Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0640200 | ACJ83285.1 | 97.826 | 138 | 3 | 0 | 90 | 227 | 17 | 154 | 1.78e-92 | 281 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0640200 | sp|A0A067XRK9|XTH6_DIOKA | 79.720 | 143 | 28 | 1 | 85 | 227 | 19 | 160 | 3.21e-81 | 247 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0640200 | B7FF95 | 97.826 | 138 | 3 | 0 | 90 | 227 | 17 | 154 | 8.49e-93 | 281 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002580 | Msa0640200 | 0.802736 | 4.870596e-49 | -8.615850e-47 |
| Msa0005890 | Msa0640200 | 0.834387 | 3.086117e-56 | -8.615850e-47 |
| Msa0018160 | Msa0640200 | 0.832224 | 1.068129e-55 | -8.615850e-47 |
| Msa0019900 | Msa0640200 | 0.803616 | 3.202229e-49 | -8.615850e-47 |
| Msa0025160 | Msa0640200 | 0.810696 | 1.013856e-50 | -8.615850e-47 |
| Msa0025580 | Msa0640200 | 0.808528 | 2.962886e-50 | -8.615850e-47 |
| Msa0029970 | Msa0640200 | 0.806660 | 7.384098e-50 | -8.615850e-47 |
| Msa0032460 | Msa0640200 | 0.801407 | 9.138121e-49 | -8.615850e-47 |
| Msa0036870 | Msa0640200 | 0.804224 | 2.393970e-49 | -8.615850e-47 |
| Msa0050660 | Msa0640200 | 0.810868 | 9.306992e-51 | -8.615850e-47 |
| Msa0050700 | Msa0640200 | 0.810141 | 1.336194e-50 | -8.615850e-47 |
| Msa0050790 | Msa0640200 | 0.814138 | 1.794315e-51 | -8.615850e-47 |
| Msa0052260 | Msa0640200 | 0.806660 | 7.383749e-50 | -8.615850e-47 |
| Msa0054690 | Msa0640200 | 0.846409 | 2.211656e-59 | -8.615850e-47 |
| Msa0067330 | Msa0640200 | 0.813603 | 2.354992e-51 | -8.615850e-47 |
| Msa0071850 | Msa0640200 | 0.851001 | 1.178992e-60 | -8.615850e-47 |
| Msa0071860 | Msa0640200 | 0.857949 | 1.152028e-62 | -8.615850e-47 |
| Msa0071880 | Msa0640200 | 0.808818 | 2.569157e-50 | -8.615850e-47 |
| Msa0073120 | Msa0640200 | 0.809650 | 1.704163e-50 | -8.615850e-47 |
| Msa0090400 | Msa0640200 | 0.810308 | 1.229441e-50 | -8.615850e-47 |
| Msa0097260 | Msa0640200 | 0.804010 | 2.651569e-49 | -8.615850e-47 |
| Msa0108880 | Msa0640200 | 0.807788 | 4.259467e-50 | -8.615850e-47 |
| Msa0616210 | Msa0640200 | 0.810938 | 8.986130e-51 | -8.615850e-47 |
| Msa0640200 | Msa0644410 | 0.801989 | 6.940709e-49 | -8.615850e-47 |
| Msa0640200 | Msa0658640 | 0.818348 | 2.054829e-52 | -8.615850e-47 |
| Msa0640200 | Msa0661150 | 0.855423 | 6.374374e-62 | -8.615850e-47 |
| Msa0640200 | Msa0666700 | 0.806784 | 6.952926e-50 | -8.615850e-47 |
| Msa0640200 | Msa0675330 | 0.856246 | 3.662813e-62 | -8.615850e-47 |
| Msa0640200 | Msa0678490 | 0.970949 | 2.117493e-132 | -8.615850e-47 |
| Msa0640200 | Msa0699540 | 0.810577 | 1.075704e-50 | -8.615850e-47 |
| Msa0640200 | Msa0700460 | 0.837055 | 6.515189e-57 | -8.615850e-47 |
| Msa0640200 | Msa0703600 | 0.811957 | 5.398768e-51 | -8.615850e-47 |
| Msa0640200 | Msa0709200 | 0.810004 | 1.429578e-50 | -8.615850e-47 |
| Msa0640200 | Msa0735780 | 0.817116 | 3.896063e-52 | -8.615850e-47 |
| Msa0640200 | Msa0738700 | 0.814122 | 1.809293e-51 | -8.615850e-47 |
| Msa0640200 | Msa0795870 | 0.823995 | 1.025572e-53 | -8.615850e-47 |
| Msa0640200 | Msa0819170 | 0.823694 | 1.206946e-53 | -8.615850e-47 |
| Msa0640200 | Msa0833650 | 0.829239 | 5.754212e-55 | -8.615850e-47 |
| Msa0640200 | Msa0859290 | 0.824515 | 7.741135e-54 | -8.615850e-47 |
| Msa0640200 | Msa0894790 | 0.810085 | 1.373288e-50 | -8.615850e-47 |
| Msa0640200 | Msa0974520 | 0.805701 | 1.175705e-49 | -8.615850e-47 |
| Msa0640200 | Msa1028100 | 0.800062 | 1.718565e-48 | -8.615850e-47 |
| Msa0640200 | Msa1042160 | 0.847534 | 1.088455e-59 | -8.615850e-47 |
| Msa0640200 | Msa1042190 | 0.851463 | 8.729360e-61 | -8.615850e-47 |
| Msa0640200 | Msa1044680 | 0.801043 | 1.084506e-48 | -8.615850e-47 |
| Msa0640200 | Msa1080000 | 0.823308 | 1.485077e-53 | -8.615850e-47 |
| Msa0640200 | Msa1081690 | 0.800157 | 1.643834e-48 | -8.615850e-47 |
| Msa0640200 | Msa1105780 | 0.803327 | 3.675266e-49 | -8.615850e-47 |
| Msa0640200 | Msa1132530 | 0.805934 | 1.050381e-49 | -8.615850e-47 |
| Msa0640200 | Msa1132840 | 0.822471 | 2.326993e-53 | -8.615850e-47 |
| Msa0640200 | Msa1167470 | 0.844332 | 8.070624e-59 | -8.615850e-47 |
| Msa0640200 | Msa1204040 | 0.804982 | 1.662864e-49 | -8.615850e-47 |
| Msa0640200 | Msa1226520 | 0.821925 | 3.115659e-53 | -8.615850e-47 |
| Msa0640200 | Msa1240770 | 0.818834 | 1.594216e-52 | -8.615850e-47 |
| Msa0640200 | Msa1265650 | 0.801692 | 7.987477e-49 | -8.615850e-47 |
| Msa0640200 | Msa1268630 | 0.820981 | 5.144980e-53 | -8.615850e-47 |
| Msa0640200 | Msa1277640 | 0.807674 | 4.504321e-50 | -8.615850e-47 |
| Msa0640200 | Msa1303650 | 0.806341 | 8.623190e-50 | -8.615850e-47 |
| Msa0640200 | Msa1315160 | 0.804419 | 2.179993e-49 | -8.615850e-47 |
| Msa0640200 | Msa1316330 | 0.810273 | 1.251340e-50 | -8.615850e-47 |
| Msa0640200 | Msa1321340 | 0.802265 | 6.088957e-49 | -8.615850e-47 |
| Msa0640200 | Msa1343180 | 0.805020 | 1.632596e-49 | -8.615850e-47 |
| Msa0640200 | Msa1359690 | 0.840936 | 6.440291e-58 | -8.615850e-47 |
| Msa0640200 | Msa1384460 | 0.816953 | 4.238668e-52 | -8.615850e-47 |
| Msa0640200 | Msa1409410 | 0.835636 | 1.495425e-56 | -8.615850e-47 |
| Msa0640200 | Msa1415540 | 0.838883 | 2.206933e-57 | -8.615850e-47 |
| Msa0640200 | Msa1437930 | 0.806378 | 8.468366e-50 | -8.615850e-47 |
| Msa0640200 | Msa1440630 | 0.813583 | 2.378120e-51 | -8.615850e-47 |
| Msa0121330 | Msa0640200 | 0.811408 | 7.107988e-51 | -8.615850e-47 |
| Msa0125210 | Msa0640200 | 0.820404 | 6.982651e-53 | -8.615850e-47 |
| Msa0128310 | Msa0640200 | 0.806330 | 8.670386e-50 | -8.615850e-47 |
| Msa0136650 | Msa0640200 | 0.810189 | 1.304701e-50 | -8.615850e-47 |
| Msa0146040 | Msa0640200 | 0.824527 | 7.690316e-54 | -8.615850e-47 |
| Msa0149350 | Msa0640200 | 0.818039 | 2.413137e-52 | -8.615850e-47 |
| Msa0158860 | Msa0640200 | 0.833201 | 6.111508e-56 | -8.615850e-47 |
| Msa0160860 | Msa0640200 | 0.814363 | 1.600251e-51 | -8.615850e-47 |
| Msa0174440 | Msa0640200 | 0.800544 | 1.371547e-48 | -8.615850e-47 |
| Msa0188610 | Msa0640200 | 0.820175 | 7.881054e-53 | -8.615850e-47 |
| Msa0225860 | Msa0640200 | 0.808255 | 3.388433e-50 | -8.615850e-47 |
| Msa0230800 | Msa0640200 | 0.816880 | 4.402632e-52 | -8.615850e-47 |
| Msa0230870 | Msa0640200 | 0.808168 | 3.535293e-50 | -8.615850e-47 |
| Msa0367690 | Msa0640200 | 0.802068 | 6.686879e-49 | -8.615850e-47 |
| Msa0369790 | Msa0640200 | 0.818647 | 1.757142e-52 | -8.615850e-47 |
| Msa0380620 | Msa0640200 | 0.819137 | 1.359980e-52 | -8.615850e-47 |
| Msa0380670 | Msa0640200 | 0.808784 | 2.612934e-50 | -8.615850e-47 |
| Msa0418970 | Msa0640200 | 0.819256 | 1.277450e-52 | -8.615850e-47 |
| Msa0419700 | Msa0640200 | 0.833023 | 6.767377e-56 | -8.615850e-47 |
| Msa0430260 | Msa0640200 | 0.803489 | 3.401387e-49 | -8.615850e-47 |
| Msa0430300 | Msa0640200 | 0.810751 | 9.865740e-51 | -8.615850e-47 |
| Msa0435210 | Msa0640200 | 0.826183 | 3.120636e-54 | -8.615850e-47 |
| Msa0436910 | Msa0640200 | 0.802457 | 5.559923e-49 | -8.615850e-47 |
| Msa0450160 | Msa0640200 | 0.815881 | 7.364022e-52 | -8.615850e-47 |
| Msa0464000 | Msa0640200 | 0.818573 | 1.826684e-52 | -8.615850e-47 |
| Msa0479320 | Msa0640200 | 0.812352 | 4.426187e-51 | -8.615850e-47 |
| Msa0270340 | Msa0640200 | 0.815352 | 9.658980e-52 | -8.615850e-47 |
| Msa0298470 | Msa0640200 | 0.820527 | 6.542784e-53 | -8.615850e-47 |
| Msa0359020 | Msa0640200 | 0.804995 | 1.653078e-49 | -8.615850e-47 |
| Msa0509550 | Msa0640200 | 0.808957 | 2.399199e-50 | -8.615850e-47 |
| Msa0511750 | Msa0640200 | 0.820458 | 6.786063e-53 | -8.615850e-47 |
| Msa0517250 | Msa0640200 | 0.807700 | 4.447333e-50 | -8.615850e-47 |
| Msa0528570 | Msa0640200 | 0.845705 | 3.436672e-59 | -8.615850e-47 |
| Msa0530780 | Msa0640200 | 0.812414 | 4.291266e-51 | -8.615850e-47 |
| Msa0541300 | Msa0640200 | 0.837913 | 3.925415e-57 | -8.615850e-47 |
| Msa0541310 | Msa0640200 | 0.834984 | 2.185059e-56 | -8.615850e-47 |
| Msa0543660 | Msa0640200 | 0.948868 | 4.010041e-107 | -8.615850e-47 |
| Msa0548470 | Msa0640200 | 0.843470 | 1.373619e-58 | -8.615850e-47 |
| Msa0555860 | Msa0640200 | -0.802981 | 4.334924e-49 | -8.615850e-47 |
| Msa0557460 | Msa0640200 | 0.832332 | 1.003925e-55 | -8.615850e-47 |
| Msa0567170 | Msa0640200 | 0.821841 | 3.257909e-53 | -8.615850e-47 |
| Msa0580370 | Msa0640200 | 0.823819 | 1.127799e-53 | -8.615850e-47 |
| Msa0584420 | Msa0640200 | 0.969627 | 2.115026e-130 | -8.615850e-47 |
| Msa0585020 | Msa0640200 | 0.858805 | 6.400627e-63 | -8.615850e-47 |
| Msa0587620 | Msa0640200 | 0.831884 | 1.296228e-55 | -8.615850e-47 |
| Msa0597270 | Msa0640200 | 0.846426 | 2.188545e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0640200 | MtrunA17_Chr4g0023961 | 97.826 | 138 | 3 | 0 | 90 | 227 | 17 | 154 | 8.59e-96 | 281 |
| Msa0640200 | MtrunA17_Chr2g0323161 | 88.235 | 136 | 16 | 0 | 92 | 227 | 17 | 152 | 5.54e-87 | 259 |
| Msa0640200 | MtrunA17_Chr7g0252621 | 49.673 | 153 | 75 | 1 | 77 | 227 | 9 | 161 | 2.37e-49 | 163 |
| Msa0640200 | MtrunA17_Chr7g0252601 | 56.923 | 130 | 54 | 1 | 100 | 227 | 32 | 161 | 4.10e-49 | 162 |
| Msa0640200 | MtrunA17_Chr3g0122021 | 54.412 | 136 | 58 | 2 | 95 | 227 | 23 | 157 | 4.56e-49 | 162 |
| Msa0640200 | MtrunA17_Chr3g0122031 | 54.412 | 136 | 58 | 2 | 95 | 227 | 23 | 157 | 4.65e-49 | 162 |
| Msa0640200 | MtrunA17_Chr7g0252631 | 56.923 | 130 | 54 | 1 | 100 | 227 | 32 | 161 | 7.32e-49 | 162 |
| Msa0640200 | MtrunA17_Chr4g0054451 | 56.391 | 133 | 55 | 2 | 98 | 227 | 32 | 164 | 7.73e-49 | 161 |
| Msa0640200 | MtrunA17_Chr4g0054431 | 56.391 | 133 | 55 | 2 | 98 | 227 | 30 | 162 | 9.09e-49 | 161 |
| Msa0640200 | MtrunA17_Chr4g0071341 | 53.623 | 138 | 62 | 1 | 92 | 227 | 17 | 154 | 1.25e-48 | 160 |
| Msa0640200 | MtrunA17_Chr8g0389641 | 49.367 | 158 | 72 | 3 | 73 | 227 | 6 | 158 | 1.97e-48 | 159 |
| Msa0640200 | MtrunA17_Chr8g0377841 | 60.360 | 111 | 44 | 0 | 117 | 227 | 50 | 160 | 4.30e-47 | 157 |
| Msa0640200 | MtrunA17_Chr6g0461731 | 55.385 | 130 | 56 | 1 | 100 | 227 | 55 | 184 | 7.08e-47 | 157 |
| Msa0640200 | MtrunA17_Chr6g0461761 | 55.385 | 130 | 56 | 1 | 100 | 227 | 32 | 161 | 1.41e-46 | 155 |
| Msa0640200 | MtrunA17_Chr7g0258911 | 52.899 | 138 | 63 | 1 | 92 | 227 | 16 | 153 | 5.36e-46 | 154 |
| Msa0640200 | MtrunA17_Chr4g0072611 | 52.174 | 138 | 64 | 1 | 92 | 227 | 17 | 154 | 1.23e-45 | 153 |
| Msa0640200 | MtrunA17_Chr1g0206081 | 52.027 | 148 | 65 | 3 | 85 | 227 | 21 | 167 | 1.92e-45 | 153 |
| Msa0640200 | MtrunA17_Chr1g0206681 | 50.725 | 138 | 66 | 1 | 92 | 227 | 26 | 163 | 2.70e-45 | 152 |
| Msa0640200 | MtrunA17_Chr4g0072671 | 52.632 | 133 | 61 | 1 | 97 | 227 | 23 | 155 | 1.23e-44 | 150 |
| Msa0640200 | MtrunA17_Chr2g0299061 | 58.772 | 114 | 47 | 0 | 114 | 227 | 42 | 155 | 2.89e-44 | 150 |
| Msa0640200 | MtrunA17_Chr5g0443391 | 56.757 | 111 | 48 | 0 | 117 | 227 | 47 | 157 | 7.66e-43 | 146 |
| Msa0640200 | MtrunA17_Chr6g0486581 | 48.462 | 130 | 67 | 0 | 98 | 227 | 24 | 153 | 1.09e-41 | 143 |
| Msa0640200 | MtrunA17_Chr3g0096651 | 52.344 | 128 | 59 | 1 | 100 | 227 | 34 | 159 | 3.54e-41 | 142 |
| Msa0640200 | MtrunA17_Chr4g0072601 | 56.140 | 114 | 50 | 0 | 114 | 227 | 44 | 157 | 4.96e-41 | 141 |
| Msa0640200 | MtrunA17_Chr4g0072681 | 60.227 | 88 | 35 | 0 | 140 | 227 | 25 | 112 | 1.21e-35 | 126 |
| Msa0640200 | MtrunA17_Chr8g0340001 | 55.556 | 99 | 44 | 0 | 129 | 227 | 8 | 106 | 6.81e-35 | 124 |
| Msa0640200 | MtrunA17_Chr8g0375981 | 45.652 | 138 | 66 | 5 | 98 | 227 | 29 | 165 | 7.84e-30 | 113 |
| Msa0640200 | MtrunA17_Chr7g0264731 | 40.972 | 144 | 72 | 3 | 97 | 227 | 29 | 172 | 8.08e-29 | 109 |
| Msa0640200 | MtrunA17_Chr1g0161951 | 44.853 | 136 | 66 | 5 | 100 | 227 | 33 | 167 | 1.72e-28 | 109 |
| Msa0640200 | MtrunA17_Chr2g0303861 | 39.695 | 131 | 76 | 2 | 100 | 227 | 29 | 159 | 6.97e-28 | 107 |
| Msa0640200 | MtrunA17_Chr4g0028221 | 38.415 | 164 | 92 | 4 | 73 | 227 | 22 | 185 | 1.41e-27 | 106 |
| Msa0640200 | MtrunA17_Chr1g0180451 | 45.536 | 112 | 53 | 2 | 124 | 227 | 64 | 175 | 1.83e-27 | 106 |
| Msa0640200 | MtrunA17_Chr2g0327411 | 36.111 | 180 | 88 | 4 | 56 | 227 | 29 | 189 | 8.47e-27 | 104 |
| Msa0640200 | MtrunA17_Chr5g0410621 | 45.299 | 117 | 59 | 2 | 116 | 227 | 60 | 176 | 4.46e-26 | 103 |
| Msa0640200 | MtrunA17_Chr7g0235541 | 54.545 | 88 | 34 | 2 | 145 | 227 | 1 | 87 | 1.01e-25 | 99.8 |
| Msa0640200 | MtrunA17_Chr8g0365231 | 44.167 | 120 | 62 | 2 | 113 | 227 | 61 | 180 | 2.91e-25 | 100 |
| Msa0640200 | MtrunA17_Chr8g0382041 | 41.525 | 118 | 63 | 2 | 116 | 227 | 52 | 169 | 2.09e-24 | 99.0 |
| Msa0640200 | MtrunA17_Chr8g0390201 | 58.462 | 65 | 27 | 0 | 163 | 227 | 15 | 79 | 2.49e-23 | 93.6 |
| Msa0640200 | MtrunA17_Chr2g0303721 | 35.714 | 140 | 78 | 4 | 91 | 227 | 22 | 152 | 4.57e-22 | 91.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0640200 | AT4G03210.1 | 77.273 | 132 | 30 | 0 | 96 | 227 | 25 | 156 | 4.73e-74 | 226 |
| Msa0640200 | AT4G03210.2 | 83.673 | 98 | 16 | 0 | 130 | 227 | 31 | 128 | 1.88e-57 | 183 |
| Msa0640200 | AT5G13870.2 | 57.037 | 135 | 56 | 1 | 95 | 227 | 27 | 161 | 8.95e-51 | 167 |
| Msa0640200 | AT5G13870.1 | 57.037 | 135 | 56 | 1 | 95 | 227 | 27 | 161 | 8.95e-51 | 167 |
| Msa0640200 | AT5G13870.3 | 57.037 | 135 | 56 | 1 | 95 | 227 | 27 | 161 | 8.95e-51 | 167 |
| Msa0640200 | AT4G37800.1 | 54.745 | 137 | 59 | 2 | 94 | 227 | 28 | 164 | 9.68e-49 | 162 |
| Msa0640200 | AT3G23730.1 | 48.780 | 164 | 71 | 4 | 67 | 227 | 3 | 156 | 5.48e-48 | 160 |
| Msa0640200 | AT5G65730.1 | 53.383 | 133 | 59 | 2 | 98 | 227 | 33 | 165 | 1.12e-47 | 159 |
| Msa0640200 | AT1G11545.1 | 53.901 | 141 | 60 | 2 | 92 | 227 | 30 | 170 | 2.18e-47 | 159 |
| Msa0640200 | AT4G14130.1 | 54.348 | 138 | 58 | 3 | 93 | 227 | 22 | 157 | 3.71e-46 | 155 |
| Msa0640200 | AT5G57550.1 | 53.846 | 130 | 58 | 1 | 100 | 227 | 30 | 159 | 9.46e-46 | 154 |
| Msa0640200 | AT4G30270.1 | 57.018 | 114 | 49 | 0 | 114 | 227 | 40 | 153 | 2.70e-45 | 152 |
| Msa0640200 | AT4G25810.1 | 50.000 | 136 | 66 | 1 | 94 | 227 | 20 | 155 | 4.99e-45 | 152 |
| Msa0640200 | AT5G57560.1 | 49.275 | 138 | 68 | 1 | 92 | 227 | 15 | 152 | 1.11e-44 | 151 |
| Msa0640200 | AT2G06850.1 | 54.615 | 130 | 57 | 1 | 100 | 227 | 35 | 164 | 3.50e-44 | 150 |
| Msa0640200 | AT2G14620.1 | 50.000 | 138 | 67 | 1 | 92 | 227 | 29 | 166 | 2.51e-43 | 148 |
| Msa0640200 | AT2G18800.1 | 57.759 | 116 | 49 | 0 | 112 | 227 | 42 | 157 | 6.91e-43 | 147 |
| Msa0640200 | AT5G57530.1 | 48.529 | 136 | 67 | 2 | 94 | 227 | 22 | 156 | 4.81e-42 | 144 |
| Msa0640200 | AT4G28850.1 | 50.000 | 130 | 65 | 0 | 98 | 227 | 27 | 156 | 5.47e-42 | 144 |
| Msa0640200 | AT4G25820.1 | 47.826 | 138 | 70 | 1 | 92 | 227 | 22 | 159 | 2.17e-41 | 142 |
| Msa0640200 | AT5G57540.1 | 52.586 | 116 | 55 | 0 | 112 | 227 | 40 | 155 | 3.15e-41 | 142 |
| Msa0640200 | AT5G48070.1 | 54.955 | 111 | 50 | 0 | 117 | 227 | 49 | 159 | 3.88e-41 | 142 |
| Msa0640200 | AT2G14620.2 | 57.576 | 99 | 42 | 0 | 129 | 227 | 18 | 116 | 5.68e-39 | 135 |
| Msa0640200 | AT4G13090.1 | 50.769 | 130 | 62 | 1 | 100 | 227 | 32 | 161 | 1.38e-38 | 135 |
| Msa0640200 | AT4G13080.1 | 50.769 | 130 | 61 | 2 | 100 | 227 | 39 | 167 | 2.44e-38 | 135 |
| Msa0640200 | AT2G06850.2 | 58.416 | 101 | 42 | 0 | 127 | 227 | 4 | 104 | 5.32e-38 | 132 |
| Msa0640200 | AT2G14620.3 | 58.889 | 90 | 37 | 0 | 138 | 227 | 16 | 105 | 8.01e-37 | 129 |
| Msa0640200 | AT3G25050.1 | 46.154 | 130 | 68 | 1 | 100 | 227 | 35 | 164 | 8.02e-37 | 130 |
| Msa0640200 | AT1G65310.1 | 51.515 | 99 | 48 | 0 | 129 | 227 | 61 | 159 | 1.00e-34 | 125 |
| Msa0640200 | AT4G30290.1 | 51.515 | 99 | 48 | 0 | 129 | 227 | 56 | 154 | 1.08e-34 | 125 |
| Msa0640200 | AT1G65310.2 | 51.515 | 99 | 48 | 0 | 129 | 227 | 83 | 181 | 1.18e-34 | 125 |
| Msa0640200 | AT4G30280.1 | 51.515 | 99 | 48 | 0 | 129 | 227 | 61 | 159 | 2.80e-34 | 124 |
| Msa0640200 | AT3G44990.1 | 45.638 | 149 | 68 | 4 | 87 | 227 | 31 | 174 | 7.77e-33 | 120 |
| Msa0640200 | AT2G36870.2 | 40.268 | 149 | 76 | 3 | 87 | 227 | 35 | 178 | 1.57e-29 | 108 |
| Msa0640200 | AT2G01850.1 | 47.934 | 121 | 57 | 3 | 113 | 227 | 45 | 165 | 2.40e-29 | 112 |
| Msa0640200 | AT2G36870.1 | 40.268 | 149 | 76 | 3 | 87 | 227 | 35 | 178 | 3.90e-29 | 111 |
| Msa0640200 | AT1G14720.1 | 47.863 | 117 | 56 | 2 | 116 | 227 | 49 | 165 | 8.41e-29 | 110 |
| Msa0640200 | AT1G10550.1 | 46.552 | 116 | 57 | 2 | 117 | 227 | 60 | 175 | 2.28e-27 | 106 |
| Msa0640200 | AT3G48580.1 | 45.370 | 108 | 58 | 1 | 120 | 227 | 55 | 161 | 1.51e-26 | 103 |
| Msa0640200 | AT4G18990.1 | 43.411 | 129 | 60 | 3 | 112 | 227 | 46 | 174 | 5.82e-26 | 103 |
| Msa0640200 | AT1G32170.1 | 40.541 | 148 | 80 | 4 | 87 | 227 | 20 | 166 | 2.64e-25 | 101 |
| Msa0640200 | AT3G48580.3 | 44.000 | 100 | 55 | 1 | 128 | 227 | 4 | 102 | 7.41e-24 | 95.5 |
| Msa0640200 | AT4G18990.2 | 52.459 | 61 | 27 | 1 | 169 | 227 | 40 | 100 | 6.11e-16 | 75.5 |
| Msa0640200 | AT3G48580.2 | 40.449 | 89 | 52 | 1 | 120 | 208 | 55 | 142 | 1.88e-15 | 73.6 |
Find 70 sgRNAs with CRISPR-Local
Find 199 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTTATCAAGTTTGAGTTTA+AGG | 0.041776 | 4_3:+38103972 | None:intergenic |
| CCCAAACATATACTTGCTTT+TGG | 0.249364 | 4_3:+38103755 | None:intergenic |
| ACATTTGTTTGCACAGAATA+AGG | 0.263774 | 4_3:+38102970 | None:intergenic |
| TCCAAAAGCAAGTATATGTT+TGG | 0.311980 | 4_3:-38103756 | Msa0640200:CDS |
| CTCAAACTTGATAACTCTTC+TGG | 0.342527 | 4_3:-38103965 | Msa0640200:intron |
| GATCTCCTTCATGGAGAAAA+TGG | 0.350214 | 4_3:+38103996 | None:intergenic |
| AAATCAAACTCGTTGTGGTT+TGG | 0.361017 | 4_3:+38103021 | None:intergenic |
| GTTTAAGGAGATCTCCTTCA+TGG | 0.368795 | 4_3:+38103987 | None:intergenic |
| ACAGATCATTTGACGCTAGA+AGG | 0.416865 | 4_3:+38105578 | None:intergenic |
| AACGGTGGCGGGAGGTGCTC+CGG | 0.423942 | 4_3:-38105533 | Msa0640200:intron |
| ATGATATGCAGCGCCTCATC+AGG | 0.428354 | 4_3:-38105329 | Msa0640200:intron |
| CTGATGGAGGCAACGGTGGC+GGG | 0.431264 | 4_3:-38105544 | Msa0640200:CDS |
| CCAAAAGCAAGTATATGTTT+GGG | 0.446940 | 4_3:-38103755 | Msa0640200:CDS |
| AATGTGTATGTGAATGGAAT+TGG | 0.448488 | 4_3:-38102952 | Msa0640200:CDS |
| ATCCAGCTTAAGCTTGTTGA+AGG | 0.448965 | 4_3:-38103723 | Msa0640200:CDS |
| GTGAGCAAAGACTTAACCTT+TGG | 0.449716 | 4_3:-38102924 | Msa0640200:CDS |
| CCGCCACCGTTGCCTCCATC+AGG | 0.456333 | 4_3:+38105545 | None:intergenic |
| CCTGATGGAGGCAACGGTGG+CGG | 0.465141 | 4_3:-38105545 | Msa0640200:CDS |
| TGTGTAACTGAAAACGTTTA+CGG | 0.474097 | 4_3:-38105673 | Msa0640200:CDS |
| ACAGAAAACGGTTACGGTGG+TGG | 0.476431 | 4_3:-38105636 | Msa0640200:CDS |
| GCCGTTGGAGGTCACATGTA+TGG | 0.488371 | 4_3:-38105304 | Msa0640200:CDS |
| CACCTTCAACAAGCTTAAGC+TGG | 0.489730 | 4_3:+38103721 | None:intergenic |
| CTTGTTGAAGGTGACTCAGC+TGG | 0.494006 | 4_3:-38103711 | Msa0640200:CDS |
| CAAACAAATGTGTATGTGAA+TGG | 0.495017 | 4_3:-38102958 | Msa0640200:CDS |
| CCTCCAACGGCCTCCTGATG+AGG | 0.496140 | 4_3:+38105316 | None:intergenic |
| CTAGCGTCAAATGATCTGTC+TGG | 0.497618 | 4_3:-38105574 | Msa0640200:CDS |
| ACTATCAACCGTTACGGTGC+AGG | 0.514798 | 4_3:-38105698 | Msa0640200:CDS |
| CCTCATCAGGAGGCCGTTGG+AGG | 0.519576 | 4_3:-38105316 | Msa0640200:CDS |
| AGAGTAAGAGTGAAAATCCT+TGG | 0.520212 | 4_3:+38102891 | None:intergenic |
| AACAGTGCACCCTACCCTAC+TGG | 0.520698 | 4_3:+38105257 | None:intergenic |
| TAAGAGTGAAAATCCTTGGT+AGG | 0.527500 | 4_3:+38102895 | None:intergenic |
| ACTGAAAACGTTTACGGTGG+AGG | 0.527905 | 4_3:-38105667 | Msa0640200:CDS |
| GAGGGGCACGTAACAGAAAA+CGG | 0.528221 | 4_3:-38105648 | Msa0640200:CDS |
| ATGGAGGCAACGGTGGCGGG+AGG | 0.533490 | 4_3:-38105541 | Msa0640200:CDS |
| CTGAAAACGTTTACGGTGGA+GGG | 0.535852 | 4_3:-38105666 | Msa0640200:CDS |
| GCGCCTCATCAGGAGGCCGT+TGG | 0.537723 | 4_3:-38105319 | Msa0640200:CDS |
| ATTCAAAATCAAACTCGTTG+TGG | 0.538842 | 4_3:+38103016 | None:intergenic |
| ATCATTTGACGCTAGAAGGA+GGG | 0.539938 | 4_3:+38105582 | None:intergenic |
| GAGGCATACTCCAGTAGGGT+AGG | 0.543987 | 4_3:-38105267 | Msa0640200:CDS |
| TCTGTCTGGTGATGACCTGA+TGG | 0.554898 | 4_3:-38105560 | Msa0640200:CDS |
| ATGTATGGTGTCTGATGCAC+GGG | 0.561024 | 4_3:-38105289 | Msa0640200:CDS |
| AAATGGTCAAAAGCCCAACT+TGG | 0.561534 | 4_3:+38104013 | None:intergenic |
| AGGCATACTCCAGTAGGGTA+GGG | 0.574352 | 4_3:-38105266 | Msa0640200:intron |
| AAGTTCATCAAACTTGGAAG+AGG | 0.579984 | 4_3:+38104042 | None:intergenic |
| AAAGGTTAAGTCTTTGCTCA+CGG | 0.581166 | 4_3:+38102926 | None:intergenic |
| TCATTTGACGCTAGAAGGAG+GGG | 0.585763 | 4_3:+38105583 | None:intergenic |
| TACACATTCCTGCACCGTAA+CGG | 0.588239 | 4_3:+38105690 | None:intergenic |
| AAGAGTGAAAATCCTTGGTA+GGG | 0.591421 | 4_3:+38102896 | None:intergenic |
| CCTTGGTAGGGTCAAACCAA+AGG | 0.593403 | 4_3:+38102908 | None:intergenic |
| ACCATACATGTGACCTCCAA+CGG | 0.597478 | 4_3:+38105303 | None:intergenic |
| CATGTATGGTGTCTGATGCA+CGG | 0.599984 | 4_3:-38105290 | Msa0640200:CDS |
| GATCATTTGACGCTAGAAGG+AGG | 0.610506 | 4_3:+38105581 | None:intergenic |
| CACGTAACAGAAAACGGTTA+CGG | 0.613311 | 4_3:-38105642 | Msa0640200:CDS |
| CACGGGAGGCATACTCCAGT+AGG | 0.613559 | 4_3:-38105272 | Msa0640200:CDS |
| GTGATATAGATGTCATCAGA+GGG | 0.614058 | 4_3:-38103045 | Msa0640200:intron |
| AAAACGGTTACGGTGGTGGA+TGG | 0.620934 | 4_3:-38105632 | Msa0640200:CDS |
| ATATGCAGCGCCTCATCAGG+AGG | 0.626175 | 4_3:-38105326 | Msa0640200:intron |
| GCAGTCACTATCAACCGTTA+CGG | 0.627261 | 4_3:-38105704 | Msa0640200:CDS |
| TGAAAACGTTTACGGTGGAG+GGG | 0.629145 | 4_3:-38105665 | Msa0640200:CDS |
| CCTTTGGTTTGACCCTACCA+AGG | 0.640836 | 4_3:-38102908 | Msa0640200:CDS |
| TGTGATATAGATGTCATCAG+AGG | 0.645456 | 4_3:-38103046 | Msa0640200:intron |
| GGTGGATGGTTAGACTGTGG+TGG | 0.647263 | 4_3:-38105618 | Msa0640200:CDS |
| TGACCTGATGGAGGCAACGG+TGG | 0.652993 | 4_3:-38105548 | Msa0640200:CDS |
| TATGGTGTCTGATGCACGGG+AGG | 0.667599 | 4_3:-38105286 | Msa0640200:CDS |
| TGATGACCTGATGGAGGCAA+CGG | 0.670823 | 4_3:-38105551 | Msa0640200:CDS |
| ACGGGAGGCATACTCCAGTA+GGG | 0.677587 | 4_3:-38105271 | Msa0640200:CDS |
| GTCTGGTGATGACCTGATGG+AGG | 0.699268 | 4_3:-38105557 | Msa0640200:CDS |
| GTAACAGAAAACGGTTACGG+TGG | 0.703230 | 4_3:-38105639 | Msa0640200:CDS |
| GTAACTGAAAACGTTTACGG+TGG | 0.738429 | 4_3:-38105670 | Msa0640200:CDS |
| GGTGGTGGATGGTTAGACTG+TGG | 0.756883 | 4_3:-38105621 | Msa0640200:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTCAATTTAAATTTTTAAG+TGG | + | chr4_3:38104352-38104371 | None:intergenic | 10.0% |
| !!! | ACAAAAATATGTTTAAAATA+TGG | + | chr4_3:38104741-38104760 | None:intergenic | 10.0% |
| !!! | ATATTTTGATTAAATAACAA+TGG | - | chr4_3:38104764-38104783 | Msa0640200:intron | 10.0% |
| !!! | CTTTATACTAAATTAATTTT+TGG | - | chr4_3:38105380-38105399 | Msa0640200:intron | 10.0% |
| !! | AAACAAATAAAATGATATGT+GGG | + | chr4_3:38103806-38103825 | None:intergenic | 15.0% |
| !! | AAAACAAATAAAATGATATG+TGG | + | chr4_3:38103807-38103826 | None:intergenic | 15.0% |
| !! | TGTTAATTAGAAGTTATAAA+TGG | + | chr4_3:38104051-38104070 | None:intergenic | 15.0% |
| !!! | TATTTTTTAATCTAATGTGA+AGG | - | chr4_3:38105012-38105031 | Msa0640200:intron | 15.0% |
| !! | TTACTAAAGCAAATATTAAT+TGG | + | chr4_3:38105298-38105317 | None:intergenic | 15.0% |
| !! | ACAAATCATATTCTTATATG+TGG | - | chr4_3:38103427-38103446 | Msa0640200:intron | 20.0% |
| !!! | AAGGTATTTTTGTTAGTTTA+GGG | + | chr4_3:38103702-38103721 | None:intergenic | 20.0% |
| !!! | TAAGGTATTTTTGTTAGTTT+AGG | + | chr4_3:38103703-38103722 | None:intergenic | 20.0% |
| !!! | TTAATTGTTGTTCTTATCTA+CGG | + | chr4_3:38103909-38103928 | None:intergenic | 20.0% |
| !!! | TTTGTTTTGAGTATTTTCTT+CGG | - | chr4_3:38103958-38103977 | Msa0640200:intron | 20.0% |
| !!! | TTTAAATTTTTAAGTGGCTT+GGG | + | chr4_3:38104346-38104365 | None:intergenic | 20.0% |
| !!! | ATTTAAATTTTTAAGTGGCT+TGG | + | chr4_3:38104347-38104366 | None:intergenic | 20.0% |
| !! | TTTCTCAATATACTAAAGAA+TGG | + | chr4_3:38104949-38104968 | None:intergenic | 20.0% |
| !!! | GAACTGTATATTATTGATTA+GGG | + | chr4_3:38105178-38105197 | None:intergenic | 20.0% |
| !!! | TGAACTGTATATTATTGATT+AGG | + | chr4_3:38105179-38105198 | None:intergenic | 20.0% |
| !! | TATTCATTCATAATATTCTG+TGG | - | chr4_3:38105411-38105430 | Msa0640200:intron | 20.0% |
| !!! | GAGTTTGATTTTGAATTTTT+AGG | - | chr4_3:38105561-38105580 | Msa0640200:CDS | 20.0% |
| ! | GAAAAATGAATCATACCTTT+GGG | - | chr4_3:38103169-38103188 | Msa0640200:intron | 25.0% |
| ! | AAAAATGAATCATACCTTTG+GGG | - | chr4_3:38103170-38103189 | Msa0640200:intron | 25.0% |
| !! | TAAGAATATGATTTGTGTTC+AGG | + | chr4_3:38103423-38103442 | None:intergenic | 25.0% |
| ! | AACATGTTTAAGTATGTGTT+TGG | - | chr4_3:38103517-38103536 | Msa0640200:intron | 25.0% |
| ! | TATTGAGAAACATGTAAATG+TGG | + | chr4_3:38103564-38103583 | None:intergenic | 25.0% |
| !! | AGTAATTTTCTTTGGATATG+TGG | + | chr4_3:38103649-38103668 | None:intergenic | 25.0% |
| ! | TCCAAAGAAAATTACTCTTT+AGG | - | chr4_3:38103653-38103672 | Msa0640200:intron | 25.0% |
| ! | TGATAGTTAACAGTTGTTTA+AGG | + | chr4_3:38103721-38103740 | None:intergenic | 25.0% |
| ! | AACTGTTAACTATCATTCAT+TGG | - | chr4_3:38103726-38103745 | Msa0640200:CDS | 25.0% |
| !!! | TTTTATTTGTTTTCTACCGT+AGG | - | chr4_3:38103814-38103833 | Msa0640200:intron | 25.0% |
| !! | AAATGGATTTATTGCTTGTT+TGG | + | chr4_3:38104034-38104053 | None:intergenic | 25.0% |
| !! | ATAATCCAATAAAAGTGCAA+TGG | - | chr4_3:38104141-38104160 | Msa0640200:intron | 25.0% |
| !! | TAATCCAATAAAAGTGCAAT+GGG | - | chr4_3:38104142-38104161 | Msa0640200:intron | 25.0% |
| ! | ATGATGTGTCTATTGAATTA+TGG | - | chr4_3:38104305-38104324 | Msa0640200:intron | 25.0% |
| ! | AAATGTCTTCAAAAATGTGT+TGG | - | chr4_3:38104459-38104478 | Msa0640200:intron | 25.0% |
| !!! | TCAAAAATGTGTTGGTTTTT+TGG | - | chr4_3:38104467-38104486 | Msa0640200:intron | 25.0% |
| ! | TTGAAAAAGTTCATCAAACT+TGG | + | chr4_3:38104537-38104556 | None:intergenic | 25.0% |
| !! | AGTTATCAAGTTTGAGTTTA+AGG | + | chr4_3:38104601-38104620 | None:intergenic | 25.0% |
| ! | AGAGTTGTGAAAAATAACTA+GGG | + | chr4_3:38104670-38104689 | None:intergenic | 25.0% |
| ! | TAGAGTTGTGAAAAATAACT+AGG | + | chr4_3:38104671-38104690 | None:intergenic | 25.0% |
| !! | TATTTTTCACAACTCTATCA+AGG | - | chr4_3:38104674-38104693 | Msa0640200:intron | 25.0% |
| ! | TTGATTAAATAACAATGGCA+TGG | - | chr4_3:38104769-38104788 | Msa0640200:intron | 25.0% |
| !! | CCATTGATGACAAAATTAAA+GGG | + | chr4_3:38105136-38105155 | None:intergenic | 25.0% |
| !! | TCCATTGATGACAAAATTAA+AGG | + | chr4_3:38105137-38105156 | None:intergenic | 25.0% |
| ! | CTGTCATATAATAATAACTG+TGG | + | chr4_3:38105264-38105283 | None:intergenic | 25.0% |
| ! | ACTCATACGATTATAAAGTA+GGG | + | chr4_3:38105333-38105352 | None:intergenic | 25.0% |
| ! | TGTATGTGTATGAATTATTG+AGG | - | chr4_3:38105457-38105476 | Msa0640200:intron | 25.0% |
| TGTGTAACTGAAAACGTTTA+CGG | - | chr4_3:38102897-38102916 | Msa0640200:CDS | 30.0% | |
| GGAAAAATGAATCATACCTT+TGG | - | chr4_3:38103168-38103187 | Msa0640200:intron | 30.0% | |
| ! | GCCTAAAGAGTAATTTTCTT+TGG | + | chr4_3:38103657-38103676 | None:intergenic | 30.0% |
| !!! | GCTTCATTTGATTGTTTTTG+AGG | + | chr4_3:38104093-38104112 | None:intergenic | 30.0% |
| ! | AATCCAATAAAAGTGCAATG+GGG | - | chr4_3:38104143-38104162 | Msa0640200:intron | 30.0% |
| GGACATTAAGAAAGATATTG+TGG | + | chr4_3:38104234-38104253 | None:intergenic | 30.0% | |
| ! | CTTTCTTAATGTCCTTTTCT+TGG | - | chr4_3:38104240-38104259 | Msa0640200:intron | 30.0% |
| GGAATTCAAATACCAAGAAA+AGG | + | chr4_3:38104255-38104274 | None:intergenic | 30.0% | |
| !!! | ATGAACTTTTTCAACCAAGT+TGG | - | chr4_3:38104543-38104562 | Msa0640200:intron | 30.0% |
| !!! | TGAACTTTTTCAACCAAGTT+GGG | - | chr4_3:38104544-38104563 | Msa0640200:intron | 30.0% |
| ! | TGTTCAACATTTTCTTCACA+TGG | - | chr4_3:38104703-38104722 | Msa0640200:intron | 30.0% |
| TCCAAAAGCAAGTATATGTT+TGG | - | chr4_3:38104814-38104833 | Msa0640200:intron | 30.0% | |
| CCAAAAGCAAGTATATGTTT+GGG | - | chr4_3:38104815-38104834 | Msa0640200:intron | 30.0% | |
| !! | CCCTTTAATTTTGTCATCAA+TGG | - | chr4_3:38105133-38105152 | Msa0640200:intron | 30.0% |
| GCAAATATTAATTGGACAAG+AGG | + | chr4_3:38105290-38105309 | None:intergenic | 30.0% | |
| GACTCATACGATTATAAAGT+AGG | + | chr4_3:38105334-38105353 | None:intergenic | 30.0% | |
| ATTCAAAATCAAACTCGTTG+TGG | + | chr4_3:38105557-38105576 | None:intergenic | 30.0% | |
| ACATTTGTTTGCACAGAATA+AGG | + | chr4_3:38105603-38105622 | None:intergenic | 30.0% | |
| CAAACAAATGTGTATGTGAA+TGG | - | chr4_3:38105612-38105631 | Msa0640200:CDS | 30.0% | |
| AATGTGTATGTGAATGGAAT+TGG | - | chr4_3:38105618-38105637 | Msa0640200:CDS | 30.0% | |
| ! | TTCACTCTTACTCTATTTTC+TGG | - | chr4_3:38105688-38105707 | Msa0640200:CDS | 30.0% |
| ! | ATTGAATGCGTGAAAAGTGT+GGG | - | chr4_3:38103147-38103166 | Msa0640200:intron | 35.0% |
| AAGCTAAGTCACCCTTATAT+AGG | - | chr4_3:38103195-38103214 | Msa0640200:intron | 35.0% | |
| TGTTGCTAGTGTATTCCTTT+AGG | - | chr4_3:38103332-38103351 | Msa0640200:intron | 35.0% | |
| ATGTGGTAGCTTAATGTGAA+CGG | + | chr4_3:38103547-38103566 | None:intergenic | 35.0% | |
| AAACGTGTGGCAACATAATT+TGG | + | chr4_3:38103615-38103634 | None:intergenic | 35.0% | |
| GAACGGTGGTTAACTATTAT+AGG | + | chr4_3:38103778-38103797 | None:intergenic | 35.0% | |
| ! | TGAGTATTTTCTTCGGCTTA+TGG | - | chr4_3:38103965-38103984 | Msa0640200:intron | 35.0% |
| CAAATATCATACTCCTCAAG+TGG | - | chr4_3:38104112-38104131 | Msa0640200:intron | 35.0% | |
| TTGGTATTTGAATTCCATCC+TGG | - | chr4_3:38104259-38104278 | Msa0640200:intron | 35.0% | |
| ATTCAATAGACACATCATCG+AGG | + | chr4_3:38104303-38104322 | None:intergenic | 35.0% | |
| AAGTTCATCAAACTTGGAAG+AGG | + | chr4_3:38104531-38104550 | None:intergenic | 35.0% | |
| ! | TTTGACCATTTTCTCCATGA+AGG | - | chr4_3:38104569-38104588 | Msa0640200:intron | 35.0% |
| ! | CTCAAACTTGATAACTCTTC+TGG | - | chr4_3:38104605-38104624 | Msa0640200:intron | 35.0% |
| AAAATAACTAGGGTTGTGGT+AGG | + | chr4_3:38104660-38104679 | None:intergenic | 35.0% | |
| GTGAAAAATAACTAGGGTTG+TGG | + | chr4_3:38104664-38104683 | None:intergenic | 35.0% | |
| ! | CCCAAACATATACTTGCTTT+TGG | + | chr4_3:38104818-38104837 | None:intergenic | 35.0% |
| ! | ATTATTGATTAGGGTCCAAG+AGG | + | chr4_3:38105169-38105188 | None:intergenic | 35.0% |
| TGTGATATAGATGTCATCAG+AGG | - | chr4_3:38105524-38105543 | Msa0640200:intron | 35.0% | |
| GTGATATAGATGTCATCAGA+GGG | - | chr4_3:38105525-38105544 | Msa0640200:intron | 35.0% | |
| AAATCAAACTCGTTGTGGTT+TGG | + | chr4_3:38105552-38105571 | None:intergenic | 35.0% | |
| !! | GAATTTTTAGGCAACACAAC+AGG | - | chr4_3:38105573-38105592 | Msa0640200:CDS | 35.0% |
| AAAGGTTAAGTCTTTGCTCA+CGG | + | chr4_3:38105647-38105666 | None:intergenic | 35.0% | |
| AAGAGTGAAAATCCTTGGTA+GGG | + | chr4_3:38105677-38105696 | None:intergenic | 35.0% | |
| TAAGAGTGAAAATCCTTGGT+AGG | + | chr4_3:38105678-38105697 | None:intergenic | 35.0% | |
| AGAGTAAGAGTGAAAATCCT+TGG | + | chr4_3:38105682-38105701 | None:intergenic | 35.0% | |
| GTAACTGAAAACGTTTACGG+TGG | - | chr4_3:38102900-38102919 | Msa0640200:CDS | 40.0% | |
| CACGTAACAGAAAACGGTTA+CGG | - | chr4_3:38102928-38102947 | Msa0640200:CDS | 40.0% | |
| ATCATTTGACGCTAGAAGGA+GGG | + | chr4_3:38102991-38103010 | None:intergenic | 40.0% | |
| ACAGATCATTTGACGCTAGA+AGG | + | chr4_3:38102995-38103014 | None:intergenic | 40.0% | |
| GATTGAATGCGTGAAAAGTG+TGG | - | chr4_3:38103146-38103165 | Msa0640200:intron | 40.0% | |
| TCACACACACGCCTATATAA+GGG | + | chr4_3:38103209-38103228 | None:intergenic | 40.0% | |
| TTCACACACACGCCTATATA+AGG | + | chr4_3:38103210-38103229 | None:intergenic | 40.0% | |
| TTTGATCCACATGTCAGTGT+TGG | - | chr4_3:38103379-38103398 | Msa0640200:intron | 40.0% | |
| ATTTGTGTTCAGGATCAGCT+AGG | + | chr4_3:38103413-38103432 | None:intergenic | 40.0% | |
| GCAACATAATTTGGAGAGTC+TGG | + | chr4_3:38103606-38103625 | None:intergenic | 40.0% | |
| GGTCAAAATCTTCAAACGTG+TGG | + | chr4_3:38103628-38103647 | None:intergenic | 40.0% | |
| ATGATATGTGGGTCACTGAA+CGG | + | chr4_3:38103795-38103814 | None:intergenic | 40.0% | |
| CTCTCACATACGATAACCTA+CGG | + | chr4_3:38103833-38103852 | None:intergenic | 40.0% | |
| GCAACAGTTAACTACCATAG+AGG | - | chr4_3:38103852-38103871 | Msa0640200:intron | 40.0% | |
| ! | AACTACCATAGAGGTACATG+TGG | - | chr4_3:38103861-38103880 | Msa0640200:intron | 40.0% |
| ! | ACTACCATAGAGGTACATGT+GGG | - | chr4_3:38103862-38103881 | Msa0640200:intron | 40.0% |
| GGTGCTTGGAAGCAAAATAT+TGG | - | chr4_3:38103986-38104005 | Msa0640200:CDS | 40.0% | |
| ! | GTACCCCATTGCACTTTTAT+TGG | + | chr4_3:38104149-38104168 | None:intergenic | 40.0% |
| CACTCTCTTTCTCTCATTGT+AGG | + | chr4_3:38104171-38104190 | None:intergenic | 40.0% | |
| AGAGAGTGATTGAACAGCTT+TGG | - | chr4_3:38104183-38104202 | Msa0640200:intron | 40.0% | |
| ATAAACCCAACAAGCCAAAG+AGG | - | chr4_3:38104386-38104405 | Msa0640200:intron | 40.0% | |
| ! | TTTGAGACACTGAACCTCTT+TGG | + | chr4_3:38104403-38104422 | None:intergenic | 40.0% |
| AAATGGTCAAAAGCCCAACT+TGG | + | chr4_3:38104560-38104579 | None:intergenic | 40.0% | |
| GATCTCCTTCATGGAGAAAA+TGG | + | chr4_3:38104577-38104596 | None:intergenic | 40.0% | |
| GTTTAAGGAGATCTCCTTCA+TGG | + | chr4_3:38104586-38104605 | None:intergenic | 40.0% | |
| !! | ATCCAGCTTAAGCTTGTTGA+AGG | - | chr4_3:38104847-38104866 | Msa0640200:intron | 40.0% |
| GTGAGCAAAGACTTAACCTT+TGG | - | chr4_3:38105646-38105665 | Msa0640200:CDS | 40.0% | |
| GCAGTCACTATCAACCGTTA+CGG | - | chr4_3:38102866-38102885 | Msa0640200:CDS | 45.0% | |
| TACACATTCCTGCACCGTAA+CGG | + | chr4_3:38102883-38102902 | None:intergenic | 45.0% | |
| ACTGAAAACGTTTACGGTGG+AGG | - | chr4_3:38102903-38102922 | Msa0640200:CDS | 45.0% | |
| CTGAAAACGTTTACGGTGGA+GGG | - | chr4_3:38102904-38102923 | Msa0640200:CDS | 45.0% | |
| TGAAAACGTTTACGGTGGAG+GGG | - | chr4_3:38102905-38102924 | Msa0640200:CDS | 45.0% | |
| GTAACAGAAAACGGTTACGG+TGG | - | chr4_3:38102931-38102950 | Msa0640200:CDS | 45.0% | |
| TCATTTGACGCTAGAAGGAG+GGG | + | chr4_3:38102990-38103009 | None:intergenic | 45.0% | |
| GATCATTTGACGCTAGAAGG+AGG | + | chr4_3:38102992-38103011 | None:intergenic | 45.0% | |
| CTAGCGTCAAATGATCTGTC+TGG | - | chr4_3:38102996-38103015 | Msa0640200:CDS | 45.0% | |
| TCCAACGCTGAAGTCAGTAT+GGG | - | chr4_3:38103117-38103136 | Msa0640200:intron | 45.0% | |
| ACCATACATGTGACCTCCAA+CGG | + | chr4_3:38103270-38103289 | None:intergenic | 45.0% | |
| CATGTATGGTGTCTGATGCA+CGG | - | chr4_3:38103280-38103299 | Msa0640200:intron | 45.0% | |
| ATGTATGGTGTCTGATGCAC+GGG | - | chr4_3:38103281-38103300 | Msa0640200:intron | 45.0% | |
| TTCCTTTAGGCTATGCACCT+TGG | - | chr4_3:38103345-38103364 | Msa0640200:intron | 45.0% | |
| ATCAAACGTCCATCAGACCA+AGG | + | chr4_3:38103365-38103384 | None:intergenic | 45.0% | |
| GTCAATCCAACACTGACATG+TGG | + | chr4_3:38103388-38103407 | None:intergenic | 45.0% | |
| TTTCTTCGGCTTATGGTGCT+TGG | - | chr4_3:38103972-38103991 | Msa0640200:CDS | 45.0% | |
| GGATTATGAGTGACCACTTG+AGG | + | chr4_3:38104128-38104147 | None:intergenic | 45.0% | |
| GAAAGATATTGTGGTGCGCA+TGG | + | chr4_3:38104225-38104244 | None:intergenic | 45.0% | |
| !! | CTGAACCTCTTTGGCTTGTT+GGG | + | chr4_3:38104394-38104413 | None:intergenic | 45.0% |
| !! | ACTGAACCTCTTTGGCTTGT+TGG | + | chr4_3:38104395-38104414 | None:intergenic | 45.0% |
| TAACAATGGCATGGACCTTC+AGG | - | chr4_3:38104778-38104797 | Msa0640200:intron | 45.0% | |
| GATACAAAACCAGCACCTGA+AGG | + | chr4_3:38104796-38104815 | None:intergenic | 45.0% | |
| CACCTTCAACAAGCTTAAGC+TGG | + | chr4_3:38104852-38104871 | None:intergenic | 45.0% | |
| AATGGAGATGCTCTACCTCT+TGG | - | chr4_3:38105151-38105170 | Msa0640200:intron | 45.0% | |
| !!! | AATTTTTTACATTTATATTT+TGG | - | chr4_3:38105212-38105231 | Msa0640200:intron | 5.0% |
| ACTATCAACCGTTACGGTGC+AGG | - | chr4_3:38102872-38102891 | Msa0640200:CDS | 50.0% | |
| ! | GAGGGGCACGTAACAGAAAA+CGG | - | chr4_3:38102922-38102941 | Msa0640200:CDS | 50.0% |
| ACAGAAAACGGTTACGGTGG+TGG | - | chr4_3:38102934-38102953 | Msa0640200:CDS | 50.0% | |
| !! | AAAACGGTTACGGTGGTGGA+TGG | - | chr4_3:38102938-38102957 | Msa0640200:CDS | 50.0% |
| ! | TCTGTCTGGTGATGACCTGA+TGG | - | chr4_3:38103010-38103029 | Msa0640200:CDS | 50.0% |
| TGATGACCTGATGGAGGCAA+CGG | - | chr4_3:38103019-38103038 | Msa0640200:CDS | 50.0% | |
| AGTCTTCACGGTGGGATGAA+AGG | - | chr4_3:38103073-38103092 | Msa0640200:intron | 50.0% | |
| ! | GTGGGATGAAAGGTGCATGT+AGG | - | chr4_3:38103083-38103102 | Msa0640200:intron | 50.0% |
| CTCCAACGCTGAAGTCAGTA+TGG | - | chr4_3:38103116-38103135 | Msa0640200:intron | 50.0% | |
| !! | TCCCATACTGACTTCAGCGT+TGG | + | chr4_3:38103121-38103140 | None:intergenic | 50.0% |
| GTGACTTAGCTTCACCCCAA+AGG | + | chr4_3:38103187-38103206 | None:intergenic | 50.0% | |
| !! | TGATGAGGCGCTGCATATCA+TGG | + | chr4_3:38103242-38103261 | None:intergenic | 50.0% |
| ATGATATGCAGCGCCTCATC+AGG | - | chr4_3:38103241-38103260 | Msa0640200:intron | 50.0% | |
| AGGCATACTCCAGTAGGGTA+GGG | - | chr4_3:38103304-38103323 | Msa0640200:intron | 50.0% | |
| GACCAAGGTGCATAGCCTAA+AGG | + | chr4_3:38103350-38103369 | None:intergenic | 50.0% | |
| ATATGTGGGTCACTGAACGG+TGG | + | chr4_3:38103792-38103811 | None:intergenic | 50.0% | |
| GTGACCCACATGTACCTCTA+TGG | + | chr4_3:38103869-38103888 | None:intergenic | 50.0% | |
| GGTACATGTGGGTCACTGAA+CGG | - | chr4_3:38103873-38103892 | Msa0640200:intron | 50.0% | |
| CGCATGGCTATAGTAACAGC+TGG | + | chr4_3:38104209-38104228 | None:intergenic | 50.0% | |
| TTCCATCCTGGCATCTGATG+TGG | - | chr4_3:38104271-38104290 | Msa0640200:intron | 50.0% | |
| CTTGTTGAAGGTGACTCAGC+TGG | - | chr4_3:38104859-38104878 | Msa0640200:intron | 50.0% | |
| CCTTGGTAGGGTCAAACCAA+AGG | + | chr4_3:38105665-38105684 | None:intergenic | 50.0% | |
| !! | CCTTTGGTTTGACCCTACCA+AGG | - | chr4_3:38105662-38105681 | Msa0640200:CDS | 50.0% |
| !! | GGTGGTGGATGGTTAGACTG+TGG | - | chr4_3:38102949-38102968 | Msa0640200:CDS | 55.0% |
| GGTGGATGGTTAGACTGTGG+TGG | - | chr4_3:38102952-38102971 | Msa0640200:CDS | 55.0% | |
| ! | GTCTGGTGATGACCTGATGG+AGG | - | chr4_3:38103013-38103032 | Msa0640200:CDS | 55.0% |
| AAGACTCGTCGCCAACGTAC+CGG | + | chr4_3:38103059-38103078 | None:intergenic | 55.0% | |
| ACGTTGGCGACGAGTCTTCA+CGG | - | chr4_3:38103061-38103080 | Msa0640200:intron | 55.0% | |
| GGCGCTGCATATCATGGAGA+CGG | + | chr4_3:38103236-38103255 | None:intergenic | 55.0% | |
| ATATGCAGCGCCTCATCAGG+AGG | - | chr4_3:38103244-38103263 | Msa0640200:intron | 55.0% | |
| GCCGTTGGAGGTCACATGTA+TGG | - | chr4_3:38103266-38103285 | Msa0640200:intron | 55.0% | |
| TATGGTGTCTGATGCACGGG+AGG | - | chr4_3:38103284-38103303 | Msa0640200:intron | 55.0% | |
| ! | ACGGGAGGCATACTCCAGTA+GGG | - | chr4_3:38103299-38103318 | Msa0640200:intron | 55.0% |
| GAGGCATACTCCAGTAGGGT+AGG | - | chr4_3:38103303-38103322 | Msa0640200:intron | 55.0% | |
| AACAGTGCACCCTACCCTAC+TGG | + | chr4_3:38103316-38103335 | None:intergenic | 55.0% | |
| GGCTATGCACCTTGGTCTGA+TGG | - | chr4_3:38103353-38103372 | Msa0640200:intron | 55.0% | |
| TGCCACATCAGATGCCAGGA+TGG | + | chr4_3:38104276-38104295 | None:intergenic | 55.0% | |
| AGTGTGCCACATCAGATGCC+AGG | + | chr4_3:38104280-38104299 | None:intergenic | 55.0% | |
| TGACCTGATGGAGGCAACGG+TGG | - | chr4_3:38103022-38103041 | Msa0640200:CDS | 60.0% | |
| TTGGCGACGAGTCTTCACGG+TGG | - | chr4_3:38103064-38103083 | Msa0640200:intron | 60.0% | |
| TGGCGACGAGTCTTCACGGT+GGG | - | chr4_3:38103065-38103084 | Msa0640200:intron | 60.0% | |
| ! | CACGGGAGGCATACTCCAGT+AGG | - | chr4_3:38103298-38103317 | Msa0640200:intron | 60.0% |
| TGGCATGGACCTTCAGGTGC+TGG | - | chr4_3:38104784-38104803 | Msa0640200:intron | 60.0% | |
| CCTGATGGAGGCAACGGTGG+CGG | - | chr4_3:38103025-38103044 | Msa0640200:CDS | 65.0% | |
| CTGATGGAGGCAACGGTGGC+GGG | - | chr4_3:38103026-38103045 | Msa0640200:CDS | 65.0% | |
| CCTCCAACGGCCTCCTGATG+AGG | + | chr4_3:38103257-38103276 | None:intergenic | 65.0% | |
| CCTCATCAGGAGGCCGTTGG+AGG | - | chr4_3:38103254-38103273 | Msa0640200:intron | 65.0% | |
| CCGCCACCGTTGCCTCCATC+AGG | + | chr4_3:38103028-38103047 | None:intergenic | 70.0% | |
| !! | ATGGAGGCAACGGTGGCGGG+AGG | - | chr4_3:38103029-38103048 | Msa0640200:CDS | 70.0% |
| !! | AACGGTGGCGGGAGGTGCTC+CGG | - | chr4_3:38103037-38103056 | Msa0640200:CDS | 70.0% |
| !! | CGGGAGGTGCTCCGGTACGT+TGG | - | chr4_3:38103045-38103064 | Msa0640200:intron | 70.0% |
| GCGCCTCATCAGGAGGCCGT+TGG | - | chr4_3:38103251-38103270 | Msa0640200:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 38102861 | 38105731 | 38102861 | ID=Msa0640200;Name=Msa0640200 |
| chr4_3 | mRNA | 38102861 | 38105731 | 38102861 | ID=Msa0640200-mRNA-1;Parent=Msa0640200;Name=Msa0640200-mRNA-1;_AED=0.54;_eAED=0.54;_QI=0|0.5|0.2|0.6|1|1|5|0|227 |
| chr4_3 | exon | 38105534 | 38105731 | 38105534 | ID=Msa0640200-mRNA-1:exon:8670;Parent=Msa0640200-mRNA-1 |
| chr4_3 | exon | 38105267 | 38105340 | 38105267 | ID=Msa0640200-mRNA-1:exon:8669;Parent=Msa0640200-mRNA-1 |
| chr4_3 | exon | 38103966 | 38104078 | 38103966 | ID=Msa0640200-mRNA-1:exon:8668;Parent=Msa0640200-mRNA-1 |
| chr4_3 | exon | 38103692 | 38103792 | 38103692 | ID=Msa0640200-mRNA-1:exon:8667;Parent=Msa0640200-mRNA-1 |
| chr4_3 | exon | 38102861 | 38103058 | 38102861 | ID=Msa0640200-mRNA-1:exon:8666;Parent=Msa0640200-mRNA-1 |
| chr4_3 | CDS | 38105534 | 38105731 | 38105534 | ID=Msa0640200-mRNA-1:cds;Parent=Msa0640200-mRNA-1 |
| chr4_3 | CDS | 38105267 | 38105340 | 38105267 | ID=Msa0640200-mRNA-1:cds;Parent=Msa0640200-mRNA-1 |
| chr4_3 | CDS | 38103966 | 38104078 | 38103966 | ID=Msa0640200-mRNA-1:cds;Parent=Msa0640200-mRNA-1 |
| chr4_3 | CDS | 38103692 | 38103792 | 38103692 | ID=Msa0640200-mRNA-1:cds;Parent=Msa0640200-mRNA-1 |
| chr4_3 | CDS | 38102861 | 38103058 | 38102861 | ID=Msa0640200-mRNA-1:cds;Parent=Msa0640200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
