Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0968180 | sp|P17772|OSS2_PEA | 46.429 | 196 | 70 | 3 | 15 | 208 | 17 | 179 | 6.15e-46 | 158 |
| Msa0968180 | sp|P17772|OSS2_PEA | 63.333 | 120 | 44 | 0 | 243 | 362 | 62 | 181 | 9.83e-44 | 152 |
| Msa0968180 | sp|P17772|OSS2_PEA | 46.471 | 170 | 84 | 2 | 143 | 312 | 17 | 179 | 3.17e-41 | 145 |
| Msa0968180 | sp|P17772|OSS2_PEA | 58.871 | 124 | 47 | 1 | 215 | 338 | 60 | 179 | 2.50e-39 | 140 |
| Msa0968180 | sp|P17772|OSS2_PEA | 53.226 | 124 | 54 | 1 | 137 | 260 | 60 | 179 | 9.43e-35 | 129 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0968180 | G7J6J7 | 85.429 | 350 | 42 | 3 | 16 | 362 | 16 | 359 | 0.0 | 553 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000370 | Msa0968180 | 0.874582 | 6.034318e-68 | -8.615850e-47 |
| Msa0013270 | Msa0968180 | 0.842057 | 3.262399e-58 | -8.615850e-47 |
| Msa0038530 | Msa0968180 | 0.813861 | 2.065748e-51 | -8.615850e-47 |
| Msa0045810 | Msa0968180 | 0.847295 | 1.266027e-59 | -8.615850e-47 |
| Msa0046200 | Msa0968180 | 0.832048 | 1.180297e-55 | -8.615850e-47 |
| Msa0062190 | Msa0968180 | 0.818359 | 2.042894e-52 | -8.615850e-47 |
| Msa0072180 | Msa0968180 | 0.817625 | 2.992113e-52 | -8.615850e-47 |
| Msa0073110 | Msa0968180 | 0.804076 | 2.569203e-49 | -8.615850e-47 |
| Msa0106540 | Msa0968180 | 0.848575 | 5.616180e-60 | -8.615850e-47 |
| Msa0120450 | Msa0968180 | 0.827583 | 1.443843e-54 | -8.615850e-47 |
| Msa0604190 | Msa0968180 | 0.803360 | 3.618492e-49 | -8.615850e-47 |
| Msa0605480 | Msa0968180 | 0.832734 | 7.984713e-56 | -8.615850e-47 |
| Msa0606600 | Msa0968180 | 0.811857 | 5.675125e-51 | -8.615850e-47 |
| Msa0618700 | Msa0968180 | 0.803527 | 3.341746e-49 | -8.615850e-47 |
| Msa0645370 | Msa0968180 | 0.802948 | 4.402645e-49 | -8.615850e-47 |
| Msa0645390 | Msa0968180 | 0.804300 | 2.308392e-49 | -8.615850e-47 |
| Msa0646010 | Msa0968180 | 0.839462 | 1.562256e-57 | -8.615850e-47 |
| Msa0646430 | Msa0968180 | 0.839110 | 1.927747e-57 | -8.615850e-47 |
| Msa0646440 | Msa0968180 | 0.836990 | 6.766799e-57 | -8.615850e-47 |
| Msa0647300 | Msa0968180 | 0.810027 | 1.413344e-50 | -8.615850e-47 |
| Msa0657710 | Msa0968180 | 0.841708 | 4.033374e-58 | -8.615850e-47 |
| Msa0658150 | Msa0968180 | 0.800293 | 1.542693e-48 | -8.615850e-47 |
| Msa0660090 | Msa0968180 | 0.803137 | 4.023542e-49 | -8.615850e-47 |
| Msa0686040 | Msa0968180 | 0.841826 | 3.754846e-58 | -8.615850e-47 |
| Msa0686830 | Msa0968180 | 0.816127 | 6.492027e-52 | -8.615850e-47 |
| Msa0694790 | Msa0968180 | 0.802192 | 6.303191e-49 | -8.615850e-47 |
| Msa0702790 | Msa0968180 | 0.803966 | 2.708587e-49 | -8.615850e-47 |
| Msa0702800 | Msa0968180 | 0.847224 | 1.323729e-59 | -8.615850e-47 |
| Msa0703000 | Msa0968180 | 0.801106 | 1.053103e-48 | -8.615850e-47 |
| Msa0707330 | Msa0968180 | 0.800133 | 1.662460e-48 | -8.615850e-47 |
| Msa0708020 | Msa0968180 | 0.816750 | 4.707433e-52 | -8.615850e-47 |
| Msa0716980 | Msa0968180 | 0.813474 | 2.512849e-51 | -8.615850e-47 |
| Msa0735010 | Msa0968180 | 0.831543 | 1.572690e-55 | -8.615850e-47 |
| Msa0745140 | Msa0968180 | 0.803987 | 2.681515e-49 | -8.615850e-47 |
| Msa0758990 | Msa0968180 | 0.809853 | 1.540794e-50 | -8.615850e-47 |
| Msa0775350 | Msa0968180 | 0.811132 | 8.156618e-51 | -8.615850e-47 |
| Msa0776640 | Msa0968180 | 0.805345 | 1.396383e-49 | -8.615850e-47 |
| Msa0800120 | Msa0968180 | 0.803832 | 2.887621e-49 | -8.615850e-47 |
| Msa0812720 | Msa0968180 | 0.822041 | 2.928377e-53 | -8.615850e-47 |
| Msa0819310 | Msa0968180 | 0.826176 | 3.131294e-54 | -8.615850e-47 |
| Msa0825920 | Msa0968180 | 0.809679 | 1.679666e-50 | -8.615850e-47 |
| Msa0828960 | Msa0968180 | 0.845372 | 4.232148e-59 | -8.615850e-47 |
| Msa0838210 | Msa0968180 | 0.808837 | 2.544851e-50 | -8.615850e-47 |
| Msa0132700 | Msa0968180 | 0.826035 | 3.383580e-54 | -8.615850e-47 |
| Msa0139500 | Msa0968180 | 0.823236 | 1.543893e-53 | -8.615850e-47 |
| Msa0183710 | Msa0968180 | 0.804234 | 2.381748e-49 | -8.615850e-47 |
| Msa0188560 | Msa0968180 | 0.808084 | 3.684798e-50 | -8.615850e-47 |
| Msa0189720 | Msa0968180 | 0.820256 | 7.550902e-53 | -8.615850e-47 |
| Msa0203080 | Msa0968180 | 0.801320 | 9.520529e-49 | -8.615850e-47 |
| Msa0203880 | Msa0968180 | 0.813812 | 2.117201e-51 | -8.615850e-47 |
| Msa0206370 | Msa0968180 | 0.843010 | 1.821806e-58 | -8.615850e-47 |
| Msa0211460 | Msa0968180 | 0.815794 | 7.701372e-52 | -8.615850e-47 |
| Msa0230920 | Msa0968180 | 0.819919 | 9.016625e-53 | -8.615850e-47 |
| Msa0232100 | Msa0968180 | 0.816109 | 6.549697e-52 | -8.615850e-47 |
| Msa0380110 | Msa0968180 | 0.808784 | 2.611847e-50 | -8.615850e-47 |
| Msa0386540 | Msa0968180 | 0.827616 | 1.417913e-54 | -8.615850e-47 |
| Msa0386560 | Msa0968180 | 0.965013 | 4.662339e-124 | -8.615850e-47 |
| Msa0387930 | Msa0968180 | 0.830831 | 2.353518e-55 | -8.615850e-47 |
| Msa0437480 | Msa0968180 | 0.827886 | 1.221425e-54 | -8.615850e-47 |
| Msa0440350 | Msa0968180 | 0.800511 | 1.392788e-48 | -8.615850e-47 |
| Msa0467170 | Msa0968180 | 0.804433 | 2.165276e-49 | -8.615850e-47 |
| Msa0477900 | Msa0968180 | 0.800783 | 1.225863e-48 | -8.615850e-47 |
| Msa0481670 | Msa0968180 | 0.833344 | 5.628982e-56 | -8.615850e-47 |
| Msa0247050 | Msa0968180 | 0.827140 | 1.844106e-54 | -8.615850e-47 |
| Msa0248320 | Msa0968180 | 0.817910 | 2.580628e-52 | -8.615850e-47 |
| Msa0258010 | Msa0968180 | 0.823248 | 1.534210e-53 | -8.615850e-47 |
| Msa0278940 | Msa0968180 | 0.801660 | 8.106624e-49 | -8.615850e-47 |
| Msa0285420 | Msa0968180 | 0.801692 | 7.987073e-49 | -8.615850e-47 |
| Msa0298690 | Msa0968180 | 0.806241 | 9.052764e-50 | -8.615850e-47 |
| Msa0310130 | Msa0968180 | 0.803818 | 2.907958e-49 | -8.615850e-47 |
| Msa0318490 | Msa0968180 | 0.810326 | 1.218511e-50 | -8.615850e-47 |
| Msa0333770 | Msa0968180 | 0.824584 | 7.456514e-54 | -8.615850e-47 |
| Msa0336460 | Msa0968180 | 0.825289 | 5.084691e-54 | -8.615850e-47 |
| Msa0354840 | Msa0968180 | 0.827156 | 1.827906e-54 | -8.615850e-47 |
| Msa0356270 | Msa0968180 | 0.814066 | 1.861906e-51 | -8.615850e-47 |
| Msa0487110 | Msa0968180 | 0.830795 | 2.401678e-55 | -8.615850e-47 |
| Msa0523550 | Msa0968180 | 0.991640 | 9.877385e-189 | -8.615850e-47 |
| Msa0523570 | Msa0968180 | 0.802703 | 4.947818e-49 | -8.615850e-47 |
| Msa0540640 | Msa0968180 | 0.804044 | 2.609833e-49 | -8.615850e-47 |
| Msa0549170 | Msa0968180 | 0.800934 | 1.141708e-48 | -8.615850e-47 |
| Msa0549960 | Msa0968180 | 0.844821 | 5.963080e-59 | -8.615850e-47 |
| Msa0549970 | Msa0968180 | 0.841777 | 3.867220e-58 | -8.615850e-47 |
| Msa0556720 | Msa0968180 | 0.808843 | 2.537238e-50 | -8.615850e-47 |
| Msa0565700 | Msa0968180 | 0.812170 | 4.852105e-51 | -8.615850e-47 |
| Msa0567330 | Msa0968180 | 0.868093 | 8.435640e-66 | -8.615850e-47 |
| Msa0567570 | Msa0968180 | 0.864759 | 9.648790e-65 | -8.615850e-47 |
| Msa0576320 | Msa0968180 | 0.866865 | 2.085693e-65 | -8.615850e-47 |
| Msa0851760 | Msa0968180 | 0.802220 | 6.221833e-49 | -8.615850e-47 |
| Msa0853080 | Msa0968180 | 0.812640 | 3.828932e-51 | -8.615850e-47 |
| Msa0880910 | Msa0968180 | 0.857441 | 1.628511e-62 | -8.615850e-47 |
| Msa0882780 | Msa0968180 | 0.812330 | 4.476533e-51 | -8.615850e-47 |
| Msa0909260 | Msa0968180 | 0.863262 | 2.822886e-64 | -8.615850e-47 |
| Msa0910170 | Msa0968180 | 0.803361 | 3.616188e-49 | -8.615850e-47 |
| Msa0931680 | Msa0968180 | 0.803177 | 3.948679e-49 | -8.615850e-47 |
| Msa0967780 | Msa0968180 | 0.849721 | 2.695297e-60 | -8.615850e-47 |
| Msa0968180 | Msa0970270 | 0.803444 | 3.475606e-49 | -8.615850e-47 |
| Msa0968180 | Msa1024480 | 0.807626 | 4.609917e-50 | -8.615850e-47 |
| Msa0968180 | Msa1029820 | 0.853137 | 2.914725e-61 | -8.615850e-47 |
| Msa0968180 | Msa1029840 | 0.803675 | 3.113032e-49 | -8.615850e-47 |
| Msa0968180 | Msa1041060 | 0.827906 | 1.207546e-54 | -8.615850e-47 |
| Msa0968180 | Msa1042300 | 0.823435 | 1.387511e-53 | -8.615850e-47 |
| Msa0968180 | Msa1049400 | 0.816174 | 6.333727e-52 | -8.615850e-47 |
| Msa0968180 | Msa1068730 | 0.818209 | 2.208616e-52 | -8.615850e-47 |
| Msa0968180 | Msa1068940 | 0.858506 | 7.864533e-63 | -8.615850e-47 |
| Msa0968180 | Msa1082410 | 0.801393 | 9.195099e-49 | -8.615850e-47 |
| Msa0968180 | Msa1088320 | 0.834391 | 3.079200e-56 | -8.615850e-47 |
| Msa0968180 | Msa1107520 | 0.807369 | 5.228711e-50 | -8.615850e-47 |
| Msa0968180 | Msa1108560 | 0.804385 | 2.216064e-49 | -8.615850e-47 |
| Msa0968180 | Msa1111910 | 0.842191 | 3.005493e-58 | -8.615850e-47 |
| Msa0968180 | Msa1115900 | 0.811675 | 6.217716e-51 | -8.615850e-47 |
| Msa0968180 | Msa1127200 | 0.818537 | 1.861815e-52 | -8.615850e-47 |
| Msa0968180 | Msa1136050 | 0.817770 | 2.775817e-52 | -8.615850e-47 |
| Msa0968180 | Msa1147010 | 0.818207 | 2.211317e-52 | -8.615850e-47 |
| Msa0968180 | Msa1149910 | 0.811226 | 7.785125e-51 | -8.615850e-47 |
| Msa0968180 | Msa1154320 | 0.805291 | 1.432810e-49 | -8.615850e-47 |
| Msa0968180 | Msa1156710 | 0.851922 | 6.470709e-61 | -8.615850e-47 |
| Msa0968180 | Msa1156730 | 0.806836 | 6.778034e-50 | -8.615850e-47 |
| Msa0968180 | Msa1160540 | 0.833431 | 5.354216e-56 | -8.615850e-47 |
| Msa0968180 | Msa1165460 | 0.831695 | 1.442765e-55 | -8.615850e-47 |
| Msa0968180 | Msa1179180 | 0.801727 | 7.853708e-49 | -8.615850e-47 |
| Msa0968180 | Msa1179190 | 0.830974 | 2.170262e-55 | -8.615850e-47 |
| Msa0968180 | Msa1192360 | 0.817703 | 2.874304e-52 | -8.615850e-47 |
| Msa0968180 | Msa1203650 | 0.809851 | 1.542101e-50 | -8.615850e-47 |
| Msa0968180 | Msa1206920 | 0.871002 | 9.519501e-67 | -8.615850e-47 |
| Msa0968180 | Msa1233620 | 0.821312 | 4.316540e-53 | -8.615850e-47 |
| Msa0968180 | Msa1241960 | 0.815058 | 1.122617e-51 | -8.615850e-47 |
| Msa0968180 | Msa1242130 | 0.821006 | 5.077574e-53 | -8.615850e-47 |
| Msa0968180 | Msa1242160 | 0.847320 | 1.245609e-59 | -8.615850e-47 |
| Msa0968180 | Msa1250610 | 0.822590 | 2.183744e-53 | -8.615850e-47 |
| Msa0968180 | Msa1250660 | 0.845666 | 3.521786e-59 | -8.615850e-47 |
| Msa0968180 | Msa1253520 | 0.804321 | 2.284633e-49 | -8.615850e-47 |
| Msa0968180 | Msa1255710 | 0.833168 | 6.225471e-56 | -8.615850e-47 |
| Msa0968180 | Msa1257200 | 0.876681 | 1.150716e-68 | -8.615850e-47 |
| Msa0968180 | Msa1263110 | 0.818083 | 2.358131e-52 | -8.615850e-47 |
| Msa0968180 | Msa1265570 | 0.800898 | 1.161422e-48 | -8.615850e-47 |
| Msa0968180 | Msa1268360 | 0.804361 | 2.241422e-49 | -8.615850e-47 |
| Msa0968180 | Msa1273320 | 0.828059 | 1.109815e-54 | -8.615850e-47 |
| Msa0968180 | Msa1275930 | 0.819129 | 1.365388e-52 | -8.615850e-47 |
| Msa0968180 | Msa1281780 | 0.822730 | 2.025445e-53 | -8.615850e-47 |
| Msa0968180 | Msa1283930 | 0.855046 | 8.204640e-62 | -8.615850e-47 |
| Msa0968180 | Msa1283960 | 0.800391 | 1.473596e-48 | -8.615850e-47 |
| Msa0968180 | Msa1283980 | 0.831511 | 1.601141e-55 | -8.615850e-47 |
| Msa0968180 | Msa1284020 | 0.854241 | 1.402940e-61 | -8.615850e-47 |
| Msa0968180 | Msa1288070 | 0.814326 | 1.631413e-51 | -8.615850e-47 |
| Msa0968180 | Msa1296860 | 0.811286 | 7.554941e-51 | -8.615850e-47 |
| Msa0968180 | Msa1311370 | 0.806150 | 9.459103e-50 | -8.615850e-47 |
| Msa0968180 | Msa1314020 | 0.813419 | 2.584455e-51 | -8.615850e-47 |
| Msa0968180 | Msa1321010 | 0.807779 | 4.278331e-50 | -8.615850e-47 |
| Msa0968180 | Msa1322500 | 0.806241 | 9.052282e-50 | -8.615850e-47 |
| Msa0968180 | Msa1322960 | 0.857532 | 1.531139e-62 | -8.615850e-47 |
| Msa0968180 | Msa1322980 | 0.836877 | 7.232056e-57 | -8.615850e-47 |
| Msa0968180 | Msa1323070 | 0.810747 | 9.883731e-51 | -8.615850e-47 |
| Msa0968180 | Msa1326640 | 0.821599 | 3.705317e-53 | -8.615850e-47 |
| Msa0968180 | Msa1326680 | 0.821613 | 3.679269e-53 | -8.615850e-47 |
| Msa0968180 | Msa1326710 | 0.812513 | 4.082807e-51 | -8.615850e-47 |
| Msa0968180 | Msa1334670 | 0.804948 | 1.690498e-49 | -8.615850e-47 |
| Msa0968180 | Msa1362590 | 0.809298 | 2.027393e-50 | -8.615850e-47 |
| Msa0968180 | Msa1365230 | 0.801822 | 7.511445e-49 | -8.615850e-47 |
| Msa0968180 | Msa1381010 | 0.991989 | 1.133686e-190 | -8.615850e-47 |
| Msa0968180 | Msa1381030 | 0.834646 | 2.657918e-56 | -8.615850e-47 |
| Msa0968180 | Msa1385260 | 0.817924 | 2.562071e-52 | -8.615850e-47 |
| Msa0968180 | Msa1395080 | 0.802015 | 6.856593e-49 | -8.615850e-47 |
| Msa0968180 | Msa1405830 | 0.848461 | 6.038355e-60 | -8.615850e-47 |
| Msa0968180 | Msa1407810 | 0.872244 | 3.690890e-67 | -8.615850e-47 |
| Msa0968180 | Msa1417220 | 0.817496 | 3.199352e-52 | -8.615850e-47 |
| Msa0968180 | Msa1431030 | 0.800770 | 1.233317e-48 | -8.615850e-47 |
| Msa0968180 | Msa1433360 | 0.865282 | 6.610323e-65 | -8.615850e-47 |
| Msa0968180 | Msa1437780 | 0.871242 | 7.930927e-67 | -8.615850e-47 |
| Msa0968180 | Msa1440430 | 0.837538 | 4.900186e-57 | -8.615850e-47 |
| Msa0968180 | Msa1445530 | 0.858784 | 6.493759e-63 | -8.615850e-47 |
| Msa0968180 | Msa1455360 | 0.800098 | 1.689861e-48 | -8.615850e-47 |
| Msa0968180 | Msa1461660 | 0.804329 | 2.276386e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0968180 | MtrunA17_Chr3g0144471 | 85.429 | 350 | 42 | 3 | 16 | 362 | 16 | 359 | 0.0 | 553 |
| Msa0968180 | MtrunA17_Chr3g0090451 | 64.844 | 384 | 111 | 4 | 1 | 360 | 1 | 384 | 6.52e-148 | 430 |
| Msa0968180 | MtrunA17_Chr3g0090451 | 69.686 | 287 | 80 | 3 | 81 | 361 | 308 | 593 | 7.25e-128 | 379 |
| Msa0968180 | MtrunA17_Chr3g0090451 | 70.070 | 284 | 78 | 2 | 85 | 361 | 258 | 541 | 1.13e-127 | 379 |
| Msa0968180 | MtrunA17_Chr3g0090471 | 53.102 | 403 | 125 | 5 | 16 | 360 | 16 | 412 | 4.35e-124 | 365 |
| Msa0968180 | MtrunA17_Chr3g0090471 | 62.366 | 279 | 99 | 2 | 88 | 360 | 186 | 464 | 1.04e-110 | 331 |
| Msa0968180 | MtrunA17_Chr3g0090471 | 57.770 | 296 | 116 | 4 | 47 | 340 | 178 | 466 | 1.61e-102 | 310 |
| Msa0968180 | MtrunA17_Chr3g0090471 | 54.639 | 97 | 40 | 1 | 269 | 361 | 57 | 153 | 1.41e-20 | 92.8 |
| Msa0968180 | MtrunA17_Chr3g0144461 | 57.702 | 383 | 135 | 6 | 1 | 360 | 1 | 379 | 2.57e-123 | 362 |
| Msa0968180 | MtrunA17_Chr3g0144461 | 56.028 | 282 | 98 | 4 | 81 | 337 | 150 | 430 | 4.48e-89 | 274 |
| Msa0968180 | MtrunA17_Chr3g0144461 | 43.529 | 170 | 73 | 6 | 25 | 181 | 271 | 430 | 1.83e-26 | 109 |
| Msa0968180 | MtrunA17_Chr3g0138221 | 49.714 | 350 | 154 | 4 | 17 | 360 | 17 | 350 | 5.89e-100 | 304 |
| Msa0968180 | MtrunA17_Chr3g0138221 | 49.643 | 280 | 139 | 2 | 85 | 362 | 199 | 478 | 4.18e-80 | 253 |
| Msa0968180 | MtrunA17_Chr3g0138221 | 49.296 | 284 | 138 | 2 | 85 | 362 | 147 | 430 | 3.11e-79 | 250 |
| Msa0968180 | MtrunA17_Chr4g0034831 | 35.233 | 386 | 189 | 17 | 18 | 361 | 19 | 385 | 8.80e-47 | 163 |
| Msa0968180 | MtrunA17_Chr4g0034831 | 33.520 | 358 | 183 | 12 | 19 | 362 | 20 | 336 | 3.54e-43 | 154 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 70 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTGGTTCAAAATCTTTAT+TGG | 0.220637 | 6_3:-98399830 | None:intergenic |
| TCTTGGTTCAAAATCTTTAT+TGG | 0.225126 | 6_3:-98399908 | None:intergenic |
| TCTTGGTTCAAAATCTTTAT+TGG | 0.225126 | 6_3:-98399986 | None:intergenic |
| AGACCTAACATTTCAGCTTA+TGG | 0.239620 | 6_3:+98400162 | Msa0968180:CDS |
| AGACCCAATGTTTCAGCTTA+TGG | 0.248284 | 6_3:+98399616 | Msa0968180:CDS |
| AGACCCAATGTTTCAGCTTA+TGG | 0.248284 | 6_3:+98399772 | Msa0968180:CDS |
| AGACCCAATGTTTCAGCTTA+TGG | 0.248284 | 6_3:+98399928 | Msa0968180:CDS |
| AGACCTAATGTTTCAGCTTA+TGG | 0.249885 | 6_3:+98399538 | Msa0968180:CDS |
| TGTAGAATCAAGAAAAGATT+TGG | 0.250935 | 6_3:+98399222 | Msa0968180:CDS |
| GACCTAACATTTCAGCTTAT+GGG | 0.310475 | 6_3:+98400163 | Msa0968180:CDS |
| AGGTCTTGGTTCAAAATCTT+TGG | 0.310679 | 6_3:-98400145 | None:intergenic |
| CATTTATGCATCATATTTAG+TGG | 0.320826 | 6_3:-98400238 | None:intergenic |
| GTTCCATAAGCTGAAACATT+AGG | 0.327800 | 6_3:-98399541 | None:intergenic |
| AAACAATTACATTGATGTTA+TGG | 0.330758 | 6_3:+98400107 | Msa0968180:CDS |
| ATATTTAGTGGCACTTGGTC+GGG | 0.347002 | 6_3:-98400226 | None:intergenic |
| AGACAATCGTGTTGAAGTTA+AGG | 0.379767 | 6_3:+98399717 | Msa0968180:CDS |
| AGACAATGGTATTGATGTTA+AGG | 0.392683 | 6_3:+98399795 | Msa0968180:CDS |
| AGACAATGGTATTGATGTTA+AGG | 0.392683 | 6_3:+98399951 | Msa0968180:CDS |
| ATTGATGTTAAGGAAAATAA+AGG | 0.395870 | 6_3:+98399805 | Msa0968180:CDS |
| ATTGATGTTAAGGAAAATAA+AGG | 0.395870 | 6_3:+98399961 | Msa0968180:CDS |
| AGACCCAATGTTTCAGCATA+TGG | 0.405735 | 6_3:+98400006 | Msa0968180:CDS |
| ATGAATGATGTCATTGTCTA+TGG | 0.405969 | 6_3:-98399404 | None:intergenic |
| ATTGATGTTACAGAAAATAA+AGG | 0.415243 | 6_3:+98399883 | Msa0968180:CDS |
| ACACCCAATGTTTCAGCATA+TGG | 0.418154 | 6_3:+98399694 | Msa0968180:CDS |
| TCTCCATATGCTGAAATGTT+TGG | 0.423109 | 6_3:-98399853 | None:intergenic |
| GTAGAATCAAGAAAAGATTT+GGG | 0.427549 | 6_3:+98399223 | Msa0968180:CDS |
| TATGCTGAAACATTGGGTCT+TGG | 0.433141 | 6_3:-98400081 | None:intergenic |
| TAAGCTGAAACATTGGGTCT+TGG | 0.435355 | 6_3:-98399769 | None:intergenic |
| TATGCTGAAATGTTTGGTCT+TGG | 0.439257 | 6_3:-98399847 | None:intergenic |
| GACAATCGTGTTGAAGTTAA+GGG | 0.442091 | 6_3:+98399718 | Msa0968180:CDS |
| AGACCAAACATTTCAGCATA+TGG | 0.445583 | 6_3:+98399850 | Msa0968180:CDS |
| CATATTTAGTGGCACTTGGT+CGG | 0.446372 | 6_3:-98400227 | None:intergenic |
| GTCTCCATATGCTGAAACAT+TGG | 0.449066 | 6_3:-98400010 | None:intergenic |
| TAAGCTGAAATGTTAGGTCT+TGG | 0.458122 | 6_3:-98400159 | None:intergenic |
| TAAGCTGAAACATTAGGTCT+TGG | 0.463292 | 6_3:-98399535 | None:intergenic |
| TAAGCTGAAACATTGGGTCT+TGG | 0.464372 | 6_3:-98399613 | None:intergenic |
| TAAGCTGAAACATTGGGTCT+TGG | 0.464372 | 6_3:-98399925 | None:intergenic |
| TATGAAGATAATAACATTGA+GGG | 0.464536 | 6_3:+98399484 | Msa0968180:CDS |
| AAACCTTTGAAAGACTGCTT+CGG | 0.465281 | 6_3:-98399337 | None:intergenic |
| TATGCTGAAACATTGGGTCT+TGG | 0.475638 | 6_3:-98400003 | None:intergenic |
| TCTCCATATGCTGAAACATT+GGG | 0.476305 | 6_3:-98400009 | None:intergenic |
| AACAAATGAAATTGATGCTA+AGG | 0.478202 | 6_3:+98399561 | Msa0968180:CDS |
| GTCTCCATAAGCTGAAACAT+TGG | 0.487144 | 6_3:-98399620 | None:intergenic |
| GTCTCCATAAGCTGAAACAT+TGG | 0.487144 | 6_3:-98399776 | None:intergenic |
| GTCTCCATAAGCTGAAACAT+TGG | 0.487144 | 6_3:-98399932 | None:intergenic |
| TCCCCATAAGCTGAAATGTT+AGG | 0.487972 | 6_3:-98400165 | None:intergenic |
| ATTCATGCTAAGAGCAAGAA+AGG | 0.490123 | 6_3:+98399421 | Msa0968180:CDS |
| TATTTAGTGGCACTTGGTCG+GGG | 0.498218 | 6_3:-98400225 | None:intergenic |
| TCTCCATAAGCTGAAACATT+GGG | 0.499953 | 6_3:-98399619 | None:intergenic |
| TCTCCATAAGCTGAAACATT+GGG | 0.499953 | 6_3:-98399775 | None:intergenic |
| TCTCCATAAGCTGAAACATT+GGG | 0.499953 | 6_3:-98399931 | None:intergenic |
| GTCTCCATATGCTGAAACAT+TGG | 0.510420 | 6_3:-98399698 | None:intergenic |
| GCATCATATTTAGTGGCACT+TGG | 0.527772 | 6_3:-98400231 | None:intergenic |
| AATTGATGCTAAGGAAAAGA+AGG | 0.533314 | 6_3:+98399570 | Msa0968180:CDS |
| AGGGGCAACAAAGCAAGAGC+AGG | 0.535358 | 6_3:-98396889 | None:intergenic |
| ACTCCGAAGCAGTCTTTCAA+AGG | 0.542773 | 6_3:+98399334 | Msa0968180:CDS |
| TCTCCATATGCTGAAACATT+GGG | 0.551421 | 6_3:-98399697 | None:intergenic |
| ACCTAACATTTCAGCTTATG+GGG | 0.562671 | 6_3:+98400164 | Msa0968180:CDS |
| GACATGCGAAAAGAAATTCA+AGG | 0.567894 | 6_3:+98399277 | Msa0968180:CDS |
| GTTTCAGCTTATGGAGACAA+TGG | 0.577650 | 6_3:+98399781 | Msa0968180:CDS |
| GTTTCAGCTTATGGAGACAA+TGG | 0.577650 | 6_3:+98399937 | Msa0968180:CDS |
| ATATGAAGATAATAACATTG+AGG | 0.587671 | 6_3:+98399483 | Msa0968180:CDS |
| TATGCTGAAACATTGGGTGT+TGG | 0.621863 | 6_3:-98399691 | None:intergenic |
| ACATGCGAAAAGAAATTCAA+GGG | 0.625015 | 6_3:+98399278 | Msa0968180:CDS |
| TATTGATGTTGAATTCACAA+AGG | 0.628277 | 6_3:+98400194 | Msa0968180:CDS |
| ACTTGTGTGTCTATTACAAG+TGG | 0.633990 | 6_3:-98399379 | None:intergenic |
| ACATACCAAGAAAAGCAAGA+GGG | 0.652569 | 6_3:-98396908 | None:intergenic |
| CATACCAAGAAAAGCAAGAG+GGG | 0.655694 | 6_3:-98396907 | None:intergenic |
| AACATACCAAGAAAAGCAAG+AGG | 0.668669 | 6_3:-98396909 | None:intergenic |
| AAGTCAGACACATACAGCAG+AGG | 0.686329 | 6_3:+98396845 | Msa0968180:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATAAAATAATTATATTTA+AGG | - | chr6_3:98398220-98398239 | None:intergenic | 0.0% |
| !! | AATTAAATGTAAAATATAAG+AGG | - | chr6_3:98396985-98397004 | None:intergenic | 10.0% |
| !!! | AAGATTTAAAAATGATTTTA+TGG | - | chr6_3:98397084-98397103 | None:intergenic | 10.0% |
| !! | AATATATACCTATATATAAA+GGG | - | chr6_3:98397834-98397853 | None:intergenic | 10.0% |
| !! | AATGTAAAATCTTATTATAA+TGG | - | chr6_3:98397888-98397907 | None:intergenic | 10.0% |
| !!! | TCAAAAAAAAAATCATTTTT+TGG | - | chr6_3:98398062-98398081 | None:intergenic | 10.0% |
| !!! | AAAAATGATTTTTTTTTTGA+TGG | + | chr6_3:98398062-98398081 | Msa0968180:intron | 10.0% |
| !!! | TTTTATTTTTATTTTGCTAT+TGG | - | chr6_3:98398345-98398364 | None:intergenic | 10.0% |
| !!! | TGACTTATTTTATATTTTGA+TGG | - | chr6_3:98396831-98396850 | None:intergenic | 15.0% |
| !! | AATAAAATCTTCATCTAATT+GGG | - | chr6_3:98397423-98397442 | None:intergenic | 15.0% |
| !! | AAATAAAATCTTCATCTAAT+TGG | - | chr6_3:98397424-98397443 | None:intergenic | 15.0% |
| !!! | AAACTTTTAATTAAGAAAGT+TGG | - | chr6_3:98397718-98397737 | None:intergenic | 15.0% |
| !! | ATATATACCTATATATAAAG+GGG | - | chr6_3:98397833-98397852 | None:intergenic | 15.0% |
| !! | CAATATATACCTATATATAA+AGG | - | chr6_3:98397835-98397854 | None:intergenic | 15.0% |
| !!! | ATTTTTTGGTAAATCAAAAA+CGG | - | chr6_3:98398048-98398067 | None:intergenic | 15.0% |
| !!! | CTAATTGAGATATTTTTTTA+AGG | - | chr6_3:98398609-98398628 | None:intergenic | 15.0% |
| !! | CTTAAAAAAATATCTCAATT+AGG | + | chr6_3:98398607-98398626 | Msa0968180:intron | 15.0% |
| !!! | ATTTTATATTTTGATGGAAG+TGG | - | chr6_3:98396825-98396844 | None:intergenic | 20.0% |
| !!! | TTGAACAATTATTTTCTTGT+TGG | + | chr6_3:98397003-98397022 | Msa0968180:intron | 20.0% |
| !! | TATAATCACTAACATCAAAA+TGG | + | chr6_3:98397125-98397144 | Msa0968180:intron | 20.0% |
| !! | ATAATCACTAACATCAAAAT+GGG | + | chr6_3:98397126-98397145 | Msa0968180:intron | 20.0% |
| !! | TTATATTGTTCATATTGAAG+TGG | + | chr6_3:98397442-98397461 | Msa0968180:intron | 20.0% |
| !! | TATCTTCTAATTATACCATT+CGG | - | chr6_3:98397562-98397581 | None:intergenic | 20.0% |
| !!! | GTTGAATCTTTATTTAATTG+TGG | - | chr6_3:98397642-98397661 | None:intergenic | 20.0% |
| !! | TAATAAGAATAGTTAACGAA+GGG | + | chr6_3:98397768-98397787 | Msa0968180:intron | 20.0% |
| !! | TACTTCAAGAATATTAGATA+TGG | - | chr6_3:98398659-98398678 | None:intergenic | 20.0% |
| !! | ATAAATTGGATCCTAAAATT+TGG | - | chr6_3:98398790-98398809 | None:intergenic | 20.0% |
| !!! | ATTTTAGGATCCAATTTATT+AGG | + | chr6_3:98398791-98398810 | Msa0968180:intron | 20.0% |
| !!! | TAACTTGTATCCTAATAAAT+TGG | - | chr6_3:98398804-98398823 | None:intergenic | 20.0% |
| !! | TATTAGGATACAAGTTAATA+TGG | + | chr6_3:98398807-98398826 | Msa0968180:intron | 20.0% |
| !! | AAATTATTTCCTAACCAAAA+AGG | - | chr6_3:98399083-98399102 | None:intergenic | 20.0% |
| !! | TAAGACATAAGAAAAAGTAA+TGG | - | chr6_3:98399167-98399186 | None:intergenic | 20.0% |
| !!! | TCTTCATATTTTGAAACATT+GGG | - | chr6_3:98399472-98399491 | None:intergenic | 20.0% |
| !!! | ATCTTCATATTTTGAAACAT+TGG | - | chr6_3:98399473-98399492 | None:intergenic | 20.0% |
| !! | ATATGAAGATAATAACATTG+AGG | + | chr6_3:98399483-98399502 | Msa0968180:CDS | 20.0% |
| !! | TATGAAGATAATAACATTGA+GGG | + | chr6_3:98399484-98399503 | Msa0968180:CDS | 20.0% |
| !! | ATTGATGTTAAGGAAAATAA+AGG | + | chr6_3:98399805-98399824 | Msa0968180:CDS | 20.0% |
| !! | ATTGATGTTACAGAAAATAA+AGG | + | chr6_3:98399883-98399902 | Msa0968180:CDS | 20.0% |
| !! | ATTGATGTTAAGGAAAATAA+AGG | + | chr6_3:98399805-98399824 | Msa0968180:CDS | 20.0% |
| !! | AAACAATTACATTGATGTTA+TGG | + | chr6_3:98400107-98400126 | Msa0968180:CDS | 20.0% |
| ! | ATCGATTAACTTTCAGTATT+CGG | - | chr6_3:98397049-98397068 | None:intergenic | 25.0% |
| ! | ATTAGAATAGTTTAACCGAA+TGG | + | chr6_3:98397544-98397563 | Msa0968180:intron | 25.0% |
| ! | GTAATAAGAATAGTTAACGA+AGG | + | chr6_3:98397767-98397786 | Msa0968180:intron | 25.0% |
| !! | TAAAGGGGATATATGATTTT+AGG | - | chr6_3:98397818-98397837 | None:intergenic | 25.0% |
| ! | CATATATCCCCTTTATATAT+AGG | + | chr6_3:98397823-98397842 | Msa0968180:intron | 25.0% |
| !!! | ATTTTTTTTTTGATGGTGTC+TGG | + | chr6_3:98398069-98398088 | Msa0968180:intron | 25.0% |
| !!! | TTTTTTTTTTGATGGTGTCT+GGG | + | chr6_3:98398070-98398089 | Msa0968180:intron | 25.0% |
| !!! | TTTTTATTTTGCTATTGGTC+AGG | - | chr6_3:98398340-98398359 | None:intergenic | 25.0% |
| ! | TTAGGTAGATTAATCTTAAG+TGG | - | chr6_3:98398510-98398529 | None:intergenic | 25.0% |
| !! | TCAACGATTTTCCAAATTTT+AGG | + | chr6_3:98398776-98398795 | Msa0968180:intron | 25.0% |
| ! | GGAAAAAACACTCATAATTA+GGG | - | chr6_3:98399062-98399081 | None:intergenic | 25.0% |
| ! | AGGAAAAAACACTCATAATT+AGG | - | chr6_3:98399063-98399082 | None:intergenic | 25.0% |
| !!! | TATGAGTGTTTTTTCCTTTT+TGG | + | chr6_3:98399066-98399085 | Msa0968180:intron | 25.0% |
| ! | TGTAGAATCAAGAAAAGATT+TGG | + | chr6_3:98399222-98399241 | Msa0968180:CDS | 25.0% |
| ! | GTAGAATCAAGAAAAGATTT+GGG | + | chr6_3:98399223-98399242 | Msa0968180:CDS | 25.0% |
| ! | AACAAATGAAATTGATGCTA+AGG | + | chr6_3:98399561-98399580 | Msa0968180:CDS | 25.0% |
| ! | TATTGATGCTAAGAAAAAGA+AGG | + | chr6_3:98399648-98399667 | Msa0968180:CDS | 25.0% |
| ! | TCTTGGTTCAAAATCTTTAT+TGG | - | chr6_3:98399833-98399852 | None:intergenic | 25.0% |
| ! | TCTTGGTTCAAAATCTTTAT+TGG | - | chr6_3:98399833-98399852 | None:intergenic | 25.0% |
| ! | TCTTGGTTCAAAATCTTTAT+TGG | - | chr6_3:98399833-98399852 | None:intergenic | 25.0% |
| !! | TTTTCATATGCTGAAACATT+GGG | - | chr6_3:98400090-98400109 | None:intergenic | 25.0% |
| ! | TATTGATGTTGAATTCACAA+AGG | + | chr6_3:98400194-98400213 | Msa0968180:CDS | 25.0% |
| ATTGTCGAGAAAATCTTGTA+TGG | + | chr6_3:98397153-98397172 | Msa0968180:intron | 30.0% | |
| TGTGATCAAACCAAAATGTT+TGG | - | chr6_3:98397186-98397205 | None:intergenic | 30.0% | |
| GACAATGCATAATATATGCA+AGG | - | chr6_3:98398159-98398178 | None:intergenic | 30.0% | |
| ! | AAAAAGTATACGACTCACAT+TGG | + | chr6_3:98398257-98398276 | Msa0968180:intron | 30.0% |
| AAAACATTCAAGTGAGTGTT+GGG | + | chr6_3:98398312-98398331 | Msa0968180:intron | 30.0% | |
| !! | TTTTAAGGATTCGTTATCTC+AGG | - | chr6_3:98398594-98398613 | None:intergenic | 30.0% |
| TTTCACCAGTTTGAGAAAAT+AGG | + | chr6_3:98398726-98398745 | Msa0968180:intron | 30.0% | |
| ! | AATGTCCTATTTTCTCAAAC+TGG | - | chr6_3:98398734-98398753 | None:intergenic | 30.0% |
| GAGAAAATAGGACATTCTTA+AGG | + | chr6_3:98398738-98398757 | Msa0968180:intron | 30.0% | |
| TAGGATACAAGTTAATATGG+TGG | + | chr6_3:98398810-98398829 | Msa0968180:intron | 30.0% | |
| !! | TGAACTTCATAAGAAGTGTT+GGG | - | chr6_3:98398874-98398893 | None:intergenic | 30.0% |
| ! | TTGAACTTCATAAGAAGTGT+TGG | - | chr6_3:98398875-98398894 | None:intergenic | 30.0% |
| TAACCAATAACATGTTTACC+CGG | + | chr6_3:98398983-98399002 | Msa0968180:intron | 30.0% | |
| !!! | GTGTTTTTTCCTTTTTGGTT+AGG | + | chr6_3:98399071-98399090 | Msa0968180:intron | 30.0% |
| GTCTATATGTACAGTAAAGT+TGG | - | chr6_3:98399145-98399164 | None:intergenic | 30.0% | |
| ACATGCGAAAAGAAATTCAA+GGG | + | chr6_3:98399278-98399297 | Msa0968180:CDS | 30.0% | |
| ATGAATGATGTCATTGTCTA+TGG | - | chr6_3:98399407-98399426 | None:intergenic | 30.0% | |
| !!! | TATTTTGAAACATTGGGTCT+TGG | - | chr6_3:98399466-98399485 | None:intergenic | 30.0% |
| AATTGATGCTAAGGAAAAGA+AGG | + | chr6_3:98399570-98399589 | Msa0968180:CDS | 30.0% | |
| !! | AGACAATGGTATTGATGTTA+AGG | + | chr6_3:98399795-98399814 | Msa0968180:CDS | 30.0% |
| !! | AGACAATGGTATTGATGTTA+AGG | + | chr6_3:98399795-98399814 | Msa0968180:CDS | 30.0% |
| ! | GTTTTCATATGCTGAAACAT+TGG | - | chr6_3:98400091-98400110 | None:intergenic | 30.0% |
| ACATACCAAGAAAAGCAAGA+GGG | - | chr6_3:98396911-98396930 | None:intergenic | 35.0% | |
| AACATACCAAGAAAAGCAAG+AGG | - | chr6_3:98396912-98396931 | None:intergenic | 35.0% | |
| GAAAGAGAAGAGAGAGAAAA+TGG | - | chr6_3:98397250-98397269 | None:intergenic | 35.0% | |
| TGTGACCAAACCAAAATTCT+TGG | + | chr6_3:98397294-98397313 | Msa0968180:intron | 35.0% | |
| AATAACGAGAAACACTTGTG+TGG | - | chr6_3:98397327-98397346 | None:intergenic | 35.0% | |
| TTGTGCAATACGAAAGCAAA+AGG | - | chr6_3:98397355-98397374 | None:intergenic | 35.0% | |
| ! | TGTGAAGAGTTGCATGATTT+TGG | - | chr6_3:98397595-98397614 | None:intergenic | 35.0% |
| CTTCACACAGATGTATAGAT+AGG | + | chr6_3:98397608-98397627 | Msa0968180:intron | 35.0% | |
| !!! | CCTTTTTTTTGAGGGATCAA+GGG | - | chr6_3:98397988-98398007 | None:intergenic | 35.0% |
| !!! | ACCTTTTTTTTGAGGGATCA+AGG | - | chr6_3:98397989-98398008 | None:intergenic | 35.0% |
| !!! | TCAAGGGACCTTTTTTTTGA+GGG | - | chr6_3:98397996-98398015 | None:intergenic | 35.0% |
| ATGGACCTAATAATGGTCAA+GGG | - | chr6_3:98398012-98398031 | None:intergenic | 35.0% | |
| AATGGACCTAATAATGGTCA+AGG | - | chr6_3:98398013-98398032 | None:intergenic | 35.0% | |
| CAAAACATTCAAGTGAGTGT+TGG | + | chr6_3:98398311-98398330 | Msa0968180:intron | 35.0% | |
| ! | AAACATTCAAGTGAGTGTTG+GGG | + | chr6_3:98398313-98398332 | Msa0968180:intron | 35.0% |
| !!! | GGAGGAGATATTATTTTGAG+TGG | - | chr6_3:98398489-98398508 | None:intergenic | 35.0% |
| GGTAGATTAATCTTAAGTGG+AGG | - | chr6_3:98398507-98398526 | None:intergenic | 35.0% | |
| !! | TCGTTATCTCAGGTTGTTTT+AGG | - | chr6_3:98398584-98398603 | None:intergenic | 35.0% |
| !! | GAACTTCATAAGAAGTGTTG+GGG | - | chr6_3:98398873-98398892 | None:intergenic | 35.0% |
| GACATGCGAAAAGAAATTCA+AGG | + | chr6_3:98399277-98399296 | Msa0968180:CDS | 35.0% | |
| !! | CTTGAGATTCTTTTTCGTCT+CGG | - | chr6_3:98399314-98399333 | None:intergenic | 35.0% |
| ! | AAACCTTTGAAAGACTGCTT+CGG | - | chr6_3:98399340-98399359 | None:intergenic | 35.0% |
| ACTTGTGTGTCTATTACAAG+TGG | - | chr6_3:98399382-98399401 | None:intergenic | 35.0% | |
| ATTCATGCTAAGAGCAAGAA+AGG | + | chr6_3:98399421-98399440 | Msa0968180:CDS | 35.0% | |
| TAAGCTGAAACATTAGGTCT+TGG | - | chr6_3:98399538-98399557 | None:intergenic | 35.0% | |
| AGACCTAATGTTTCAGCTTA+TGG | + | chr6_3:98399538-98399557 | Msa0968180:CDS | 35.0% | |
| GTTCCATAAGCTGAAACATT+AGG | - | chr6_3:98399544-98399563 | None:intergenic | 35.0% | |
| TCTCCATAAGCTGAAACATT+GGG | - | chr6_3:98399622-98399641 | None:intergenic | 35.0% | |
| TCTCCATATGCTGAAACATT+GGG | - | chr6_3:98399700-98399719 | None:intergenic | 35.0% | |
| AGACAATCGTGTTGAAGTTA+AGG | + | chr6_3:98399717-98399736 | Msa0968180:CDS | 35.0% | |
| GACAATCGTGTTGAAGTTAA+GGG | + | chr6_3:98399718-98399737 | Msa0968180:CDS | 35.0% | |
| TCTCCATAAGCTGAAACATT+GGG | - | chr6_3:98399622-98399641 | None:intergenic | 35.0% | |
| TATGCTGAAATGTTTGGTCT+TGG | - | chr6_3:98399850-98399869 | None:intergenic | 35.0% | |
| AGACCAAACATTTCAGCATA+TGG | + | chr6_3:98399850-98399869 | Msa0968180:CDS | 35.0% | |
| TCTCCATATGCTGAAATGTT+TGG | - | chr6_3:98399856-98399875 | None:intergenic | 35.0% | |
| TCTCCATAAGCTGAAACATT+GGG | - | chr6_3:98399622-98399641 | None:intergenic | 35.0% | |
| TCTCCATATGCTGAAACATT+GGG | - | chr6_3:98399700-98399719 | None:intergenic | 35.0% | |
| AGGTCTTGGTTCAAAATCTT+TGG | - | chr6_3:98400148-98400167 | None:intergenic | 35.0% | |
| TAAGCTGAAATGTTAGGTCT+TGG | - | chr6_3:98400162-98400181 | None:intergenic | 35.0% | |
| AGACCTAACATTTCAGCTTA+TGG | + | chr6_3:98400162-98400181 | Msa0968180:CDS | 35.0% | |
| GACCTAACATTTCAGCTTAT+GGG | + | chr6_3:98400163-98400182 | Msa0968180:CDS | 35.0% | |
| ACCTAACATTTCAGCTTATG+GGG | + | chr6_3:98400164-98400183 | Msa0968180:CDS | 35.0% | |
| CATACCAAGAAAAGCAAGAG+GGG | - | chr6_3:98396910-98396929 | None:intergenic | 40.0% | |
| GAGAAAATCTTGTATGGACC+AGG | + | chr6_3:98397159-98397178 | Msa0968180:intron | 40.0% | |
| CAAACCAAAATGTTTGGTCC+TGG | - | chr6_3:98397180-98397199 | None:intergenic | 40.0% | |
| !!! | CAGGACCAAGAATTTTGGTT+TGG | - | chr6_3:98397302-98397321 | None:intergenic | 40.0% |
| CAAACCAAAATTCTTGGTCC+TGG | + | chr6_3:98397300-98397319 | Msa0968180:intron | 40.0% | |
| CCCTTGATCCCTCAAAAAAA+AGG | + | chr6_3:98397985-98398004 | Msa0968180:intron | 40.0% | |
| !!! | GTCAAGGGACCTTTTTTTTG+AGG | - | chr6_3:98397997-98398016 | None:intergenic | 40.0% |
| AAGGTCCCTTGACCATTATT+AGG | + | chr6_3:98398004-98398023 | Msa0968180:intron | 40.0% | |
| CCATTATTAGGTCCATTGCA+CGG | + | chr6_3:98398016-98398035 | Msa0968180:intron | 40.0% | |
| CATAATATATGCAAGGTCCG+CGG | - | chr6_3:98398152-98398171 | None:intergenic | 40.0% | |
| TGACTCTCAGAGAGAACTTT+AGG | - | chr6_3:98398528-98398547 | None:intergenic | 40.0% | |
| GTTGGGGTTGAGATAAAATG+TGG | - | chr6_3:98398857-98398876 | None:intergenic | 40.0% | |
| TGAAGGTTTCCCTTGTATTC+TGG | - | chr6_3:98399009-98399028 | None:intergenic | 40.0% | |
| AGCGAACAATCATCTAGTGA+AGG | - | chr6_3:98399026-98399045 | None:intergenic | 40.0% | |
| TAAGCTGAAACATTGGGTCT+TGG | - | chr6_3:98399616-98399635 | None:intergenic | 40.0% | |
| AGACCCAATGTTTCAGCTTA+TGG | + | chr6_3:98399616-98399635 | Msa0968180:CDS | 40.0% | |
| GTCTCCATAAGCTGAAACAT+TGG | - | chr6_3:98399623-98399642 | None:intergenic | 40.0% | |
| TATGCTGAAACATTGGGTGT+TGG | - | chr6_3:98399694-98399713 | None:intergenic | 40.0% | |
| ACACCCAATGTTTCAGCATA+TGG | + | chr6_3:98399694-98399713 | Msa0968180:CDS | 40.0% | |
| GTCTCCATATGCTGAAACAT+TGG | - | chr6_3:98399701-98399720 | None:intergenic | 40.0% | |
| TAAGCTGAAACATTGGGTCT+TGG | - | chr6_3:98399616-98399635 | None:intergenic | 40.0% | |
| AGACCCAATGTTTCAGCTTA+TGG | + | chr6_3:98399616-98399635 | Msa0968180:CDS | 40.0% | |
| GTCTCCATAAGCTGAAACAT+TGG | - | chr6_3:98399623-98399642 | None:intergenic | 40.0% | |
| GTTTCAGCTTATGGAGACAA+TGG | + | chr6_3:98399625-98399644 | Msa0968180:CDS | 40.0% | |
| TAAGCTGAAACATTGGGTCT+TGG | - | chr6_3:98399616-98399635 | None:intergenic | 40.0% | |
| AGACCCAATGTTTCAGCTTA+TGG | + | chr6_3:98399616-98399635 | Msa0968180:CDS | 40.0% | |
| GTCTCCATAAGCTGAAACAT+TGG | - | chr6_3:98399623-98399642 | None:intergenic | 40.0% | |
| GTTTCAGCTTATGGAGACAA+TGG | + | chr6_3:98399625-98399644 | Msa0968180:CDS | 40.0% | |
| TATGCTGAAACATTGGGTCT+TGG | - | chr6_3:98400006-98400025 | None:intergenic | 40.0% | |
| AGACCCAATGTTTCAGCATA+TGG | + | chr6_3:98400006-98400025 | Msa0968180:CDS | 40.0% | |
| GTCTCCATATGCTGAAACAT+TGG | - | chr6_3:98399701-98399720 | None:intergenic | 40.0% | |
| TATGCTGAAACATTGGGTCT+TGG | - | chr6_3:98400006-98400025 | None:intergenic | 40.0% | |
| TCCCCATAAGCTGAAATGTT+AGG | - | chr6_3:98400168-98400187 | None:intergenic | 40.0% | |
| ATATTTAGTGGCACTTGGTC+GGG | - | chr6_3:98400229-98400248 | None:intergenic | 40.0% | |
| CATATTTAGTGGCACTTGGT+CGG | - | chr6_3:98400230-98400249 | None:intergenic | 40.0% | |
| GCATCATATTTAGTGGCACT+TGG | - | chr6_3:98400234-98400253 | None:intergenic | 40.0% | |
| AAGTCAGACACATACAGCAG+AGG | + | chr6_3:98396845-98396864 | Msa0968180:five_prime_UTR | 45.0% | |
| ! | TGGACCAGGACCAAACATTT+TGG | + | chr6_3:98397173-98397192 | Msa0968180:intron | 45.0% |
| GAGAGAAGAGAAGAGAGAGA+AGG | - | chr6_3:98397223-98397242 | None:intergenic | 45.0% | |
| ! | TGGACCAGGACCAAGAATTT+TGG | - | chr6_3:98397307-98397326 | None:intergenic | 45.0% |
| CCGTGCAATGGACCTAATAA+TGG | - | chr6_3:98398019-98398038 | None:intergenic | 45.0% | |
| TTATTAGGTCCATTGCACGG+AGG | + | chr6_3:98398019-98398038 | Msa0968180:intron | 45.0% | |
| TGGCCGGGTAAACATGTTAT+TGG | - | chr6_3:98398989-98399008 | None:intergenic | 45.0% | |
| TTTACCCGGCCAGAATACAA+GGG | + | chr6_3:98398997-98399016 | Msa0968180:intron | 45.0% | |
| ACTCCGAAGCAGTCTTTCAA+AGG | + | chr6_3:98399334-98399353 | Msa0968180:CDS | 45.0% | |
| TATTTAGTGGCACTTGGTCG+GGG | - | chr6_3:98400228-98400247 | None:intergenic | 45.0% | |
| !! | AACAAAAATAATAAATATTT+AGG | + | chr6_3:98397961-98397980 | Msa0968180:intron | 5.0% |
| !!! | TGTTATTTTTTATTTTTTTA+AGG | - | chr6_3:98398910-98398929 | None:intergenic | 5.0% |
| !! | GTTGCCCCTCTTGCTTTTCT+TGG | + | chr6_3:98396903-98396922 | Msa0968180:CDS | 50.0% |
| GAGAAACACTTGTGTGGACC+AGG | - | chr6_3:98397321-98397340 | None:intergenic | 50.0% | |
| AAACGGTATCCTCCGTGCAA+TGG | - | chr6_3:98398031-98398050 | None:intergenic | 50.0% | |
| !! | ATGGTGTCTGGGAAAGTGTC+TGG | + | chr6_3:98398081-98398100 | Msa0968180:intron | 50.0% |
| !! | TGGTGTCTGGGAAAGTGTCT+GGG | + | chr6_3:98398082-98398101 | Msa0968180:intron | 50.0% |
| !! | ATGGTGTCTGGGAAAGTGTC+TGG | + | chr6_3:98398081-98398100 | Msa0968180:intron | 50.0% |
| !! | TGGTGTCTGGGAAAGTGTCT+GGG | + | chr6_3:98398082-98398101 | Msa0968180:intron | 50.0% |
| !! | TTCCAACGAGCTTGCTAGCT+TGG | - | chr6_3:98398195-98398214 | None:intergenic | 50.0% |
| !! | GGTGGCTTGCTGCTTAGAAA+AGG | + | chr6_3:98398828-98398847 | Msa0968180:intron | 50.0% |
| CCTTCGAGACAATCTTCGTC+GGG | - | chr6_3:98398947-98398966 | None:intergenic | 50.0% | |
| CCCTTCGAGACAATCTTCGT+CGG | - | chr6_3:98398948-98398967 | None:intergenic | 50.0% | |
| CCGACGAAGATTGTCTCGAA+GGG | + | chr6_3:98398945-98398964 | Msa0968180:intron | 50.0% | |
| GTTTACCCGGCCAGAATACA+AGG | + | chr6_3:98398996-98399015 | Msa0968180:intron | 50.0% | |
| GTTTCCCTTGTATTCTGGCC+GGG | - | chr6_3:98399004-98399023 | None:intergenic | 50.0% | |
| GGTTTCCCTTGTATTCTGGC+CGG | - | chr6_3:98399005-98399024 | None:intergenic | 50.0% | |
| AGGGGCAACAAAGCAAGAGC+AGG | - | chr6_3:98396892-98396911 | None:intergenic | 55.0% | |
| !! | GGTGTCTGGGAAAGTGTCTG+GGG | + | chr6_3:98398083-98398102 | Msa0968180:intron | 55.0% |
| ! | AGTGTCTGGGGTTTGAACCG+CGG | + | chr6_3:98398095-98398114 | Msa0968180:intron | 55.0% |
| TTTGAACCGCGGATGGTGTC+TGG | + | chr6_3:98398106-98398125 | Msa0968180:intron | 55.0% | |
| TTGAACCGCGGATGGTGTCT+GGG | + | chr6_3:98398107-98398126 | Msa0968180:intron | 55.0% | |
| ACTTTCCCAGACACCATCCG+CGG | - | chr6_3:98398115-98398134 | None:intergenic | 55.0% | |
| !! | GGTGTCTGGGAAAGTGTCTG+GGG | + | chr6_3:98398083-98398102 | Msa0968180:intron | 55.0% |
| ! | AGTGTCTGGGGTTTGAACCG+CGG | + | chr6_3:98398095-98398114 | Msa0968180:intron | 55.0% |
| ! | GCTTGCTAGCTTGGCTAAGC+TGG | - | chr6_3:98398186-98398205 | None:intergenic | 55.0% |
| AGCCAAGCTAGCAAGCTCGT+TGG | + | chr6_3:98398190-98398209 | Msa0968180:intron | 55.0% | |
| CCCGACGAAGATTGTCTCGA+AGG | + | chr6_3:98398944-98398963 | Msa0968180:intron | 55.0% | |
| ! | TCTGGGGTTTGAACCGCGGA+TGG | + | chr6_3:98398099-98398118 | Msa0968180:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 98396820 | 98400257 | 98396820 | ID=Msa0968180;Name=Msa0968180 |
| chr6_3 | mRNA | 98396820 | 98400257 | 98396820 | ID=Msa0968180-mRNA-1;Parent=Msa0968180;Name=Msa0968180-mRNA-1;_AED=0.23;_eAED=0.23;_QI=63|1|0.5|1|0|0|2|0|362 |
| chr6_3 | exon | 98396820 | 98396924 | 98396820 | ID=Msa0968180-mRNA-1:exon:18501;Parent=Msa0968180-mRNA-1 |
| chr6_3 | exon | 98399211 | 98400257 | 98399211 | ID=Msa0968180-mRNA-1:exon:18502;Parent=Msa0968180-mRNA-1 |
| chr6_3 | five_prime_UTR | 98396820 | 98396882 | 98396820 | ID=Msa0968180-mRNA-1:five_prime_utr;Parent=Msa0968180-mRNA-1 |
| chr6_3 | CDS | 98396883 | 98396924 | 98396883 | ID=Msa0968180-mRNA-1:cds;Parent=Msa0968180-mRNA-1 |
| chr6_3 | CDS | 98399211 | 98400257 | 98399211 | ID=Msa0968180-mRNA-1:cds;Parent=Msa0968180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
