AT2G42300.2 70.000 50 15 0 151 200 175 224 4.31e-18 82.8
Msa0605670 AT2G20180.7 53.968 63 28 1 164 226 210 271 2.17e-14 74.3
Msa0605670 AT2G20180.1 53.968 63 28 1 164 226 210 271 2.17e-14 74.3
Msa0605670 AT2G20180.5 53.968 63 28 1 164 226 210 271 2.17e-14 74.3
Msa0605670 AT2G20180.4 53.968 63 28 1 164 226 281 342 2.24e-14 74.7
Msa0605670 AT2G20180.6 53.968 63 28 1 164 226 281 342 2.24e-14 74.7
Msa0605670 AT2G20180.2 53.968 63 28 1 164 226 281 342 2.24e-14 74.7
Msa0605670 AT2G20180.3 53.968 63 28 1 164 226 281 342 2.24e-14 74.7
Msa0605670 AT1G09530.3 46.479 71 37 1 156 226 332 401 3.64e-14 73.9
Msa0605670 AT1G09530.2 46.479 71 37 1 156 226 332 401 3.64e-14 73.9
Msa0605670 AT1G09530.5 46.479 71 37 1 156 226 332 401 3.64e-14 73.9
Msa0605670 AT1G09530.1 46.479 71 37 1 156 226 332 401 3.64e-14 73.9
Msa0605670 AT1G09530.4 46.479 71 37 1 156 226 332 401 3.64e-14 73.9
Msa0605670 AT1G09530.6 46.479 71 37 1 156 226 332 401 3.64e-14 73.9
Msa0605670 AT4G09180.1 50.746 67 33 0 159 225 182 248 5.80e-14 71.6
Msa0605670 AT2G42280.1 36.667 120 72 2 105 224 227 342 7.01e-14 72.4
Msa0605670 AT2G42280.3 37.705 122 70 3 105 224 227 344 7.81e-14 72.4
Msa0605670 AT1G51140.1 54.688 64 29 0 161 224 304 367 9.30e-14 72.4
Msa0605670 AT4G28790.1 35.043 117 67 3 163 278 273 381 9.44e-14 72.4
Msa0605670 AT4G28800.1 28.634 227 133 8 50 270 147 350 1.40e-13 72.0
Msa0605670 AT4G02590.3 51.724 87 33 2 148 226 62 147 1.46e-13 70.1
Msa0605670 AT4G02590.2 51.724 87 33 2 148 226 125 210 2.21e-13 70.5
Msa0605670 AT4G02590.1 51.724 87 33 2 148 226 125 210 2.21e-13 70.5
Msa0605670 AT1G03040.2 62.121 66 24 1 161 226 139 203 2.88e-13 70.1
Msa0605670 AT1G35460.1 50.769 65 32 0 161 225 181 245 2.93e-13 69.7
Msa0605670 AT1G03040.1 62.121 66 24 1 161 226 144 208 3.22e-13 70.1
Msa0605670 AT4G28815.2 55.172 58 25 1 164 221 71 127 3.56e-13 68.9
Msa0605670 AT2G20180.8 52.459 61 28 1 163 223 280 339 3.87e-13 70.1
Msa0605670 AT1G03040.3 62.121 66 24 1 161 226 144 208 5.64e-13 69.7
Msa0605670 AT4G28815.1 55.172 58 25 1 164 221 147 203 1.13e-12 68.6
Msa0605670 AT1G27740.1 38.938 113 68 1 113 225 119 230 1.92e-12 67.0
Msa0605670 AT4G28800.2 31.461 178 102 6 50 222 159 321 5.00e-12 67.4
Msa0605670 AT2G14760.1 39.655 116 56 4 120 225 189 300 1.11e-11 65.5
Msa0605670 AT2G46970.3 41.250 80 41 2 159 233 194 272 1.14e-11 65.9
Msa0605670 AT2G46970.1 41.250 80 41 2 159 233 216 294 1.19e-11 65.9
Msa0605670 AT2G46970.2 41.250 80 41 2 159 233 185 263 1.19e-11 65.9
Msa0605670 AT4G33880.1 43.011 93 49 3 136 225 238 329 3.95e-11 64.3
Msa0605670 AT4G00050.2 49.231 65 32 1 161 225 105 168 6.86e-11 63.2

Find 82 sgRNAs with CRISPR-Local

Find 161 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTGTTTGCTCAGTGATTT+TGG 0.069577 4_2:-51683869 None:intergenic
TTAAAGTACATAACATATTT+TGG 0.158845 4_2:+51685871 Msa0605670:three_prime_UTR
CATCTGATCCATTGCAAATT+AGG 0.160930 4_2:+51686023 Msa0605670:three_prime_UTR
CACTTTGATCCTCTTGTCTT+TGG 0.165749 4_2:-51683827 None:intergenic
GGGATAGTCCCTCCGGAAAT+TGG 0.186320 4_2:+51685189 Msa0605670:CDS
GTTGATCTTGTTGTTTGTTT+TGG 0.200209 4_2:-51683497 None:intergenic
TTACATTGTCTTAACACTTC+TGG 0.231856 4_2:+51683523 Msa0605670:CDS
CTGTTACATTCTCCTTCTTT+TGG 0.239090 4_2:+51685932 Msa0605670:three_prime_UTR
GACATTTCTGATTGCATCAT+TGG 0.242720 4_2:-51685093 None:intergenic
TTCCTTCGAACCCCAATTTC+CGG 0.243538 4_2:-51685201 None:intergenic
GCATTGTGTCCTTACCTCTT+TGG 0.264053 4_2:-51684817 None:intergenic
AATTTGTATCTACCTGTAAA+TGG 0.288243 4_2:-51685480 None:intergenic
TTTCCTTCTCAACCATTTAC+AGG 0.299320 4_2:+51685468 Msa0605670:CDS
GATGAGTCAAGAAAGATTTC+AGG 0.310824 4_2:-51685252 None:intergenic
TGCAGGTTTAATGTCCGTTT+TGG 0.317732 4_2:-51686092 None:intergenic
GTTGGTTGTGATTCTGCTCT+TGG 0.325858 4_2:+51683706 Msa0605670:CDS
CGCTATGCTCTTTGTAGAAA+TGG 0.333391 4_2:-51683392 None:intergenic
TGGTGGATTGATAAACAATA+TGG 0.350380 4_2:+51685167 Msa0605670:CDS
GGATAGTCCCTCCGGAAATT+GGG 0.350458 4_2:+51685190 Msa0605670:CDS
CATTAAACCTGCAAGAAATT+CGG 0.370651 4_2:+51686102 Msa0605670:three_prime_UTR
CAACACTGTCATGTCGGAAA+TGG 0.383436 4_2:-51683563 None:intergenic
AACAAAATTGCAGGCAAAGC+TGG 0.393233 4_2:+51684504 Msa0605670:CDS
TCATGAACCGAATTTCTTGC+AGG 0.397044 4_2:-51686109 None:intergenic
ATCTGATCCATTGCAAATTA+GGG 0.401608 4_2:+51686024 Msa0605670:three_prime_UTR
CAATGTTGAAGTCAAGTCTT+GGG 0.403046 4_2:-51684782 None:intergenic
CAAAAGAAGGAGAATGTAAC+AGG 0.403302 4_2:-51685931 None:intergenic
TGATGAATTGTTTGCCAAAG+AGG 0.429741 4_2:+51684803 Msa0605670:CDS
CCAGGATGCAACAAAATTGC+AGG 0.430070 4_2:+51684495 Msa0605670:CDS
TTCAGAGTGTGCAATGTACT+AGG 0.439399 4_2:-51683461 None:intergenic
GCTCGAACATGAATGTAATC+AGG 0.466193 4_2:-51683985 None:intergenic
TCAATGTTGAAGTCAAGTCT+TGG 0.479932 4_2:-51684783 None:intergenic
GAATTGAATTGAAGATATGC+AGG 0.482069 4_2:-51685120 None:intergenic
AAAGAGAGAGATTTGTGAGC+AGG 0.484444 4_2:+51686000 Msa0605670:three_prime_UTR
GGTTCCAAGGAAAATTCAAA+AGG 0.493943 4_2:+51683940 Msa0605670:CDS
TACGTGCTAAACTACGCACT+TGG 0.495967 4_2:-51683432 None:intergenic
ATCAAAGTGAGTGTTGAAGA+AGG 0.498660 4_2:+51683841 Msa0605670:CDS
TCGAAGAAACCATTAAGAAA+AGG 0.502237 4_2:+51683776 Msa0605670:CDS
AACACTTCTGGAAATCTAGT+AGG 0.504501 4_2:+51683535 Msa0605670:CDS
TAACTTGAATGTCCAAAAGA+AGG 0.504694 4_2:-51685944 None:intergenic
ATATCCTACCATCCTCAACT+TGG 0.507057 4_2:+51685388 Msa0605670:CDS
AAAATCACCTTCCCAAGTTG+AGG 0.508180 4_2:-51685400 None:intergenic
CAATATGGGGATAGTCCCTC+CGG 0.510922 4_2:+51685182 Msa0605670:CDS
TATTTGCAAGATTTAGTACC+AGG 0.510967 4_2:+51684477 Msa0605670:CDS
GGTGGATTGATAAACAATAT+GGG 0.517497 4_2:+51685168 Msa0605670:CDS
TAACTCTATGAAACCCGACC+CGG 0.524469 4_2:+51683741 Msa0605670:CDS
TGAAGCTAGCAATCTGAAGA+TGG 0.529573 4_2:+51685789 Msa0605670:CDS
GTCTCTTCAAAGACAAGTTG+AGG 0.543289 4_2:+51684557 Msa0605670:CDS
CAACAACTAGTTTCATGTTG+TGG 0.545151 4_2:+51685147 Msa0605670:CDS
AGAGAAAATTGTGATGATGT+TGG 0.545309 4_2:+51683919 Msa0605670:CDS
AAACATTGAATCAAATGCAA+TGG 0.546511 4_2:-51686063 None:intergenic
ATTGAATCAAATGCAATGGA+AGG 0.547369 4_2:-51686059 None:intergenic
CTCCGGAAATTGGGGTTCGA+AGG 0.548238 4_2:+51685199 Msa0605670:CDS
CTACCTGTAAATGGTTGAGA+AGG 0.549856 4_2:-51685471 None:intergenic
CATTTCCGACATGACAGTGT+TGG 0.552355 4_2:+51683564 Msa0605670:CDS
CTTCCCAAGTTGAGGATGGT+AGG 0.556292 4_2:-51685392 None:intergenic
CAACTAGTTTCATGTTGTGG+TGG 0.563540 4_2:+51685150 Msa0605670:CDS
AAAATCACTGAGCAAACAAA+GGG 0.564488 4_2:+51683871 Msa0605670:CDS
GATAGTCCCTCCGGAAATTG+GGG 0.565816 4_2:+51685191 Msa0605670:CDS
ATTGCAAATTAGGGTGTTGG+TGG 0.566623 4_2:+51686033 Msa0605670:three_prime_UTR
TTGTGATGATGTTGGTTCCA+AGG 0.568124 4_2:+51683927 Msa0605670:CDS
TCCATTGCAAATTAGGGTGT+TGG 0.573419 4_2:+51686030 Msa0605670:three_prime_UTR
TCAGGTAAAGATGCAGATGC+CGG 0.578456 4_2:-51685234 None:intergenic
TCGAAGGAACATTAATGCAC+CGG 0.582886 4_2:+51685215 Msa0605670:CDS
CAAAATCACTGAGCAAACAA+AGG 0.583100 4_2:+51683870 Msa0605670:CDS
CTACCATCCTCAACTTGGGA+AGG 0.586675 4_2:+51685393 Msa0605670:CDS
ACCAACACCCTAATTTGCAA+TGG 0.594011 4_2:-51686031 None:intergenic
ACGTGCTAAACTACGCACTT+GGG 0.595977 4_2:-51683431 None:intergenic
TATCCTACCATCCTCAACTT+GGG 0.602359 4_2:+51685389 Msa0605670:CDS
AATTGAATTGAAGATATGCA+GGG 0.606589 4_2:-51685119 None:intergenic
TCTTTCCAACACTGTCATGT+CGG 0.609762 4_2:-51683569 None:intergenic
ACTTCTGGAAATCTAGTAGG+AGG 0.609823 4_2:+51683538 Msa0605670:CDS
TCACCTTCCCAAGTTGAGGA+TGG 0.614865 4_2:-51685396 None:intergenic
CTTCGAACCCCAATTTCCGG+AGG 0.622595 4_2:-51685198 None:intergenic
TTCGAACCCCAATTTCCGGA+GGG 0.626102 4_2:-51685197 None:intergenic
TGTTGGAAAGACAAAGAGCA+AGG 0.628279 4_2:+51683581 Msa0605670:CDS
AACTCTATGAAACCCGACCC+GGG 0.629719 4_2:+51683742 Msa0605670:CDS
GAAAAGGAAAGCTGATAACA+AGG 0.638853 4_2:+51683792 Msa0605670:CDS
ATATGAAGTCCAAAGACAAG+AGG 0.657403 4_2:+51683818 Msa0605670:CDS
ATTCATGTTCGAGCACGTCG+CGG 0.664373 4_2:+51683994 Msa0605670:CDS
GTGGATTGATAAACAATATG+GGG 0.684555 4_2:+51685169 Msa0605670:CDS
CATGAACAAGATCAACAACA+CGG 0.698507 4_2:+51683634 Msa0605670:CDS
AAGGAAAGCTGATAACAAGG+TGG 0.715030 4_2:+51683795 Msa0605670:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAAGTTTAAGTTTATAATA+TGG + chr4_2:51684668-51684687 Msa0605670:intron 10.0%
!!! ATTTTATGGTTTTAGTAAAA+AGG + chr4_2:51684843-51684862 Msa0605670:intron 15.0%
!! TTAAATTATTTGATCTTTAC+AGG + chr4_2:51685053-51685072 Msa0605670:intron 15.0%
!! AATCATATTAATGATTGATT+AGG - chr4_2:51685329-51685348 None:intergenic 15.0%
!!! TTAAAGTACATAACATATTT+TGG + chr4_2:51685871-51685890 Msa0605670:three_prime_UTR 15.0%
!!! TCTCTTAATTTGTCATTATT+TGG + chr4_2:51684085-51684104 Msa0605670:intron 20.0%
!! TAGTAAAAAATGATGTAACA+CGG + chr4_2:51684156-51684175 Msa0605670:intron 20.0%
!!! TTATTTTGTGCAATATATGT+TGG + chr4_2:51684356-51684375 Msa0605670:intron 20.0%
!!! TGATTTTTCTGTTTATTACT+TGG + chr4_2:51684386-51684405 Msa0605670:intron 20.0%
!! TCATGATAAATTAGTTACTT+AGG + chr4_2:51684623-51684642 Msa0605670:intron 20.0%
!!! AAATCTTCATTTTGATGAAA+AGG - chr4_2:51685631-51685650 None:intergenic 20.0%
!!! TTTCTTATTCTTTTTTCTAG+TGG - chr4_2:51685978-51685997 None:intergenic 20.0%
!!! TTGATCTTGTTGTTTGTTTT+GGG - chr4_2:51683499-51683518 None:intergenic 25.0%
!! TTCTTCACAACAATTTTTGA+TGG + chr4_2:51683684-51683703 Msa0605670:CDS 25.0%
! ATGCTAAAATTACCGTTAAT+AGG + chr4_2:51684282-51684301 Msa0605670:intron 25.0%
! GTTTATTACTTGGAGTTTAA+AGG + chr4_2:51684396-51684415 Msa0605670:intron 25.0%
!! CAAAAAGCACAAATCATTAA+TGG - chr4_2:51685008-51685027 None:intergenic 25.0%
! AATTGAATTGAAGATATGCA+GGG - chr4_2:51685122-51685141 None:intergenic 25.0%
!!! GATTAGGAACAATATTTTAG+AGG - chr4_2:51685313-51685332 None:intergenic 25.0%
!! TTTTCAAAATCTTCATAGTG+TGG + chr4_2:51685419-51685438 Msa0605670:CDS 25.0%
! AATTTGTATCTACCTGTAAA+TGG - chr4_2:51685483-51685502 None:intergenic 25.0%
!! TTTTATCTGCTAATGATTGA+AGG + chr4_2:51685657-51685676 Msa0605670:intron 25.0%
! ATGATTGAAGGTTGAAAATT+CGG + chr4_2:51685669-51685688 Msa0605670:intron 25.0%
!!! ATGTTTTGTTTTATGACTGT+AGG + chr4_2:51685760-51685779 Msa0605670:intron 25.0%
!!! GAATTTTGATAAGAAGCATT+TGG - chr4_2:51685843-51685862 None:intergenic 25.0%
! AAACATTGAATCAAATGCAA+TGG - chr4_2:51686066-51686085 None:intergenic 25.0%
!!! CAATGTTTTGAAAACCAAAA+CGG + chr4_2:51686078-51686097 Msa0605670:three_prime_UTR 25.0%
!!! GTTGATCTTGTTGTTTGTTT+TGG - chr4_2:51683500-51683519 None:intergenic 30.0%
TTACATTGTCTTAACACTTC+TGG + chr4_2:51683523-51683542 Msa0605670:CDS 30.0%
! GTTCATTTTCATGTTCATGT+TGG - chr4_2:51683615-51683634 None:intergenic 30.0%
!! TCACAACAATTTTTGATGGT+TGG + chr4_2:51683688-51683707 Msa0605670:CDS 30.0%
TCGAAGAAACCATTAAGAAA+AGG + chr4_2:51683776-51683795 Msa0605670:CDS 30.0%
! ATCAGCTTTCCTTTTCTTAA+TGG - chr4_2:51683788-51683807 None:intergenic 30.0%
AAAATCACTGAGCAAACAAA+GGG + chr4_2:51683871-51683890 Msa0605670:CDS 30.0%
! AGAGAAAATTGTGATGATGT+TGG + chr4_2:51683919-51683938 Msa0605670:CDS 30.0%
! TGAACCTTTTGAATTTTCCT+TGG - chr4_2:51683947-51683966 None:intergenic 30.0%
CTAAAATTACCGTTAATAGG+AGG + chr4_2:51684285-51684304 Msa0605670:intron 30.0%
TATTTGCAAGATTTAGTACC+AGG + chr4_2:51684477-51684496 Msa0605670:CDS 30.0%
TTATCATGAGTGATGTCAAA+AGG - chr4_2:51684612-51684631 None:intergenic 30.0%
! GGACACAATGCAAAATTTTA+TGG + chr4_2:51684829-51684848 Msa0605670:intron 30.0%
TCTACATTTGACCGTAATTA+AGG + chr4_2:51684926-51684945 Msa0605670:intron 30.0%
GAATTGAATTGAAGATATGC+AGG - chr4_2:51685123-51685142 None:intergenic 30.0%
!! TGGTGGATTGATAAACAATA+TGG + chr4_2:51685167-51685186 Msa0605670:CDS 30.0%
!! GGTGGATTGATAAACAATAT+GGG + chr4_2:51685168-51685187 Msa0605670:CDS 30.0%
! GTGGATTGATAAACAATATG+GGG + chr4_2:51685169-51685188 Msa0605670:CDS 30.0%
!! AGGAACAATATTTTAGAGGA+CGG - chr4_2:51685309-51685328 None:intergenic 30.0%
AAGGACTTATCAATATCTGT+GGG - chr4_2:51685612-51685631 None:intergenic 30.0%
AAAGGACTTATCAATATCTG+TGG - chr4_2:51685613-51685632 None:intergenic 30.0%
CTTTGCAAACCTTTATATTC+CGG + chr4_2:51685701-51685720 Msa0605670:intron 30.0%
CTTTATATTCCGGAAAAACA+CGG + chr4_2:51685711-51685730 Msa0605670:intron 30.0%
TAACTTGAATGTCCAAAAGA+AGG - chr4_2:51685947-51685966 None:intergenic 30.0%
ATCTGATCCATTGCAAATTA+GGG + chr4_2:51686024-51686043 Msa0605670:three_prime_UTR 30.0%
ATTGAATCAAATGCAATGGA+AGG - chr4_2:51686062-51686081 None:intergenic 30.0%
CATTAAACCTGCAAGAAATT+CGG + chr4_2:51686102-51686121 Msa0605670:three_prime_UTR 30.0%
! AACACTTCTGGAAATCTAGT+AGG + chr4_2:51683535-51683554 Msa0605670:CDS 35.0%
CATGAACAAGATCAACAACA+CGG + chr4_2:51683634-51683653 Msa0605670:CDS 35.0%
GAAAAGGAAAGCTGATAACA+AGG + chr4_2:51683792-51683811 Msa0605670:CDS 35.0%
ATATGAAGTCCAAAGACAAG+AGG + chr4_2:51683818-51683837 Msa0605670:CDS 35.0%
!! ATCAAAGTGAGTGTTGAAGA+AGG + chr4_2:51683841-51683860 Msa0605670:CDS 35.0%
!! CTTTGTTTGCTCAGTGATTT+TGG - chr4_2:51683872-51683891 None:intergenic 35.0%
CAAAATCACTGAGCAAACAA+AGG + chr4_2:51683870-51683889 Msa0605670:CDS 35.0%
GGTTCCAAGGAAAATTCAAA+AGG + chr4_2:51683940-51683959 Msa0605670:CDS 35.0%
TATCCATCAATCATGATCGT+CGG - chr4_2:51684195-51684214 None:intergenic 35.0%
CAGATTCTACCTCCTATTAA+CGG - chr4_2:51684297-51684316 None:intergenic 35.0%
GAAGGGAAAAAATAAGCGAA+AGG + chr4_2:51684448-51684467 Msa0605670:CDS 35.0%
TCATTGACAAGAACTGCATT+TGG - chr4_2:51684746-51684765 None:intergenic 35.0%
CAATGTTGAAGTCAAGTCTT+GGG - chr4_2:51684785-51684804 None:intergenic 35.0%
TCAATGTTGAAGTCAAGTCT+TGG - chr4_2:51684786-51684805 None:intergenic 35.0%
TGATGAATTGTTTGCCAAAG+AGG + chr4_2:51684803-51684822 Msa0605670:CDS 35.0%
AATTGTTTGCCAAAGAGGTA+AGG + chr4_2:51684808-51684827 Msa0605670:intron 35.0%
AGATGATACAGCCTTAATCA+CGG - chr4_2:51684909-51684928 None:intergenic 35.0%
GACTCATAACGCCTTAATTA+CGG - chr4_2:51684940-51684959 None:intergenic 35.0%
GACATTTCTGATTGCATCAT+TGG - chr4_2:51685096-51685115 None:intergenic 35.0%
! CAACAACTAGTTTCATGTTG+TGG + chr4_2:51685147-51685166 Msa0605670:CDS 35.0%
GATGAGTCAAGAAAGATTTC+AGG - chr4_2:51685255-51685274 None:intergenic 35.0%
!! CATAGTGTGGATTTTGATCA+AGG + chr4_2:51685432-51685451 Msa0605670:CDS 35.0%
TTTCCTTCTCAACCATTTAC+AGG + chr4_2:51685468-51685487 Msa0605670:CDS 35.0%
!! CTTACTACTTCTAAGATTGC+AGG - chr4_2:51685536-51685555 None:intergenic 35.0%
AGGACTTATCAATATCTGTG+GGG - chr4_2:51685611-51685630 None:intergenic 35.0%
AAAGGTTTGCAAAGTAACCA+CGG - chr4_2:51685695-51685714 None:intergenic 35.0%
! CGTGTTTTTCCGGAATATAA+AGG - chr4_2:51685713-51685732 None:intergenic 35.0%
CAAAAGAAGGAGAATGTAAC+AGG - chr4_2:51685934-51685953 None:intergenic 35.0%
! CTGTTACATTCTCCTTCTTT+TGG + chr4_2:51685932-51685951 Msa0605670:three_prime_UTR 35.0%
CATCTGATCCATTGCAAATT+AGG + chr4_2:51686023-51686042 Msa0605670:three_prime_UTR 35.0%
CGCTATGCTCTTTGTAGAAA+TGG - chr4_2:51683395-51683414 None:intergenic 40.0%
TTCAGAGTGTGCAATGTACT+AGG - chr4_2:51683464-51683483 None:intergenic 40.0%
! ACTTCTGGAAATCTAGTAGG+AGG + chr4_2:51683538-51683557 Msa0605670:CDS 40.0%
TCTTTCCAACACTGTCATGT+CGG - chr4_2:51683572-51683591 None:intergenic 40.0%
TGTTGGAAAGACAAAGAGCA+AGG + chr4_2:51683581-51683600 Msa0605670:CDS 40.0%
!!! ACAACACGGACGTTACTTTT+CGG + chr4_2:51683648-51683667 Msa0605670:CDS 40.0%
AAGGAAAGCTGATAACAAGG+TGG + chr4_2:51683795-51683814 Msa0605670:CDS 40.0%
CACTTTGATCCTCTTGTCTT+TGG - chr4_2:51683830-51683849 None:intergenic 40.0%
!! TTGTGATGATGTTGGTTCCA+AGG + chr4_2:51683927-51683946 Msa0605670:CDS 40.0%
GCTCGAACATGAATGTAATC+AGG - chr4_2:51683988-51684007 None:intergenic 40.0%
ATTCCGACGATCATGATTGA+TGG + chr4_2:51684189-51684208 Msa0605670:intron 40.0%
GCACAAAACAGAACAAACGT+TGG - chr4_2:51684422-51684441 None:intergenic 40.0%
! ACGTTTGTTCTGTTTTGTGC+AGG + chr4_2:51684422-51684441 Msa0605670:intron 40.0%
! TCTGTTTTGTGCAGGTTAGA+AGG + chr4_2:51684430-51684449 Msa0605670:intron 40.0%
! CTGTTTTGTGCAGGTTAGAA+GGG + chr4_2:51684431-51684450 Msa0605670:intron 40.0%
AACAAAATTGCAGGCAAAGC+TGG + chr4_2:51684504-51684523 Msa0605670:CDS 40.0%
GTCTCTTCAAAGACAAGTTG+AGG + chr4_2:51684557-51684576 Msa0605670:CDS 40.0%
CAAAAGGCAGAGAATGAAAC+AGG - chr4_2:51684596-51684615 None:intergenic 40.0%
!! GGTTTTAGTAAAAAGGTCCG+CGG + chr4_2:51684850-51684869 Msa0605670:intron 40.0%
GGCATCAAAAATCATGATGC+TGG - chr4_2:51684876-51684895 None:intergenic 40.0%
! GCATCATGATTTTTGATGCC+AGG + chr4_2:51684876-51684895 Msa0605670:intron 40.0%
TGTTGTGATTCGCGATATTG+TGG - chr4_2:51684982-51685001 None:intergenic 40.0%
! CAACTAGTTTCATGTTGTGG+TGG + chr4_2:51685150-51685169 Msa0605670:CDS 40.0%
TCGAAGGAACATTAATGCAC+CGG + chr4_2:51685215-51685234 Msa0605670:CDS 40.0%
ATATCCTACCATCCTCAACT+TGG + chr4_2:51685388-51685407 Msa0605670:CDS 40.0%
TATCCTACCATCCTCAACTT+GGG + chr4_2:51685389-51685408 Msa0605670:CDS 40.0%
AAAATCACCTTCCCAAGTTG+AGG - chr4_2:51685403-51685422 None:intergenic 40.0%
CTACCTGTAAATGGTTGAGA+AGG - chr4_2:51685474-51685493 None:intergenic 40.0%
!! ACTTCTAAGATTGCAGGCTA+AGG - chr4_2:51685530-51685549 None:intergenic 40.0%
! TCGAATCTACCGTGTTTTTC+CGG - chr4_2:51685723-51685742 None:intergenic 40.0%
AAAACACGGTAGATTCGATG+CGG + chr4_2:51685725-51685744 Msa0605670:intron 40.0%
TGAAGCTAGCAATCTGAAGA+TGG + chr4_2:51685789-51685808 Msa0605670:CDS 40.0%
TTGGAGTGAGCAAAAAGTTC+AGG - chr4_2:51685824-51685843 None:intergenic 40.0%
AAAGAGAGAGATTTGTGAGC+AGG + chr4_2:51686000-51686019 Msa0605670:three_prime_UTR 40.0%
TCCATTGCAAATTAGGGTGT+TGG + chr4_2:51686030-51686049 Msa0605670:three_prime_UTR 40.0%
! ACCAACACCCTAATTTGCAA+TGG - chr4_2:51686034-51686053 None:intergenic 40.0%
!! ATTGCAAATTAGGGTGTTGG+TGG + chr4_2:51686033-51686052 Msa0605670:three_prime_UTR 40.0%
! TGCAGGTTTAATGTCCGTTT+TGG - chr4_2:51686095-51686114 None:intergenic 40.0%
TCATGAACCGAATTTCTTGC+AGG - chr4_2:51686112-51686131 None:intergenic 40.0%
ACGTGCTAAACTACGCACTT+GGG - chr4_2:51683434-51683453 None:intergenic 45.0%
TACGTGCTAAACTACGCACT+TGG - chr4_2:51683435-51683454 None:intergenic 45.0%
CAACACTGTCATGTCGGAAA+TGG - chr4_2:51683566-51683585 None:intergenic 45.0%
CATTTCCGACATGACAGTGT+TGG + chr4_2:51683564-51683583 Msa0605670:CDS 45.0%
!!! CAACACGGACGTTACTTTTC+GGG + chr4_2:51683649-51683668 Msa0605670:CDS 45.0%
!!! GGACGTTACTTTTCGGGAAA+TGG + chr4_2:51683655-51683674 Msa0605670:CDS 45.0%
GTTGGTTGTGATTCTGCTCT+TGG + chr4_2:51683706-51683725 Msa0605670:CDS 45.0%
TAACTCTATGAAACCCGACC+CGG + chr4_2:51683741-51683760 Msa0605670:CDS 45.0%
! TCTTCGACGTTTTCGAAACC+CGG - chr4_2:51683763-51683782 None:intergenic 45.0%
! CCTGCAATTTTGTTGCATCC+TGG - chr4_2:51684498-51684517 None:intergenic 45.0%
CCAGGATGCAACAAAATTGC+AGG + chr4_2:51684495-51684514 Msa0605670:CDS 45.0%
GCATTGTGTCCTTACCTCTT+TGG - chr4_2:51684820-51684839 None:intergenic 45.0%
AAAAATCATGATGCTGGCCG+CGG - chr4_2:51684870-51684889 None:intergenic 45.0%
CGCGATATTGTGGATAATCG+CGG - chr4_2:51684972-51684991 None:intergenic 45.0%
TTCCTTCGAACCCCAATTTC+CGG - chr4_2:51685204-51685223 None:intergenic 45.0%
TCAGGTAAAGATGCAGATGC+CGG - chr4_2:51685237-51685256 None:intergenic 45.0%
AAACACGGTAGATTCGATGC+GGG + chr4_2:51685726-51685745 Msa0605670:intron 45.0%
!!! TTTTACTAAATTTTTTAATT+TGG + chr4_2:51684255-51684274 Msa0605670:intron 5.0%
AACTCTATGAAACCCGACCC+GGG + chr4_2:51683742-51683761 Msa0605670:CDS 50.0%
! CTTCGACGTTTTCGAAACCC+GGG - chr4_2:51683762-51683781 None:intergenic 50.0%
ATTCATGTTCGAGCACGTCG+CGG + chr4_2:51683994-51684013 Msa0605670:CDS 50.0%
TACAGCCTTAATCACGGTCG+TGG - chr4_2:51684903-51684922 None:intergenic 50.0%
CAATATGGGGATAGTCCCTC+CGG + chr4_2:51685182-51685201 Msa0605670:CDS 50.0%
GGATAGTCCCTCCGGAAATT+GGG + chr4_2:51685190-51685209 Msa0605670:CDS 50.0%
GATAGTCCCTCCGGAAATTG+GGG + chr4_2:51685191-51685210 Msa0605670:CDS 50.0%
TTCGAACCCCAATTTCCGGA+GGG - chr4_2:51685200-51685219 None:intergenic 50.0%
TAGAGGACGGATACACAGAG+AGG - chr4_2:51685296-51685315 None:intergenic 50.0%
! CTTCCCAAGTTGAGGATGGT+AGG - chr4_2:51685395-51685414 None:intergenic 50.0%
CTACCATCCTCAACTTGGGA+AGG + chr4_2:51685393-51685412 Msa0605670:CDS 50.0%
! TCACCTTCCCAAGTTGAGGA+TGG - chr4_2:51685399-51685418 None:intergenic 50.0%
GAAGGTTGAAAATTCGGCCG+TGG + chr4_2:51685675-51685694 Msa0605670:intron 50.0%
! ACGTTTTCGAAACCCGGGTC+GGG - chr4_2:51683757-51683776 None:intergenic 55.0%
! GACGTTTTCGAAACCCGGGT+CGG - chr4_2:51683758-51683777 None:intergenic 55.0%
CTTAATCACGGTCGTGGACC+TGG - chr4_2:51684897-51684916 None:intergenic 55.0%
CAGGTCCACGACCGTGATTA+AGG + chr4_2:51684895-51684914 Msa0605670:intron 55.0%
GGGATAGTCCCTCCGGAAAT+TGG + chr4_2:51685189-51685208 Msa0605670:CDS 55.0%
CTTCGAACCCCAATTTCCGG+AGG - chr4_2:51685201-51685220 None:intergenic 55.0%
CTCCGGAAATTGGGGTTCGA+AGG + chr4_2:51685199-51685218 Msa0605670:CDS 55.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 51683350 51686136 51683350 ID=Msa0605670;Name=Msa0605670
chr4_2 mRNA 51683350 51686136 51683350 ID=Msa0605670-mRNA-1;Parent=Msa0605670;Name=Msa0605670-mRNA-1;_AED=0.12;_eAED=0.12;_QI=170|1|1|1|1|1|6|317|362
chr4_2 exon 51683350 51684050 51683350 ID=Msa0605670-mRNA-1:exon:12384;Parent=Msa0605670-mRNA-1
chr4_2 exon 51684444 51684578 51684444 ID=Msa0605670-mRNA-1:exon:12385;Parent=Msa0605670-mRNA-1
chr4_2 exon 51684753 51684824 51684753 ID=Msa0605670-mRNA-1:exon:12386;Parent=Msa0605670-mRNA-1
chr4_2 exon 51685075 51685284 51685075 ID=Msa0605670-mRNA-1:exon:12387;Parent=Msa0605670-mRNA-1
chr4_2 exon 51685387 51685489 51685387 ID=Msa0605670-mRNA-1:exon:12388;Parent=Msa0605670-mRNA-1
chr4_2 exon 51685782 51686136 51685782 ID=Msa0605670-mRNA-1:exon:12389;Parent=Msa0605670-mRNA-1
chr4_2 five_prime_UTR 51683350 51683519 51683350 ID=Msa0605670-mRNA-1:five_prime_utr;Parent=Msa0605670-mRNA-1
chr4_2 CDS 51683520 51684050 51683520 ID=Msa0605670-mRNA-1:cds;Parent=Msa0605670-mRNA-1
chr4_2 CDS 51684444 51684578 51684444 ID=Msa0605670-mRNA-1:cds;Parent=Msa0605670-mRNA-1
chr4_2 CDS 51684753 51684824 51684753 ID=Msa0605670-mRNA-1:cds;Parent=Msa0605670-mRNA-1
chr4_2 CDS 51685075 51685284 51685075 ID=Msa0605670-mRNA-1:cds;Parent=Msa0605670-mRNA-1
chr4_2 CDS 51685387 51685489 51685387 ID=Msa0605670-mRNA-1:cds;Parent=Msa0605670-mRNA-1
chr4_2 CDS 51685782 51685819 51685782 ID=Msa0605670-mRNA-1:cds;Parent=Msa0605670-mRNA-1
chr4_2 three_prime_UTR 51685820 51686136 51685820 ID=Msa0605670-mRNA-1:three_prime_utr;Parent=Msa0605670-mRNA-1
Gene Sequence

>Msa0605670

ATGTTACATTGTCTTAACACTTCTGGAAATCTAGTAGGAGGAACCATTTCCGACATGACAGTGTTGGAAAGACAAAGAGCAAGGAAGAAGTTCCAACATGAACATGAAAATGAACATGAACAAGATCAACAACACGGACGTTACTTTTCGGGAAATGGTTTCTCTTCTTCACAACAATTTTTGATGGTTGGTTGTGATTCTGCTCTTGGTGAAGTTGTAGCTAACTCTATGAAACCCGACCCGGGTTTCGAAAACGTCGAAGAAACCATTAAGAAAAGGAAAGCTGATAACAAGGTGGATATGAAGTCCAAAGACAAGAGGATCAAAGTGAGTGTTGAAGAAGGTGAATCCAAAATCACTGAGCAAACAAAGGGACAGAAGAATACAAAGTTGAAAAATAGAGAAAATTGTGATGATGTTGGTTCCAAGGAAAATTCAAAAGGTTCAGAGATTCAAAATCAAAAGCCTGATTACATTCATGTTCGAGCACGTCGCGGTCAAGCTACTGATAGTCATAGCTTAGCTGAAAGAGTTAGAAGGGAAAAAATAAGCGAAAGGATGAAGTATTTGCAAGATTTAGTACCAGGATGCAACAAAATTGCAGGCAAAGCTGGAATGCTTGATGAAATTATTAACTATGTTCAGTCTCTTCAAAGACAAGTTGAGTTCTTGTCAATGAAATTAGCAGCTGTAAACCCAAGACTTGACTTCAACATTGATGAATTGTTTGCCAAAGAGGTGTTTACTCAAAATTTTCCAATGATGCAATCAGAAATGTCTAACCCTGCATATCTTCAATTCAATTCAACACAACAACTAGTTTCATGTTGTGGTGGATTGATAAACAATATGGGGATAGTCCCTCCGGAAATTGGGGTTCGAAGGAACATTAATGCACCGGCATCTGCATCTTTACCTGAAATCTTTCTTGACTCATCATGTTTCACTCATATCCTACCATCCTCAACTTGGGAAGGTGATTTTCAAAATCTTCATAGTGTGGATTTTGATCAAGGACGATCAACATCATTTCCTTCTCAACCATTTACAGGCATGATTGAAGCTAGCAATCTGAAGATGGAGATGTAA

Protein sequence

>Msa0605670

MLHCLNTSGNLVGGTISDMTVLERQRARKKFQHEHENEHEQDQQHGRYFSGNGFSSSQQFLMVGCDSALGEVVANSMKPDPGFENVEETIKKRKADNKVDMKSKDKRIKVSVEEGESKITEQTKGQKNTKLKNRENCDDVGSKENSKGSEIQNQKPDYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKIAGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDFNIDELFAKEVFTQNFPMMQSEMSNPAYLQFNSTQQLVSCCGGLINNMGIVPPEIGVRRNINAPASASLPEIFLDSSCFTHILPSSTWEGDFQNLHSVDFDQGRSTSFPSQPFTGMIEASNLKMEM*