AlfalfaGEDB | Msa1395660

M. sativa cultivar zhongmu-4 / Msa1395660

KEGG: K03094
GO: GO:0000018 GO:0000226 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005819 GO:0005829 GO:0005856 GO:0005886 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0009524 GO:0009892 GO:0009987 GO:0010035 GO:0010038 GO:0010605 GO:0015630 GO:0016020 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045910 GO:0045934 GO:0046686 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0060255 GO:0065007 GO:0071840 GO:0071944 GO:0080090
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1395660	XP_013454886.1	56.643	143	32	3	1	113	78	220	5.82e-32	122

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1395660	sp\|O49484\|ASK11_ARATH	35.659	129	35	2	2	113	55	152	2.63e-16	72.8

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1395660	A0A072UGR2	56.643	143	32	3	1	113	78	220	2.78e-32	122

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0006070	Msa1395660	0.800162	1.640159e-48	-8.615850e-47
Msa0012060	Msa1395660	0.818455	1.942427e-52	-8.615850e-47
Msa0017510	Msa1395660	0.820323	7.288098e-53	-8.615850e-47
Msa0037700	Msa1395660	0.806958	6.387490e-50	-8.615850e-47
Msa0068680	Msa1395660	0.818768	1.650139e-52	-8.615850e-47
Msa0086650	Msa1395660	0.810322	1.221212e-50	-8.615850e-47
Msa0092990	Msa1395660	0.814696	1.350804e-51	-8.615850e-47
Msa0096450	Msa1395660	0.807445	5.036584e-50	-8.615850e-47
Msa0101700	Msa1395660	0.805702	1.175288e-49	-8.615850e-47
Msa0114060	Msa1395660	0.804922	1.711459e-49	-8.615850e-47
Msa1348950	Msa1395660	0.800815	1.207158e-48	-8.615850e-47
Msa1362880	Msa1395660	0.800802	1.214943e-48	-8.615850e-47
Msa1369530	Msa1395660	0.815917	7.231098e-52	-8.615850e-47
Msa1384350	Msa1395660	0.808658	2.778943e-50	-8.615850e-47
Msa1392260	Msa1395660	0.808934	2.426608e-50	-8.615850e-47
Msa1395660	Msa1397120	0.819016	1.448651e-52	-8.615850e-47
Msa1395660	Msa1401530	0.812463	4.186019e-51	-8.615850e-47
Msa1395660	Msa1403340	0.822458	2.343753e-53	-8.615850e-47
Msa1395660	Msa1403890	0.819648	1.039830e-52	-8.615850e-47
Msa1395660	Msa1420140	0.816705	4.818733e-52	-8.615850e-47
Msa1395660	Msa1424450	0.821837	3.265244e-53	-8.615850e-47
Msa1395660	Msa1429900	0.805636	1.213322e-49	-8.615850e-47
Msa1395660	Msa1451620	-0.819407	1.180626e-52	-8.615850e-47
Msa1395660	Msa1452240	0.822393	2.427061e-53	-8.615850e-47
Msa1395660	Msa1454120	0.800665	1.295782e-48	-8.615850e-47
Msa1395660	Msa1455490	0.804950	1.688753e-49	-8.615850e-47
Msa1395660	Msa1464940	0.802275	6.060560e-49	-8.615850e-47
Msa1395660	Msa1466540	0.811204	7.868885e-51	-8.615850e-47
Msa0607540	Msa1395660	0.823553	1.301992e-53	-8.615850e-47
Msa0608620	Msa1395660	0.816768	4.664448e-52	-8.615850e-47
Msa0610430	Msa1395660	0.824082	9.788537e-54	-8.615850e-47
Msa0623080	Msa1395660	0.807436	5.059954e-50	-8.615850e-47
Msa0631200	Msa1395660	0.811543	6.643999e-51	-8.615850e-47
Msa0647830	Msa1395660	0.802862	4.587581e-49	-8.615850e-47
Msa0657610	Msa1395660	0.829309	5.532995e-55	-8.615850e-47
Msa0657970	Msa1395660	0.810811	9.573111e-51	-8.615850e-47
Msa0661190	Msa1395660	-0.802581	5.242646e-49	-8.615850e-47
Msa0662650	Msa1395660	0.817340	3.469649e-52	-8.615850e-47
Msa0665020	Msa1395660	0.801016	1.098504e-48	-8.615850e-47
Msa0669440	Msa1395660	0.822980	1.771925e-53	-8.615850e-47
Msa0673460	Msa1395660	0.804720	1.886525e-49	-8.615850e-47
Msa0688070	Msa1395660	0.808065	3.719525e-50	-8.615850e-47
Msa0690440	Msa1395660	0.816789	4.614940e-52	-8.615850e-47
Msa0693380	Msa1395660	0.808035	3.773462e-50	-8.615850e-47
Msa0708860	Msa1395660	0.821263	4.431840e-53	-8.615850e-47
Msa0715470	Msa1395660	0.830161	3.431208e-55	-8.615850e-47
Msa0715700	Msa1395660	0.815010	1.150627e-51	-8.615850e-47
Msa0731180	Msa1395660	0.806556	7.767077e-50	-8.615850e-47
Msa0731940	Msa1395660	0.800084	1.701562e-48	-8.615850e-47
Msa0743720	Msa1395660	0.808636	2.809910e-50	-8.615850e-47
Msa0744170	Msa1395660	-0.810785	9.696910e-51	-8.615850e-47
Msa0773840	Msa1395660	0.801592	8.371241e-49	-8.615850e-47
Msa0788710	Msa1395660	0.812418	4.283175e-51	-8.615850e-47
Msa0803890	Msa1395660	0.806703	7.232284e-50	-8.615850e-47
Msa0810220	Msa1395660	0.806733	7.126801e-50	-8.615850e-47
Msa0820850	Msa1395660	0.805519	1.283585e-49	-8.615850e-47
Msa0824680	Msa1395660	0.810437	1.153105e-50	-8.615850e-47
Msa0840820	Msa1395660	0.810109	1.357115e-50	-8.615850e-47
Msa0122590	Msa1395660	0.809278	2.047482e-50	-8.615850e-47
Msa0133130	Msa1395660	0.808456	3.069805e-50	-8.615850e-47
Msa0140860	Msa1395660	0.804921	1.712301e-49	-8.615850e-47
Msa0145310	Msa1395660	0.832218	1.071459e-55	-8.615850e-47
Msa0150820	Msa1395660	0.800961	1.127097e-48	-8.615850e-47
Msa0157290	Msa1395660	0.820844	5.532016e-53	-8.615850e-47
Msa0166870	Msa1395660	0.809569	1.773911e-50	-8.615850e-47
Msa0173990	Msa1395660	0.826527	2.583534e-54	-8.615850e-47
Msa0178930	Msa1395660	0.807919	3.994511e-50	-8.615850e-47
Msa0187250	Msa1395660	0.808093	3.667760e-50	-8.615850e-47
Msa0197660	Msa1395660	0.834397	3.068761e-56	-8.615850e-47
Msa0212990	Msa1395660	0.813603	2.354703e-51	-8.615850e-47
Msa0213520	Msa1395660	0.804212	2.407906e-49	-8.615850e-47
Msa0215320	Msa1395660	-0.805876	1.080322e-49	-8.615850e-47
Msa0217680	Msa1395660	0.804376	2.224920e-49	-8.615850e-47
Msa0223260	Msa1395660	0.802040	6.776160e-49	-8.615850e-47
Msa0228070	Msa1395660	0.804013	2.648728e-49	-8.615850e-47
Msa1228210	Msa1395660	0.816869	4.426382e-52	-8.615850e-47
Msa1233500	Msa1395660	0.829095	6.236615e-55	-8.615850e-47
Msa1238930	Msa1395660	0.827258	1.727448e-54	-8.615850e-47
Msa1240180	Msa1395660	0.817961	2.513629e-52	-8.615850e-47
Msa1240210	Msa1395660	0.814996	1.159243e-51	-8.615850e-47
Msa1250890	Msa1395660	0.818117	2.317462e-52	-8.615850e-47
Msa1267060	Msa1395660	0.820185	7.838275e-53	-8.615850e-47
Msa1276440	Msa1395660	0.836666	8.187085e-57	-8.615850e-47
Msa1277660	Msa1395660	0.804660	1.941380e-49	-8.615850e-47
Msa1278840	Msa1395660	0.801585	8.400504e-49	-8.615850e-47
Msa1279210	Msa1395660	0.808314	3.291946e-50	-8.615850e-47
Msa1283860	Msa1395660	0.804113	2.524490e-49	-8.615850e-47
Msa1284680	Msa1395660	0.801624	8.248242e-49	-8.615850e-47
Msa1305340	Msa1395660	0.813716	2.223224e-51	-8.615850e-47
Msa1306840	Msa1395660	0.800974	1.120416e-48	-8.615850e-47
Msa1307740	Msa1395660	0.802299	5.993759e-49	-8.615850e-47
Msa1308380	Msa1395660	0.814474	1.512505e-51	-8.615850e-47
Msa1314340	Msa1395660	0.820942	5.254641e-53	-8.615850e-47
Msa1320620	Msa1395660	0.828119	1.073388e-54	-8.615850e-47
Msa1322190	Msa1395660	0.800258	1.567873e-48	-8.615850e-47
Msa1331910	Msa1395660	0.810578	1.075359e-50	-8.615850e-47
Msa1333410	Msa1395660	0.800251	1.573351e-48	-8.615850e-47
Msa1340650	Msa1395660	0.804411	2.188038e-49	-8.615850e-47
Msa1343760	Msa1395660	0.807604	4.660360e-50	-8.615850e-47
Msa0369440	Msa1395660	0.804677	1.925501e-49	-8.615850e-47
Msa0371730	Msa1395660	0.807483	4.944113e-50	-8.615850e-47
Msa0376910	Msa1395660	0.812768	3.590573e-51	-8.615850e-47
Msa0379640	Msa1395660	0.828789	7.393132e-55	-8.615850e-47
Msa0380740	Msa1395660	0.809427	1.902428e-50	-8.615850e-47
Msa0389810	Msa1395660	0.815738	7.926274e-52	-8.615850e-47
Msa0395790	Msa1395660	0.820455	6.797803e-53	-8.615850e-47
Msa0395970	Msa1395660	0.801221	9.975213e-49	-8.615850e-47
Msa0398710	Msa1395660	0.802411	5.682964e-49	-8.615850e-47
Msa0412840	Msa1395660	0.831166	1.947170e-55	-8.615850e-47
Msa0431060	Msa1395660	0.825380	4.838546e-54	-8.615850e-47
Msa0436760	Msa1395660	0.803693	3.086325e-49	-8.615850e-47
Msa0442200	Msa1395660	0.803117	4.063247e-49	-8.615850e-47
Msa0443920	Msa1395660	0.832204	1.080373e-55	-8.615850e-47
Msa0453350	Msa1395660	0.804672	1.930307e-49	-8.615850e-47
Msa0457510	Msa1395660	0.800266	1.562075e-48	-8.615850e-47
Msa0466120	Msa1395660	0.823943	1.055000e-53	-8.615850e-47
Msa0466390	Msa1395660	0.808591	2.872457e-50	-8.615850e-47
Msa0471900	Msa1395660	0.814220	1.721238e-51	-8.615850e-47
Msa0475490	Msa1395660	0.801513	8.689181e-49	-8.615850e-47
Msa0477130	Msa1395660	-0.821030	5.015331e-53	-8.615850e-47
Msa0982270	Msa1395660	0.814417	1.557269e-51	-8.615850e-47
Msa0990960	Msa1395660	0.825522	4.478519e-54	-8.615850e-47
Msa0993600	Msa1395660	0.800568	1.356026e-48	-8.615850e-47
Msa1014540	Msa1395660	0.828875	7.049983e-55	-8.615850e-47
Msa1030970	Msa1395660	0.823379	1.429874e-53	-8.615850e-47
Msa1033410	Msa1395660	-0.812136	4.933490e-51	-8.615850e-47
Msa1039880	Msa1395660	0.808325	3.274589e-50	-8.615850e-47
Msa1046300	Msa1395660	0.803718	3.049732e-49	-8.615850e-47
Msa1073070	Msa1395660	-0.829531	4.887722e-55	-8.615850e-47
Msa1075220	Msa1395660	-0.816513	5.321208e-52	-8.615850e-47
Msa1075540	Msa1395660	0.816617	5.041614e-52	-8.615850e-47
Msa1082500	Msa1395660	0.832015	1.203153e-55	-8.615850e-47
Msa1083840	Msa1395660	0.801263	9.780334e-49	-8.615850e-47
Msa1085300	Msa1395660	0.819127	1.366874e-52	-8.615850e-47
Msa1089020	Msa1395660	0.813879	2.046455e-51	-8.615850e-47
Msa1090260	Msa1395660	0.819110	1.379473e-52	-8.615850e-47
Msa1095480	Msa1395660	0.802328	5.911271e-49	-8.615850e-47
Msa0239800	Msa1395660	0.829695	4.458649e-55	-8.615850e-47
Msa0243710	Msa1395660	0.809011	2.335929e-50	-8.615850e-47
Msa0258760	Msa1395660	0.814842	1.254116e-51	-8.615850e-47
Msa0264150	Msa1395660	0.811004	8.693967e-51	-8.615850e-47
Msa0269450	Msa1395660	0.819481	1.135571e-52	-8.615850e-47
Msa0277820	Msa1395660	0.805457	1.322976e-49	-8.615850e-47
Msa0280090	Msa1395660	0.814090	1.838945e-51	-8.615850e-47
Msa0282250	Msa1395660	0.800188	1.620627e-48	-8.615850e-47
Msa0285450	Msa1395660	0.810292	1.239448e-50	-8.615850e-47
Msa0287410	Msa1395660	0.800444	1.437056e-48	-8.615850e-47
Msa0299580	Msa1395660	0.804910	1.721611e-49	-8.615850e-47
Msa0302580	Msa1395660	-0.818263	2.147694e-52	-8.615850e-47
Msa0306210	Msa1395660	-0.810389	1.180811e-50	-8.615850e-47
Msa0309550	Msa1395660	0.812841	3.460238e-51	-8.615850e-47
Msa0317510	Msa1395660	0.831839	1.329235e-55	-8.615850e-47
Msa0317720	Msa1395660	0.806478	8.069197e-50	-8.615850e-47
Msa0317750	Msa1395660	0.802989	4.316704e-49	-8.615850e-47
Msa0319170	Msa1395660	0.847085	1.445010e-59	-8.615850e-47
Msa0320740	Msa1395660	0.808133	3.596412e-50	-8.615850e-47
Msa0323080	Msa1395660	0.812335	4.464744e-51	-8.615850e-47
Msa0326520	Msa1395660	0.815109	1.094052e-51	-8.615850e-47
Msa0338110	Msa1395660	0.812456	4.201610e-51	-8.615850e-47
Msa0340450	Msa1395660	0.803001	4.293201e-49	-8.615850e-47
Msa0344830	Msa1395660	0.826292	2.939125e-54	-8.615850e-47
Msa0347360	Msa1395660	0.807988	3.862920e-50	-8.615850e-47
Msa1116130	Msa1395660	-0.803777	2.964510e-49	-8.615850e-47
Msa1119480	Msa1395660	0.815311	9.865098e-52	-8.615850e-47
Msa1124540	Msa1395660	-0.814027	1.899241e-51	-8.615850e-47
Msa1131220	Msa1395660	0.825595	4.303297e-54	-8.615850e-47
Msa1143930	Msa1395660	-0.800285	1.548686e-48	-8.615850e-47
Msa1154280	Msa1395660	0.810911	9.106649e-51	-8.615850e-47
Msa1162550	Msa1395660	-0.821092	4.851283e-53	-8.615850e-47
Msa1174040	Msa1395660	0.813432	2.566888e-51	-8.615850e-47
Msa1179460	Msa1395660	0.816283	5.988604e-52	-8.615850e-47
Msa1183100	Msa1395660	-0.812270	4.613110e-51	-8.615850e-47
Msa1185980	Msa1395660	0.813735	2.201896e-51	-8.615850e-47
Msa1193290	Msa1395660	0.800976	1.119075e-48	-8.615850e-47
Msa1195600	Msa1395660	0.807978	3.881709e-50	-8.615850e-47
Msa1199220	Msa1395660	0.818323	2.081845e-52	-8.615850e-47
Msa1202770	Msa1395660	-0.800233	1.586841e-48	-8.615850e-47
Msa1203250	Msa1395660	0.803943	2.739107e-49	-8.615850e-47
Msa1205130	Msa1395660	0.802121	6.520316e-49	-8.615850e-47
Msa1214890	Msa1395660	0.813789	2.142590e-51	-8.615850e-47
Msa1217430	Msa1395660	-0.804277	2.333617e-49	-8.615850e-47
Msa1224480	Msa1395660	0.810191	1.303417e-50	-8.615850e-47
Msa0484780	Msa1395660	0.830484	2.862221e-55	-8.615850e-47
Msa0495320	Msa1395660	0.806561	7.746995e-50	-8.615850e-47
Msa0495330	Msa1395660	0.816911	4.331943e-52	-8.615850e-47
Msa0512750	Msa1395660	0.821567	3.770815e-53	-8.615850e-47
Msa0512900	Msa1395660	0.802610	5.169023e-49	-8.615850e-47
Msa0515010	Msa1395660	0.818706	1.704563e-52	-8.615850e-47
Msa0519000	Msa1395660	0.810398	1.175609e-50	-8.615850e-47
Msa0523460	Msa1395660	0.816768	4.663670e-52	-8.615850e-47
Msa0530940	Msa1395660	0.802509	5.423888e-49	-8.615850e-47
Msa0536220	Msa1395660	0.827771	1.301502e-54	-8.615850e-47
Msa0553460	Msa1395660	0.821499	3.908521e-53	-8.615850e-47
Msa0555020	Msa1395660	0.829906	3.959330e-55	-8.615850e-47
Msa0558690	Msa1395660	0.810284	1.244434e-50	-8.615850e-47
Msa0562440	Msa1395660	0.820061	8.369793e-53	-8.615850e-47
Msa0563840	Msa1395660	0.801738	7.813285e-49	-8.615850e-47
Msa0577500	Msa1395660	0.801134	1.039335e-48	-8.615850e-47
Msa0590840	Msa1395660	0.814709	1.341611e-51	-8.615850e-47
Msa0599580	Msa1395660	0.815639	8.341451e-52	-8.615850e-47
Msa0601850	Msa1395660	0.802709	4.932807e-49	-8.615850e-47
Msa0860410	Msa1395660	0.814466	1.518855e-51	-8.615850e-47
Msa0861130	Msa1395660	0.811220	7.806135e-51	-8.615850e-47
Msa0880140	Msa1395660	0.818038	2.413841e-52	-8.615850e-47
Msa0896750	Msa1395660	0.800116	1.676231e-48	-8.615850e-47
Msa0907070	Msa1395660	0.813632	2.319528e-51	-8.615850e-47
Msa0922410	Msa1395660	0.811965	5.377172e-51	-8.615850e-47
Msa0935910	Msa1395660	0.818815	1.610092e-52	-8.615850e-47
Msa0942200	Msa1395660	0.806305	8.776225e-50	-8.615850e-47
Msa0947660	Msa1395660	0.825901	3.641089e-54	-8.615850e-47
Msa0959360	Msa1395660	0.800869	1.176977e-48	-8.615850e-47
Msa0968680	Msa1395660	0.803110	4.076262e-49	-8.615850e-47
Msa0973100	Msa1395660	0.800874	1.174143e-48	-8.615850e-47
Msa0975220	Msa1395660	0.805729	1.160035e-49	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1395660	MtrunA17_Chr4g0007651	56.643	143	32	3	1	113	78	220	5.35e-36	122
Msa1395660	MtrunA17_Chr4g0007851	56.863	102	25	2	31	113	49	150	2.28e-24	90.5
Msa1395660	MtrunA17_Chr3g0139751	43.077	130	30	3	1	113	56	158	2.35e-23	88.2
Msa1395660	MtrunA17_Chr4g0014231	39.231	130	32	4	2	113	75	175	3.65e-18	75.1
Msa1395660	MtrunA17_Chr5g0405871	42.636	129	28	4	2	113	56	155	2.28e-17	72.8
Msa1395660	MtrunA17_Chr5g0405891	41.860	129	29	4	2	113	56	155	7.60e-17	71.2
Msa1395660	MtrunA17_Chr7g0221641	41.860	129	29	4	2	113	57	156	1.31e-16	70.9
Msa1395660	MtrunA17_Chr1g0202631	45.652	92	33	1	39	113	205	296	1.34e-16	73.2
Msa1395660	MtrunA17_Chr7g0259261	39.535	129	32	3	2	113	57	156	2.97e-16	69.7
Msa1395660	MtrunA17_Chr7g0259271	41.860	129	29	4	2	113	57	156	5.70e-16	69.3
Msa1395660	MtrunA17_Chr4g0014271	35.115	131	32	3	1	113	58	153	1.58e-15	67.8
Msa1395660	MtrunA17_Chr4g0015171	34.615	130	39	4	1	113	60	160	2.80e-15	67.4
Msa1395660	MtrunA17_Chr7g0259231	36.434	129	38	3	2	113	58	159	3.39e-15	67.0
Msa1395660	MtrunA17_Chr8g0361911	39.535	129	33	4	2	113	57	157	9.69e-15	65.9
Msa1395660	MtrunA17_Chr7g0259381	36.923	130	35	5	2	113	44	144	1.76e-14	65.1
Msa1395660	MtrunA17_Chr4g0014211	36.154	130	37	3	1	113	63	163	2.20e-14	65.1
Msa1395660	MtrunA17_Chr4g0014241	37.692	130	29	3	1	113	56	150	2.53e-14	64.7
Msa1395660	MtrunA17_Chr5g0438791	32.812	128	40	2	2	112	57	155	4.56e-14	64.3
Msa1395660	MtrunA17_Chr7g0259371	36.154	130	36	5	2	113	58	158	8.07e-14	63.5
Msa1395660	MtrunA17_Chr4g0014261	32.308	130	36	3	1	113	58	152	2.84e-13	62.0
Msa1395660	MtrunA17_Chr7g0221621	38.760	129	33	4	2	113	57	156	1.10e-12	60.5
Msa1395660	MtrunA17_Chr4g0015151	32.308	130	42	3	1	113	60	160	1.40e-12	60.5
Msa1395660	MtrunA17_Chr1g0167301	47.458	59	30	1	50	107	81	139	3.03e-12	61.2
Msa1395660	MtrunA17_Chr4g0009571	37.209	129	35	5	2	113	56	155	4.84e-12	58.9
Msa1395660	MtrunA17_Chr7g0259441	43.564	101	41	5	2	88	58	156	1.06e-11	58.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1395660	AT4G34210.1	35.659	129	35	2	2	113	55	152	2.68e-17	72.8
Msa1395660	AT2G25700.1	36.434	129	43	3	2	113	57	163	6.07e-17	72.0
Msa1395660	AT1G20140.1	37.984	129	41	4	2	113	57	163	1.15e-16	71.6
Msa1395660	AT1G75950.1	38.760	129	39	3	2	113	55	160	1.89e-16	70.9
Msa1395660	AT4G34470.1	34.884	129	36	2	2	113	55	152	2.42e-16	70.5
Msa1395660	AT3G21850.1	33.077	130	39	3	1	113	55	153	1.22e-15	68.6
Msa1395660	AT5G42190.1	40.310	129	47	3	2	113	56	171	9.98e-15	66.6
Msa1395660	AT3G21860.1	33.077	130	39	2	1	113	54	152	3.87e-14	64.7
Msa1395660	AT3G21830.1	33.077	130	39	3	1	113	54	152	1.29e-12	60.8
Msa1395660	AT3G25650.1	34.091	132	50	5	1	113	54	167	1.76e-11	58.2

Find 24 sgRNAs with CRISPR-Local

Find 26 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CTTTCGGGCTGCGGCTTATT+TGG	0.104601	tig0021957:+106544	Msa1395660:CDS
TACGTTGTTTGAACTCTTTC+GGG	0.185695	tig0021957:+106529	Msa1395660:CDS
TTACGTTGTTTGAACTCTTT+CGG	0.248726	tig0021957:+106528	Msa1395660:CDS
AGTGAGTAAGGAGGATGATC+TGG	0.299573	tig0021957:+106469	Msa1395660:CDS
TTTCGGGCTGCGGCTTATTT+GGG	0.306367	tig0021957:+106545	Msa1395660:CDS
ACTAAACTCCTCCTCTTCCT+TGG	0.354072	tig0021957:-106624	None:intergenic
TTTGGGTGTTGATAGTTTGC+TGG	0.372447	tig0021957:+106562	Msa1395660:CDS
CTAAACTCCTCCTCTTCCTT+GGG	0.433716	tig0021957:-106623	None:intergenic
CAAGTTTCAGCAGCAGCCTT+AGG	0.454196	tig0021957:-106434	None:intergenic
TGCAGAGAAAGAAGTGAGTA+AGG	0.460165	tig0021957:+106457	Msa1395660:CDS
GGAGGATGATCTGGAGAAGT+GGG	0.488161	tig0021957:+106478	Msa1395660:CDS
AGGAGGATGATCTGGAGAAG+TGG	0.503398	tig0021957:+106477	Msa1395660:CDS
GGAAGAGGAGGAGTTTAGTA+AGG	0.507410	tig0021957:+106628	Msa1395660:CDS
GTTTGAACTCTTTCGGGCTG+CGG	0.508842	tig0021957:+106535	Msa1395660:CDS
TTGCTGAAGAAGAAAAGCCT+TGG	0.514532	tig0021957:+106378	Msa1395660:CDS
TTCGAGAGATTTCTCTCCCA+AGG	0.518718	tig0021957:+106607	Msa1395660:CDS
AGATTTCTCTCCCAAGGAAG+AGG	0.524351	tig0021957:+106613	Msa1395660:CDS
AAGACCGATGAAAAGAAATC+CGG	0.542891	tig0021957:+106401	Msa1395660:CDS
ATCCGGTGAAGATGTTCCTA+AGG	0.572791	tig0021957:+106418	Msa1395660:CDS
GTTTGCTGGAGCTGACATGT+TGG	0.578098	tig0021957:+106576	Msa1395660:CDS
AGCCTTAGGAACATCTTCAC+CGG	0.585183	tig0021957:-106420	None:intergenic
AGAGAAAGAAGTGAGTAAGG+AGG	0.588345	tig0021957:+106460	Msa1395660:CDS
TTTCTCTCCCAAGGAAGAGG+AGG	0.597882	tig0021957:+106616	Msa1395660:CDS
AGTTTAGTAAGGAAAATCAA+TGG	0.605827	tig0021957:+106639	Msa1395660:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!	AGTTTAGTAAGGAAAATCAA+TGG	+	tig0021957:106639-106658	Msa1395660:CDS	25.0%
	TTACGTTGTTTGAACTCTTT+CGG	+	tig0021957:106528-106547	Msa1395660:CDS	30.0%
	AAGACCGATGAAAAGAAATC+CGG	+	tig0021957:106401-106420	Msa1395660:CDS	35.0%
!	TTCACCGGATTTCTTTTCAT+CGG	-	tig0021957:106408-106427	None:intergenic	35.0%
	TACGTTGTTTGAACTCTTTC+GGG	+	tig0021957:106529-106548	Msa1395660:CDS	35.0%
	TTGCTGAAGAAGAAAAGCCT+TGG	+	tig0021957:106378-106397	Msa1395660:CDS	40.0%
!	TTCTTTTCATCGGTCTTCCA+AGG	-	tig0021957:106398-106417	None:intergenic	40.0%
	TGCAGAGAAAGAAGTGAGTA+AGG	+	tig0021957:106457-106476	Msa1395660:CDS	40.0%
	AGAGAAAGAAGTGAGTAAGG+AGG	+	tig0021957:106460-106479	Msa1395660:CDS	40.0%
!!	TTTGGGTGTTGATAGTTTGC+TGG	+	tig0021957:106562-106581	Msa1395660:CDS	40.0%
	ATCCGGTGAAGATGTTCCTA+AGG	+	tig0021957:106418-106437	Msa1395660:CDS	45.0%
	AGCCTTAGGAACATCTTCAC+CGG	-	tig0021957:106423-106442	None:intergenic	45.0%
	AGTGAGTAAGGAGGATGATC+TGG	+	tig0021957:106469-106488	Msa1395660:CDS	45.0%
	TTCGAGAGATTTCTCTCCCA+AGG	+	tig0021957:106607-106626	Msa1395660:CDS	45.0%
	AGATTTCTCTCCCAAGGAAG+AGG	+	tig0021957:106613-106632	Msa1395660:CDS	45.0%
	CTAAACTCCTCCTCTTCCTT+GGG	-	tig0021957:106626-106645	None:intergenic	45.0%
	ACTAAACTCCTCCTCTTCCT+TGG	-	tig0021957:106627-106646	None:intergenic	45.0%
	GGAAGAGGAGGAGTTTAGTA+AGG	+	tig0021957:106628-106647	Msa1395660:CDS	45.0%
	CAAGTTTCAGCAGCAGCCTT+AGG	-	tig0021957:106437-106456	None:intergenic	50.0%
	AGGAGGATGATCTGGAGAAG+TGG	+	tig0021957:106477-106496	Msa1395660:CDS	50.0%
	GGAGGATGATCTGGAGAAGT+GGG	+	tig0021957:106478-106497	Msa1395660:CDS	50.0%
	GTTTGAACTCTTTCGGGCTG+CGG	+	tig0021957:106535-106554	Msa1395660:CDS	50.0%
	TTTCGGGCTGCGGCTTATTT+GGG	+	tig0021957:106545-106564	Msa1395660:CDS	50.0%
!	GTTTGCTGGAGCTGACATGT+TGG	+	tig0021957:106576-106595	Msa1395660:CDS	50.0%
	TTTCTCTCCCAAGGAAGAGG+AGG	+	tig0021957:106616-106635	Msa1395660:CDS	50.0%
	CTTTCGGGCTGCGGCTTATT+TGG	+	tig0021957:106544-106563	Msa1395660:CDS	55.0%

Chromosome	Type	Strat	End	Strand	Name
tig0021957	gene	106332	106673	106332	ID=Msa1395660;Name=Msa1395660
tig0021957	mRNA	106332	106673	106332	ID=Msa1395660-mRNA-1;Parent=Msa1395660;Name=Msa1395660-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|113
tig0021957	exon	106332	106673	106332	ID=Msa1395660-mRNA-1:exon:14976;Parent=Msa1395660-mRNA-1
tig0021957	CDS	106332	106673	106332	ID=Msa1395660-mRNA-1:cds;Parent=Msa1395660-mRNA-1

Gene Sequence	>Msa1395660 ATGGTAATTGATTATTGCAAGAAACATCATGTTGAAGCTGCTGCGTTTGCTGAAGAAGAAAAGCCTTGGAAGACCGATGAAAAGAAATCCGGTGAAGATGTTCCTAAGGCTGCTGCTGAAACTTGTGCAGAGAAAGAAGTGAGTAAGGAGGATGATCTGGAGAAGTGGGATGCTGAATTTGTTAATGTTGATCATGTTACGTTGTTTGAACTCTTTCGGGCTGCGGCTTATTTGGGTGTTGATAGTTTGCTGGAGCTGACATGTTGGACTGTGACTTCGAGAGATTTCTCTCCCAAGGAAGAGGAGGAGTTTAGTAAGGAAAATCAATGGCATTTTGAATGA
Protein sequence	>Msa1395660 MVIDYCKKHHVEAAAFAEEEKPWKTDEKKSGEDVPKAAAETCAEKEVSKEDDLEKWDAEFVNVDHVTLFELFRAAAYLGVDSLLELTCWTVTSRDFSPKEEEEFSKENQWHFE*