AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1337350


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1337350 MtrunA17_Chr4g0072601 94.796 269 9 1 1 264 21 289 0.0 528
Msa1337350 MtrunA17_Chr4g0072611 75.000 264 61 1 2 260 19 282 7.17e-154 430
Msa1337350 MtrunA17_Chr7g0258911 75.379 264 60 1 2 260 18 281 2.31e-148 416
Msa1337350 MtrunA17_Chr4g0072671 73.134 268 63 2 1 259 19 286 2.13e-143 403
Msa1337350 MtrunA17_Chr4g0071341 70.229 262 72 2 5 260 22 283 3.91e-134 380
Msa1337350 MtrunA17_Chr8g0377841 65.660 265 80 3 1 259 23 282 1.48e-127 363
Msa1337350 MtrunA17_Chr2g0299061 64.179 268 86 2 1 258 19 286 3.87e-127 362
Msa1337350 MtrunA17_Chr3g0122021 66.023 259 77 2 5 258 25 277 1.30e-123 353
Msa1337350 MtrunA17_Chr3g0122031 66.023 259 77 2 5 258 25 277 1.86e-123 353
Msa1337350 MtrunA17_Chr4g0072681 64.198 243 74 3 29 258 1 243 2.61e-112 323
Msa1337350 MtrunA17_Chr8g0389641 56.757 259 65 3 5 258 26 242 2.99e-103 300
Msa1337350 MtrunA17_Chr6g0486581 52.985 268 113 5 1 258 19 283 2.84e-95 281
Msa1337350 MtrunA17_Chr6g0461761 53.937 254 104 4 15 259 39 288 4.97e-91 271
Msa1337350 MtrunA17_Chr5g0443391 48.496 266 127 2 2 262 22 282 9.26e-91 270
Msa1337350 MtrunA17_Chr6g0461731 53.150 254 106 4 15 259 62 311 1.48e-90 270
Msa1337350 MtrunA17_Chr4g0054431 50.000 258 116 5 10 258 34 287 3.74e-90 268
Msa1337350 MtrunA17_Chr4g0054451 50.000 258 116 5 10 258 36 289 4.26e-90 268
Msa1337350 MtrunA17_Chr7g0252631 50.376 266 115 5 2 258 30 287 1.04e-87 262
Msa1337350 MtrunA17_Chr7g0252621 50.376 266 115 5 2 258 30 287 1.92e-87 261
Msa1337350 MtrunA17_Chr3g0096651 50.000 248 116 2 16 258 38 282 3.62e-87 261
Msa1337350 MtrunA17_Chr7g0252601 52.400 250 112 3 15 258 39 287 3.73e-87 261
Msa1337350 MtrunA17_Chr1g0206681 47.368 266 133 2 2 260 28 293 3.22e-86 259
Msa1337350 MtrunA17_Chr2g0323161 49.801 251 111 4 23 259 38 287 9.92e-86 257
Msa1337350 MtrunA17_Chr4g0023961 48.249 257 118 4 22 264 39 294 8.78e-84 252
Msa1337350 MtrunA17_Chr8g0390201 52.857 210 92 4 55 258 1 209 1.16e-76 231
Msa1337350 MtrunA17_Chr1g0206081 43.657 268 134 4 6 260 33 296 4.94e-76 233
Msa1337350 MtrunA17_Chr8g0340001 45.923 233 118 4 32 258 1 231 4.74e-64 200
Msa1337350 MtrunA17_Chr4g0072641 67.176 131 29 1 130 260 34 150 7.55e-61 189
Msa1337350 MtrunA17_Chr4g0028221 41.736 242 121 6 30 258 70 304 1.71e-57 186
Msa1337350 MtrunA17_Chr7g0264731 39.474 266 139 7 7 259 36 292 2.46e-56 182
Msa1337350 MtrunA17_Chr2g0327411 37.945 253 137 6 10 249 56 301 7.82e-55 179
Msa1337350 MtrunA17_Chr1g0180451 38.202 267 139 8 7 258 39 294 1.66e-54 177
Msa1337350 MtrunA17_Chr8g0375981 36.965 257 147 6 16 260 39 292 3.57e-53 175
Msa1337350 MtrunA17_Chr2g0303861 39.062 256 140 6 10 258 31 277 4.24e-52 171
Msa1337350 MtrunA17_Chr1g0161951 37.405 262 144 8 16 263 41 296 4.86e-50 167
Msa1337350 MtrunA17_Chr8g0365231 36.538 260 147 8 15 258 53 310 1.51e-49 165
Msa1337350 MtrunA17_Chr2g0303721 38.367 245 140 8 16 256 38 275 2.35e-49 164
Msa1337350 MtrunA17_Chr5g0410621 37.262 263 148 6 13 260 47 307 6.35e-48 162
Msa1337350 MtrunA17_Chr7g0235541 39.908 218 112 6 55 261 1 210 1.35e-44 149
Msa1337350 MtrunA17_Chr8g0382041 33.712 264 155 8 16 264 42 300 3.05e-41 144
Msa1337350 MtrunA17_Chr8g0374231 42.991 107 52 3 159 260 1 103 4.75e-24 93.2
Msa1337350 MtrunA17_Chr4g0072631 76.471 51 12 0 5 55 28 78 2.07e-21 86.3
Msa1337350 MtrunA17_Chr8g0350711 32.759 174 104 6 30 196 54 221 1.74e-13 68.2
Msa1337350 MtrunA17_Chr8g0390181 46.154 65 33 1 6 70 26 88 1.21e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1337350 AT4G25810.1 70.566 265 71 2 1 258 19 283 2.47e-142 401
Msa1337350 AT5G57560.1 68.561 264 75 2 3 258 18 281 9.62e-140 394
Msa1337350 AT5G57550.1 69.349 261 72 2 3 258 25 282 1.99e-137 389
Msa1337350 AT4G30270.1 66.920 263 68 2 5 262 21 269 1.98e-132 375
Msa1337350 AT2G18800.1 63.830 282 84 5 1 264 21 302 6.81e-130 370
Msa1337350 AT5G48070.1 64.259 263 84 3 3 259 24 282 7.61e-128 364
Msa1337350 AT5G57530.1 62.308 260 93 1 6 260 25 284 1.81e-122 350
Msa1337350 AT4G30280.1 64.151 265 85 3 1 259 22 282 2.79e-122 350
Msa1337350 AT3G23730.1 59.774 266 98 2 2 258 21 286 2.79e-121 348
Msa1337350 AT4G14130.1 61.069 262 96 2 3 258 23 284 2.27e-120 345
Msa1337350 AT5G57540.1 60.153 261 99 1 5 260 23 283 5.05e-120 344
Msa1337350 AT1G65310.1 63.118 263 87 3 3 259 24 282 1.87e-119 343
Msa1337350 AT1G65310.2 63.118 263 87 3 3 259 46 304 1.93e-119 343
Msa1337350 AT4G30290.1 62.642 265 89 3 1 259 17 277 7.21e-119 341
Msa1337350 AT4G25820.1 59.623 265 102 1 1 260 23 287 2.80e-116 335
Msa1337350 AT5G13870.2 52.964 253 106 4 15 258 39 287 3.05e-87 261
Msa1337350 AT5G13870.1 52.964 253 106 4 15 258 39 287 3.05e-87 261
Msa1337350 AT5G13870.3 52.964 253 106 4 15 258 39 287 3.05e-87 261
Msa1337350 AT5G65730.1 46.008 263 133 4 3 258 30 290 3.12e-87 261
Msa1337350 AT4G03210.1 52.263 243 107 3 24 258 43 284 4.13e-86 258
Msa1337350 AT4G37800.1 48.649 259 120 5 11 260 37 291 1.40e-85 257
Msa1337350 AT4G28850.1 48.062 258 122 4 14 261 35 290 3.41e-85 256
Msa1337350 AT2G06850.1 50.988 253 111 4 15 258 42 290 4.37e-83 251
Msa1337350 AT4G03210.2 51.899 237 102 4 30 258 24 256 1.52e-81 246
Msa1337350 AT2G14620.1 46.067 267 135 4 2 260 31 296 3.05e-79 241
Msa1337350 AT2G06850.2 52.174 230 97 4 38 258 5 230 1.24e-78 238
Msa1337350 AT1G11545.1 44.569 267 125 6 11 260 41 301 7.53e-77 235
Msa1337350 AT4G13090.1 46.245 253 126 4 14 258 38 288 7.47e-73 225
Msa1337350 AT2G14620.2 48.261 230 110 4 39 260 18 246 5.16e-72 221
Msa1337350 AT2G14620.3 48.661 224 106 4 45 260 13 235 2.73e-70 216
Msa1337350 AT3G25050.1 43.580 257 133 5 10 258 37 289 2.65e-69 216
Msa1337350 AT4G13080.1 44.800 250 130 4 14 258 45 291 3.57e-68 213
Msa1337350 AT2G36870.1 40.000 265 137 6 7 258 42 297 3.63e-57 185
Msa1337350 AT1G14720.1 37.743 257 145 7 16 260 39 292 5.87e-52 172
Msa1337350 AT3G44990.1 40.244 246 121 8 29 258 58 293 8.85e-52 171
Msa1337350 AT1G32170.1 36.604 265 151 7 10 260 34 295 3.98e-51 171
Msa1337350 AT2G01850.1 35.798 257 150 7 16 260 39 292 3.04e-48 163
Msa1337350 AT1G10550.1 35.249 261 145 7 19 258 52 309 5.04e-48 162
Msa1337350 AT3G48580.1 37.121 264 139 10 1 258 31 273 3.22e-43 148
Msa1337350 AT4G18990.1 33.213 277 159 7 10 262 42 316 1.18e-42 149
Msa1337350 AT4G18990.2 35.000 220 121 6 63 262 25 242 1.69e-38 136
Msa1337350 AT3G48580.3 37.445 227 120 8 38 258 4 214 1.51e-37 132
Msa1337350 AT2G36870.2 42.446 139 65 3 7 132 42 178 8.22e-27 103
Msa1337350 AT3G48580.2 31.818 264 133 11 1 258 31 253 8.62e-26 102

Find 64 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGAACAACAATTCTATTTA+TGG 0.140855 tig0001526:-63010 Msa1337350:CDS
AATCTCATTGGCTGCTTCTT+TGG 0.175421 tig0001526:+62196 None:intergenic
ATTGGCTGCTTCTTTGGATA+TGG 0.238008 tig0001526:+62202 None:intergenic
TGAAATAGACTTTGAATTCT+TGG 0.240382 tig0001526:-63096 Msa1337350:CDS
GACCCTGAGGGAATCGTTTA+AGG 0.250841 tig0001526:+61918 None:intergenic
TATTGATGGCAGACCAATTA+GGG 0.305687 tig0001526:-62254 Msa1337350:CDS
AAGTTCTTGAATTCCCTAAT+TGG 0.320227 tig0001526:+62241 None:intergenic
TTCCTAAAAGAAGCAGTAAA+TGG 0.325310 tig0001526:+62100 None:intergenic
CTATTGATGGCAGACCAATT+AGG 0.330217 tig0001526:-62255 Msa1337350:CDS
CAAATCAGAAAAGGCTCAAA+TGG 0.340400 tig0001526:-61979 Msa1337350:CDS
ATGCAAATTAAACTTGTTCC+TGG 0.361969 tig0001526:-63272 Msa1337350:CDS
GAAATAGACTTTGAATTCTT+GGG 0.378927 tig0001526:-63095 Msa1337350:CDS
GTTCTCTGTCCCCTTTGCCT+AGG 0.418397 tig0001526:+63027 None:intergenic
TTCTCTGTCCCCTTTGCCTA+GGG 0.435604 tig0001526:+63028 None:intergenic
GTCTGTGGAATGCTGATGAT+TGG 0.441709 tig0001526:-62165 Msa1337350:CDS
CTAGACAGAACCTCTGGCTC+TGG 0.460483 tig0001526:-63335 Msa1337350:CDS
ATGTGTACACCCTAGGCAAA+GGG 0.461356 tig0001526:-63037 Msa1337350:CDS
TAGGTATGAAAATCTGTAGT+TGG 0.461780 tig0001526:+62981 None:intergenic
ACTCTTCTTCTGACAATGCT+TGG 0.466490 tig0001526:-62024 Msa1337350:CDS
AATTAGGGAATTCAAGAACT+TGG 0.476768 tig0001526:-62239 Msa1337350:CDS
GAAACTTACACAACATGTGC+AGG 0.480987 tig0001526:+62942 None:intergenic
AGACTTGAATATAATCTCAT+TGG 0.482257 tig0001526:+62184 None:intergenic
ATTGGACAAAACACAACCAT+TGG 0.488431 tig0001526:+62069 None:intergenic
TCCTCTTAATTCTCACGACT+TGG 0.495662 tig0001526:+61871 None:intergenic
CTTGTTCCTGGAAATTCAGC+TGG 0.496538 tig0001526:-63260 Msa1337350:CDS
ATCAAGATGTTAGTATCACT+TGG 0.496547 tig0001526:-63409 Msa1337350:CDS
TAGATTCTACAAATCAGAAA+AGG 0.498615 tig0001526:-61988 Msa1337350:CDS
TGACCTTAAACGATTCCCTC+AGG 0.499561 tig0001526:-61921 Msa1337350:CDS
ACATTGGTATGAACTATGTA+AGG 0.504779 tig0001526:+63056 None:intergenic
TTTGCAAGAAGAAATTCCAT+TGG 0.505338 tig0001526:+62051 None:intergenic
ACCGTGCCAGCTGAATTTCC+AGG 0.514387 tig0001526:+63254 None:intergenic
TTTAGGAACTTCAAAGCCAA+TGG 0.515491 tig0001526:-62085 Msa1337350:CDS
TTAATTCTCACGACTTGGTA+CGG 0.522495 tig0001526:+61876 None:intergenic
AGGATTCCAGAGAAAAGAAT+AGG 0.527569 tig0001526:+62962 None:intergenic
TCAAGATGTTAGTATCACTT+GGG 0.531310 tig0001526:-63408 Msa1337350:CDS
ACGTTCAGAAGGGTCATTGT+GGG 0.534482 tig0001526:-63120 Msa1337350:CDS
AAATCAGAAAAGGCTCAAAT+GGG 0.537276 tig0001526:-61978 Msa1337350:CDS
AGCATTGTCAGAAGAAGAGT+TGG 0.537340 tig0001526:+62027 None:intergenic
TCTGTGGAATGCTGATGATT+GGG 0.547719 tig0001526:-62164 Msa1337350:CDS
TCCTGGAAATTCAGCTGGCA+CGG 0.548180 tig0001526:-63255 Msa1337350:intron
CTGTCTCTAGACAGAACCTC+TGG 0.548223 tig0001526:-63341 Msa1337350:CDS
GCATTGCAGTTACGTTCAGA+AGG 0.549452 tig0001526:-63131 Msa1337350:intron
TTTGCCTAGGGTGTACACAT+TGG 0.559431 tig0001526:+63040 None:intergenic
GTGGACTTGTGAAAACAGAT+TGG 0.561998 tig0001526:-62132 Msa1337350:CDS
AATGTGTACACCCTAGGCAA+AGG 0.565362 tig0001526:-63038 Msa1337350:CDS
TGAGATTATATTCAAGTCTG+TGG 0.566225 tig0001526:-62180 Msa1337350:CDS
CATACCAATGTGTACACCCT+AGG 0.600781 tig0001526:-63044 Msa1337350:CDS
GACCTTAAACGATTCCCTCA+GGG 0.603618 tig0001526:-61920 Msa1337350:CDS
GATGATTGGGCAACAAGAGG+TGG 0.606066 tig0001526:-62151 Msa1337350:CDS
TTCAAGAACTTGGAGAGTGA+AGG 0.610761 tig0001526:-62229 Msa1337350:CDS
CAAGATGTTAGTATCACTTG+GGG 0.610855 tig0001526:-63407 Msa1337350:CDS
TACGGACAGTGCACTCTAGA+GGG 0.615717 tig0001526:+61894 None:intergenic
GTACGGACAGTGCACTCTAG+AGG 0.618379 tig0001526:+61893 None:intergenic
CACTCTAGAGGGAGACCCTG+AGG 0.622585 tig0001526:+61905 None:intergenic
GAATTCTTGGGAAATTTGAG+TGG 0.630242 tig0001526:-63083 Msa1337350:CDS
CATTGCAGTTACGTTCAGAA+GGG 0.632405 tig0001526:-63130 Msa1337350:intron
TACGTTCAGAAGGGTCATTG+TGG 0.637977 tig0001526:-63121 Msa1337350:CDS
GGATTGAAAGCCAGAGCCAG+AGG 0.638116 tig0001526:+63325 None:intergenic
AGATGTTAGTATCACTTGGG+GGG 0.655003 tig0001526:-63405 Msa1337350:CDS
ACTCTAGAGGGAGACCCTGA+GGG 0.655142 tig0001526:+61906 None:intergenic
AGAGGTAAGATTGTGAACAA+TGG 0.680526 tig0001526:-63377 Msa1337350:CDS
GCTGATGATTGGGCAACAAG+AGG 0.682230 tig0001526:-62154 Msa1337350:CDS
TGTGTACACCCTAGGCAAAG+GGG 0.687067 tig0001526:-63036 Msa1337350:CDS
AAGATGTTAGTATCACTTGG+GGG 0.699999 tig0001526:-63406 Msa1337350:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACATTAAACATATTAATA+AGG + tig0001526:62122-62141 None:intergenic 10.0%
!!! AATATGTTTAATGTTTTTTA+TGG - tig0001526:62126-62145 Msa1337350:CDS 10.0%
!!! TTAAATTTTTGAAAATATGT+AGG - tig0001526:62610-62629 Msa1337350:intron 10.0%
!!! TAAATTTTTGAAAATATGTA+GGG - tig0001526:62611-62630 Msa1337350:intron 10.0%
!!! ATTTTAAAAAATTTAAGGAT+TGG + tig0001526:62638-62657 None:intergenic 10.0%
!! ATTAAGATTTATCAAAATTA+AGG + tig0001526:62675-62694 None:intergenic 10.0%
!! TAAATAAATATAGATAACTA+TGG - tig0001526:62700-62719 Msa1337350:intron 10.0%
!! AAACATTAAACATATTAATA+AGG + tig0001526:62122-62141 None:intergenic 10.0%
!!! AATATGTTTAATGTTTTTTA+TGG - tig0001526:62126-62145 Msa1337350:CDS 10.0%
!!! TTAAATTTTTGAAAATATGT+AGG - tig0001526:62610-62629 Msa1337350:intron 10.0%
!!! TAAATTTTTGAAAATATGTA+GGG - tig0001526:62611-62630 Msa1337350:intron 10.0%
!!! ATTTTAAAAAATTTAAGGAT+TGG + tig0001526:62638-62657 None:intergenic 10.0%
!! ATTAAGATTTATCAAAATTA+AGG + tig0001526:62675-62694 None:intergenic 10.0%
!! TAAATAAATATAGATAACTA+TGG - tig0001526:62700-62719 Msa1337350:intron 10.0%
!!! TTATTTTCAAATTCTTTGTT+TGG - tig0001526:62413-62432 Msa1337350:intron 15.0%
!! ATTTAAATATAATAAGAGAG+TGG - tig0001526:62522-62541 Msa1337350:intron 15.0%
!!! ATTTCAAATTTTCAAAGATT+TGG - tig0001526:62550-62569 Msa1337350:intron 15.0%
!!! TTTCAAATTTTCAAAGATTT+GGG - tig0001526:62551-62570 Msa1337350:intron 15.0%
!!! TAAGAATTGTAATTTTTTTG+TGG - tig0001526:62893-62912 Msa1337350:intron 15.0%
!!! GATCATGTAAATTTTTATTT+TGG + tig0001526:62986-63005 None:intergenic 15.0%
!!! TTATTTTCAAATTCTTTGTT+TGG - tig0001526:62413-62432 Msa1337350:intron 15.0%
!! ATTTAAATATAATAAGAGAG+TGG - tig0001526:62522-62541 Msa1337350:intron 15.0%
!!! ATTTCAAATTTTCAAAGATT+TGG - tig0001526:62550-62569 Msa1337350:intron 15.0%
!!! TTTCAAATTTTCAAAGATTT+GGG - tig0001526:62551-62570 Msa1337350:intron 15.0%
!!! TAAGAATTGTAATTTTTTTG+TGG - tig0001526:62893-62912 Msa1337350:intron 15.0%
!!! GATCATGTAAATTTTTATTT+TGG + tig0001526:62986-63005 None:intergenic 15.0%
!!! TCCAATAATCAATATCTTTT+TGG - tig0001526:62012-62031 Msa1337350:CDS 20.0%
!!! TCCAAAAAGATATTGATTAT+TGG + tig0001526:62016-62035 None:intergenic 20.0%
!! GATTTATCAAAATTAAGGAT+TGG + tig0001526:62670-62689 None:intergenic 20.0%
!! AACAAATTATATGTACCAAT+TGG - tig0001526:62867-62886 Msa1337350:intron 20.0%
!!! TCCAATAATCAATATCTTTT+TGG - tig0001526:62012-62031 Msa1337350:CDS 20.0%
!!! TCCAAAAAGATATTGATTAT+TGG + tig0001526:62016-62035 None:intergenic 20.0%
!! GATTTATCAAAATTAAGGAT+TGG + tig0001526:62670-62689 None:intergenic 20.0%
!! AACAAATTATATGTACCAAT+TGG - tig0001526:62867-62886 Msa1337350:intron 20.0%
! TGAAATAGACTTTGAATTCT+TGG - tig0001526:62221-62240 Msa1337350:CDS 25.0%
! GAAATAGACTTTGAATTCTT+GGG - tig0001526:62222-62241 Msa1337350:CDS 25.0%
! GAGAACAACAATTCTATTTA+TGG - tig0001526:62307-62326 Msa1337350:intron 25.0%
!! TGGGCAAATTTCAAATTTTA+AGG - tig0001526:62570-62589 Msa1337350:intron 25.0%
!!! TTCAAATTTTAAGGAAGTTG+AGG - tig0001526:62579-62598 Msa1337350:intron 25.0%
!!! TCAAATTTTAAGGAAGTTGA+GGG - tig0001526:62580-62599 Msa1337350:intron 25.0%
!!! TTGTGTACACAGTATTTTTT+TGG - tig0001526:62748-62767 Msa1337350:intron 25.0%
! GACAATGCATAATATATACA+AGG + tig0001526:62799-62818 None:intergenic 25.0%
! TTACAATTCTTATGTCCAAT+TGG + tig0001526:62885-62904 None:intergenic 25.0%
!! GTTTTCAGATTTTCTATTGA+TGG - tig0001526:63049-63068 Msa1337350:CDS 25.0%
! AGACTTGAATATAATCTCAT+TGG + tig0001526:63136-63155 None:intergenic 25.0%
! TAGATTCTACAAATCAGAAA+AGG - tig0001526:63329-63348 Msa1337350:CDS 25.0%
! TGAAATAGACTTTGAATTCT+TGG - tig0001526:62221-62240 Msa1337350:CDS 25.0%
! GAAATAGACTTTGAATTCTT+GGG - tig0001526:62222-62241 Msa1337350:CDS 25.0%
! GAGAACAACAATTCTATTTA+TGG - tig0001526:62307-62326 Msa1337350:intron 25.0%
!! TGGGCAAATTTCAAATTTTA+AGG - tig0001526:62570-62589 Msa1337350:intron 25.0%
!!! TTCAAATTTTAAGGAAGTTG+AGG - tig0001526:62579-62598 Msa1337350:intron 25.0%
!!! TCAAATTTTAAGGAAGTTGA+GGG - tig0001526:62580-62599 Msa1337350:intron 25.0%
!!! TTGTGTACACAGTATTTTTT+TGG - tig0001526:62748-62767 Msa1337350:intron 25.0%
! GACAATGCATAATATATACA+AGG + tig0001526:62799-62818 None:intergenic 25.0%
! TTACAATTCTTATGTCCAAT+TGG + tig0001526:62885-62904 None:intergenic 25.0%
!! GTTTTCAGATTTTCTATTGA+TGG - tig0001526:63049-63068 Msa1337350:CDS 25.0%
! AGACTTGAATATAATCTCAT+TGG + tig0001526:63136-63155 None:intergenic 25.0%
! TAGATTCTACAAATCAGAAA+AGG - tig0001526:63329-63348 Msa1337350:CDS 25.0%
ATCAAGATGTTAGTATCACT+TGG - tig0001526:61908-61927 Msa1337350:CDS 30.0%
TCAAGATGTTAGTATCACTT+GGG - tig0001526:61909-61928 Msa1337350:CDS 30.0%
! ATGCAAATTAAACTTGTTCC+TGG - tig0001526:62045-62064 Msa1337350:CDS 30.0%
ACATTGGTATGAACTATGTA+AGG + tig0001526:62264-62283 None:intergenic 30.0%
TAGGTATGAAAATCTGTAGT+TGG + tig0001526:62339-62358 None:intergenic 30.0%
! TTCATACCTATTCTTTTCTC+TGG - tig0001526:62349-62368 Msa1337350:intron 30.0%
!!! TGTACACAGTATTTTTTTGG+TGG - tig0001526:62751-62770 Msa1337350:intron 30.0%
CATAATATATACAAGGTCTG+AGG + tig0001526:62792-62811 None:intergenic 30.0%
! TGACTTATGTGATTTGTCTT+TGG - tig0001526:63027-63046 Msa1337350:CDS 30.0%
AAGTTCTTGAATTCCCTAAT+TGG + tig0001526:63079-63098 None:intergenic 30.0%
AATTAGGGAATTCAAGAACT+TGG - tig0001526:63078-63097 Msa1337350:CDS 30.0%
TGAGATTATATTCAAGTCTG+TGG - tig0001526:63137-63156 Msa1337350:intron 30.0%
TTCCTAAAAGAAGCAGTAAA+TGG + tig0001526:63220-63239 None:intergenic 30.0%
TTTGCAAGAAGAAATTCCAT+TGG + tig0001526:63269-63288 None:intergenic 30.0%
AAATCAGAAAAGGCTCAAAT+GGG - tig0001526:63339-63358 Msa1337350:CDS 30.0%
ATCAAGATGTTAGTATCACT+TGG - tig0001526:61908-61927 Msa1337350:CDS 30.0%
TCAAGATGTTAGTATCACTT+GGG - tig0001526:61909-61928 Msa1337350:CDS 30.0%
! ATGCAAATTAAACTTGTTCC+TGG - tig0001526:62045-62064 Msa1337350:CDS 30.0%
ACATTGGTATGAACTATGTA+AGG + tig0001526:62264-62283 None:intergenic 30.0%
TAGGTATGAAAATCTGTAGT+TGG + tig0001526:62339-62358 None:intergenic 30.0%
! TTCATACCTATTCTTTTCTC+TGG - tig0001526:62349-62368 Msa1337350:intron 30.0%
!!! TGTACACAGTATTTTTTTGG+TGG - tig0001526:62751-62770 Msa1337350:intron 30.0%
CATAATATATACAAGGTCTG+AGG + tig0001526:62792-62811 None:intergenic 30.0%
! TGACTTATGTGATTTGTCTT+TGG - tig0001526:63027-63046 Msa1337350:CDS 30.0%
AAGTTCTTGAATTCCCTAAT+TGG + tig0001526:63079-63098 None:intergenic 30.0%
AATTAGGGAATTCAAGAACT+TGG - tig0001526:63078-63097 Msa1337350:CDS 30.0%
TGAGATTATATTCAAGTCTG+TGG - tig0001526:63137-63156 Msa1337350:intron 30.0%
TTCCTAAAAGAAGCAGTAAA+TGG + tig0001526:63220-63239 None:intergenic 30.0%
TTTGCAAGAAGAAATTCCAT+TGG + tig0001526:63269-63288 None:intergenic 30.0%
AAATCAGAAAAGGCTCAAAT+GGG - tig0001526:63339-63358 Msa1337350:CDS 30.0%
CAAGATGTTAGTATCACTTG+GGG - tig0001526:61910-61929 Msa1337350:CDS 35.0%
AAGATGTTAGTATCACTTGG+GGG - tig0001526:61911-61930 Msa1337350:CDS 35.0%
AGAGGTAAGATTGTGAACAA+TGG - tig0001526:61940-61959 Msa1337350:CDS 35.0%
GAATTCTTGGGAAATTTGAG+TGG - tig0001526:62234-62253 Msa1337350:CDS 35.0%
AGGATTCCAGAGAAAAGAAT+AGG + tig0001526:62358-62377 None:intergenic 35.0%
! ATGGAGAGTTTGAAACACAT+AGG - tig0001526:62719-62738 Msa1337350:intron 35.0%
!!! ACACAGTATTTTTTTGGTGG+TGG - tig0001526:62754-62773 Msa1337350:intron 35.0%
!! CATAAGTCAAGTTGATCAAG+AGG + tig0001526:63016-63035 None:intergenic 35.0%
! TATTGATGGCAGACCAATTA+GGG - tig0001526:63063-63082 Msa1337350:CDS 35.0%
! CTCCATTTACTGCTTCTTTT+AGG - tig0001526:63215-63234 Msa1337350:intron 35.0%
TTTAGGAACTTCAAAGCCAA+TGG - tig0001526:63232-63251 Msa1337350:intron 35.0%
ATTGGACAAAACACAACCAT+TGG + tig0001526:63251-63270 None:intergenic 35.0%
! AATGGTTGTGTTTTGTCCAA+TGG - tig0001526:63250-63269 Msa1337350:intron 35.0%
CAAATCAGAAAAGGCTCAAA+TGG - tig0001526:63338-63357 Msa1337350:CDS 35.0%
CAAGATGTTAGTATCACTTG+GGG - tig0001526:61910-61929 Msa1337350:CDS 35.0%
AAGATGTTAGTATCACTTGG+GGG - tig0001526:61911-61930 Msa1337350:CDS 35.0%
AGAGGTAAGATTGTGAACAA+TGG - tig0001526:61940-61959 Msa1337350:CDS 35.0%
GAATTCTTGGGAAATTTGAG+TGG - tig0001526:62234-62253 Msa1337350:CDS 35.0%
AGGATTCCAGAGAAAAGAAT+AGG + tig0001526:62358-62377 None:intergenic 35.0%
! ATGGAGAGTTTGAAACACAT+AGG - tig0001526:62719-62738 Msa1337350:intron 35.0%
!!! ACACAGTATTTTTTTGGTGG+TGG - tig0001526:62754-62773 Msa1337350:intron 35.0%
!! CATAAGTCAAGTTGATCAAG+AGG + tig0001526:63016-63035 None:intergenic 35.0%
! TATTGATGGCAGACCAATTA+GGG - tig0001526:63063-63082 Msa1337350:CDS 35.0%
! CTCCATTTACTGCTTCTTTT+AGG - tig0001526:63215-63234 Msa1337350:intron 35.0%
TTTAGGAACTTCAAAGCCAA+TGG - tig0001526:63232-63251 Msa1337350:intron 35.0%
ATTGGACAAAACACAACCAT+TGG + tig0001526:63251-63270 None:intergenic 35.0%
! AATGGTTGTGTTTTGTCCAA+TGG - tig0001526:63250-63269 Msa1337350:intron 35.0%
CAAATCAGAAAAGGCTCAAA+TGG - tig0001526:63338-63357 Msa1337350:CDS 35.0%
AGATGTTAGTATCACTTGGG+GGG - tig0001526:61912-61931 Msa1337350:CDS 40.0%
CATTGCAGTTACGTTCAGAA+GGG - tig0001526:62187-62206 Msa1337350:CDS 40.0%
GAAACTTACACAACATGTGC+AGG + tig0001526:62378-62397 None:intergenic 40.0%
!!! AGTATTTTTTTGGTGGTGGC+AGG - tig0001526:62758-62777 Msa1337350:intron 40.0%
TGTCGATATCAACTGAGCTA+AGG - tig0001526:62815-62834 Msa1337350:intron 40.0%
TATCAACTGAGCTAAGGTCA+CGG - tig0001526:62821-62840 Msa1337350:intron 40.0%
! CTATTGATGGCAGACCAATT+AGG - tig0001526:63062-63081 Msa1337350:CDS 40.0%
TTCAAGAACTTGGAGAGTGA+AGG - tig0001526:63088-63107 Msa1337350:CDS 40.0%
ATTGGCTGCTTCTTTGGATA+TGG + tig0001526:63118-63137 None:intergenic 40.0%
! AATCTCATTGGCTGCTTCTT+TGG + tig0001526:63124-63143 None:intergenic 40.0%
TCTGTGGAATGCTGATGATT+GGG - tig0001526:63153-63172 Msa1337350:intron 40.0%
GTGGACTTGTGAAAACAGAT+TGG - tig0001526:63185-63204 Msa1337350:intron 40.0%
AGCATTGTCAGAAGAAGAGT+TGG + tig0001526:63293-63312 None:intergenic 40.0%
ACTCTTCTTCTGACAATGCT+TGG - tig0001526:63293-63312 Msa1337350:CDS 40.0%
AGATGTTAGTATCACTTGGG+GGG - tig0001526:61912-61931 Msa1337350:CDS 40.0%
CATTGCAGTTACGTTCAGAA+GGG - tig0001526:62187-62206 Msa1337350:CDS 40.0%
GAAACTTACACAACATGTGC+AGG + tig0001526:62378-62397 None:intergenic 40.0%
!!! AGTATTTTTTTGGTGGTGGC+AGG - tig0001526:62758-62777 Msa1337350:intron 40.0%
TGTCGATATCAACTGAGCTA+AGG - tig0001526:62815-62834 Msa1337350:intron 40.0%
TATCAACTGAGCTAAGGTCA+CGG - tig0001526:62821-62840 Msa1337350:intron 40.0%
! CTATTGATGGCAGACCAATT+AGG - tig0001526:63062-63081 Msa1337350:CDS 40.0%
TTCAAGAACTTGGAGAGTGA+AGG - tig0001526:63088-63107 Msa1337350:CDS 40.0%
ATTGGCTGCTTCTTTGGATA+TGG + tig0001526:63118-63137 None:intergenic 40.0%
! AATCTCATTGGCTGCTTCTT+TGG + tig0001526:63124-63143 None:intergenic 40.0%
TCTGTGGAATGCTGATGATT+GGG - tig0001526:63153-63172 Msa1337350:intron 40.0%
GTGGACTTGTGAAAACAGAT+TGG - tig0001526:63185-63204 Msa1337350:intron 40.0%
AGCATTGTCAGAAGAAGAGT+TGG + tig0001526:63293-63312 None:intergenic 40.0%
ACTCTTCTTCTGACAATGCT+TGG - tig0001526:63293-63312 Msa1337350:CDS 40.0%
TTAGTATCACTTGGGGGGAT+GGG - tig0001526:61917-61936 Msa1337350:CDS 45.0%
CTTGTTCCTGGAAATTCAGC+TGG - tig0001526:62057-62076 Msa1337350:CDS 45.0%
GCATTGCAGTTACGTTCAGA+AGG - tig0001526:62186-62205 Msa1337350:CDS 45.0%
TACGTTCAGAAGGGTCATTG+TGG - tig0001526:62196-62215 Msa1337350:CDS 45.0%
ACGTTCAGAAGGGTCATTGT+GGG - tig0001526:62197-62216 Msa1337350:CDS 45.0%
CATACCAATGTGTACACCCT+AGG - tig0001526:62273-62292 Msa1337350:intron 45.0%
TTTGCCTAGGGTGTACACAT+TGG + tig0001526:62280-62299 None:intergenic 45.0%
AATGTGTACACCCTAGGCAA+AGG - tig0001526:62279-62298 Msa1337350:intron 45.0%
ATGTGTACACCCTAGGCAAA+GGG - tig0001526:62280-62299 Msa1337350:intron 45.0%
GTCTGTGGAATGCTGATGAT+TGG - tig0001526:63152-63171 Msa1337350:intron 45.0%
TGACCTTAAACGATTCCCTC+AGG - tig0001526:63396-63415 Msa1337350:CDS 45.0%
GACCTTAAACGATTCCCTCA+GGG - tig0001526:63397-63416 Msa1337350:CDS 45.0%
TTAGTATCACTTGGGGGGAT+GGG - tig0001526:61917-61936 Msa1337350:CDS 45.0%
CTTGTTCCTGGAAATTCAGC+TGG - tig0001526:62057-62076 Msa1337350:CDS 45.0%
GCATTGCAGTTACGTTCAGA+AGG - tig0001526:62186-62205 Msa1337350:CDS 45.0%
TACGTTCAGAAGGGTCATTG+TGG - tig0001526:62196-62215 Msa1337350:CDS 45.0%
ACGTTCAGAAGGGTCATTGT+GGG - tig0001526:62197-62216 Msa1337350:CDS 45.0%
CATACCAATGTGTACACCCT+AGG - tig0001526:62273-62292 Msa1337350:intron 45.0%
TTTGCCTAGGGTGTACACAT+TGG + tig0001526:62280-62299 None:intergenic 45.0%
AATGTGTACACCCTAGGCAA+AGG - tig0001526:62279-62298 Msa1337350:intron 45.0%
ATGTGTACACCCTAGGCAAA+GGG - tig0001526:62280-62299 Msa1337350:intron 45.0%
GTCTGTGGAATGCTGATGAT+TGG - tig0001526:63152-63171 Msa1337350:intron 45.0%
TGACCTTAAACGATTCCCTC+AGG - tig0001526:63396-63415 Msa1337350:CDS 45.0%
GACCTTAAACGATTCCCTCA+GGG - tig0001526:63397-63416 Msa1337350:CDS 45.0%
!!! ATTTTTGAAATTTATAAAAA+TGG + tig0001526:62490-62509 None:intergenic 5.0%
!!! TATTTTCAAAAATTTAAAAT+TGG + tig0001526:62607-62626 None:intergenic 5.0%
!!! TACATATTTTAAAAAATTTA+AGG + tig0001526:62643-62662 None:intergenic 5.0%
!!! TTAAATTTTTTAAAATATGT+AGG - tig0001526:62642-62661 Msa1337350:intron 5.0%
!!! TAAATTTTTTAAAATATGTA+GGG - tig0001526:62643-62662 Msa1337350:intron 5.0%
!!! ATTTTTGAAATTTATAAAAA+TGG + tig0001526:62490-62509 None:intergenic 5.0%
!!! TATTTTCAAAAATTTAAAAT+TGG + tig0001526:62607-62626 None:intergenic 5.0%
!!! TACATATTTTAAAAAATTTA+AGG + tig0001526:62643-62662 None:intergenic 5.0%
!!! TTAAATTTTTTAAAATATGT+AGG - tig0001526:62642-62661 Msa1337350:intron 5.0%
!!! TAAATTTTTTAAAATATGTA+GGG - tig0001526:62643-62662 Msa1337350:intron 5.0%
GTTAGTATCACTTGGGGGGA+TGG - tig0001526:61916-61935 Msa1337350:CDS 50.0%
CTGTCTCTAGACAGAACCTC+TGG - tig0001526:61976-61995 Msa1337350:CDS 50.0%
TCCTGGAAATTCAGCTGGCA+CGG - tig0001526:62062-62081 Msa1337350:CDS 50.0%
TGTGTACACCCTAGGCAAAG+GGG - tig0001526:62281-62300 Msa1337350:intron 50.0%
TTCTCTGTCCCCTTTGCCTA+GGG + tig0001526:62292-62311 None:intergenic 50.0%
GCTGATGATTGGGCAACAAG+AGG - tig0001526:63163-63182 Msa1337350:intron 50.0%
GATGATTGGGCAACAAGAGG+TGG - tig0001526:63166-63185 Msa1337350:intron 50.0%
GACCCTGAGGGAATCGTTTA+AGG + tig0001526:63402-63421 None:intergenic 50.0%
TACGGACAGTGCACTCTAGA+GGG + tig0001526:63426-63445 None:intergenic 50.0%
GTTAGTATCACTTGGGGGGA+TGG - tig0001526:61916-61935 Msa1337350:CDS 50.0%
CTGTCTCTAGACAGAACCTC+TGG - tig0001526:61976-61995 Msa1337350:CDS 50.0%
TCCTGGAAATTCAGCTGGCA+CGG - tig0001526:62062-62081 Msa1337350:CDS 50.0%
TGTGTACACCCTAGGCAAAG+GGG - tig0001526:62281-62300 Msa1337350:intron 50.0%
TTCTCTGTCCCCTTTGCCTA+GGG + tig0001526:62292-62311 None:intergenic 50.0%
GCTGATGATTGGGCAACAAG+AGG - tig0001526:63163-63182 Msa1337350:intron 50.0%
GATGATTGGGCAACAAGAGG+TGG - tig0001526:63166-63185 Msa1337350:intron 50.0%
GACCCTGAGGGAATCGTTTA+AGG + tig0001526:63402-63421 None:intergenic 50.0%
TACGGACAGTGCACTCTAGA+GGG + tig0001526:63426-63445 None:intergenic 50.0%
! CTAGACAGAACCTCTGGCTC+TGG - tig0001526:61982-62001 Msa1337350:CDS 55.0%
GGATTGAAAGCCAGAGCCAG+AGG + tig0001526:61995-62014 None:intergenic 55.0%
ACCGTGCCAGCTGAATTTCC+AGG + tig0001526:62066-62085 None:intergenic 55.0%
GTTCTCTGTCCCCTTTGCCT+AGG + tig0001526:62293-62312 None:intergenic 55.0%
! ACTCTAGAGGGAGACCCTGA+GGG + tig0001526:63414-63433 None:intergenic 55.0%
GTACGGACAGTGCACTCTAG+AGG + tig0001526:63427-63446 None:intergenic 55.0%
! CTAGACAGAACCTCTGGCTC+TGG - tig0001526:61982-62001 Msa1337350:CDS 55.0%
GGATTGAAAGCCAGAGCCAG+AGG + tig0001526:61995-62014 None:intergenic 55.0%
ACCGTGCCAGCTGAATTTCC+AGG + tig0001526:62066-62085 None:intergenic 55.0%
GTTCTCTGTCCCCTTTGCCT+AGG + tig0001526:62293-62312 None:intergenic 55.0%
! ACTCTAGAGGGAGACCCTGA+GGG + tig0001526:63414-63433 None:intergenic 55.0%
GTACGGACAGTGCACTCTAG+AGG + tig0001526:63427-63446 None:intergenic 55.0%
ATCACTTGGGGGGATGGGAG+AGG - tig0001526:61922-61941 Msa1337350:CDS 60.0%
! CACTCTAGAGGGAGACCCTG+AGG + tig0001526:63415-63434 None:intergenic 60.0%
ATCACTTGGGGGGATGGGAG+AGG - tig0001526:61922-61941 Msa1337350:CDS 60.0%
! CACTCTAGAGGGAGACCCTG+AGG + tig0001526:63415-63434 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0001526 gene 61883 63456 61883 ID=Msa1337350;Name=Msa1337350
tig0001526 mRNA 61883 63456 61883 ID=Msa1337350-mRNA-1;Parent=Msa1337350;Name=Msa1337350-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|1|1|1|3|0|264
tig0001526 exon 63256 63456 63256 ID=Msa1337350-mRNA-1:exon:1113;Parent=Msa1337350-mRNA-1
tig0001526 exon 62951 63144 62951 ID=Msa1337350-mRNA-1:exon:1112;Parent=Msa1337350-mRNA-1
tig0001526 exon 61883 62282 61883 ID=Msa1337350-mRNA-1:exon:1111;Parent=Msa1337350-mRNA-1
tig0001526 CDS 63256 63456 63256 ID=Msa1337350-mRNA-1:cds;Parent=Msa1337350-mRNA-1
tig0001526 CDS 62951 63144 62951 ID=Msa1337350-mRNA-1:cds;Parent=Msa1337350-mRNA-1
tig0001526 CDS 61883 62282 61883 ID=Msa1337350-mRNA-1:cds;Parent=Msa1337350-mRNA-1
Gene Sequence

>Msa1337350

ATGGTAGCTTTTGCTGGAAACTTGTATCAAGATGTTAGTATCACTTGGGGGGATGGGAGAGGTAAGATTGTGAACAATGGTCAGCTTCTAACTCTGTCTCTAGACAGAACCTCTGGCTCTGGCTTTCAATCCAATAATCAATATCTTTTTGGAAAGATTGACATGCAAATTAAACTTGTTCCTGGAAATTCAGCTGGCACGTTACGTTCAGAAGGGTCATTGTGGGATGAAATAGACTTTGAATTCTTGGGAAATTTGAGTGGTGATCCTTACATAGTTCATACCAATGTGTACACCCTAGGCAAAGGGGACAGAGAACAACAATTCTATTTATGGTTTGATCCAACTACAGATTTTCATACCTATTCTTTTCTCTGGAATCCTGCACATGTTGTATTTTCTATTGATGGCAGACCAATTAGGGAATTCAAGAACTTGGAGAGTGAAGGTGTTCCATATCCAAAGAAGCAGCCAATGAGATTATATTCAAGTCTGTGGAATGCTGATGATTGGGCAACAAGAGGTGGACTTGTGAAAACAGATTGGAGTCAAGCTCCATTTACTGCTTCTTTTAGGAACTTCAAAGCCAATGGTTGTGTTTTGTCCAATGGAATTTCTTCTTGCAAAACCAACTCTTCTTCTGACAATGCTTGGTTGTATCAACAGCTAGATTCTACAAATCAGAAAAGGCTCAAATGGGTGCAGAAGAATTACATGATTTACAACTACTGCAATGACCTTAAACGATTCCCTCAGGGTCTCCCTCTAGAGTGCACTGTCCGTACCAAGTCGTGA

Protein sequence

>Msa1337350

MVAFAGNLYQDVSITWGDGRGKIVNNGQLLTLSLDRTSGSGFQSNNQYLFGKIDMQIKLVPGNSAGTLRSEGSLWDEIDFEFLGNLSGDPYIVHTNVYTLGKGDREQQFYLWFDPTTDFHTYSFLWNPAHVVFSIDGRPIREFKNLESEGVPYPKKQPMRLYSSLWNADDWATRGGLVKTDWSQAPFTASFRNFKANGCVLSNGISSCKTNSSSDNAWLYQQLDSTNQKRLKWVQKNYMIYNYCNDLKRFPQGLPLECTVRTKS*