AlfalfaGEDB | Msa0678490

M. sativa cultivar zhongmu-4 / Msa0678490

KEGG: K08235
GO: GO:0003674 GO:0003824 GO:0016740 GO:0016757 GO:0016758 GO:0016762 GO:0046527
PFAM: PF00722.24

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0678490	ACJ83285.1	96.753	154	5	0	1	154	1	154	2.22e-104	308

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0678490	sp\|A0A067XRK9\|XTH6_DIOKA	84.733	131	20	0	24	154	30	160	7.92e-81	243

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0678490	B7FF95	96.753	154	5	0	1	154	1	154	1.06e-104	308

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0005890	Msa0678490	0.811988	5.314191e-51	-8.615850e-47
Msa0018160	Msa0678490	0.812562	3.982026e-51	-8.615850e-47
Msa0025160	Msa0678490	0.802101	6.580850e-49	-8.615850e-47
Msa0025580	Msa0678490	0.815344	9.699009e-52	-8.615850e-47
Msa0027280	Msa0678490	0.808105	3.646714e-50	-8.615850e-47
Msa0050660	Msa0678490	0.813722	2.216178e-51	-8.615850e-47
Msa0050700	Msa0678490	0.813057	3.103790e-51	-8.615850e-47
Msa0050790	Msa0678490	0.813494	2.487583e-51	-8.615850e-47
Msa0054690	Msa0678490	0.831727	1.416611e-55	-8.615850e-47
Msa0071850	Msa0678490	0.838359	3.014131e-57	-8.615850e-47
Msa0071860	Msa0678490	0.843833	1.098378e-58	-8.615850e-47
Msa0073120	Msa0678490	0.808360	3.218088e-50	-8.615850e-47
Msa0090400	Msa0678490	0.802192	6.303427e-49	-8.615850e-47
Msa0108880	Msa0678490	0.808531	2.958474e-50	-8.615850e-47
Msa0616210	Msa0678490	0.818586	1.814759e-52	-8.615850e-47
Msa0640200	Msa0678490	0.970949	2.117493e-132	-8.615850e-47
Msa0658640	Msa0678490	0.801354	9.369878e-49	-8.615850e-47
Msa0661150	Msa0678490	0.844476	7.382304e-59	-8.615850e-47
Msa0666700	Msa0678490	0.803778	2.962955e-49	-8.615850e-47
Msa0675330	Msa0678490	0.859931	2.938810e-63	-8.615850e-47
Msa0678490	Msa0693890	0.800771	1.232653e-48	-8.615850e-47
Msa0678490	Msa0699540	0.817087	3.954713e-52	-8.615850e-47
Msa0678490	Msa0700460	0.843887	1.062440e-58	-8.615850e-47
Msa0678490	Msa0713960	0.812532	4.044366e-51	-8.615850e-47
Msa0678490	Msa0735780	0.810163	1.321570e-50	-8.615850e-47
Msa0678490	Msa0738700	0.822551	2.230334e-53	-8.615850e-47
Msa0678490	Msa0761670	0.804156	2.473519e-49	-8.615850e-47
Msa0678490	Msa0795870	0.819968	8.788860e-53	-8.615850e-47
Msa0678490	Msa0819170	0.819139	1.358902e-52	-8.615850e-47
Msa0678490	Msa0833650	0.823459	1.369220e-53	-8.615850e-47
Msa0678490	Msa0859290	0.833127	6.373206e-56	-8.615850e-47
Msa0678490	Msa1029800	0.803357	3.622930e-49	-8.615850e-47
Msa0678490	Msa1042160	0.842533	2.439923e-58	-8.615850e-47
Msa0678490	Msa1042190	0.844024	9.768018e-59	-8.615850e-47
Msa0678490	Msa1078820	0.802943	4.413574e-49	-8.615850e-47
Msa0678490	Msa1080000	0.810822	9.519533e-51	-8.615850e-47
Msa0678490	Msa1116660	0.801247	9.852132e-49	-8.615850e-47
Msa0678490	Msa1132530	0.803277	3.763489e-49	-8.615850e-47
Msa0678490	Msa1132840	0.815067	1.117570e-51	-8.615850e-47
Msa0678490	Msa1167470	0.837495	5.025776e-57	-8.615850e-47
Msa0678490	Msa1226520	0.803500	3.384078e-49	-8.615850e-47
Msa0678490	Msa1240260	0.804365	2.237207e-49	-8.615850e-47
Msa0678490	Msa1240770	0.813695	2.247248e-51	-8.615850e-47
Msa0678490	Msa1268630	0.827630	1.406628e-54	-8.615850e-47
Msa0678490	Msa1315160	0.805643	1.208940e-49	-8.615850e-47
Msa0678490	Msa1343180	0.802296	6.000378e-49	-8.615850e-47
Msa0678490	Msa1359690	0.833567	4.952576e-56	-8.615850e-47
Msa0678490	Msa1384460	0.810347	1.205824e-50	-8.615850e-47
Msa0678490	Msa1400010	0.803386	3.572994e-49	-8.615850e-47
Msa0678490	Msa1409410	0.841760	3.907180e-58	-8.615850e-47
Msa0678490	Msa1415540	0.833063	6.612936e-56	-8.615850e-47
Msa0678490	Msa1437930	0.806916	6.519447e-50	-8.615850e-47
Msa0678490	Msa1440630	0.814021	1.904741e-51	-8.615850e-47
Msa0121330	Msa0678490	0.805733	1.157733e-49	-8.615850e-47
Msa0125210	Msa0678490	0.810657	1.033558e-50	-8.615850e-47
Msa0128310	Msa0678490	0.802930	4.440102e-49	-8.615850e-47
Msa0140280	Msa0678490	0.806415	8.317916e-50	-8.615850e-47
Msa0146040	Msa0678490	0.804060	2.589628e-49	-8.615850e-47
Msa0149350	Msa0678490	0.812967	3.248142e-51	-8.615850e-47
Msa0158860	Msa0678490	0.820647	6.141278e-53	-8.615850e-47
Msa0188610	Msa0678490	0.835433	1.682611e-56	-8.615850e-47
Msa0200050	Msa0678490	0.803309	3.708014e-49	-8.615850e-47
Msa0230800	Msa0678490	0.817404	3.356813e-52	-8.615850e-47
Msa0230870	Msa0678490	0.811341	7.348747e-51	-8.615850e-47
Msa0367690	Msa0678490	0.804306	2.301822e-49	-8.615850e-47
Msa0369790	Msa0678490	0.806957	6.390902e-50	-8.615850e-47
Msa0380620	Msa0678490	0.808816	2.571958e-50	-8.615850e-47
Msa0380670	Msa0678490	0.813885	2.040286e-51	-8.615850e-47
Msa0418970	Msa0678490	0.815688	8.130728e-52	-8.615850e-47
Msa0419700	Msa0678490	0.820533	6.524741e-53	-8.615850e-47
Msa0430300	Msa0678490	0.810232	1.276621e-50	-8.615850e-47
Msa0435210	Msa0678490	0.819696	1.014019e-52	-8.615850e-47
Msa0450160	Msa0678490	0.816138	6.452872e-52	-8.615850e-47
Msa0464000	Msa0678490	0.808142	3.581051e-50	-8.615850e-47
Msa0479320	Msa0678490	0.802729	4.886623e-49	-8.615850e-47
Msa0270340	Msa0678490	0.829647	4.578458e-55	-8.615850e-47
Msa0298470	Msa0678490	0.802578	5.248953e-49	-8.615850e-47
Msa0359020	Msa0678490	0.807955	3.925788e-50	-8.615850e-47
Msa0511750	Msa0678490	0.808059	3.730483e-50	-8.615850e-47
Msa0517250	Msa0678490	0.805954	1.040035e-49	-8.615850e-47
Msa0528570	Msa0678490	0.842414	2.623206e-58	-8.615850e-47
Msa0530780	Msa0678490	0.814369	1.596017e-51	-8.615850e-47
Msa0541300	Msa0678490	0.847865	8.820587e-60	-8.615850e-47
Msa0541310	Msa0678490	0.845814	3.211710e-59	-8.615850e-47
Msa0543660	Msa0678490	0.965304	1.971007e-124	-8.615850e-47
Msa0548470	Msa0678490	0.832474	9.259656e-56	-8.615850e-47
Msa0557460	Msa0678490	0.828782	7.423785e-55	-8.615850e-47
Msa0567170	Msa0678490	0.805816	1.112250e-49	-8.615850e-47
Msa0580370	Msa0678490	0.819382	1.196056e-52	-8.615850e-47
Msa0584420	Msa0678490	0.955496	2.650816e-113	-8.615850e-47
Msa0585020	Msa0678490	0.864864	8.942287e-65	-8.615850e-47
Msa0587620	Msa0678490	0.813689	2.253641e-51	-8.615850e-47
Msa0597270	Msa0678490	0.849416	3.279865e-60	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0678490	MtrunA17_Chr4g0023961	96.753	154	5	0	1	154	1	154	8.27e-108	308
Msa0678490	MtrunA17_Chr2g0323161	81.579	152	27	1	3	154	2	152	4.15e-90	264
Msa0678490	MtrunA17_Chr4g0054431	52.667	150	68	2	8	154	13	162	8.48e-53	169
Msa0678490	MtrunA17_Chr7g0252601	51.282	156	68	2	7	154	6	161	3.99e-52	167
Msa0678490	MtrunA17_Chr4g0054451	52.632	152	67	3	8	154	13	164	6.15e-52	167
Msa0678490	MtrunA17_Chr3g0122021	53.103	145	64	2	13	154	14	157	1.79e-51	165
Msa0678490	MtrunA17_Chr3g0122031	53.103	145	64	2	13	154	14	157	1.97e-51	165
Msa0678490	MtrunA17_Chr7g0252621	51.282	156	68	2	7	154	6	161	2.48e-51	165
Msa0678490	MtrunA17_Chr7g0252631	51.282	156	68	2	7	154	6	161	3.22e-51	165
Msa0678490	MtrunA17_Chr4g0071341	54.348	138	61	1	19	154	17	154	3.87e-50	162
Msa0678490	MtrunA17_Chr8g0377841	50.340	147	70	2	11	154	14	160	4.88e-50	161
Msa0678490	MtrunA17_Chr8g0389641	53.147	143	63	2	15	154	17	158	5.66e-50	160
Msa0678490	MtrunA17_Chr7g0258911	52.414	145	67	1	12	154	9	153	5.37e-49	159
Msa0678490	MtrunA17_Chr6g0461731	50.318	157	65	2	11	154	28	184	6.25e-49	159
Msa0678490	MtrunA17_Chr6g0461761	49.686	159	67	2	9	154	3	161	7.56e-49	159
Msa0678490	MtrunA17_Chr4g0072611	50.336	149	72	1	8	154	6	154	1.16e-48	158
Msa0678490	MtrunA17_Chr1g0206681	48.684	152	73	2	8	154	12	163	5.83e-48	156
Msa0678490	MtrunA17_Chr1g0206081	49.677	155	67	3	11	154	13	167	6.86e-47	154
Msa0678490	MtrunA17_Chr2g0299061	50.000	148	71	2	10	154	8	155	2.97e-46	152
Msa0678490	MtrunA17_Chr4g0072671	52.985	134	61	1	23	154	22	155	4.06e-46	151
Msa0678490	MtrunA17_Chr5g0443391	46.541	159	78	3	1	154	1	157	1.90e-44	147
Msa0678490	MtrunA17_Chr6g0486581	44.898	147	81	0	8	154	7	153	3.24e-44	147
Msa0678490	MtrunA17_Chr4g0072601	56.522	115	50	0	40	154	43	157	1.34e-42	142
Msa0678490	MtrunA17_Chr3g0096651	56.250	112	49	0	43	154	48	159	5.15e-42	141
Msa0678490	MtrunA17_Chr4g0072681	60.227	88	35	0	67	154	25	112	1.76e-36	125
Msa0678490	MtrunA17_Chr8g0340001	55.556	99	44	0	56	154	8	106	3.95e-36	124
Msa0678490	MtrunA17_Chr8g0375981	43.671	158	74	5	11	154	9	165	1.48e-31	115
Msa0678490	MtrunA17_Chr1g0161951	41.358	162	82	5	5	154	7	167	4.51e-31	114
Msa0678490	MtrunA17_Chr7g0264731	40.972	144	72	3	24	154	29	172	1.14e-29	109
Msa0678490	MtrunA17_Chr2g0303861	40.458	131	75	2	27	154	29	159	2.05e-29	108
Msa0678490	MtrunA17_Chr4g0028221	41.176	136	72	3	27	154	50	185	1.70e-28	106
Msa0678490	MtrunA17_Chr1g0180451	45.536	112	53	2	51	154	64	175	2.93e-28	105
Msa0678490	MtrunA17_Chr2g0327411	36.416	173	90	4	1	154	18	189	2.42e-27	103
Msa0678490	MtrunA17_Chr7g0235541	54.545	88	34	2	72	154	1	87	1.07e-26	99.8
Msa0678490	MtrunA17_Chr5g0410621	40.411	146	73	4	23	154	31	176	1.17e-26	102
Msa0678490	MtrunA17_Chr8g0365231	44.167	120	62	2	40	154	61	180	1.22e-26	101
Msa0678490	MtrunA17_Chr8g0382041	41.525	118	63	2	43	154	52	169	1.90e-25	99.0
Msa0678490	MtrunA17_Chr8g0390201	58.462	65	27	0	90	154	15	79	5.15e-24	92.8
Msa0678490	MtrunA17_Chr2g0303721	35.878	131	73	3	27	154	30	152	4.27e-23	91.7
Msa0678490	MtrunA17_Chr8g0390181	36.585	82	51	1	12	92	12	93	9.03e-12	58.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0678490	AT4G03210.1	72.185	151	35	1	11	154	6	156	4.52e-78	233
Msa0678490	AT4G03210.2	76.991	113	20	1	48	154	16	128	1.19e-58	183
Msa0678490	AT5G13870.2	51.899	158	72	2	1	154	4	161	3.20e-52	167
Msa0678490	AT5G13870.1	51.899	158	72	2	1	154	4	161	3.20e-52	167
Msa0678490	AT5G13870.3	51.899	158	72	2	1	154	4	161	3.20e-52	167
Msa0678490	AT4G37800.1	51.634	153	68	3	8	154	12	164	3.65e-52	167
Msa0678490	AT5G65730.1	50.000	150	71	3	8	154	17	165	3.27e-50	162
Msa0678490	AT1G11545.1	51.875	160	70	3	2	154	11	170	3.28e-50	163
Msa0678490	AT3G23730.1	53.061	147	63	3	11	154	13	156	2.18e-49	160
Msa0678490	AT5G57550.1	50.000	154	69	2	9	154	6	159	2.16e-48	157
Msa0678490	AT4G14130.1	50.641	156	72	3	2	154	4	157	5.48e-48	157
Msa0678490	AT5G57560.1	47.368	152	76	2	5	154	3	152	1.36e-47	155
Msa0678490	AT4G25810.1	48.980	147	72	2	11	154	9	155	4.59e-47	154
Msa0678490	AT4G30270.1	48.276	145	73	1	12	154	9	153	5.32e-47	154
Msa0678490	AT2G14620.1	49.007	151	72	2	9	154	16	166	1.11e-45	151
Msa0678490	AT2G06850.1	55.385	130	56	1	27	154	35	164	1.44e-45	150
Msa0678490	AT2G18800.1	49.342	152	70	2	5	154	11	157	6.36e-45	149
Msa0678490	AT4G28850.1	46.897	145	71	1	16	154	12	156	5.16e-43	144
Msa0678490	AT5G57530.1	52.586	116	55	0	39	154	41	156	1.30e-42	143
Msa0678490	AT5G48070.1	54.867	113	51	0	42	154	47	159	2.36e-42	142
Msa0678490	AT4G25820.1	47.826	138	70	1	19	154	22	159	2.50e-42	142
Msa0678490	AT5G57540.1	52.586	116	55	0	39	154	40	155	6.47e-42	141
Msa0678490	AT4G13090.1	44.375	160	81	2	3	154	2	161	2.58e-40	137
Msa0678490	AT4G13080.1	51.538	130	60	2	27	154	39	167	4.69e-40	136
Msa0678490	AT2G14620.2	57.576	99	42	0	56	154	18	116	5.07e-40	135
Msa0678490	AT2G06850.2	58.416	101	42	0	54	154	4	104	1.01e-38	131
Msa0678490	AT2G14620.3	58.889	90	37	0	65	154	16	105	6.45e-38	129
Msa0678490	AT3G25050.1	45.385	130	69	1	27	154	35	164	1.70e-36	127
Msa0678490	AT4G30290.1	53.097	113	53	0	42	154	42	154	5.14e-36	125
Msa0678490	AT1G65310.1	51.515	99	48	0	56	154	61	159	2.24e-35	124
Msa0678490	AT1G65310.2	51.515	99	48	0	56	154	83	181	2.77e-35	124
Msa0678490	AT4G30280.1	51.515	99	48	0	56	154	61	159	5.17e-35	123
Msa0678490	AT3G44990.1	45.455	143	70	3	20	154	32	174	7.10e-34	120
Msa0678490	AT2G01850.1	43.312	157	80	4	5	154	11	165	2.81e-30	112
Msa0678490	AT2G36870.2	40.288	139	75	2	24	154	40	178	3.90e-30	108
Msa0678490	AT1G14720.1	41.026	156	83	4	8	154	10	165	6.14e-30	111
Msa0678490	AT2G36870.1	40.441	136	73	2	27	154	43	178	1.83e-29	109
Msa0678490	AT1G10550.1	46.552	116	57	2	44	154	60	175	2.20e-28	106
Msa0678490	AT3G48580.1	43.860	114	63	1	41	154	49	161	9.37e-28	104
Msa0678490	AT1G32170.1	40.252	159	82	5	8	154	9	166	2.12e-27	104
Msa0678490	AT4G18990.1	43.411	129	60	3	39	154	46	174	5.92e-27	103
Msa0678490	AT3G48580.3	44.000	100	55	1	55	154	4	102	1.32e-24	94.7
Msa0678490	AT4G18990.2	52.459	61	27	1	96	154	40	100	5.82e-17	75.9
Msa0678490	AT3G48580.2	38.947	95	57	1	41	135	49	142	1.69e-16	74.3

Find 34 sgRNAs with CRISPR-Local

Find 100 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AGTTATCAAGTTTGAGTTTA+AGG	0.041776	4_4:-34361785	None:intergenic
CTGAACCTCTTTGGCTTGTT+GGG	0.226860	4_4:-34361577	None:intergenic
CCCAAACATATACTTGCTTT+TGG	0.249364	4_4:-34362101	None:intergenic
ACATTTGTTTGCACAGAATA+AGG	0.263774	4_4:-34363118	None:intergenic
GATCTCCTTCATTGAGAAAA+TGG	0.276404	4_4:-34361761	None:intergenic
TCCAAAAGCAAGTATATGTT+TGG	0.311980	4_4:+34362100	Msa0678490:CDS
ATGATGTGTCTATTGAATTA+TGG	0.335350	4_4:+34361490	Msa0678490:five_prime_UTR
TTTGAGACACTGAACCTCTT+TGG	0.340400	4_4:-34361586	None:intergenic
ACTGAACCTCTTTGGCTTGT+TGG	0.341838	4_4:-34361578	None:intergenic
CTCAAACTTGATAACTCTTC+TGG	0.342527	4_4:+34361792	Msa0678490:CDS
AAATCAAACTCGTTGTGGTT+TGG	0.361017	4_4:-34363067	None:intergenic
TGAACTCTTTCAACCAAGTT+GGG	0.408515	4_4:+34361731	Msa0678490:CDS
ATGAACTCTTTCAACCAAGT+TGG	0.443895	4_4:+34361730	Msa0678490:CDS
CCAAAAGCAAGTATATGTTT+GGG	0.446940	4_4:+34362101	Msa0678490:CDS
AATGTGTATGTGAATGGAAT+TGG	0.448488	4_4:+34363136	Msa0678490:CDS
ATCCAGCTTAAGCTTGTTGA+AGG	0.448965	4_4:+34362133	Msa0678490:CDS
GTGAGCAAAGACTTAACCTT+TGG	0.449716	4_4:+34363164	Msa0678490:CDS
TTGAAAGAGTTCATCAAACT+TGG	0.455202	4_4:-34361721	None:intergenic
CACCTTCAACAAGCTTAAGC+TGG	0.489730	4_4:-34362135	None:intergenic
CTTGTTGAAGGTGACTCAGC+TGG	0.494006	4_4:+34362145	Msa0678490:CDS
CAAACAAATGTGTATGTGAA+TGG	0.495017	4_4:+34363130	Msa0678490:CDS
AGAGTAAGAGTGAAAATCCT+TGG	0.520212	4_4:-34363197	None:intergenic
TAAGAGTGAAAATCCTTGGT+AGG	0.527500	4_4:-34363193	None:intergenic
ATTCAAAATCAAACTCGTTG+TGG	0.538842	4_4:-34363072	None:intergenic
AAATGGTCAAAAGCCCAACT+TGG	0.561534	4_4:-34361744	None:intergenic
GAGTTCATCAAACTTGGAAG+AGG	0.579984	4_4:-34361715	None:intergenic
AAAGGTTAAGTCTTTGCTCA+CGG	0.581166	4_4:-34363162	None:intergenic
AAGAGTGAAAATCCTTGGTA+GGG	0.591421	4_4:-34363192	None:intergenic
CCTTGGTAGGGTCAAACCAA+AGG	0.593403	4_4:-34363180	None:intergenic
GTGATATAGATGTCATCAGA+GGG	0.614058	4_4:+34363043	Msa0678490:intron
TTCCATCCTGGCATCTGATG+TGG	0.618351	4_4:+34361456	None:intergenic
CCTTTGGTTTGACCCTACCA+AGG	0.640836	4_4:+34363180	Msa0678490:CDS
TGTGATATAGATGTCATCAG+AGG	0.645456	4_4:+34363042	Msa0678490:intron
ATTCAATAGACACATCATCG+AGG	0.777543	4_4:-34361485	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TTTCAATTTAAATTTTTAAG+TGG	-	chr4_4:34361537-34361556	None:intergenic	10.0%
!!!	ACAAAAATATGTTTAAAATA+TGG	-	chr4_4:34361950-34361969	None:intergenic	10.0%
!!	ATTGTTTAATTAATTAACAA+TGG	+	chr4_4:34362050-34362069	Msa0678490:intron	10.0%
!!!	CTTTATACTAAATTAATTTT+TGG	+	chr4_4:34362666-34362685	Msa0678490:intron	10.0%
!!!	CTATGTTTTAAAAGATTTTA+AGG	-	chr4_4:34361874-34361893	None:intergenic	15.0%
!!	TTAAAACATAGAATTTATCA+TGG	+	chr4_4:34361883-34361902	Msa0678490:intron	15.0%
!!!	TTTTTTTTAATCTAATGTGA+AGG	+	chr4_4:34362297-34362316	Msa0678490:intron	15.0%
!!	TTACTAAAGCAAATATTAAT+TGG	-	chr4_4:34362584-34362603	None:intergenic	15.0%
!!	AAAAATGGAATATATTGTAT+TGG	+	chr4_4:34362781-34362800	Msa0678490:intron	15.0%
!!	AAAATGGAATATATTGTATT+GGG	+	chr4_4:34362782-34362801	Msa0678490:intron	15.0%
!!	TATTTAGTGTTATATTGTAT+TGG	+	chr4_4:34362822-34362841	Msa0678490:intron	15.0%
!!	ATTTAGTGTTATATTGTATT+GGG	+	chr4_4:34362823-34362842	Msa0678490:intron	15.0%
!!!	TTTAAATTTTTAAGTGGCTT+GGG	-	chr4_4:34361531-34361550	None:intergenic	20.0%
!!!	ATTTAAATTTTTAAGTGGCT+TGG	-	chr4_4:34361532-34361551	None:intergenic	20.0%
!!!	TATTTTGATCACTTCTAAAA+TGG	+	chr4_4:34361974-34361993	Msa0678490:intron	20.0%
!!!	ATTTTGATCACTTCTAAAAT+GGG	+	chr4_4:34361975-34361994	Msa0678490:intron	20.0%
!!	TTAATTAATTAACAATGGCA+TGG	+	chr4_4:34362055-34362074	Msa0678490:intron	20.0%
!!	TTTCTCAATATACTAAAGAA+TGG	-	chr4_4:34362235-34362254	None:intergenic	20.0%
!!!	GAACTGTATATTATTGATTA+GGG	-	chr4_4:34362464-34362483	None:intergenic	20.0%
!!!	TGAACTGTATATTATTGATT+AGG	-	chr4_4:34362465-34362484	None:intergenic	20.0%
!!!	TAAGAAAAGTGTATAAATGA+AGG	+	chr4_4:34362757-34362776	Msa0678490:intron	20.0%
!!!	AAGAAAAGTGTATAAATGAA+GGG	+	chr4_4:34362758-34362777	Msa0678490:intron	20.0%
!!!	GACACTTTTTTTTAGAAAAT+GGG	+	chr4_4:34362892-34362911	Msa0678490:intron	20.0%
!!!	GAGTTTGATTTTGAATTTTT+AGG	+	chr4_4:34363079-34363098	Msa0678490:CDS	20.0%
!	ATGATGTGTCTATTGAATTA+TGG	+	chr4_4:34361490-34361509	Msa0678490:five_prime_UTR	25.0%
!!!	TCAAAAATGTCTTGGTTTTT+TGG	+	chr4_4:34361654-34361673	Msa0678490:CDS	25.0%
!!	AGTTATCAAGTTTGAGTTTA+AGG	-	chr4_4:34361788-34361807	None:intergenic	25.0%
!	TTAAGGTGTGAAAAATAACT+AGG	-	chr4_4:34361857-34361876	None:intergenic	25.0%
!!	CCATTGATGACAAAATTAAA+GGG	-	chr4_4:34362422-34362441	None:intergenic	25.0%
!!	TCCATTGATGACAAAATTAA+AGG	-	chr4_4:34362423-34362442	None:intergenic	25.0%
!	CTGTCATATAATAATAACTG+TGG	-	chr4_4:34362550-34362569	None:intergenic	25.0%
!	ACTCATACGATTATAAAGTA+GGG	-	chr4_4:34362619-34362638	None:intergenic	25.0%
!	TAAAGTAGGTCAATTATACT+GGG	-	chr4_4:34362722-34362741	None:intergenic	25.0%
!	TGTATAAATGAAGGGAAAAA+TGG	+	chr4_4:34362766-34362785	Msa0678490:intron	25.0%
!!	TTGAAATGAGTCAGTTATTT+TGG	+	chr4_4:34362869-34362888	Msa0678490:intron	25.0%
!!!	TGAAATGAGTCAGTTATTTT+GGG	+	chr4_4:34362870-34362889	Msa0678490:intron	25.0%
!!!	GGACACTTTTTTTTAGAAAA+TGG	+	chr4_4:34362891-34362910	Msa0678490:intron	25.0%
!	TGTATGTGTATGAATTATTG+AGG	+	chr4_4:34362975-34362994	Msa0678490:intron	25.0%
	TCATGTCTTCAAAAATGTCT+TGG	+	chr4_4:34361646-34361665	Msa0678490:exon	30.0%
	TTGAAAGAGTTCATCAAACT+TGG	-	chr4_4:34361724-34361743	None:intergenic	30.0%
!	TTTGACCATTTTCTCAATGA+AGG	+	chr4_4:34361756-34361775	Msa0678490:CDS	30.0%
	AAAATAACTAGGTTTGTGGT+TGG	-	chr4_4:34361846-34361865	None:intergenic	30.0%
	GTGAAAAATAACTAGGTTTG+TGG	-	chr4_4:34361850-34361869	None:intergenic	30.0%
	GAAGAAAAGGTTGAAGAAAA+AGG	-	chr4_4:34361909-34361928	None:intergenic	30.0%
	TCCAAAAGCAAGTATATGTT+TGG	+	chr4_4:34362100-34362119	Msa0678490:CDS	30.0%
	CCAAAAGCAAGTATATGTTT+GGG	+	chr4_4:34362101-34362120	Msa0678490:CDS	30.0%
!!	CCCTTTAATTTTGTCATCAA+TGG	+	chr4_4:34362419-34362438	Msa0678490:intron	30.0%
	GCAAATATTAATTGGACAAG+AGG	-	chr4_4:34362576-34362595	None:intergenic	30.0%
	GACTCATACGATTATAAAGT+AGG	-	chr4_4:34362620-34362639	None:intergenic	30.0%
	CTAAAGTAGGTCAATTATAC+TGG	-	chr4_4:34362723-34362742	None:intergenic	30.0%
	TCTGTGTGAAAAACTAAAGT+AGG	-	chr4_4:34362736-34362755	None:intergenic	30.0%
	ATTCAAAATCAAACTCGTTG+TGG	-	chr4_4:34363075-34363094	None:intergenic	30.0%
	ACATTTGTTTGCACAGAATA+AGG	-	chr4_4:34363121-34363140	None:intergenic	30.0%
	CAAACAAATGTGTATGTGAA+TGG	+	chr4_4:34363130-34363149	Msa0678490:CDS	30.0%
	AATGTGTATGTGAATGGAAT+TGG	+	chr4_4:34363136-34363155	Msa0678490:CDS	30.0%
!	TTCACTCTTACTCTATTTTC+TGG	+	chr4_4:34363206-34363225	Msa0678490:CDS	30.0%
	ATTCAATAGACACATCATCG+AGG	-	chr4_4:34361488-34361507	None:intergenic	35.0%
	ATGAACTCTTTCAACCAAGT+TGG	+	chr4_4:34361730-34361749	Msa0678490:CDS	35.0%
	TGAACTCTTTCAACCAAGTT+GGG	+	chr4_4:34361731-34361750	Msa0678490:CDS	35.0%
	GATCTCCTTCATTGAGAAAA+TGG	-	chr4_4:34361764-34361783	None:intergenic	35.0%
!	CTCAAACTTGATAACTCTTC+TGG	+	chr4_4:34361792-34361811	Msa0678490:CDS	35.0%
	ATTAATGCCACGTGAAGAAA+AGG	-	chr4_4:34361922-34361941	None:intergenic	35.0%
!	CCCAAACATATACTTGCTTT+TGG	-	chr4_4:34362104-34362123	None:intergenic	35.0%
!	ATTATTGATTAGGGTCCAAG+AGG	-	chr4_4:34362455-34362474	None:intergenic	35.0%
	AGAAAATGGGTCAGTTATTC+CGG	+	chr4_4:34362905-34362924	Msa0678490:intron	35.0%
	TGTGATATAGATGTCATCAG+AGG	+	chr4_4:34363042-34363061	Msa0678490:intron	35.0%
	GTGATATAGATGTCATCAGA+GGG	+	chr4_4:34363043-34363062	Msa0678490:intron	35.0%
	AAATCAAACTCGTTGTGGTT+TGG	-	chr4_4:34363070-34363089	None:intergenic	35.0%
!!	GAATTTTTAGGCAACACAAC+AGG	+	chr4_4:34363091-34363110	Msa0678490:CDS	35.0%
	AAAGGTTAAGTCTTTGCTCA+CGG	-	chr4_4:34363165-34363184	None:intergenic	35.0%
	AAGAGTGAAAATCCTTGGTA+GGG	-	chr4_4:34363195-34363214	None:intergenic	35.0%
	TAAGAGTGAAAATCCTTGGT+AGG	-	chr4_4:34363196-34363215	None:intergenic	35.0%
	AGAGTAAGAGTGAAAATCCT+TGG	-	chr4_4:34363200-34363219	None:intergenic	35.0%
!!!	GGCTTGTTGGGTTTTTATAG+TGG	-	chr4_4:34361568-34361587	None:intergenic	40.0%
	AAAAACCCAACAAGCCAAAG+AGG	+	chr4_4:34361572-34361591	Msa0678490:five_prime_UTR	40.0%
!	TTTGAGACACTGAACCTCTT+TGG	-	chr4_4:34361589-34361608	None:intergenic	40.0%
	GAGTTCATCAAACTTGGAAG+AGG	-	chr4_4:34361718-34361737	None:intergenic	40.0%
	AAATGGTCAAAAGCCCAACT+TGG	-	chr4_4:34361747-34361766	None:intergenic	40.0%
!	TCTTCAACCTTTTCTTCACG+TGG	+	chr4_4:34361912-34361931	Msa0678490:intron	40.0%
	TAACAATGGCATGGACATTC+AGG	+	chr4_4:34362064-34362083	Msa0678490:intron	40.0%
!!	ATCCAGCTTAAGCTTGTTGA+AGG	+	chr4_4:34362133-34362152	Msa0678490:CDS	40.0%
	GTAGGTCAATTATACTGGGA+CGG	-	chr4_4:34362718-34362737	None:intergenic	40.0%
	GAAAATGGGTCAGTTATTCC+GGG	+	chr4_4:34362906-34362925	Msa0678490:intron	40.0%
	GTGAGCAAAGACTTAACCTT+TGG	+	chr4_4:34363164-34363183	Msa0678490:CDS	40.0%
!!	CTGAACCTCTTTGGCTTGTT+GGG	-	chr4_4:34361580-34361599	None:intergenic	45.0%
!!	ACTGAACCTCTTTGGCTTGT+TGG	-	chr4_4:34361581-34361600	None:intergenic	45.0%
	CACCTTCAACAAGCTTAAGC+TGG	-	chr4_4:34362138-34362157	None:intergenic	45.0%
	AATGGAGATGCTCTACCTCT+TGG	+	chr4_4:34362437-34362456	Msa0678490:intron	45.0%
	GTCAATTATACTGGGACGGA+GGG	-	chr4_4:34362714-34362733	None:intergenic	45.0%
	ACGGAGGGAGTAATATTCTG+TGG	+	chr4_4:34362929-34362948	Msa0678490:intron	45.0%
!!!	AATTTTTTACATTTATATTT+TGG	+	chr4_4:34362498-34362517	Msa0678490:intron	5.0%
	CTTGTTGAAGGTGACTCAGC+TGG	+	chr4_4:34362145-34362164	Msa0678490:CDS	50.0%
	GGTCAATTATACTGGGACGG+AGG	-	chr4_4:34362715-34362734	None:intergenic	50.0%
	ATGGGTCAGTTATTCCGGGA+CGG	+	chr4_4:34362910-34362929	Msa0678490:intron	50.0%
	GAATATTACTCCCTCCGTCC+CGG	-	chr4_4:34362927-34362946	None:intergenic	50.0%
	CCTTGGTAGGGTCAAACCAA+AGG	-	chr4_4:34363183-34363202	None:intergenic	50.0%
!!	CCTTTGGTTTGACCCTACCA+AGG	+	chr4_4:34363180-34363199	Msa0678490:CDS	50.0%
	TGGCATGGACATTCAGGTGC+TGG	+	chr4_4:34362070-34362089	Msa0678490:intron	55.0%
	GTCAGTTATTCCGGGACGGA+GGG	+	chr4_4:34362914-34362933	Msa0678490:intron	55.0%
	GGTCAGTTATTCCGGGACGG+AGG	+	chr4_4:34362913-34362932	Msa0678490:intron	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	34361471	34363249	34361471	ID=Msa0678490;Name=Msa0678490
chr4_4	mRNA	34361471	34363249	34361471	ID=Msa0678490-mRNA-1;Parent=Msa0678490;Name=Msa0678490-mRNA-1;_AED=0.25;_eAED=0.25;_QI=177\|1\|0.66\|1\|1\|1\|3\|0\|154
chr4_4	exon	34361471	34361813	34361471	ID=Msa0678490-mRNA-1:exon:8258;Parent=Msa0678490-mRNA-1
chr4_4	exon	34362086	34362186	34362086	ID=Msa0678490-mRNA-1:exon:8259;Parent=Msa0678490-mRNA-1
chr4_4	exon	34363052	34363249	34363052	ID=Msa0678490-mRNA-1:exon:8260;Parent=Msa0678490-mRNA-1
chr4_4	five_prime_UTR	34361471	34361647	34361471	ID=Msa0678490-mRNA-1:five_prime_utr;Parent=Msa0678490-mRNA-1
chr4_4	CDS	34361648	34361813	34361648	ID=Msa0678490-mRNA-1:cds;Parent=Msa0678490-mRNA-1
chr4_4	CDS	34362086	34362186	34362086	ID=Msa0678490-mRNA-1:cds;Parent=Msa0678490-mRNA-1
chr4_4	CDS	34363052	34363249	34363052	ID=Msa0678490-mRNA-1:cds;Parent=Msa0678490-mRNA-1

Gene Sequence

>Msa0678490

ATGTCTTCAAAAATGTCTTGGTTTTTTGGTTTGTTTGTGTGTCTTATGTTAAGTGTGTCTTTGTCTACCTCTTCCAAGTTTGATGAACTCTTTCAACCAAGTTGGGCTTTTGACCATTTTCTCAATGAAGGAGATCTCCTTAAACTCAAACTTGATAACTCTTCTGGTGCTGGTTTTGTATCCAAAAGCAAGTATATGTTTGGGAGAGTATCTATCCAGCTTAAGCTTGTTGAAGGTGACTCAGCTGGAACTGTTACTGCTTTCTATATGTCATCAGAGGGTCCAAACCACAACGAGTTTGATTTTGAATTTTTAGGCAACACAACAGGTGAACCTTATTCTGTGCAAACAAATGTGTATGTGAATGGAATTGGTAACCGTGAGCAAAGACTTAACCTTTGGTTTGACCCTACCAAGGATTTTCACTCTTACTCTATTTTCTGGAATCAACGTCAAGTTGTGTAA

Protein sequence

>Msa0678490

MSSKMSWFFGLFVCLMLSVSLSTSSKFDELFQPSWAFDHFLNEGDLLKLKLDNSSGAGFVSKSKYMFGRVSIQLKLVEGDSAGTVTAFYMSSEGPNHNEFDFEFLGNTTGEPYSVQTNVYVNGIGNREQRLNLWFDPTKDFHSYSIFWNQRQVV*