AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0354540

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0354540 MtrunA17_Chr3g0090131 96.341 492 16 2 1 490 1 492 0.0 975
Msa0354540 MtrunA17_Chr3g0090111 87.373 491 59 3 1 490 1 489 0.0 889
Msa0354540 MtrunA17_Chr4g0043091 52.510 478 213 4 18 482 26 502 0.0 521
Msa0354540 MtrunA17_Chr4g0042171 50.000 478 224 5 19 482 23 499 8.55e-172 493
Msa0354540 MtrunA17_Chr6g0482131 50.939 479 216 6 20 482 36 511 3.40e-170 489
Msa0354540 MtrunA17_Chr6g0482941 50.311 483 204 7 20 481 43 510 9.91e-165 475
Msa0354540 MtrunA17_Chr2g0329191 48.536 478 232 5 18 482 32 508 4.29e-164 474
Msa0354540 MtrunA17_Chr6g0482951 49.896 483 206 7 20 481 43 510 5.02e-164 474
Msa0354540 MtrunA17_Chr2g0329201 48.326 478 234 4 18 482 29 506 3.90e-161 466
Msa0354540 MtrunA17_Chr6g0482071 48.950 476 230 4 20 482 37 512 6.41e-161 466
Msa0354540 MtrunA17_Chr4g0033271 47.689 476 236 4 20 482 35 510 1.17e-160 465
Msa0354540 MtrunA17_Chr6g0482081 49.375 480 225 6 19 482 35 512 1.80e-160 465
Msa0354540 MtrunA17_Chr4g0033311 48.333 480 231 7 18 482 37 514 2.65e-159 462
Msa0354540 MtrunA17_Chr4g0010501 47.314 484 224 7 18 482 22 493 4.02e-159 460
Msa0354540 MtrunA17_Chr4g0033321 49.263 475 228 4 20 481 33 507 4.41e-159 461
Msa0354540 MtrunA17_Chr4g0033201 47.193 481 235 6 18 482 34 511 1.53e-158 459
Msa0354540 MtrunA17_Chr4g0033331 47.708 480 232 6 18 481 37 513 1.70e-158 460
Msa0354540 MtrunA17_Chr3g0087261 46.653 478 242 5 18 484 35 510 1.01e-157 457
Msa0354540 MtrunA17_Chr4g0033401 48.637 477 232 4 18 481 32 508 1.51e-156 455
Msa0354540 MtrunA17_Chr4g0033341 47.689 476 238 5 18 482 67 542 5.13e-156 454
Msa0354540 MtrunA17_Chr3g0087271 46.025 478 245 5 18 484 36 511 1.47e-155 452
Msa0354540 MtrunA17_Chr3g0088441 46.764 479 240 6 18 482 36 513 1.69e-155 452
Msa0354540 MtrunA17_Chr4g0033261 47.458 472 225 6 17 482 38 492 5.97e-155 450
Msa0354540 MtrunA17_Chr2g0317841 46.985 481 239 5 19 486 31 508 9.04e-154 448
Msa0354540 MtrunA17_Chr4g0033231 46.610 472 229 6 17 482 38 492 9.44e-150 436
Msa0354540 MtrunA17_Chr4g0033191 45.679 486 245 6 18 487 41 523 2.68e-149 437
Msa0354540 MtrunA17_Chr2g0317821 46.778 481 240 5 19 486 31 508 8.39e-149 436
Msa0354540 MtrunA17_Chr2g0329321 45.397 478 222 6 18 482 36 487 3.68e-147 430
Msa0354540 MtrunA17_Chr2g0288021 44.800 500 247 7 7 486 22 512 8.58e-147 430
Msa0354540 MtrunA17_Chr4g0074561 45.094 479 233 6 25 481 40 510 1.09e-142 420
Msa0354540 MtrunA17_Chr5g0430451 45.902 488 214 7 18 482 37 497 1.23e-141 416
Msa0354540 MtrunA17_Chr4g0006111 44.215 484 239 7 17 486 62 528 3.67e-141 416
Msa0354540 MtrunA17_Chr2g0288071 46.555 479 228 6 23 481 70 540 2.39e-140 414
Msa0354540 MtrunA17_Chr4g0074551 45.342 483 237 6 19 482 49 523 1.41e-139 413
Msa0354540 MtrunA17_Chr4g0006971 42.947 475 248 7 21 483 28 491 4.26e-134 397
Msa0354540 MtrunA17_Chr4g0006131 43.816 477 238 8 19 482 41 500 5.18e-134 397
Msa0354540 MtrunA17_Chr7g0242681 42.767 477 245 8 20 482 38 500 4.73e-132 392
Msa0354540 MtrunA17_Chr5g0428831 42.767 477 243 10 21 482 28 489 4.23e-129 384
Msa0354540 MtrunA17_Chr7g0242691 41.895 475 253 6 20 482 31 494 6.49e-129 384
Msa0354540 MtrunA17_Chr1g0195611 41.962 479 243 11 21 482 28 488 1.19e-128 383
Msa0354540 MtrunA17_Chr5g0418871 51.506 332 148 4 41 360 4 334 3.39e-113 337
Msa0354540 MtrunA17_Chr7g0234091 41.151 469 255 8 21 481 76 531 3.69e-112 342
Msa0354540 MtrunA17_Chr7g0234111 40.085 469 260 8 21 481 76 531 1.21e-109 335
Msa0354540 MtrunA17_Chr7g0234131 38.806 469 267 7 21 481 76 532 4.27e-106 326
Msa0354540 MtrunA17_Chr1g0195641 43.117 385 197 8 22 393 29 404 1.42e-104 318
Msa0354540 MtrunA17_Chr2g0301231 42.040 402 204 6 93 482 7 391 1.04e-102 313
Msa0354540 MtrunA17_Chr3g0087201 45.482 332 159 6 164 481 19 342 8.69e-95 290
Msa0354540 MtrunA17_Chr7g0230651 37.234 376 220 6 59 428 11 376 1.24e-86 271
Msa0354540 MtrunA17_Chr7g0227561 36.727 275 145 3 12 282 38 287 6.86e-60 199
Msa0354540 MtrunA17_Chr3g0087191 58.219 146 59 2 18 161 20 165 6.34e-55 181
Msa0354540 MtrunA17_Chr7g0236731 41.364 220 124 2 113 327 34 253 6.04e-51 175
Msa0354540 MtrunA17_Chr4g0068871 26.316 418 227 13 83 484 183 535 3.83e-25 108
Msa0354540 MtrunA17_Chr5g0418861 46.667 90 47 1 393 481 1 90 3.47e-24 96.3
Msa0354540 MtrunA17_Chr8g0352881 37.500 88 55 0 234 321 57 144 9.04e-16 74.7
Msa0354540 MtrunA17_Chr8g0352881 58.182 55 23 0 27 81 5 59 1.70e-14 71.2
Msa0354540 MtrunA17_Chr7g0227591 43.103 58 33 0 428 485 12 69 6.74e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0354540 AT5G36890.1 70.551 472 136 3 22 490 18 489 0.0 714
Msa0354540 AT5G36890.2 70.276 471 137 3 22 490 18 487 0.0 710
Msa0354540 AT1G26560.1 51.464 478 217 6 18 481 30 506 9.41e-177 506
Msa0354540 AT3G18080.1 50.210 476 218 7 20 482 39 508 1.19e-165 478
Msa0354540 AT5G54570.1 49.057 477 227 6 20 481 30 505 1.09e-164 476
Msa0354540 AT3G18070.3 48.734 474 220 7 20 482 30 491 9.29e-163 470
Msa0354540 AT3G18070.1 48.945 474 225 7 20 482 30 497 7.97e-162 468
Msa0354540 AT2G44480.1 45.363 496 255 7 5 486 20 513 1.46e-156 455
Msa0354540 AT2G44480.3 45.363 496 255 7 5 486 51 544 2.84e-156 456
Msa0354540 AT3G60140.1 46.598 485 232 8 19 482 25 503 5.21e-155 453
Msa0354540 AT5G44640.1 48.125 480 228 8 19 483 30 503 1.62e-152 444
Msa0354540 AT2G44450.1 47.510 482 233 7 19 486 30 505 7.41e-152 442
Msa0354540 AT5G42260.1 48.945 474 221 8 19 477 30 497 1.15e-150 440
Msa0354540 AT5G24550.1 47.083 480 236 7 20 482 32 510 2.70e-150 440
Msa0354540 AT2G44470.3 44.033 486 257 6 20 490 29 514 2.55e-144 426
Msa0354540 AT1G61820.1 45.455 484 249 6 17 486 27 509 2.95e-144 424
Msa0354540 AT3G60130.1 45.380 487 244 9 17 488 27 506 4.91e-144 423
Msa0354540 AT5G24540.1 47.808 479 234 7 20 482 32 510 4.40e-143 421
Msa0354540 AT2G25630.1 46.234 478 219 9 19 481 29 483 1.57e-141 416
Msa0354540 AT1G02850.2 44.304 474 238 8 21 482 27 486 4.70e-140 412
Msa0354540 AT5G54570.3 46.809 423 210 5 20 428 30 451 2.38e-138 406
Msa0354540 AT1G61810.1 44.191 482 254 6 20 487 33 513 3.03e-136 403
Msa0354540 AT4G21760.2 44.776 469 241 5 25 481 59 521 1.14e-134 400
Msa0354540 AT1G02850.5 42.254 497 238 9 21 482 27 509 1.76e-134 399
Msa0354540 AT1G51470.1 44.280 472 244 9 21 481 46 509 4.47e-134 397
Msa0354540 AT5G54570.2 47.537 406 198 5 90 481 4 408 4.91e-134 395
Msa0354540 AT1G47600.1 44.050 479 235 10 21 481 46 509 1.70e-133 396
Msa0354540 AT2G44460.1 45.738 481 244 8 22 487 31 509 2.25e-133 398
Msa0354540 AT1G47600.2 43.841 479 235 11 21 481 46 508 4.13e-133 395
Msa0354540 AT3G60120.1 43.205 493 255 10 9 482 4 490 4.30e-133 396
Msa0354540 AT1G02850.4 42.169 498 238 10 21 482 27 510 5.90e-133 395
Msa0354540 AT4G27830.1 43.038 474 244 8 21 481 24 484 1.32e-131 391
Msa0354540 AT1G61810.3 44.956 456 237 5 20 461 33 488 8.15e-131 390
Msa0354540 AT2G44480.2 44.660 412 215 5 87 486 1 411 2.34e-130 384
Msa0354540 AT4G21760.1 44.136 469 234 6 25 481 59 511 1.25e-129 387
Msa0354540 AT2G44490.1 42.062 485 250 11 22 482 16 493 1.84e-129 387
Msa0354540 AT2G32860.2 42.589 479 259 7 19 481 93 571 2.50e-129 389
Msa0354540 AT1G02850.1 42.194 474 221 9 21 482 27 459 3.80e-128 381
Msa0354540 AT2G32860.1 42.739 482 253 10 19 481 93 570 1.74e-127 384
Msa0354540 AT1G75940.1 43.558 489 247 11 21 485 38 521 4.69e-127 380
Msa0354540 AT1G66280.1 43.121 487 252 9 18 485 34 514 4.77e-127 380
Msa0354540 AT4G22100.1 41.438 473 252 9 22 482 24 483 1.00e-125 376
Msa0354540 AT3G62750.1 42.796 465 247 9 21 481 24 473 1.03e-125 375
Msa0354540 AT3G62750.2 42.796 465 247 9 21 481 50 499 1.93e-125 376
Msa0354540 AT1G45191.4 41.770 486 249 11 11 482 19 484 4.42e-125 374
Msa0354540 AT1G66270.1 43.121 487 252 10 18 485 34 514 1.99e-124 373
Msa0354540 AT3G21370.1 41.616 495 256 12 20 489 33 519 2.09e-124 373
Msa0354540 AT4G27820.1 42.678 478 238 9 21 481 24 482 1.21e-123 370
Msa0354540 AT1G60090.2 40.717 474 254 8 21 482 25 483 2.67e-122 367
Msa0354540 AT5G25980.2 41.336 479 260 9 21 483 51 524 4.55e-122 368
Msa0354540 AT5G28510.1 41.296 494 263 9 15 485 34 523 1.15e-121 366
Msa0354540 AT3G09260.1 41.975 486 258 10 19 485 34 514 1.54e-121 366
Msa0354540 AT1G45191.2 40.204 490 257 10 11 482 19 490 2.64e-121 365
Msa0354540 AT3G62740.1 41.277 470 252 9 21 481 24 478 2.93e-121 364
Msa0354540 AT1G66270.2 42.536 489 254 11 16 485 32 512 6.08e-121 364
Msa0354540 AT1G45191.6 40.606 495 253 11 11 482 19 495 1.31e-120 363
Msa0354540 AT1G60090.1 40.292 479 256 8 21 482 25 490 1.03e-119 361
Msa0354540 AT1G45191.1 40.159 503 256 11 11 482 19 507 1.26e-119 361
Msa0354540 AT1G52400.3 40.984 488 255 11 19 482 38 516 3.63e-118 357
Msa0354540 AT1G52400.1 40.984 488 255 11 19 482 38 516 3.63e-118 357
Msa0354540 AT2G44470.1 42.654 422 228 5 20 427 29 450 2.55e-117 352
Msa0354540 AT3G60130.2 43.230 421 220 7 81 488 40 454 1.21e-116 351
Msa0354540 AT3G03640.1 40.748 481 262 11 22 482 36 513 1.27e-116 353
Msa0354540 AT5G26000.1 40.514 506 264 14 2 481 17 511 1.93e-115 351
Msa0354540 AT3G60140.2 45.013 391 195 6 19 392 25 412 2.00e-115 348
Msa0354540 AT5G24540.2 45.154 423 217 6 20 427 32 454 4.38e-114 344
Msa0354540 AT3G60130.3 42.518 421 212 9 81 488 40 443 2.04e-111 337
Msa0354540 AT1G61810.5 42.822 411 221 5 90 487 4 413 7.55e-111 335
Msa0354540 AT3G18070.4 49.068 322 152 3 20 332 30 348 4.52e-110 332
Msa0354540 AT1G02850.3 42.365 406 192 7 21 392 27 424 3.52e-108 328
Msa0354540 AT3G62750.4 42.131 413 221 8 21 430 50 447 1.66e-106 325
Msa0354540 AT2G44470.2 47.975 321 155 3 20 328 29 349 5.37e-105 319
Msa0354540 AT1G61810.4 44.186 387 202 5 20 392 33 419 5.63e-105 320
Msa0354540 AT3G62740.2 41.446 415 220 8 21 427 24 423 1.16e-104 319
Msa0354540 AT4G27830.2 41.422 408 214 7 87 481 1 396 1.36e-104 319
Msa0354540 AT5G25980.3 40.521 422 232 7 21 428 51 467 5.18e-104 319
Msa0354540 AT5G25980.1 40.521 422 232 7 21 428 51 467 5.18e-104 319
Msa0354540 AT3G18070.2 48.447 322 152 5 172 482 102 420 2.74e-101 310
Msa0354540 AT3G18070.2 44.737 76 42 0 20 95 30 105 7.38e-16 80.1
Msa0354540 AT2G44480.4 47.095 327 159 5 5 319 51 375 6.76e-101 308
Msa0354540 AT1G61820.3 43.207 368 195 5 132 486 4 370 3.60e-99 303
Msa0354540 AT5G26000.2 39.690 451 237 12 2 428 17 456 4.13e-98 303
Msa0354540 AT1G45191.5 45.732 328 163 4 11 328 19 341 5.01e-98 301
Msa0354540 AT1G45191.3 45.732 328 163 4 11 328 19 341 5.42e-98 301
Msa0354540 AT3G62750.6 40.602 399 222 8 87 481 1 388 1.01e-97 301
Msa0354540 AT3G62750.5 40.602 399 222 8 87 481 1 388 1.01e-97 301
Msa0354540 AT4G27820.2 40.777 412 212 8 87 481 1 397 9.12e-97 299
Msa0354540 AT4G27820.3 40.777 412 212 8 87 481 1 397 9.12e-97 299
Msa0354540 AT2G44450.2 42.618 359 190 4 139 486 1 354 1.98e-96 295
Msa0354540 AT1G60270.1 45.253 316 160 3 21 327 25 336 8.43e-95 292
Msa0354540 AT3G18070.7 47.267 311 150 5 183 482 1 308 1.13e-94 290
Msa0354540 AT3G62750.7 46.753 308 158 3 21 327 24 326 1.26e-94 291
Msa0354540 AT3G62750.8 46.753 308 158 3 21 327 24 326 1.26e-94 291
Msa0354540 AT3G62750.3 46.753 308 158 3 21 327 50 352 1.89e-93 291
Msa0354540 AT1G52400.2 38.657 432 233 10 19 427 38 460 2.11e-92 289
Msa0354540 AT2G44460.2 44.110 365 188 7 137 487 1 363 3.01e-88 277
Msa0354540 AT2G44480.5 41.830 306 166 4 192 486 3 307 1.05e-85 266
Msa0354540 AT5G48375.1 36.830 429 212 9 21 446 39 411 2.40e-84 267
Msa0354540 AT1G61810.2 47.794 272 132 2 20 281 33 304 6.58e-81 254
Msa0354540 AT1G51490.1 43.730 311 154 9 28 327 28 328 3.24e-74 240
Msa0354540 AT1G60270.2 44.082 245 127 2 92 327 6 249 6.72e-68 219
Msa0354540 AT3G18070.5 44.635 233 118 3 172 393 102 334 1.91e-62 207
Msa0354540 AT3G18070.5 44.737 76 42 0 20 95 30 105 3.67e-16 80.1
Msa0354540 AT3G18070.6 42.793 222 116 3 183 393 1 222 9.39e-56 186
Msa0354540 AT5G16580.1 35.417 288 160 7 163 438 26 299 3.27e-51 176
Msa0354540 AT3G06510.2 26.389 432 257 13 82 490 159 552 5.51e-27 115
Msa0354540 AT3G06510.1 26.730 419 238 14 82 490 159 518 8.80e-27 114

Find 116 sgRNAs with CRISPR-Local

Find 373 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTATCCTCCTCCGAGAATT+TGG 0.134106 3_1:-26117313 None:intergenic
ATCAATGCTCTTCTTGAAAA+AGG 0.186679 3_1:+26115891 Msa0354540:CDS
GATACTTGCTTTGCAAGTTT+TGG 0.249512 3_1:+26116421 Msa0354540:CDS
ACCTCGTTGTATAGTGATTT+AGG 0.261744 3_1:-26117368 None:intergenic
TTGAATTCTTTGGACTTCAT+TGG 0.280186 3_1:+26117345 Msa0354540:CDS
TTCTTGCATCCACTATATTA+TGG 0.285971 3_1:+26117246 Msa0354540:CDS
ACACTTTGCATGGTCATTAC+TGG 0.300766 3_1:+26119421 Msa0354540:CDS
TCTTCAATCTTATCAGAGTT+TGG 0.311629 3_1:-26116883 None:intergenic
GTGGCTATATGTTGTTCCTT+GGG 0.339471 3_1:+26117691 Msa0354540:CDS
GCTAAGACAAATATAAATAA+TGG 0.341002 3_1:-26119750 None:intergenic
GTGGTAGAGGTCCTAGTATA+TGG 0.341211 3_1:+26114110 Msa0354540:CDS
TGATGATGTGCTGCTAAGTA+TGG 0.341542 3_1:-26116553 None:intergenic
TTCCCTTCTGACTTCGTCTT+CGG 0.363760 3_1:+26113287 Msa0354540:CDS
AGTCGCCACTTCTGCTTATC+AGG 0.367564 3_1:+26113310 Msa0354540:CDS
TCATCTAGCATCTCATTTAG+TGG 0.371886 3_1:-26118499 None:intergenic
TGCTTATTTCTATAGATAGA+AGG 0.374326 3_1:+26114073 Msa0354540:intron
AGTGGCTATATGTTGTTCCT+TGG 0.380075 3_1:+26117690 Msa0354540:CDS
CCATTCTCGGTGACATATAT+CGG 0.385270 3_1:-26117758 None:intergenic
CGCAGAAGACTTTGGGTGCC+TGG 0.387348 3_1:-26119516 None:intergenic
CAAGGTTATACCAAACGTTT+CGG 0.394401 3_1:+26119461 Msa0354540:CDS
TGATCATTATCATCGTTATA+AGG 0.400828 3_1:+26114273 Msa0354540:CDS
TTATCCTCCTCCGAGAATTT+GGG 0.401648 3_1:-26117312 None:intergenic
ACCCAAAGTCTTCTGCGTAT+TGG 0.406488 3_1:+26119522 Msa0354540:CDS
ACCAATACGCAGAAGACTTT+GGG 0.411776 3_1:-26119523 None:intergenic
ATGTTGTTCCTTGGGGTCTT+CGG 0.421588 3_1:+26117699 Msa0354540:CDS
AGAAAGTCACATACCATTCT+CGG 0.427765 3_1:-26117771 None:intergenic
ACCCACCAACTGCGGTTTGA+AGG 0.428874 3_1:-26116480 None:intergenic
GCACAACAGTTGGACAGAAT+TGG 0.429464 3_1:+26117438 Msa0354540:CDS
GGCTGGTTGTAGACTCTGAA+TGG 0.429555 3_1:+26116854 Msa0354540:CDS
CCGATATATGTCACCGAGAA+TGG 0.434496 3_1:+26117758 Msa0354540:CDS
GTTTGACCTTGTACTTGCTT+CGG 0.440391 3_1:-26116609 None:intergenic
GAAGAATTCATGAGAGAAAA+CGG 0.444289 3_1:+26113227 Msa0354540:CDS
TATTGATCTTATAGCCAAGT+TGG 0.446830 3_1:+26114683 Msa0354540:CDS
GCTAGCAAGGAGGGTGGTAG+AGG 0.457690 3_1:+26114097 Msa0354540:CDS
AACCAATACGCAGAAGACTT+TGG 0.457762 3_1:-26119524 None:intergenic
AGTCGTTCACGCATAACTTC+AGG 0.457789 3_1:-26117276 None:intergenic
ATTGATCTTATAGCCAAGTT+GGG 0.461829 3_1:+26114684 Msa0354540:CDS
ACCACTTGAGCTCAGTTGCT+TGG 0.463352 3_1:-26119795 None:intergenic
CCCCTTCAAACCGCAGTTGG+TGG 0.465082 3_1:+26116478 Msa0354540:CDS
CTTGTCGTAATGACATTCTT+CGG 0.465885 3_1:-26117415 None:intergenic
AGCAGCACATCATCAAATCT+TGG 0.471284 3_1:+26116561 Msa0354540:CDS
AGACCGACTTCCCAAATTCT+CGG 0.471407 3_1:+26117302 Msa0354540:CDS
TGGGAAGGCGGGGAGCTCAT+TGG 0.475634 3_1:+26117547 Msa0354540:CDS
ACTGCATCTTGATGAGTCAA+TGG 0.476677 3_1:+26116031 Msa0354540:CDS
TTTCGCGGTTTCTTAAAGAT+GGG 0.480453 3_1:+26119546 Msa0354540:CDS
ATAGACCAATCCGAAACGTT+TGG 0.490953 3_1:-26119471 None:intergenic
GCATAGGCATCCCATATACT+AGG 0.491716 3_1:-26114121 None:intergenic
TTTATGGGTGTAGATGGCTT+AGG 0.494310 3_1:+26115825 Msa0354540:intron
CCCACCAACTGCGGTTTGAA+GGG 0.498031 3_1:-26116479 None:intergenic
ACCAGCCAAGACGAAAATCT+AGG 0.501744 3_1:-26116927 None:intergenic
AGAGAAAACGGCTTTGAGAA+AGG 0.503990 3_1:+26113239 Msa0354540:CDS
GGAACCAATGTCAATGATGA+AGG 0.509270 3_1:+26115846 Msa0354540:CDS
TCTTAAAGATGGGGCAAACA+AGG 0.510413 3_1:+26119556 Msa0354540:CDS
CACAGTTGAATGGGAAGGCG+GGG 0.517438 3_1:+26117537 Msa0354540:intron
CAATGGTACAAAGTTACAAA+AGG 0.518258 3_1:-26115999 None:intergenic
CTGCATCTTGATGAGTCAAT+GGG 0.519946 3_1:+26116032 Msa0354540:CDS
GGATAGTCTCCATAATATAG+TGG 0.522297 3_1:-26117255 None:intergenic
GAAGTTATGCGTGAACGACT+TGG 0.522922 3_1:+26117279 Msa0354540:CDS
GCTGGTTGTAGACTCTGAAT+GGG 0.524122 3_1:+26116855 Msa0354540:CDS
ATAGATAGAAGGTGCTAGCA+AGG 0.527398 3_1:+26114084 Msa0354540:intron
TATTTACCGAAGCAAGTACA+AGG 0.527429 3_1:+26116603 Msa0354540:CDS
TCACAGTTGAATGGGAAGGC+GGG 0.530118 3_1:+26117536 Msa0354540:intron
CCCTTCAAACCGCAGTTGGT+GGG 0.530206 3_1:+26116479 Msa0354540:CDS
GTATTTGGTAAGACACATAA+TGG 0.534050 3_1:-26119603 None:intergenic
TTATACCAAACGTTTCGGAT+TGG 0.536707 3_1:+26119466 Msa0354540:CDS
ACCAAGCAACTGAGCTCAAG+TGG 0.539428 3_1:+26119794 Msa0354540:three_prime_UTR
TGGTAGAGGTCCTAGTATAT+GGG 0.543561 3_1:+26114111 Msa0354540:CDS
GATGCTGGAGTTAATGCTCC+TGG 0.547337 3_1:+26116505 Msa0354540:CDS
ATTACTGGACAACTTCGAAT+GGG 0.548009 3_1:+26119436 Msa0354540:CDS
ATAGAAGGTGCTAGCAAGGA+GGG 0.552629 3_1:+26114088 Msa0354540:CDS
TTACGACAAGGCACAACAGT+TGG 0.552696 3_1:+26117428 Msa0354540:CDS
CTCCGAAGACGAAGTCAGAA+GGG 0.552955 3_1:-26113289 None:intergenic
CATTACTGGACAACTTCGAA+TGG 0.554051 3_1:+26119435 Msa0354540:CDS
AAATAGAAACAGCTTCTGCA+TGG 0.554274 3_1:-26116585 None:intergenic
GCAGTTGGTGGGTATGATGC+TGG 0.554523 3_1:+26116490 Msa0354540:CDS
ACTCCGAAGACGAAGTCAGA+AGG 0.555275 3_1:-26113290 None:intergenic
CGGGGAGCTCATTGGTGAGA+AGG 0.559264 3_1:+26117555 Msa0354540:CDS
TGGCTATATGTTGTTCCTTG+GGG 0.561938 3_1:+26117692 Msa0354540:CDS
CTGCGAGTTCGCTATTACAA+GGG 0.562943 3_1:+26118526 Msa0354540:CDS
ACTGCGAGTTCGCTATTACA+AGG 0.565427 3_1:+26118525 Msa0354540:CDS
TATGCCTTCATCATTGACAT+TGG 0.565847 3_1:-26115850 None:intergenic
ATCTAGGTGTCTCGCAGCAG+CGG 0.565847 3_1:-26116911 None:intergenic
CCTCCGAGAATTTGGGAAGT+CGG 0.566416 3_1:-26117305 None:intergenic
ATGCTTTGTATAAACTAGAG+TGG 0.575330 3_1:+26119670 Msa0354540:three_prime_UTR
TTCACAGTTGAATGGGAAGG+CGG 0.576115 3_1:+26117535 Msa0354540:intron
TTCGCGGTTTCTTAAAGATG+GGG 0.576695 3_1:+26119547 Msa0354540:CDS
GACAACTTCGAATGGGCTCA+AGG 0.583519 3_1:+26119443 Msa0354540:CDS
GTAAGCGTTGAAACCCAACT+TGG 0.587967 3_1:-26114697 None:intergenic
ATATCTTGCATCACTTGCGC+AGG 0.589670 3_1:+26118549 Msa0354540:CDS
CTTAAAGATGGGGCAAACAA+GGG 0.591688 3_1:+26119557 Msa0354540:CDS
GATGCCTATGCTTATACTGA+AGG 0.593156 3_1:+26114133 Msa0354540:CDS
GAGCCCCTTCAAACCGCAGT+TGG 0.595137 3_1:+26116475 Msa0354540:CDS
AAGTACCTGATAAGCAGAAG+TGG 0.596695 3_1:-26113315 None:intergenic
ACTTCCCAAATTCTCGGAGG+AGG 0.598018 3_1:+26117308 Msa0354540:CDS
AATAGAAACAGCTTCTGCAT+GGG 0.599937 3_1:-26116584 None:intergenic
CCACCAACTGCGGTTTGAAG+GGG 0.600742 3_1:-26116478 None:intergenic
AAAATACTCGACAAAAGCAA+TGG 0.611643 3_1:+26114238 Msa0354540:CDS
ATTGACTCATCAAGATGCAG+TGG 0.618454 3_1:-26116029 None:intergenic
TGATGTTCCAGGATAAGCAA+GGG 0.620122 3_1:+26116821 Msa0354540:intron
AGGGATGGAGCTGATGTGAG+AGG 0.625962 3_1:+26119398 Msa0354540:intron
CATACCTTCAGTATAAGCAT+AGG 0.630354 3_1:-26114137 None:intergenic
TTGATGTTCCAGGATAAGCA+AGG 0.633558 3_1:+26116820 Msa0354540:intron
ATGTGAGAGGACACTTTGCA+TGG 0.634153 3_1:+26119411 Msa0354540:CDS
ATAATCTTCCGAAGACCCCA+AGG 0.634887 3_1:-26117707 None:intergenic
TTGATGAGTCAATGGGAGGA+TGG 0.652779 3_1:+26116039 Msa0354540:CDS
CGAAGAATGTCATTACGACA+AGG 0.654678 3_1:+26117416 Msa0354540:CDS
GATAGAAGGTGCTAGCAAGG+AGG 0.656517 3_1:+26114087 Msa0354540:intron
GATGTTCCAGGATAAGCAAG+GGG 0.676059 3_1:+26116822 Msa0354540:intron
GAAGGTGCTAGCAAGGAGGG+TGG 0.683982 3_1:+26114091 Msa0354540:CDS
AGCATCATACCCACCAACTG+CGG 0.685967 3_1:-26116488 None:intergenic
CATCTTGATGAGTCAATGGG+AGG 0.710481 3_1:+26116035 Msa0354540:CDS
TATAACAGGCAGCATCAGAG+TGG 0.713683 3_1:+26117672 Msa0354540:intron
GATGCAGTGGAAGATCCCAA+TGG 0.714924 3_1:-26116016 None:intergenic
CCGACTTCCCAAATTCTCGG+AGG 0.756560 3_1:+26117305 Msa0354540:CDS
ATGTTCCAGGATAAGCAAGG+GGG 0.760256 3_1:+26116823 Msa0354540:intron
GCCTAAATCACTATACAACG+AGG 0.773876 3_1:+26117367 Msa0354540:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTTTAAAGTAAAAGAAA+AGG + chr3_1:26115029-26115048 Msa0354540:intron 10.0%
!! TAACAAATTAAATATATACT+TGG - chr3_1:26116269-26116288 None:intergenic 10.0%
!!! GTATATATTTAATTTGTTAT+TGG + chr3_1:26116270-26116289 Msa0354540:intron 10.0%
!! ATATTTATCAAAAAATTTAG+AGG - chr3_1:26116302-26116321 None:intergenic 10.0%
!!! AAGACTTTCAATATTTTAAA+AGG + chr3_1:26113467-26113486 Msa0354540:intron 15.0%
!!! ATTAACTTTTACAAAAGTAT+AGG - chr3_1:26113940-26113959 None:intergenic 15.0%
!! AAATACATATCTTCTTTATA+TGG + chr3_1:26114779-26114798 Msa0354540:intron 15.0%
!! TATGTAAAACCTAAAAATAA+TGG - chr3_1:26115703-26115722 None:intergenic 15.0%
!!! TATTATATTGCAATGTTTTA+TGG + chr3_1:26115809-26115828 Msa0354540:intron 15.0%
!!! ATTATATTGCAATGTTTTAT+GGG + chr3_1:26115810-26115829 Msa0354540:intron 15.0%
!! TAGAAGAGATAAAAATATTA+AGG - chr3_1:26115941-26115960 None:intergenic 15.0%
!! TATAAAACAAATGTATGTAT+AGG - chr3_1:26116957-26116976 None:intergenic 15.0%
!!! AAAATTTCTTTTGAATTCTT+TGG + chr3_1:26117335-26117354 Msa0354540:CDS 15.0%
!! TATATTAAAAAACGATAGAA+GGG - chr3_1:26118081-26118100 None:intergenic 15.0%
!!! CGTTAATTTGAAAAATAAAT+AGG - chr3_1:26118629-26118648 None:intergenic 15.0%
!! TAATATAAAAACGAAGTATA+TGG + chr3_1:26118909-26118928 Msa0354540:intron 15.0%
!!! TATAAATAATGGAGTTTTAA+AGG - chr3_1:26119742-26119761 None:intergenic 15.0%
!! GTTGATTATTTATTACTTTG+TGG + chr3_1:26113680-26113699 Msa0354540:intron 20.0%
!!! TTACTATTTTTGTGTTGTTT+TGG + chr3_1:26114210-26114229 Msa0354540:intron 20.0%
!! TTAAAAATAGACTCAATATG+GGG - chr3_1:26114526-26114545 None:intergenic 20.0%
!! CTTAAAAATAGACTCAATAT+GGG - chr3_1:26114527-26114546 None:intergenic 20.0%
!!! TTTTTACTTTACCATCTTAT+CGG - chr3_1:26114991-26115010 None:intergenic 20.0%
!!! TAATTAATTTGGTAAAGGTT+TGG - chr3_1:26115504-26115523 None:intergenic 20.0%
!!! TAAGTAGTGGATAATTAATT+TGG - chr3_1:26115515-26115534 None:intergenic 20.0%
!!! ACCTAAAAATAATGGTTTTA+GGG - chr3_1:26115695-26115714 None:intergenic 20.0%
!!! AACCTAAAAATAATGGTTTT+AGG - chr3_1:26115696-26115715 None:intergenic 20.0%
!!! CTTACATTAATATGTTGATT+TGG + chr3_1:26115743-26115762 Msa0354540:intron 20.0%
!! TGGGAAATGATTAATATATA+TGG - chr3_1:26115968-26115987 None:intergenic 20.0%
!! GTTGAATAAAAATATCATGT+AGG + chr3_1:26116061-26116080 Msa0354540:intron 20.0%
!! GTTGAATAAAAAAATCATGT+AGG + chr3_1:26116194-26116213 Msa0354540:intron 20.0%
!! TATCAAAAAATTTAGAGGTA+AGG - chr3_1:26116297-26116316 None:intergenic 20.0%
!! ATAAATGTAATCTAACAAGT+AGG - chr3_1:26116647-26116666 None:intergenic 20.0%
!! ATATTAAAAAACGATAGAAG+GGG - chr3_1:26118080-26118099 None:intergenic 20.0%
!! GTATATTAAAAAACGATAGA+AGG - chr3_1:26118082-26118101 None:intergenic 20.0%
!!! ATAAACAGATTTTATATGAC+TGG + chr3_1:26118391-26118410 Msa0354540:intron 20.0%
!! ATTAAACCATGAAATAAATG+AGG - chr3_1:26118980-26118999 None:intergenic 20.0%
!!! TTCAATGTTTTTAAGCAAAT+AGG - chr3_1:26119127-26119146 None:intergenic 20.0%
!! AGAAGAGGATAAAAAAATTA+AGG + chr3_1:26119224-26119243 Msa0354540:intron 20.0%
!! GAAGAGGATAAAAAAATTAA+GGG + chr3_1:26119225-26119244 Msa0354540:intron 20.0%
!! CAAATGATATACAAAACTTT+AGG - chr3_1:26119371-26119390 None:intergenic 20.0%
!!! CATTATTTTCTAGTAGTATT+TGG - chr3_1:26119621-26119640 None:intergenic 20.0%
!! GCTAAGACAAATATAAATAA+TGG - chr3_1:26119753-26119772 None:intergenic 20.0%
! TTTAAAAGGTCAAATACATC+CGG + chr3_1:26113481-26113500 Msa0354540:intron 25.0%
! AATTTCGAGATCAAGATAAA+TGG - chr3_1:26113649-26113668 None:intergenic 25.0%
!!! CTTTGTTATAGTTGTTTTTG+TGG + chr3_1:26113754-26113773 Msa0354540:intron 25.0%
!!! TGCTTATTTCTATAGATAGA+AGG + chr3_1:26114073-26114092 Msa0354540:intron 25.0%
!!! TATTTTTGTGTTGTTTTGGT+AGG + chr3_1:26114214-26114233 Msa0354540:intron 25.0%
! TGATCATTATCATCGTTATA+AGG + chr3_1:26114273-26114292 Msa0354540:CDS 25.0%
! AATTGGCATACACAATATTT+AGG - chr3_1:26114319-26114338 None:intergenic 25.0%
! GCTTAAAAATAGACTCAATA+TGG - chr3_1:26114528-26114547 None:intergenic 25.0%
!! CTTACAGATTTTCAATTTCT+TGG + chr3_1:26114715-26114734 Msa0354540:CDS 25.0%
! ATCACTAATAAAACATACCA+GGG - chr3_1:26114752-26114771 None:intergenic 25.0%
! TGTTTACAACAGTTGATTAA+AGG + chr3_1:26114923-26114942 Msa0354540:intron 25.0%
!! GCTTAAATTAAGTCTTTTCT+GGG + chr3_1:26114945-26114964 Msa0354540:intron 25.0%
! GATGGTAAAGTAAAAAAGAT+AGG + chr3_1:26114995-26115014 Msa0354540:intron 25.0%
! TAAAGTAAAAAAGATAGGAG+AGG + chr3_1:26115000-26115019 Msa0354540:intron 25.0%
!!! AGTGCAATTTTTTTATACAG+TGG + chr3_1:26115101-26115120 Msa0354540:intron 25.0%
!!! GTGCAATTTTTTTATACAGT+GGG + chr3_1:26115102-26115121 Msa0354540:intron 25.0%
!!! TGCAATTTTTTTATACAGTG+GGG + chr3_1:26115103-26115122 Msa0354540:intron 25.0%
! TAGCAAAATAAAAATGAAGC+AGG + chr3_1:26115173-26115192 Msa0354540:intron 25.0%
! AGCAAAATAAAAATGAAGCA+GGG + chr3_1:26115174-26115193 Msa0354540:intron 25.0%
!! ATTAGTCAACAACTTGTTTA+AGG - chr3_1:26115309-26115328 None:intergenic 25.0%
!! AACAAGTTGTTGACTAATAT+AGG + chr3_1:26115311-26115330 Msa0354540:intron 25.0%
!! GTGGATAATTAATTTGGTAA+AGG - chr3_1:26115509-26115528 None:intergenic 25.0%
!!! TCCCTAAAACCATTATTTTT+AGG + chr3_1:26115691-26115710 Msa0354540:intron 25.0%
! TAAAAATATTAAGGCAAAGC+AGG - chr3_1:26115932-26115951 None:intergenic 25.0%
! ATATATTAATCATTTCCCAC+AGG + chr3_1:26115969-26115988 Msa0354540:intron 25.0%
!! TTTTGTAACTTTGTACCATT+GGG + chr3_1:26116001-26116020 Msa0354540:CDS 25.0%
! AAGTATTAAAGGTTATGATG+TGG + chr3_1:26116172-26116191 Msa0354540:intron 25.0%
! TGAAAATATATTCTTCGAGT+AGG - chr3_1:26116702-26116721 None:intergenic 25.0%
!! ATATTTTCAATCATCCTACA+TGG + chr3_1:26116713-26116732 Msa0354540:intron 25.0%
! TATATCAAGTGGAAAATCTA+TGG - chr3_1:26117001-26117020 None:intergenic 25.0%
! ATTAAACTCAAAACAGCAAA+AGG + chr3_1:26117119-26117138 Msa0354540:intron 25.0%
! GATAGAATATATTCTTAACC+AGG + chr3_1:26117223-26117242 Msa0354540:intron 25.0%
! AGAATATAAACTTGCATCTT+TGG - chr3_1:26117645-26117664 None:intergenic 25.0%
! ATATTCTATGTGCATATAAC+AGG + chr3_1:26117658-26117677 Msa0354540:intron 25.0%
!!! TCCACTTTTAGAAAACAAAT+AGG + chr3_1:26117805-26117824 Msa0354540:intron 25.0%
!!! CCACTTTTAGAAAACAAATA+GGG + chr3_1:26117806-26117825 Msa0354540:intron 25.0%
! CAAAGAGAACAAAACATAAA+AGG - chr3_1:26117938-26117957 None:intergenic 25.0%
!!! CTTTTATGTTTTGTTCTCTT+TGG + chr3_1:26117936-26117955 Msa0354540:intron 25.0%
!!! TTTTGGCTTTACATAAATAC+TGG - chr3_1:26117964-26117983 None:intergenic 25.0%
!! AGGAAAAAAGTGATACATTT+TGG - chr3_1:26117981-26118000 None:intergenic 25.0%
!! GTAAGAAAAGTGATACATTT+TGG - chr3_1:26118050-26118069 None:intergenic 25.0%
! CAATACATAACAGGATAAAT+TGG - chr3_1:26118106-26118125 None:intergenic 25.0%
! AGTTAGAAACAATACATAAC+AGG - chr3_1:26118115-26118134 None:intergenic 25.0%
! TCGTGAACTATAAAAAAGAA+CGG + chr3_1:26118188-26118207 Msa0354540:intron 25.0%
!! AGAACCATTTTATAAAGTTC+TGG - chr3_1:26118418-26118437 None:intergenic 25.0%
! AAATGGTTCTCGTATTTATA+AGG + chr3_1:26118428-26118447 Msa0354540:intron 25.0%
! TATGAATAGAGAGAATTGAA+TGG + chr3_1:26118654-26118673 Msa0354540:intron 25.0%
!! AAACATTGAAAGTTTAGAAC+AGG + chr3_1:26119137-26119156 Msa0354540:intron 25.0%
!! AACATTGAAAGTTTAGAACA+GGG + chr3_1:26119138-26119157 Msa0354540:intron 25.0%
! AAATCATGTATAGATCAGAA+AGG - chr3_1:26119202-26119221 None:intergenic 25.0%
! GTCTATGTAGATTACAAAAA+TGG + chr3_1:26119488-26119507 Msa0354540:CDS 25.0%
!! CATACAATGACAAAAGTTTT+TGG - chr3_1:26119649-26119668 None:intergenic 25.0%
GAAGAATTCATGAGAGAAAA+CGG + chr3_1:26113227-26113246 Msa0354540:CDS 30.0%
!!! TTGATGCTTTTTCGATGATT+TGG + chr3_1:26113395-26113414 Msa0354540:intron 30.0%
AACGTTAAACATAAAGACTC+CGG - chr3_1:26113503-26113522 None:intergenic 30.0%
!! AGTCTTGTTATATGCATCTT+TGG - chr3_1:26113843-26113862 None:intergenic 30.0%
ATTAGAAACATAGAAAACCG+TGG - chr3_1:26113898-26113917 None:intergenic 30.0%
TACCAATACCATTACTCATT+CGG - chr3_1:26114005-26114024 None:intergenic 30.0%
AGCACAATTTGAGCAAATTA+AGG - chr3_1:26114173-26114192 None:intergenic 30.0%
! TAGTAAGTAATGAAGCATCA+AGG - chr3_1:26114196-26114215 None:intergenic 30.0%
AAAATACTCGACAAAAGCAA+TGG + chr3_1:26114238-26114257 Msa0354540:CDS 30.0%
!! TTGTCTTTCTGGATTGATTT+TGG + chr3_1:26114443-26114462 Msa0354540:intron 30.0%
!! GCATTTAAATGTTGCTTTAC+AGG + chr3_1:26114483-26114502 Msa0354540:intron 30.0%
CTTAATGTAACTATGTGAAC+AGG + chr3_1:26114656-26114675 Msa0354540:intron 30.0%
TATTGATCTTATAGCCAAGT+TGG + chr3_1:26114683-26114702 Msa0354540:CDS 30.0%
ATTGATCTTATAGCCAAGTT+GGG + chr3_1:26114684-26114703 Msa0354540:CDS 30.0%
CATCACTAATAAAACATACC+AGG - chr3_1:26114753-26114772 None:intergenic 30.0%
TTGATAAACTTCTAGGCTTA+AGG - chr3_1:26114842-26114861 None:intergenic 30.0%
!! TATTGACCAAGTATTGATGA+CGG - chr3_1:26114870-26114889 None:intergenic 30.0%
ATGTCTTTATGAGACAAAAG+AGG - chr3_1:26114904-26114923 None:intergenic 30.0%
! GGCTTAAATTAAGTCTTTTC+TGG + chr3_1:26114944-26114963 Msa0354540:intron 30.0%
! TAAATTAAGTCTTTTCTGGG+AGG + chr3_1:26114948-26114967 Msa0354540:intron 30.0%
!! AAATTAAGTCTTTTCTGGGA+GGG + chr3_1:26114949-26114968 Msa0354540:intron 30.0%
!!! AATTTTTTTATACAGTGGGG+AGG + chr3_1:26115106-26115125 Msa0354540:intron 30.0%
ACATTACATATCCTTTCCTA+TGG - chr3_1:26115215-26115234 None:intergenic 30.0%
! TTGTTGACTAATATAGGAGA+TGG + chr3_1:26115317-26115336 Msa0354540:intron 30.0%
TATTTCTTGTGCAGAGTTTA+CGG - chr3_1:26115374-26115393 None:intergenic 30.0%
TAAACTCTGCACAAGAAATA+TGG + chr3_1:26115374-26115393 Msa0354540:intron 30.0%
GAGCTTAATTTCATAGTTCA+AGG - chr3_1:26115409-26115428 None:intergenic 30.0%
! CAAGATTGCTAAATGTTTTG+AGG + chr3_1:26115647-26115666 Msa0354540:intron 30.0%
!!! AAATAATGGTTTTAGGGACA+AGG - chr3_1:26115689-26115708 None:intergenic 30.0%
ATCAATGCTCTTCTTGAAAA+AGG + chr3_1:26115891-26115910 Msa0354540:CDS 30.0%
CAATGGTACAAAGTTACAAA+AGG - chr3_1:26116002-26116021 None:intergenic 30.0%
! CTTTTGTAACTTTGTACCAT+TGG + chr3_1:26116000-26116019 Msa0354540:CDS 30.0%
!! GATGTGCTTGAAAGTATTAA+AGG + chr3_1:26116161-26116180 Msa0354540:intron 30.0%
TCTTCAATCTTATCAGAGTT+TGG - chr3_1:26116886-26116905 None:intergenic 30.0%
CTTCATGCATTTATATCAAG+TGG - chr3_1:26117012-26117031 None:intergenic 30.0%
TATAAATGCATGAAGATGTG+TGG + chr3_1:26117017-26117036 Msa0354540:intron 30.0%
! TACATTTTTGCGTTTAACGT+TGG + chr3_1:26117063-26117082 Msa0354540:intron 30.0%
TTCTTGCATCCACTATATTA+TGG + chr3_1:26117246-26117265 Msa0354540:CDS 30.0%
TTGAATTCTTTGGACTTCAT+TGG + chr3_1:26117345-26117364 Msa0354540:CDS 30.0%
! TCATCAAGGAAGATTCATTT+TGG - chr3_1:26117504-26117523 None:intergenic 30.0%
!! TTTTCTAAAAGTGGACAAGA+AGG - chr3_1:26117800-26117819 None:intergenic 30.0%
!! CCCTATTTGTTTTCTAAAAG+TGG - chr3_1:26117809-26117828 None:intergenic 30.0%
TTTGAATCTTCTGTAGTGTT+TGG + chr3_1:26117886-26117905 Msa0354540:intron 30.0%
AGAGAACAAAACATAAAAGG+CGG - chr3_1:26117935-26117954 None:intergenic 30.0%
GAAAATAGAACAGAACATGT+AGG - chr3_1:26118001-26118020 None:intergenic 30.0%
!!! CATTTTGGTTCTACACAAAT+GGG - chr3_1:26118035-26118054 None:intergenic 30.0%
!!! ACATTTTGGTTCTACACAAA+TGG - chr3_1:26118036-26118055 None:intergenic 30.0%
! TAACTTGTCTCTCAAATGAA+TGG + chr3_1:26118130-26118149 Msa0354540:intron 30.0%
AGAACGGAAATATGTGTAAA+TGG + chr3_1:26118204-26118223 Msa0354540:intron 30.0%
TTATGTTATATGGCTCAACA+AGG + chr3_1:26118238-26118257 Msa0354540:intron 30.0%
AATCCTGATTAGATAGCATA+AGG + chr3_1:26118321-26118340 Msa0354540:intron 30.0%
GTTGAAGATATGTCAACAAT+AGG + chr3_1:26118343-26118362 Msa0354540:intron 30.0%
TGGACCAGAACTTTATAAAA+TGG + chr3_1:26118411-26118430 Msa0354540:intron 30.0%
ATAGGTTTAACTCATAGATG+AGG - chr3_1:26118611-26118630 None:intergenic 30.0%
TTCTCATAAATCAATCAAGC+TGG + chr3_1:26118685-26118704 Msa0354540:intron 30.0%
!! GATTTTCTGTTTGTTACACA+TGG - chr3_1:26118761-26118780 None:intergenic 30.0%
TTTAGTTAAGTGAGATCACA+AGG - chr3_1:26118940-26118959 None:intergenic 30.0%
TGCATTCCTCATTTATTTCA+TGG + chr3_1:26118971-26118990 Msa0354540:intron 30.0%
! GTTATGAACTTGTTTAGTGA+CGG - chr3_1:26119032-26119051 None:intergenic 30.0%
!! CTATACATGATTTTGAGAAG+AGG + chr3_1:26119209-26119228 Msa0354540:intron 30.0%
TGTATATCATTTGAATGCAC+AGG + chr3_1:26119378-26119397 Msa0354540:intron 30.0%
GTATATCATTTGAATGCACA+GGG + chr3_1:26119379-26119398 Msa0354540:intron 30.0%
GTATTTGGTAAGACACATAA+TGG - chr3_1:26119606-26119625 None:intergenic 30.0%
ATGCTTTGTATAAACTAGAG+TGG + chr3_1:26119670-26119689 Msa0354540:three_prime_UTR 30.0%
GAGCTTGAAATTTGAACTGT+CGG + chr3_1:26113604-26113623 Msa0354540:intron 35.0%
AGCTTGAAATTTGAACTGTC+GGG + chr3_1:26113605-26113624 Msa0354540:intron 35.0%
! GTGTTATTCTAACCTATCCA+CGG + chr3_1:26113878-26113897 Msa0354540:intron 35.0%
AAACATAGAAAACCGTGGAT+AGG - chr3_1:26113893-26113912 None:intergenic 35.0%
ACCAATACCATTACTCATTC+GGG - chr3_1:26114004-26114023 None:intergenic 35.0%
!! GAATGAGTAATGGTATTGGT+AGG + chr3_1:26114004-26114023 Msa0354540:intron 35.0%
CATACCTTCAGTATAAGCAT+AGG - chr3_1:26114140-26114159 None:intergenic 35.0%
AAAGACCAATGCTAGACAAT+TGG - chr3_1:26114336-26114355 None:intergenic 35.0%
CACAAAAATCTTTCCTCACT+TGG - chr3_1:26114413-26114432 None:intergenic 35.0%
! CAAGTGAGGAAAGATTTTTG+TGG + chr3_1:26114411-26114430 Msa0354540:intron 35.0%
GGTTGTACATATTGTCTTTC+TGG + chr3_1:26114432-26114451 Msa0354540:intron 35.0%
! ACTTTACCATCTTATCGGTT+GGG - chr3_1:26114986-26115005 None:intergenic 35.0%
TACTTTACCATCTTATCGGT+TGG - chr3_1:26114987-26115006 None:intergenic 35.0%
AAAAATGTGACACACACTAC+TGG + chr3_1:26115268-26115287 Msa0354540:intron 35.0%
ACTAACAGACTTAAACCATC+CGG + chr3_1:26115457-26115476 Msa0354540:intron 35.0%
TATGTGAACGATGTAAGTAG+TGG - chr3_1:26115528-26115547 None:intergenic 35.0%
! TGTAGCAGGTTAGTTAGAAT+GGG - chr3_1:26115553-26115572 None:intergenic 35.0%
! ATGTAGCAGGTTAGTTAGAA+TGG - chr3_1:26115554-26115573 None:intergenic 35.0%
ATTCTAACTAACCTGCTACA+TGG + chr3_1:26115553-26115572 Msa0354540:intron 35.0%
! CAATGTTTTATGGGTGTAGA+TGG + chr3_1:26115819-26115838 Msa0354540:intron 35.0%
TATGCCTTCATCATTGACAT+TGG - chr3_1:26115853-26115872 None:intergenic 35.0%
ACAAAAGGTTGAATACCTGT+GGG - chr3_1:26115987-26116006 None:intergenic 35.0%
TACAAAAGGTTGAATACCTG+TGG - chr3_1:26115988-26116007 None:intergenic 35.0%
AGGTATCATCTAACTGAGTA+TGG + chr3_1:26116214-26116233 Msa0354540:intron 35.0%
! GATACTTGCTTTGCAAGTTT+TGG + chr3_1:26116421-26116440 Msa0354540:CDS 35.0%
TTGGCGATAGAGTGAAAAAT+TGG + chr3_1:26116440-26116459 Msa0354540:CDS 35.0%
! GATCTATTTTCACTTCTTCC+AGG - chr3_1:26116526-26116545 None:intergenic 35.0%
AATAGAAACAGCTTCTGCAT+GGG - chr3_1:26116587-26116606 None:intergenic 35.0%
AAATAGAAACAGCTTCTGCA+TGG - chr3_1:26116588-26116607 None:intergenic 35.0%
TATTTACCGAAGCAAGTACA+AGG + chr3_1:26116603-26116622 Msa0354540:CDS 35.0%
AATGAGAGTAGTTACCATGT+AGG - chr3_1:26116730-26116749 None:intergenic 35.0%
TAAGACTTGCACAATAGTTG+AGG + chr3_1:26116782-26116801 Msa0354540:intron 35.0%
CTTTATTCTCTTGATGTTCC+AGG + chr3_1:26116810-26116829 Msa0354540:intron 35.0%
TCGTGAACACTAGAAATTGA+AGG + chr3_1:26117162-26117181 Msa0354540:intron 35.0%
ACACTAGAAATTGAAGGTTG+AGG + chr3_1:26117168-26117187 Msa0354540:intron 35.0%
AGGTTGAGGATATTTAACCT+TGG + chr3_1:26117182-26117201 Msa0354540:intron 35.0%
GGATAGTCTCCATAATATAG+TGG - chr3_1:26117258-26117277 None:intergenic 35.0%
ACCTCGTTGTATAGTGATTT+AGG - chr3_1:26117371-26117390 None:intergenic 35.0%
CTTGTCGTAATGACATTCTT+CGG - chr3_1:26117418-26117437 None:intergenic 35.0%
GAAAAACAGCTCAATCATCA+AGG - chr3_1:26117518-26117537 None:intergenic 35.0%
!!! AGCTGTTTTTCACAGTTGAA+TGG + chr3_1:26117527-26117546 Msa0354540:intron 35.0%
!!! GCTGTTTTTCACAGTTGAAT+GGG + chr3_1:26117528-26117547 Msa0354540:intron 35.0%
! TTTTTCACAGTTGAATGGGA+AGG + chr3_1:26117532-26117551 Msa0354540:intron 35.0%
AGAAAGTCACATACCATTCT+CGG - chr3_1:26117774-26117793 None:intergenic 35.0%
AACCACTCGATAGAAAATTG+AGG + chr3_1:26117833-26117852 Msa0354540:intron 35.0%
ACCACTCGATAGAAAATTGA+GGG + chr3_1:26117834-26117853 Msa0354540:intron 35.0%
CGAGTGTGAGTTATGTTATA+TGG + chr3_1:26118228-26118247 Msa0354540:intron 35.0%
CAACCTTATGCTATCTAATC+AGG - chr3_1:26118327-26118346 None:intergenic 35.0%
GTCTTTCCATTTAACAGGTA+TGG + chr3_1:26118453-26118472 Msa0354540:intron 35.0%
CATCATCCATACCTGTTAAA+TGG - chr3_1:26118462-26118481 None:intergenic 35.0%
TCATCTAGCATCTCATTTAG+TGG - chr3_1:26118502-26118521 None:intergenic 35.0%
AGGTGTGTTTGAGAAGAAAT+TGG - chr3_1:26118591-26118610 None:intergenic 35.0%
TTATCACACCATATCAGCTA+GGG - chr3_1:26118882-26118901 None:intergenic 35.0%
ATTATCACACCATATCAGCT+AGG - chr3_1:26118883-26118902 None:intergenic 35.0%
! TGACGGACATATGGATATTA+AGG - chr3_1:26119015-26119034 None:intergenic 35.0%
ATGCTGGTGAAAACTGTATT+TGG - chr3_1:26119281-26119300 None:intergenic 35.0%
GATCAGTTGTTATGTTATGC+TGG - chr3_1:26119297-26119316 None:intergenic 35.0%
ATTACTGGACAACTTCGAAT+GGG + chr3_1:26119436-26119455 Msa0354540:CDS 35.0%
CAAGGTTATACCAAACGTTT+CGG + chr3_1:26119461-26119480 Msa0354540:CDS 35.0%
TTATACCAAACGTTTCGGAT+TGG + chr3_1:26119466-26119485 Msa0354540:CDS 35.0%
! ATTACAAAAATGGACTCACC+AGG + chr3_1:26119498-26119517 Msa0354540:CDS 35.0%
! TTTTCGCGGTTTCTTAAAGA+TGG + chr3_1:26119545-26119564 Msa0354540:CDS 35.0%
TTTCGCGGTTTCTTAAAGAT+GGG + chr3_1:26119546-26119565 Msa0354540:CDS 35.0%
!! AGAGAAAACGGCTTTGAGAA+AGG + chr3_1:26113239-26113258 Msa0354540:CDS 40.0%
AAGTACCTGATAAGCAGAAG+TGG - chr3_1:26113318-26113337 None:intergenic 40.0%
CGGGCAACAGTTAAAAACAT+AGG - chr3_1:26113985-26114004 None:intergenic 40.0%
!! GGTATTGGTAGGCGATTATA+TGG + chr3_1:26114015-26114034 Msa0354540:intron 40.0%
!! ATAGATAGAAGGTGCTAGCA+AGG + chr3_1:26114084-26114103 Msa0354540:intron 40.0%
TGGTAGAGGTCCTAGTATAT+GGG + chr3_1:26114111-26114130 Msa0354540:CDS 40.0%
GATGCCTATGCTTATACTGA+AGG + chr3_1:26114133-26114152 Msa0354540:CDS 40.0%
GTATGCCAATTGTCTAGCAT+TGG + chr3_1:26114328-26114347 Msa0354540:intron 40.0%
!! AATGTTGCTTTACAGGAGAC+TGG + chr3_1:26114490-26114509 Msa0354540:intron 40.0%
!! GGAGGAGTTGATAAACTTCT+AGG - chr3_1:26114849-26114868 None:intergenic 40.0%
AAATTGCACTCTCTCCTATC+TGG - chr3_1:26115091-26115110 None:intergenic 40.0%
AAATGAAGCAGGGAATACAC+AGG + chr3_1:26115184-26115203 Msa0354540:intron 40.0%
GAATACACAGGCTTTACCAT+AGG + chr3_1:26115196-26115215 Msa0354540:intron 40.0%
TAACAAACTAGCCATGTAGC+AGG - chr3_1:26115567-26115586 None:intergenic 40.0%
! ACTCTGTAGTGTGAGAGTAT+GGG - chr3_1:26115600-26115619 None:intergenic 40.0%
AACTCTGTAGTGTGAGAGTA+TGG - chr3_1:26115601-26115620 None:intergenic 40.0%
TTTATGGGTGTAGATGGCTT+AGG + chr3_1:26115825-26115844 Msa0354540:intron 40.0%
GGAACCAATGTCAATGATGA+AGG + chr3_1:26115846-26115865 Msa0354540:CDS 40.0%
! ATTGACTCATCAAGATGCAG+TGG - chr3_1:26116032-26116051 None:intergenic 40.0%
ACTGCATCTTGATGAGTCAA+TGG + chr3_1:26116031-26116050 Msa0354540:CDS 40.0%
CTGCATCTTGATGAGTCAAT+GGG + chr3_1:26116032-26116051 Msa0354540:CDS 40.0%
TTGGCATCAGATACTTCGTA+AGG - chr3_1:26116250-26116269 None:intergenic 40.0%
CTGAATGCAGTGTACATATG+TGG + chr3_1:26116366-26116385 Msa0354540:intron 40.0%
! TGATGATGTGCTGCTAAGTA+TGG - chr3_1:26116556-26116575 None:intergenic 40.0%
AGCAGCACATCATCAAATCT+TGG + chr3_1:26116561-26116580 Msa0354540:CDS 40.0%
GTTTGACCTTGTACTTGCTT+CGG - chr3_1:26116612-26116631 None:intergenic 40.0%
TTGATGTTCCAGGATAAGCA+AGG + chr3_1:26116820-26116839 Msa0354540:intron 40.0%
TGATGTTCCAGGATAAGCAA+GGG + chr3_1:26116821-26116840 Msa0354540:intron 40.0%
! AGACACCTAGATTTTCGTCT+TGG + chr3_1:26116922-26116941 Msa0354540:CDS 40.0%
GTGTGGACACAAACTTACAA+AGG + chr3_1:26117034-26117053 Msa0354540:intron 40.0%
CTCAAAACAGCAAAAGGTCT+TGG + chr3_1:26117125-26117144 Msa0354540:intron 40.0%
!! ATATAGTGGATGCAAGAACC+TGG - chr3_1:26117244-26117263 None:intergenic 40.0%
TTATCCTCCTCCGAGAATTT+GGG - chr3_1:26117315-26117334 None:intergenic 40.0%
TTTATCCTCCTCCGAGAATT+TGG - chr3_1:26117316-26117335 None:intergenic 40.0%
GCCTAAATCACTATACAACG+AGG + chr3_1:26117367-26117386 Msa0354540:CDS 40.0%
CGAAGAATGTCATTACGACA+AGG + chr3_1:26117416-26117435 Msa0354540:CDS 40.0%
TACCATCTATGTCTCTCTGT+CGG + chr3_1:26117582-26117601 Msa0354540:intron 40.0%
AGTGGCTATATGTTGTTCCT+TGG + chr3_1:26117690-26117709 Msa0354540:CDS 40.0%
GTGGCTATATGTTGTTCCTT+GGG + chr3_1:26117691-26117710 Msa0354540:CDS 40.0%
TGGCTATATGTTGTTCCTTG+GGG + chr3_1:26117692-26117711 Msa0354540:CDS 40.0%
CCATTCTCGGTGACATATAT+CGG - chr3_1:26117761-26117780 None:intergenic 40.0%
! TCCCTCAATTTTCTATCGAG+TGG - chr3_1:26117838-26117857 None:intergenic 40.0%
!! TTGGTTCTACACAAATGGGT+TGG - chr3_1:26118031-26118050 None:intergenic 40.0%
AAACGATAGAAGGGGACAAA+AGG - chr3_1:26118072-26118091 None:intergenic 40.0%
!! TATTTTGAGAGCTGCAACCT+AGG + chr3_1:26118279-26118298 Msa0354540:intron 40.0%
TATGTCAACAATAGGATCCG+CGG + chr3_1:26118351-26118370 Msa0354540:intron 40.0%
CATCTATTAAATCAGAGCCG+CGG - chr3_1:26118371-26118390 None:intergenic 40.0%
AGGCTGTCTTTCCATTTAAC+AGG + chr3_1:26118448-26118467 Msa0354540:intron 40.0%
AGAACGATTACTTGTGCAAC+AGG - chr3_1:26118810-26118829 None:intergenic 40.0%
TAGTCTTTCCCTAGCTGATA+TGG + chr3_1:26118871-26118890 Msa0354540:intron 40.0%
!! CTTGTTTAGTGACGGACATA+TGG - chr3_1:26119024-26119043 None:intergenic 40.0%
TTAGAACAGGGTCAGAAACT+TGG + chr3_1:26119150-26119169 Msa0354540:intron 40.0%
ATCATTTGAATGCACAGGGA+TGG + chr3_1:26119383-26119402 Msa0354540:intron 40.0%
ACACTTTGCATGGTCATTAC+TGG + chr3_1:26119421-26119440 Msa0354540:CDS 40.0%
CATTACTGGACAACTTCGAA+TGG + chr3_1:26119435-26119454 Msa0354540:CDS 40.0%
ATAGACCAATCCGAAACGTT+TGG - chr3_1:26119474-26119493 None:intergenic 40.0%
ACCAATACGCAGAAGACTTT+GGG - chr3_1:26119526-26119545 None:intergenic 40.0%
AACCAATACGCAGAAGACTT+TGG - chr3_1:26119527-26119546 None:intergenic 40.0%
TTCGCGGTTTCTTAAAGATG+GGG + chr3_1:26119547-26119566 Msa0354540:CDS 40.0%
TCTTAAAGATGGGGCAAACA+AGG + chr3_1:26119556-26119575 Msa0354540:CDS 40.0%
CTTAAAGATGGGGCAAACAA+GGG + chr3_1:26119557-26119576 Msa0354540:CDS 40.0%
TTCCCTTCTGACTTCGTCTT+CGG + chr3_1:26113287-26113306 Msa0354540:CDS 45.0%
ACTGTTGCCCGAATGAGTAA+TGG + chr3_1:26113994-26114013 Msa0354540:intron 45.0%
GCCCGAATGAGTAATGGTAT+TGG + chr3_1:26114000-26114019 Msa0354540:intron 45.0%
!! ATAGAAGGTGCTAGCAAGGA+GGG + chr3_1:26114088-26114107 Msa0354540:CDS 45.0%
GTGGTAGAGGTCCTAGTATA+TGG + chr3_1:26114110-26114129 Msa0354540:CDS 45.0%
GCATAGGCATCCCATATACT+AGG - chr3_1:26114124-26114143 None:intergenic 45.0%
!! GTAAGCGTTGAAACCCAACT+TGG - chr3_1:26114700-26114719 None:intergenic 45.0%
! TCTTGGTCTCGTATTTTCCC+TGG + chr3_1:26114732-26114751 Msa0354540:CDS 45.0%
TTCTAGGCTTAAGGCTCTCA+TGG - chr3_1:26114833-26114852 None:intergenic 45.0%
ACTCCTCCGTCATCAATACT+TGG + chr3_1:26114861-26114880 Msa0354540:intron 45.0%
!! TGACCAAGTATTGATGACGG+AGG - chr3_1:26114867-26114886 None:intergenic 45.0%
! TTTCTGGGAGGGAATTGCTT+TGG + chr3_1:26114960-26114979 Msa0354540:intron 45.0%
! TTTTCGTCTTACCGCCAGAT+AGG + chr3_1:26115074-26115093 Msa0354540:intron 45.0%
CACAGGCTTTACCATAGGAA+AGG + chr3_1:26115201-26115220 Msa0354540:intron 45.0%
! GGTAAAGGTTTGGAGCCATT+TGG - chr3_1:26115494-26115513 None:intergenic 45.0%
! CTCTGTAGTGTGAGAGTATG+GGG - chr3_1:26115599-26115618 None:intergenic 45.0%
CATCTTGATGAGTCAATGGG+AGG + chr3_1:26116035-26116054 Msa0354540:CDS 45.0%
TTGATGAGTCAATGGGAGGA+TGG + chr3_1:26116039-26116058 Msa0354540:CDS 45.0%
GATGTTCCAGGATAAGCAAG+GGG + chr3_1:26116822-26116841 Msa0354540:intron 45.0%
ATGTTCCAGGATAAGCAAGG+GGG + chr3_1:26116823-26116842 Msa0354540:intron 45.0%
GCTGGTTGTAGACTCTGAAT+GGG + chr3_1:26116855-26116874 Msa0354540:CDS 45.0%
! ACCTAGATTTTCGTCTTGGC+TGG + chr3_1:26116926-26116945 Msa0354540:CDS 45.0%
ACCAGCCAAGACGAAAATCT+AGG - chr3_1:26116930-26116949 None:intergenic 45.0%
AGTCGTTCACGCATAACTTC+AGG - chr3_1:26117279-26117298 None:intergenic 45.0%
GAAGTTATGCGTGAACGACT+TGG + chr3_1:26117279-26117298 Msa0354540:CDS 45.0%
! AGACCGACTTCCCAAATTCT+CGG + chr3_1:26117302-26117321 Msa0354540:CDS 45.0%
TTACGACAAGGCACAACAGT+TGG + chr3_1:26117428-26117447 Msa0354540:CDS 45.0%
GCACAACAGTTGGACAGAAT+TGG + chr3_1:26117438-26117457 Msa0354540:CDS 45.0%
TTCACAGTTGAATGGGAAGG+CGG + chr3_1:26117535-26117554 Msa0354540:intron 45.0%
TATAACAGGCAGCATCAGAG+TGG + chr3_1:26117672-26117691 Msa0354540:intron 45.0%
ATGTTGTTCCTTGGGGTCTT+CGG + chr3_1:26117699-26117718 Msa0354540:CDS 45.0%
ATAATCTTCCGAAGACCCCA+AGG - chr3_1:26117710-26117729 None:intergenic 45.0%
CCGATATATGTCACCGAGAA+TGG + chr3_1:26117758-26117777 Msa0354540:CDS 45.0%
CTGCAACCTAGGAATATGAC+TGG + chr3_1:26118290-26118309 Msa0354540:intron 45.0%
ACCTAGGAATATGACTGGCA+TGG + chr3_1:26118295-26118314 Msa0354540:intron 45.0%
ACTGCGAGTTCGCTATTACA+AGG + chr3_1:26118525-26118544 Msa0354540:CDS 45.0%
CTGCGAGTTCGCTATTACAA+GGG + chr3_1:26118526-26118545 Msa0354540:CDS 45.0%
ATATCTTGCATCACTTGCGC+AGG + chr3_1:26118549-26118568 Msa0354540:CDS 45.0%
ATGTGAGAGGACACTTTGCA+TGG + chr3_1:26119411-26119430 Msa0354540:CDS 45.0%
ACCCAAAGTCTTCTGCGTAT+TGG + chr3_1:26119522-26119541 Msa0354540:CDS 45.0%
!!! CTTCTGCGTATTGGTTTTCG+CGG + chr3_1:26119531-26119550 Msa0354540:CDS 45.0%
!! AAAAAAAAAAAATAACTAAA+AGG - chr3_1:26113539-26113558 None:intergenic 5.0%
!! AAATTAATTAAATAAAAAGA+TGG - chr3_1:26113574-26113593 None:intergenic 5.0%
CTCCGAAGACGAAGTCAGAA+GGG - chr3_1:26113292-26113311 None:intergenic 50.0%
ACTCCGAAGACGAAGTCAGA+AGG - chr3_1:26113293-26113312 None:intergenic 50.0%
AGTCGCCACTTCTGCTTATC+AGG + chr3_1:26113310-26113329 Msa0354540:CDS 50.0%
!! GATAGAAGGTGCTAGCAAGG+AGG + chr3_1:26114087-26114106 Msa0354540:intron 50.0%
! GTAGCTGACTCAACCAAGTG+AGG + chr3_1:26114397-26114416 Msa0354540:intron 50.0%
CTGTCAAGATCATGTCGTGC+AGG + chr3_1:26114612-26114631 Msa0354540:intron 50.0%
GCTTAAGGCTCTCATGGACA+TGG - chr3_1:26114827-26114846 None:intergenic 50.0%
CTTTGGCCCAACCGATAAGA+TGG + chr3_1:26114977-26114996 Msa0354540:intron 50.0%
TTGCACTCTCTCCTATCTGG+CGG - chr3_1:26115088-26115107 None:intergenic 50.0%
! GGTTTGGAGCCATTTGGCTT+GGG - chr3_1:26115488-26115507 None:intergenic 50.0%
! AGGTTTGGAGCCATTTGGCT+TGG - chr3_1:26115489-26115508 None:intergenic 50.0%
GATGCAGTGGAAGATCCCAA+TGG - chr3_1:26116019-26116038 None:intergenic 50.0%
AGCATCATACCCACCAACTG+CGG - chr3_1:26116491-26116510 None:intergenic 50.0%
GATGCTGGAGTTAATGCTCC+TGG + chr3_1:26116505-26116524 Msa0354540:CDS 50.0%
GATAAGCAAGGGGGACAAGT+GGG + chr3_1:26116832-26116851 Msa0354540:CDS 50.0%
ATAAGCAAGGGGGACAAGTG+GGG + chr3_1:26116833-26116852 Msa0354540:CDS 50.0%
! GGCTGGTTGTAGACTCTGAA+TGG + chr3_1:26116854-26116873 Msa0354540:CDS 50.0%
CCTCCGAGAATTTGGGAAGT+CGG - chr3_1:26117308-26117327 None:intergenic 50.0%
ACTTCCCAAATTCTCGGAGG+AGG + chr3_1:26117308-26117327 Msa0354540:CDS 50.0%
TCACAGTTGAATGGGAAGGC+GGG + chr3_1:26117536-26117555 Msa0354540:intron 50.0%
CACCGACAGAGAGACATAGA+TGG - chr3_1:26117587-26117606 None:intergenic 50.0%
GCCATGCCAGTCATATTCCT+AGG - chr3_1:26118299-26118318 None:intergenic 50.0%
! GACAACTTCGAATGGGCTCA+AGG + chr3_1:26119443-26119462 Msa0354540:CDS 50.0%
ACCAAGCAACTGAGCTCAAG+TGG + chr3_1:26119794-26119813 Msa0354540:three_prime_UTR 50.0%
ACCACTTGAGCTCAGTTGCT+TGG - chr3_1:26119798-26119817 None:intergenic 50.0%
!! CCATTTGGCTTGGGAGGTTC+CGG - chr3_1:26115479-26115498 None:intergenic 55.0%
!! TTGGAGCCATTTGGCTTGGG+AGG - chr3_1:26115485-26115504 None:intergenic 55.0%
CCACCAACTGCGGTTTGAAG+GGG - chr3_1:26116481-26116500 None:intergenic 55.0%
CCCACCAACTGCGGTTTGAA+GGG - chr3_1:26116482-26116501 None:intergenic 55.0%
CCCTTCAAACCGCAGTTGGT+GGG + chr3_1:26116479-26116498 Msa0354540:CDS 55.0%
ACCCACCAACTGCGGTTTGA+AGG - chr3_1:26116483-26116502 None:intergenic 55.0%
!! GCAGTTGGTGGGTATGATGC+TGG + chr3_1:26116490-26116509 Msa0354540:CDS 55.0%
CTTGTCCCCCTTGCTTATCC+TGG - chr3_1:26116831-26116850 None:intergenic 55.0%
GGATAAGCAAGGGGGACAAG+TGG + chr3_1:26116831-26116850 Msa0354540:intron 55.0%
ATCTAGGTGTCTCGCAGCAG+CGG - chr3_1:26116914-26116933 None:intergenic 55.0%
CCGACTTCCCAAATTCTCGG+AGG + chr3_1:26117305-26117324 Msa0354540:CDS 55.0%
CACAGTTGAATGGGAAGGCG+GGG + chr3_1:26117537-26117556 Msa0354540:intron 55.0%
AGGGATGGAGCTGATGTGAG+AGG + chr3_1:26119398-26119417 Msa0354540:intron 55.0%
!! GAAGGTGCTAGCAAGGAGGG+TGG + chr3_1:26114091-26114110 Msa0354540:CDS 60.0%
GCTAGCAAGGAGGGTGGTAG+AGG + chr3_1:26114097-26114116 Msa0354540:CDS 60.0%
!! TTGGCTTGGGAGGTTCCGGA+TGG - chr3_1:26115475-26115494 None:intergenic 60.0%
CCGGAACCTCCCAAGCCAAA+TGG + chr3_1:26115476-26115495 Msa0354540:intron 60.0%
GAGCCCCTTCAAACCGCAGT+TGG + chr3_1:26116475-26116494 Msa0354540:CDS 60.0%
CCCCTTCAAACCGCAGTTGG+TGG + chr3_1:26116478-26116497 Msa0354540:CDS 60.0%
CGGGGAGCTCATTGGTGAGA+AGG + chr3_1:26117555-26117574 Msa0354540:CDS 60.0%
CGCAGAAGACTTTGGGTGCC+TGG - chr3_1:26119519-26119538 None:intergenic 60.0%
TGGGAAGGCGGGGAGCTCAT+TGG + chr3_1:26117547-26117566 Msa0354540:CDS 65.0%
GCAAGGGGGACAAGTGGGGC+TGG + chr3_1:26116837-26116856 Msa0354540:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 26113215 26119820 26113215 ID=Msa0354540;Name=Msa0354540
chr3_1 mRNA 26113215 26119820 26113215 ID=Msa0354540-mRNA-1;Parent=Msa0354540;Name=Msa0354540-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0.92|0.85|1|0.92|0.85|14|211|490
chr3_1 exon 26113215 26113331 26113215 ID=Msa0354540-mRNA-1:exon:5758;Parent=Msa0354540-mRNA-1
chr3_1 exon 26114088 26114154 26114088 ID=Msa0354540-mRNA-1:exon:5759;Parent=Msa0354540-mRNA-1
chr3_1 exon 26114236 26114294 26114236 ID=Msa0354540-mRNA-1:exon:5760;Parent=Msa0354540-mRNA-1
chr3_1 exon 26114678 26114753 26114678 ID=Msa0354540-mRNA-1:exon:5761;Parent=Msa0354540-mRNA-1
chr3_1 exon 26115838 26115912 26115838 ID=Msa0354540-mRNA-1:exon:5762;Parent=Msa0354540-mRNA-1
chr3_1 exon 26115991 26116078 26115991 ID=Msa0354540-mRNA-1:exon:5763;Parent=Msa0354540-mRNA-1
chr3_1 exon 26116399 26116624 26116399 ID=Msa0354540-mRNA-1:exon:5764;Parent=Msa0354540-mRNA-1
chr3_1 exon 26116832 26116947 26116832 ID=Msa0354540-mRNA-1:exon:5765;Parent=Msa0354540-mRNA-1
chr3_1 exon 26117245 26117459 26117245 ID=Msa0354540-mRNA-1:exon:5766;Parent=Msa0354540-mRNA-1
chr3_1 exon 26117542 26117576 26117542 ID=Msa0354540-mRNA-1:exon:5767;Parent=Msa0354540-mRNA-1
chr3_1 exon 26117680 26117779 26117680 ID=Msa0354540-mRNA-1:exon:5768;Parent=Msa0354540-mRNA-1
chr3_1 exon 26118470 26118578 26118470 ID=Msa0354540-mRNA-1:exon:5769;Parent=Msa0354540-mRNA-1
chr3_1 exon 26119400 26119691 26119400 ID=Msa0354540-mRNA-1:exon:5770;Parent=Msa0354540-mRNA-1
chr3_1 exon 26119712 26119820 26119712 ID=Msa0354540-mRNA-1:exon:5771;Parent=Msa0354540-mRNA-1
chr3_1 CDS 26113215 26113331 26113215 ID=Msa0354540-mRNA-1:cds;Parent=Msa0354540-mRNA-1
chr3_1 CDS 26114088 26114154 26114088 ID=Msa0354540-mRNA-1:cds;Parent=Msa0354540-mRNA-1
chr3_1 CDS 26114236 26114294 26114236 ID=Msa0354540-mRNA-1:cds;Parent=Msa0354540-mRNA-1
chr3_1 CDS 26114678 26114753 26114678 ID=Msa0354540-mRNA-1:cds;Parent=Msa0354540-mRNA-1
chr3_1 CDS 26115838 26115912 26115838 ID=Msa0354540-mRNA-1:cds;Parent=Msa0354540-mRNA-1
chr3_1 CDS 26115991 26116078 26115991 ID=Msa0354540-mRNA-1:cds;Parent=Msa0354540-mRNA-1
chr3_1 CDS 26116399 26116624 26116399 ID=Msa0354540-mRNA-1:cds;Parent=Msa0354540-mRNA-1
chr3_1 CDS 26116832 26116947 26116832 ID=Msa0354540-mRNA-1:cds;Parent=Msa0354540-mRNA-1
chr3_1 CDS 26117245 26117459 26117245 ID=Msa0354540-mRNA-1:cds;Parent=Msa0354540-mRNA-1
chr3_1 CDS 26117542 26117576 26117542 ID=Msa0354540-mRNA-1:cds;Parent=Msa0354540-mRNA-1
chr3_1 CDS 26117680 26117779 26117680 ID=Msa0354540-mRNA-1:cds;Parent=Msa0354540-mRNA-1
chr3_1 CDS 26118470 26118578 26118470 ID=Msa0354540-mRNA-1:cds;Parent=Msa0354540-mRNA-1
chr3_1 CDS 26119400 26119589 26119400 ID=Msa0354540-mRNA-1:cds;Parent=Msa0354540-mRNA-1
chr3_1 three_prime_UTR 26119590 26119691 26119590 ID=Msa0354540-mRNA-1:three_prime_utr;Parent=Msa0354540-mRNA-1
chr3_1 three_prime_UTR 26119712 26119820 26119712 ID=Msa0354540-mRNA-1:three_prime_utr;Parent=Msa0354540-mRNA-1
Gene Sequence

>Msa0354540

ATGGTAAAGAAAGAAGAATTCATGAGAGAAAACGGCTTTGAGAAAGGACAAGCAGAAGTCTCACGCAGTGACTTCCCTTCTGACTTCGTCTTCGGAGTCGCCACTTCTGCTTATCAGATAGAAGGTGCTAGCAAGGAGGGTGGTAGAGGTCCTAGTATATGGGATGCCTATGCTTATACTGAAGGAAAAATACTCGACAAAAGCAATGGCGATGTAGCAGTTGATCATTATCATCGTTATAAGGAAGATATTGATCTTATAGCCAAGTTGGGTTTCAACGCTTACAGATTTTCAATTTCTTGGTCTCGTATTTTCCCTGATGGCTTAGGAACCAATGTCAATGATGAAGGCATAACATTTTACAACAACATTATCAATGCTCTTCTTGAAAAAGGTATTCAACCTTTTGTAACTTTGTACCATTGGGATCTTCCACTGCATCTTGATGAGTCAATGGGAGGATGGTTGAATAAAAATATCATAGAATATTTTGCAGTCTATGCAGATACTTGCTTTGCAAGTTTTGGCGATAGAGTGAAAAATTGGATTACTATTAACGAGCCCCTTCAAACCGCAGTTGGTGGGTATGATGCTGGAGTTAATGCTCCTGGAAGAAGTGAAAATAGATCAGTAGAACCATACTTAGCAGCACATCATCAAATCTTGGCCCATGCAGAAGCTGTTTCTATTTACCGAAGCAAGTACAAGGATAAGCAAGGGGGACAAGTGGGGCTGGTTGTAGACTCTGAATGGGCAGAGCCAAACTCTGATAAGATTGAAGATAAATCCGCTGCTGCGAGACACCTAGATTTTCGTCTTGGCTGGTTCTTGCATCCACTATATTATGGAGACTATCCTGAAGTTATGCGTGAACGACTTGGAGACCGACTTCCCAAATTCTCGGAGGAGGATAAAAAATTTCTTTTGAATTCTTTGGACTTCATTGGCCTAAATCACTATACAACGAGGTTAATTTCACATGTGACAGAAAGCACCGAAGAATGTCATTACGACAAGGCACAACAGTTGGACAGAATTGTTGAATGGGAAGGCGGGGAGCTCATTGGTGAGAAGGCAGCATCAGAGTGGCTATATGTTGTTCCTTGGGGTCTTCGGAAGATTATTAATTACATATCGCAAAAATATGCTGCACCGATATATGTCACCGAGAATGGTATGGATGATGAAGACAATGATAGCTTGCCACTAAATGAGATGCTAGATGACAAACTGCGAGTTCGCTATTACAAGGGATATCTTGCATCACTTGCGCAGGCTATAAAGGATGGAGCTGATGTGAGAGGACACTTTGCATGGTCATTACTGGACAACTTCGAATGGGCTCAAGGTTATACCAAACGTTTCGGATTGGTCTATGTAGATTACAAAAATGGACTCACCAGGCACCCAAAGTCTTCTGCGTATTGGTTTTCGCGGTTTCTTAAAGATGGGGCAAACAAGGGTAAAGAATAG
Protein sequence

>Msa0354540

MVKKEEFMRENGFEKGQAEVSRSDFPSDFVFGVATSAYQIEGASKEGGRGPSIWDAYAYTEGKILDKSNGDVAVDHYHRYKEDIDLIAKLGFNAYRFSISWSRIFPDGLGTNVNDEGITFYNNIINALLEKGIQPFVTLYHWDLPLHLDESMGGWLNKNIIEYFAVYADTCFASFGDRVKNWITINEPLQTAVGGYDAGVNAPGRSENRSVEPYLAAHHQILAHAEAVSIYRSKYKDKQGGQVGLVVDSEWAEPNSDKIEDKSAAARHLDFRLGWFLHPLYYGDYPEVMRERLGDRLPKFSEEDKKFLLNSLDFIGLNHYTTRLISHVTESTEECHYDKAQQLDRIVEWEGGELIGEKAASEWLYVVPWGLRKIINYISQKYAAPIYVTENGMDDEDNDSLPLNEMLDDKLRVRYYKGYLASLAQAIKDGADVRGHFAWSLLDNFEWAQGYTKRFGLVYVDYKNGLTRHPKSSAYWFSRFLKDGANKGKE*