Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1381010 | XP_003603905.1 | 85.714 | 350 | 41 | 3 | 16 | 362 | 16 | 359 | 0.0 | 555 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1381010 | sp|P17772|OSS2_PEA | 46.429 | 196 | 70 | 3 | 15 | 208 | 17 | 179 | 5.47e-46 | 158 |
| Msa1381010 | sp|P17772|OSS2_PEA | 63.333 | 120 | 44 | 0 | 243 | 362 | 62 | 181 | 1.04e-43 | 152 |
| Msa1381010 | sp|P17772|OSS2_PEA | 46.471 | 170 | 84 | 2 | 143 | 312 | 17 | 179 | 3.38e-41 | 145 |
| Msa1381010 | sp|P17772|OSS2_PEA | 58.871 | 124 | 47 | 1 | 215 | 338 | 60 | 179 | 2.64e-39 | 140 |
| Msa1381010 | sp|P17772|OSS2_PEA | 53.226 | 124 | 54 | 1 | 137 | 260 | 60 | 179 | 9.94e-35 | 129 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1381010 | G7J6J7 | 85.714 | 350 | 41 | 3 | 16 | 362 | 16 | 359 | 0.0 | 555 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000370 | Msa1381010 | 0.877346 | 6.764849e-69 | -8.615850e-47 |
| Msa0013270 | Msa1381010 | 0.840727 | 7.304344e-58 | -8.615850e-47 |
| Msa0038530 | Msa1381010 | 0.807190 | 5.705591e-50 | -8.615850e-47 |
| Msa0045810 | Msa1381010 | 0.851099 | 1.106678e-60 | -8.615850e-47 |
| Msa0046200 | Msa1381010 | 0.834143 | 3.553015e-56 | -8.615850e-47 |
| Msa0062190 | Msa1381010 | 0.818402 | 1.997015e-52 | -8.615850e-47 |
| Msa0072180 | Msa1381010 | 0.814324 | 1.632475e-51 | -8.615850e-47 |
| Msa0073110 | Msa1381010 | 0.806861 | 6.698428e-50 | -8.615850e-47 |
| Msa0106540 | Msa1381010 | 0.853703 | 2.005767e-61 | -8.615850e-47 |
| Msa0120450 | Msa1381010 | 0.825637 | 4.206135e-54 | -8.615850e-47 |
| Msa1357840 | Msa1381010 | 0.800056 | 1.723631e-48 | -8.615850e-47 |
| Msa1362590 | Msa1381010 | 0.809073 | 2.266217e-50 | -8.615850e-47 |
| Msa1381010 | Msa1381030 | 0.832932 | 7.125929e-56 | -8.615850e-47 |
| Msa1381010 | Msa1385260 | 0.818797 | 1.625039e-52 | -8.615850e-47 |
| Msa1381010 | Msa1405830 | 0.853630 | 2.104760e-61 | -8.615850e-47 |
| Msa1381010 | Msa1407810 | 0.870770 | 1.135408e-66 | -8.615850e-47 |
| Msa1381010 | Msa1409600 | 0.804650 | 1.950883e-49 | -8.615850e-47 |
| Msa1381010 | Msa1417220 | 0.811634 | 6.346895e-51 | -8.615850e-47 |
| Msa1381010 | Msa1431030 | 0.801370 | 9.298647e-49 | -8.615850e-47 |
| Msa1381010 | Msa1433360 | 0.864025 | 1.635212e-64 | -8.615850e-47 |
| Msa1381010 | Msa1437780 | 0.869877 | 2.226830e-66 | -8.615850e-47 |
| Msa1381010 | Msa1440430 | 0.835320 | 1.796891e-56 | -8.615850e-47 |
| Msa1381010 | Msa1445530 | 0.854784 | 9.770367e-62 | -8.615850e-47 |
| Msa1381010 | Msa1455360 | 0.805146 | 1.536434e-49 | -8.615850e-47 |
| Msa0604190 | Msa1381010 | 0.805452 | 1.325654e-49 | -8.615850e-47 |
| Msa0605480 | Msa1381010 | 0.826394 | 2.779203e-54 | -8.615850e-47 |
| Msa0606600 | Msa1381010 | 0.812075 | 5.087716e-51 | -8.615850e-47 |
| Msa0618700 | Msa1381010 | 0.804795 | 1.819713e-49 | -8.615850e-47 |
| Msa0645370 | Msa1381010 | 0.805817 | 1.111344e-49 | -8.615850e-47 |
| Msa0645390 | Msa1381010 | 0.804120 | 2.515965e-49 | -8.615850e-47 |
| Msa0646010 | Msa1381010 | 0.842666 | 2.249715e-58 | -8.615850e-47 |
| Msa0646430 | Msa1381010 | 0.842468 | 2.539390e-58 | -8.615850e-47 |
| Msa0646440 | Msa1381010 | 0.832105 | 1.142803e-55 | -8.615850e-47 |
| Msa0647300 | Msa1381010 | 0.819750 | 9.859153e-53 | -8.615850e-47 |
| Msa0657710 | Msa1381010 | 0.840398 | 8.909826e-58 | -8.615850e-47 |
| Msa0686040 | Msa1381010 | 0.836648 | 8.272187e-57 | -8.615850e-47 |
| Msa0686830 | Msa1381010 | 0.825026 | 5.866712e-54 | -8.615850e-47 |
| Msa0694790 | Msa1381010 | 0.800908 | 1.155867e-48 | -8.615850e-47 |
| Msa0702800 | Msa1381010 | 0.846144 | 2.611286e-59 | -8.615850e-47 |
| Msa0708020 | Msa1381010 | 0.812236 | 4.693740e-51 | -8.615850e-47 |
| Msa0716980 | Msa1381010 | 0.807100 | 5.962045e-50 | -8.615850e-47 |
| Msa0735010 | Msa1381010 | 0.830473 | 2.879383e-55 | -8.615850e-47 |
| Msa0745140 | Msa1381010 | 0.806147 | 9.471095e-50 | -8.615850e-47 |
| Msa0758990 | Msa1381010 | 0.808768 | 2.633060e-50 | -8.615850e-47 |
| Msa0775350 | Msa1381010 | 0.806820 | 6.833460e-50 | -8.615850e-47 |
| Msa0776640 | Msa1381010 | 0.807418 | 5.103897e-50 | -8.615850e-47 |
| Msa0800120 | Msa1381010 | 0.803794 | 2.941309e-49 | -8.615850e-47 |
| Msa0812720 | Msa1381010 | 0.817549 | 3.112871e-52 | -8.615850e-47 |
| Msa0819310 | Msa1381010 | 0.822441 | 2.364766e-53 | -8.615850e-47 |
| Msa0825920 | Msa1381010 | 0.811752 | 5.983506e-51 | -8.615850e-47 |
| Msa0828960 | Msa1381010 | 0.844724 | 6.332615e-59 | -8.615850e-47 |
| Msa0838210 | Msa1381010 | 0.810565 | 1.082230e-50 | -8.615850e-47 |
| Msa0132700 | Msa1381010 | 0.821527 | 3.851357e-53 | -8.615850e-47 |
| Msa0139500 | Msa1381010 | 0.829107 | 6.191794e-55 | -8.615850e-47 |
| Msa0183710 | Msa1381010 | 0.804968 | 1.674121e-49 | -8.615850e-47 |
| Msa0188560 | Msa1381010 | 0.807761 | 4.315805e-50 | -8.615850e-47 |
| Msa0189720 | Msa1381010 | 0.822126 | 2.799340e-53 | -8.615850e-47 |
| Msa0203080 | Msa1381010 | 0.801442 | 8.987046e-49 | -8.615850e-47 |
| Msa0203880 | Msa1381010 | 0.809821 | 1.565680e-50 | -8.615850e-47 |
| Msa0206370 | Msa1381010 | 0.839238 | 1.785561e-57 | -8.615850e-47 |
| Msa0211460 | Msa1381010 | 0.817567 | 3.083827e-52 | -8.615850e-47 |
| Msa0230920 | Msa1381010 | 0.813033 | 3.140892e-51 | -8.615850e-47 |
| Msa0232100 | Msa1381010 | 0.817294 | 3.552569e-52 | -8.615850e-47 |
| Msa1233620 | Msa1381010 | 0.823140 | 1.626273e-53 | -8.615850e-47 |
| Msa1241960 | Msa1381010 | 0.808819 | 2.567962e-50 | -8.615850e-47 |
| Msa1242130 | Msa1381010 | 0.812591 | 3.925380e-51 | -8.615850e-47 |
| Msa1242160 | Msa1381010 | 0.842563 | 2.395890e-58 | -8.615850e-47 |
| Msa1250610 | Msa1381010 | 0.814910 | 1.211110e-51 | -8.615850e-47 |
| Msa1250660 | Msa1381010 | 0.848993 | 4.300353e-60 | -8.615850e-47 |
| Msa1253520 | Msa1381010 | 0.803956 | 2.721164e-49 | -8.615850e-47 |
| Msa1255710 | Msa1381010 | 0.832657 | 8.341206e-56 | -8.615850e-47 |
| Msa1257200 | Msa1381010 | 0.879716 | 9.930674e-70 | -8.615850e-47 |
| Msa1263110 | Msa1381010 | 0.819850 | 9.351116e-53 | -8.615850e-47 |
| Msa1268360 | Msa1381010 | 0.805227 | 1.478267e-49 | -8.615850e-47 |
| Msa1273320 | Msa1381010 | 0.826232 | 3.037288e-54 | -8.615850e-47 |
| Msa1275840 | Msa1381010 | 0.800869 | 1.177096e-48 | -8.615850e-47 |
| Msa1275930 | Msa1381010 | 0.812499 | 4.112124e-51 | -8.615850e-47 |
| Msa1281780 | Msa1381010 | 0.821356 | 4.217612e-53 | -8.615850e-47 |
| Msa1283930 | Msa1381010 | 0.849431 | 3.248181e-60 | -8.615850e-47 |
| Msa1283980 | Msa1381010 | 0.831197 | 1.913897e-55 | -8.615850e-47 |
| Msa1284020 | Msa1381010 | 0.852898 | 3.412935e-61 | -8.615850e-47 |
| Msa1288070 | Msa1381010 | 0.810784 | 9.701250e-51 | -8.615850e-47 |
| Msa1296860 | Msa1381010 | 0.805668 | 1.194360e-49 | -8.615850e-47 |
| Msa1311370 | Msa1381010 | 0.810620 | 1.052746e-50 | -8.615850e-47 |
| Msa1314020 | Msa1381010 | 0.815582 | 8.586382e-52 | -8.615850e-47 |
| Msa1321010 | Msa1381010 | 0.806110 | 9.644787e-50 | -8.615850e-47 |
| Msa1322500 | Msa1381010 | 0.803794 | 2.940825e-49 | -8.615850e-47 |
| Msa1322960 | Msa1381010 | 0.853954 | 1.698485e-61 | -8.615850e-47 |
| Msa1322980 | Msa1381010 | 0.837993 | 3.744660e-57 | -8.615850e-47 |
| Msa1323070 | Msa1381010 | 0.809543 | 1.796319e-50 | -8.615850e-47 |
| Msa1326640 | Msa1381010 | 0.814194 | 1.744519e-51 | -8.615850e-47 |
| Msa1326680 | Msa1381010 | 0.813657 | 2.290720e-51 | -8.615850e-47 |
| Msa1326710 | Msa1381010 | 0.810239 | 1.272569e-50 | -8.615850e-47 |
| Msa1334670 | Msa1381010 | 0.801484 | 8.812134e-49 | -8.615850e-47 |
| Msa0380110 | Msa1381010 | 0.812545 | 4.017969e-51 | -8.615850e-47 |
| Msa0386540 | Msa1381010 | 0.826103 | 3.259656e-54 | -8.615850e-47 |
| Msa0386560 | Msa1381010 | 0.966953 | 1.293734e-126 | -8.615850e-47 |
| Msa0387930 | Msa1381010 | 0.826175 | 3.133008e-54 | -8.615850e-47 |
| Msa0437480 | Msa1381010 | 0.823038 | 1.717519e-53 | -8.615850e-47 |
| Msa0467170 | Msa1381010 | 0.806033 | 1.001240e-49 | -8.615850e-47 |
| Msa0477900 | Msa1381010 | 0.800056 | 1.723746e-48 | -8.615850e-47 |
| Msa0481670 | Msa1381010 | 0.837922 | 3.904884e-57 | -8.615850e-47 |
| Msa1024480 | Msa1381010 | 0.808546 | 2.937013e-50 | -8.615850e-47 |
| Msa1029820 | Msa1381010 | 0.851785 | 7.077543e-61 | -8.615850e-47 |
| Msa1029840 | Msa1381010 | 0.808774 | 2.625571e-50 | -8.615850e-47 |
| Msa1029860 | Msa1381010 | 0.800143 | 1.655264e-48 | -8.615850e-47 |
| Msa1041060 | Msa1381010 | 0.826578 | 2.512414e-54 | -8.615850e-47 |
| Msa1042300 | Msa1381010 | 0.818405 | 1.994421e-52 | -8.615850e-47 |
| Msa1049400 | Msa1381010 | 0.819278 | 1.262880e-52 | -8.615850e-47 |
| Msa1052730 | Msa1381010 | 0.802721 | 4.904772e-49 | -8.615850e-47 |
| Msa1068730 | Msa1381010 | 0.817302 | 3.539346e-52 | -8.615850e-47 |
| Msa1068940 | Msa1381010 | 0.858717 | 6.800129e-63 | -8.615850e-47 |
| Msa1088320 | Msa1381010 | 0.829646 | 4.580879e-55 | -8.615850e-47 |
| Msa0240540 | Msa1381010 | 0.804959 | 1.681841e-49 | -8.615850e-47 |
| Msa0247050 | Msa1381010 | 0.823082 | 1.677603e-53 | -8.615850e-47 |
| Msa0248320 | Msa1381010 | 0.812510 | 4.088269e-51 | -8.615850e-47 |
| Msa0258010 | Msa1381010 | 0.830353 | 3.080588e-55 | -8.615850e-47 |
| Msa0278940 | Msa1381010 | 0.801649 | 8.151405e-49 | -8.615850e-47 |
| Msa0279810 | Msa1381010 | 0.800639 | 1.311711e-48 | -8.615850e-47 |
| Msa0298690 | Msa1381010 | 0.801114 | 1.048827e-48 | -8.615850e-47 |
| Msa0310130 | Msa1381010 | 0.805391 | 1.365705e-49 | -8.615850e-47 |
| Msa0318490 | Msa1381010 | 0.803109 | 4.078884e-49 | -8.615850e-47 |
| Msa0319220 | Msa1381010 | 0.802249 | 6.137277e-49 | -8.615850e-47 |
| Msa0328870 | Msa1381010 | 0.801593 | 8.367783e-49 | -8.615850e-47 |
| Msa0333770 | Msa1381010 | 0.819974 | 8.760658e-53 | -8.615850e-47 |
| Msa0335340 | Msa1381010 | 0.813727 | 2.211231e-51 | -8.615850e-47 |
| Msa0336460 | Msa1381010 | 0.817980 | 2.488082e-52 | -8.615850e-47 |
| Msa0354840 | Msa1381010 | 0.822753 | 2.001409e-53 | -8.615850e-47 |
| Msa0356270 | Msa1381010 | 0.811713 | 6.101983e-51 | -8.615850e-47 |
| Msa1107520 | Msa1381010 | 0.809007 | 2.340860e-50 | -8.615850e-47 |
| Msa1108560 | Msa1381010 | 0.803755 | 2.996256e-49 | -8.615850e-47 |
| Msa1111910 | Msa1381010 | 0.842180 | 3.026349e-58 | -8.615850e-47 |
| Msa1115900 | Msa1381010 | 0.807619 | 4.625699e-50 | -8.615850e-47 |
| Msa1127200 | Msa1381010 | 0.815209 | 1.039347e-51 | -8.615850e-47 |
| Msa1136050 | Msa1381010 | 0.818467 | 1.930834e-52 | -8.615850e-47 |
| Msa1147010 | Msa1381010 | 0.820007 | 8.612486e-53 | -8.615850e-47 |
| Msa1149910 | Msa1381010 | 0.812953 | 3.271036e-51 | -8.615850e-47 |
| Msa1154320 | Msa1381010 | 0.801279 | 9.703294e-49 | -8.615850e-47 |
| Msa1156710 | Msa1381010 | 0.853638 | 2.093615e-61 | -8.615850e-47 |
| Msa1156730 | Msa1381010 | 0.807777 | 4.283582e-50 | -8.615850e-47 |
| Msa1160540 | Msa1381010 | 0.831029 | 2.104552e-55 | -8.615850e-47 |
| Msa1165460 | Msa1381010 | 0.835334 | 1.782194e-56 | -8.615850e-47 |
| Msa1179190 | Msa1381010 | 0.832181 | 1.094275e-55 | -8.615850e-47 |
| Msa1192360 | Msa1381010 | 0.817149 | 3.830915e-52 | -8.615850e-47 |
| Msa1203650 | Msa1381010 | 0.803987 | 2.681151e-49 | -8.615850e-47 |
| Msa1206920 | Msa1381010 | 0.874651 | 5.716977e-68 | -8.615850e-47 |
| Msa0487110 | Msa1381010 | 0.836887 | 7.191229e-57 | -8.615850e-47 |
| Msa0501080 | Msa1381010 | 0.801677 | 8.044005e-49 | -8.615850e-47 |
| Msa0523550 | Msa1381010 | 0.998916 | 9.895301e-282 | -8.615850e-47 |
| Msa0523570 | Msa1381010 | 0.800078 | 1.705914e-48 | -8.615850e-47 |
| Msa0540640 | Msa1381010 | 0.805507 | 1.291116e-49 | -8.615850e-47 |
| Msa0549170 | Msa1381010 | 0.803716 | 3.052210e-49 | -8.615850e-47 |
| Msa0549960 | Msa1381010 | 0.846875 | 1.649971e-59 | -8.615850e-47 |
| Msa0549970 | Msa1381010 | 0.837374 | 5.398252e-57 | -8.615850e-47 |
| Msa0556720 | Msa1381010 | 0.800616 | 1.325691e-48 | -8.615850e-47 |
| Msa0565700 | Msa1381010 | 0.812943 | 3.287365e-51 | -8.615850e-47 |
| Msa0567330 | Msa1381010 | 0.867677 | 1.147508e-65 | -8.615850e-47 |
| Msa0567570 | Msa1381010 | 0.862212 | 5.946385e-64 | -8.615850e-47 |
| Msa0576320 | Msa1381010 | 0.866446 | 2.835047e-65 | -8.615850e-47 |
| Msa0851760 | Msa1381010 | 0.803322 | 3.684080e-49 | -8.615850e-47 |
| Msa0853080 | Msa1381010 | 0.807118 | 5.907910e-50 | -8.615850e-47 |
| Msa0865420 | Msa1381010 | 0.800159 | 1.642468e-48 | -8.615850e-47 |
| Msa0880910 | Msa1381010 | 0.862567 | 4.626390e-64 | -8.615850e-47 |
| Msa0882780 | Msa1381010 | 0.813026 | 3.152840e-51 | -8.615850e-47 |
| Msa0909260 | Msa1381010 | 0.860814 | 1.589166e-63 | -8.615850e-47 |
| Msa0910170 | Msa1381010 | 0.805954 | 1.040124e-49 | -8.615850e-47 |
| Msa0931680 | Msa1381010 | 0.805720 | 1.164601e-49 | -8.615850e-47 |
| Msa0932140 | Msa1381010 | 0.800306 | 1.533422e-48 | -8.615850e-47 |
| Msa0967780 | Msa1381010 | 0.852514 | 4.392615e-61 | -8.615850e-47 |
| Msa0968180 | Msa1381010 | 0.991989 | 1.133686e-190 | -8.615850e-47 |
| Msa0970270 | Msa1381010 | 0.807426 | 5.083914e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1381010 | MtrunA17_Chr3g0144471 | 85.714 | 350 | 41 | 3 | 16 | 362 | 16 | 359 | 0.0 | 555 |
| Msa1381010 | MtrunA17_Chr3g0090451 | 64.844 | 384 | 111 | 4 | 1 | 360 | 1 | 384 | 5.08e-148 | 431 |
| Msa1381010 | MtrunA17_Chr3g0090451 | 69.686 | 287 | 80 | 3 | 81 | 361 | 308 | 593 | 5.96e-128 | 379 |
| Msa1381010 | MtrunA17_Chr3g0090451 | 70.070 | 284 | 78 | 2 | 85 | 361 | 258 | 541 | 9.50e-128 | 379 |
| Msa1381010 | MtrunA17_Chr3g0090471 | 53.102 | 403 | 125 | 5 | 16 | 360 | 16 | 412 | 6.44e-124 | 365 |
| Msa1381010 | MtrunA17_Chr3g0090471 | 62.366 | 279 | 99 | 2 | 88 | 360 | 186 | 464 | 9.87e-111 | 331 |
| Msa1381010 | MtrunA17_Chr3g0090471 | 57.770 | 296 | 116 | 4 | 47 | 340 | 178 | 466 | 2.15e-102 | 310 |
| Msa1381010 | MtrunA17_Chr3g0090471 | 54.639 | 97 | 40 | 1 | 269 | 361 | 57 | 153 | 1.53e-20 | 92.4 |
| Msa1381010 | MtrunA17_Chr3g0144461 | 57.702 | 383 | 135 | 6 | 1 | 360 | 1 | 379 | 3.06e-123 | 362 |
| Msa1381010 | MtrunA17_Chr3g0144461 | 58.077 | 260 | 106 | 2 | 79 | 337 | 173 | 430 | 3.69e-89 | 275 |
| Msa1381010 | MtrunA17_Chr3g0138221 | 49.714 | 350 | 154 | 4 | 17 | 360 | 17 | 350 | 2.82e-99 | 302 |
| Msa1381010 | MtrunA17_Chr3g0138221 | 49.643 | 280 | 139 | 2 | 85 | 362 | 199 | 478 | 7.00e-80 | 252 |
| Msa1381010 | MtrunA17_Chr3g0138221 | 49.296 | 284 | 138 | 2 | 85 | 362 | 147 | 430 | 5.36e-79 | 250 |
| Msa1381010 | MtrunA17_Chr4g0034831 | 35.233 | 386 | 189 | 17 | 18 | 361 | 19 | 385 | 3.60e-47 | 164 |
| Msa1381010 | MtrunA17_Chr4g0034831 | 33.520 | 358 | 183 | 12 | 19 | 362 | 20 | 336 | 3.39e-43 | 154 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 70 sgRNAs with CRISPR-Local
Find 193 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTGGTTCAAAATCTTTAT+TGG | 0.220637 | tig0020421:+24606 | None:intergenic |
| TCTTGGTTCAAAATCTTTAT+TGG | 0.225126 | tig0020421:+24450 | None:intergenic |
| TCTTGGTTCAAAATCTTTAT+TGG | 0.225126 | tig0020421:+24528 | None:intergenic |
| AGACCTAACATTTCAGCTTA+TGG | 0.239620 | tig0020421:-24274 | Msa1381010:CDS |
| AGACCCAATGTTTCAGCTTA+TGG | 0.248284 | tig0020421:-24508 | Msa1381010:CDS |
| AGACCCAATGTTTCAGCTTA+TGG | 0.248284 | tig0020421:-24664 | Msa1381010:CDS |
| AGACCCAATGTTTCAGCTTA+TGG | 0.248284 | tig0020421:-24820 | Msa1381010:CDS |
| AGACCTAATGTTTCAGCTTA+TGG | 0.249885 | tig0020421:-24898 | Msa1381010:CDS |
| TGTAGAATCAAGAAAAGATT+TGG | 0.250935 | tig0020421:-25214 | Msa1381010:CDS |
| GACCTAACATTTCAGCTTAT+GGG | 0.310475 | tig0020421:-24273 | Msa1381010:CDS |
| AGGTCTTGGTTCAAAATCTT+TGG | 0.310679 | tig0020421:+24291 | None:intergenic |
| CATTTATGCATCATATTTAG+TGG | 0.320826 | tig0020421:+24198 | None:intergenic |
| GTTCCATAAGCTGAAACATT+AGG | 0.327800 | tig0020421:+24895 | None:intergenic |
| AAACAATTACATTGATGTTA+TGG | 0.330758 | tig0020421:-24329 | Msa1381010:CDS |
| ATATTTAGTGGCACTTGGTC+GGG | 0.347002 | tig0020421:+24210 | None:intergenic |
| AGACAATCGTGTTGAAGTTA+AGG | 0.379767 | tig0020421:-24719 | Msa1381010:CDS |
| AGACAATGGTATTGATGTTA+AGG | 0.392683 | tig0020421:-24485 | Msa1381010:CDS |
| AGACAATGGTATTGATGTTA+AGG | 0.392683 | tig0020421:-24641 | Msa1381010:CDS |
| ATTGATGTTAAGGAAAATAA+AGG | 0.395870 | tig0020421:-24475 | Msa1381010:CDS |
| ATTGATGTTAAGGAAAATAA+AGG | 0.395870 | tig0020421:-24631 | Msa1381010:CDS |
| AGACCCAATGTTTCAGCATA+TGG | 0.405735 | tig0020421:-24430 | Msa1381010:CDS |
| ATGAATGATGTCATTGTCTA+TGG | 0.405969 | tig0020421:+25032 | None:intergenic |
| ATTGATGTTACAGAAAATAA+AGG | 0.415243 | tig0020421:-24553 | Msa1381010:CDS |
| ACACCCAATGTTTCAGCATA+TGG | 0.418154 | tig0020421:-24742 | Msa1381010:CDS |
| TCTCCATATGCTGAAATGTT+TGG | 0.423109 | tig0020421:+24583 | None:intergenic |
| GTAGAATCAAGAAAAGATTT+GGG | 0.427549 | tig0020421:-25213 | Msa1381010:CDS |
| TATGCTGAAACATTGGGTCT+TGG | 0.433141 | tig0020421:+24355 | None:intergenic |
| TAAGCTGAAACATTGGGTCT+TGG | 0.435355 | tig0020421:+24667 | None:intergenic |
| TATGCTGAAATGTTTGGTCT+TGG | 0.439257 | tig0020421:+24589 | None:intergenic |
| GACAATCGTGTTGAAGTTAA+GGG | 0.442091 | tig0020421:-24718 | Msa1381010:CDS |
| AGACCAAACATTTCAGCATA+TGG | 0.445583 | tig0020421:-24586 | Msa1381010:CDS |
| CATATTTAGTGGCACTTGGT+CGG | 0.446372 | tig0020421:+24209 | None:intergenic |
| GTCTCCATATGCTGAAACAT+TGG | 0.449066 | tig0020421:+24426 | None:intergenic |
| TAAGCTGAAATGTTAGGTCT+TGG | 0.458122 | tig0020421:+24277 | None:intergenic |
| TAAGCTGAAACATTAGGTCT+TGG | 0.463292 | tig0020421:+24901 | None:intergenic |
| TAAGCTGAAACATTGGGTCT+TGG | 0.464372 | tig0020421:+24511 | None:intergenic |
| TAAGCTGAAACATTGGGTCT+TGG | 0.464372 | tig0020421:+24823 | None:intergenic |
| TATGAAGATAATAACATTGA+GGG | 0.464536 | tig0020421:-24952 | Msa1381010:CDS |
| AAACCTTTGAAAGACTGCTT+CGG | 0.465281 | tig0020421:+25099 | None:intergenic |
| ATTCATGCTAAGAGAAAGAA+AGG | 0.472696 | tig0020421:-25015 | Msa1381010:CDS |
| TATGCTGAAACATTGGGTCT+TGG | 0.475638 | tig0020421:+24433 | None:intergenic |
| TCTCCATATGCTGAAACATT+GGG | 0.476305 | tig0020421:+24427 | None:intergenic |
| AACAAATGAAATTGATGCTA+AGG | 0.478202 | tig0020421:-24875 | Msa1381010:CDS |
| GTCTCCATAAGCTGAAACAT+TGG | 0.487144 | tig0020421:+24504 | None:intergenic |
| GTCTCCATAAGCTGAAACAT+TGG | 0.487144 | tig0020421:+24660 | None:intergenic |
| GTCTCCATAAGCTGAAACAT+TGG | 0.487144 | tig0020421:+24816 | None:intergenic |
| TCCCCATAAGCTGAAATGTT+AGG | 0.487972 | tig0020421:+24271 | None:intergenic |
| TATTTAGTGGCACTTGGTCG+GGG | 0.498218 | tig0020421:+24211 | None:intergenic |
| TCTCCATAAGCTGAAACATT+GGG | 0.499953 | tig0020421:+24505 | None:intergenic |
| TCTCCATAAGCTGAAACATT+GGG | 0.499953 | tig0020421:+24661 | None:intergenic |
| TCTCCATAAGCTGAAACATT+GGG | 0.499953 | tig0020421:+24817 | None:intergenic |
| GTCTCCATATGCTGAAACAT+TGG | 0.510420 | tig0020421:+24738 | None:intergenic |
| GCATCATATTTAGTGGCACT+TGG | 0.527772 | tig0020421:+24205 | None:intergenic |
| AATTGATGCTAAGGAAAAGA+AGG | 0.533314 | tig0020421:-24866 | Msa1381010:CDS |
| AGGGGCAACAAAGCAAGAGC+AGG | 0.535358 | tig0020421:+27510 | None:intergenic |
| ACTCCGAAGCAGTCTTTCAA+AGG | 0.542773 | tig0020421:-25102 | Msa1381010:CDS |
| TCTCCATATGCTGAAACATT+GGG | 0.551421 | tig0020421:+24739 | None:intergenic |
| ACCTAACATTTCAGCTTATG+GGG | 0.562671 | tig0020421:-24272 | Msa1381010:CDS |
| GACATGCGAAAAGAAATTCA+AGG | 0.567894 | tig0020421:-25159 | Msa1381010:CDS |
| GTTTCAGCTTATGGAGACAA+TGG | 0.577650 | tig0020421:-24499 | Msa1381010:CDS |
| GTTTCAGCTTATGGAGACAA+TGG | 0.577650 | tig0020421:-24655 | Msa1381010:CDS |
| ATATGAAGATAATAACATTG+AGG | 0.587671 | tig0020421:-24953 | Msa1381010:CDS |
| TATGCTGAAACATTGGGTGT+TGG | 0.621863 | tig0020421:+24745 | None:intergenic |
| ACATGCGAAAAGAAATTCAA+GGG | 0.625015 | tig0020421:-25158 | Msa1381010:CDS |
| TATTGATGTTGAATTCACAA+AGG | 0.628277 | tig0020421:-24242 | Msa1381010:CDS |
| ACTTGTGTGTCTATTACAAG+TGG | 0.633990 | tig0020421:+25057 | None:intergenic |
| ACATACCAAGAAAAGCAAGA+GGG | 0.652569 | tig0020421:+27491 | None:intergenic |
| CATACCAAGAAAAGCAAGAG+GGG | 0.655694 | tig0020421:+27492 | None:intergenic |
| AACATACCAAGAAAAGCAAG+AGG | 0.668669 | tig0020421:+27490 | None:intergenic |
| AAGTCAGACACATACAGCAG+AGG | 0.686329 | tig0020421:-27554 | Msa1381010:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATAAAATAATTATATTTA+AGG | + | tig0020421:25564-25583 | None:intergenic | 0.0% |
| !! | AATTAAATGTAAAATATAAG+AGG | + | tig0020421:24366-24385 | None:intergenic | 10.0% |
| !!! | AAGATTTAAAAATGATTTTA+TGG | + | tig0020421:24465-24484 | None:intergenic | 10.0% |
| !! | AATATATACCTATATATAAA+GGG | + | tig0020421:25215-25234 | None:intergenic | 10.0% |
| !! | AATGTAAAATCTTATTATAA+TGG | + | tig0020421:25269-25288 | None:intergenic | 10.0% |
| !!! | TCAAAAAAAAAATCATTTTT+TGG | + | tig0020421:25443-25462 | None:intergenic | 10.0% |
| !!! | AAAAATGATTTTTTTTTTGA+TGG | - | tig0020421:25443-25462 | Msa1381010:intron | 10.0% |
| !!! | TTTTATTTTTATTTTGCTAT+TGG | + | tig0020421:25689-25708 | None:intergenic | 10.0% |
| !!! | TGACTTATTTTATATTTTGA+TGG | + | tig0020421:24212-24231 | None:intergenic | 15.0% |
| !! | AATAAAATCTTCATCTAATT+GGG | + | tig0020421:24804-24823 | None:intergenic | 15.0% |
| !! | AAATAAAATCTTCATCTAAT+TGG | + | tig0020421:24805-24824 | None:intergenic | 15.0% |
| !!! | AAACTTTTAATTAAGAAAGT+TGG | + | tig0020421:25099-25118 | None:intergenic | 15.0% |
| !! | ATATATACCTATATATAAAG+GGG | + | tig0020421:25214-25233 | None:intergenic | 15.0% |
| !! | CAATATATACCTATATATAA+AGG | + | tig0020421:25216-25235 | None:intergenic | 15.0% |
| !!! | ATTTTTTGGTAAATCAAAAA+CGG | + | tig0020421:25429-25448 | None:intergenic | 15.0% |
| !!! | CTAATTGAGATATTTTTTTA+AGG | + | tig0020421:25953-25972 | None:intergenic | 15.0% |
| !! | CTTAAAAAAATATCTCAATT+AGG | - | tig0020421:25951-25970 | Msa1381010:intron | 15.0% |
| !!! | ATTTTATATTTTGATGGAAG+TGG | + | tig0020421:24206-24225 | None:intergenic | 20.0% |
| !!! | TTGAACAATTATTTTCTTGT+TGG | - | tig0020421:24384-24403 | Msa1381010:CDS | 20.0% |
| !! | TATAATCACTAACATCAAAA+TGG | - | tig0020421:24506-24525 | Msa1381010:CDS | 20.0% |
| !! | ATAATCACTAACATCAAAAT+GGG | - | tig0020421:24507-24526 | Msa1381010:CDS | 20.0% |
| !! | TTATATTGTTCATATTGAAG+TGG | - | tig0020421:24823-24842 | Msa1381010:CDS | 20.0% |
| !! | TATCTTCTAATTATACCATT+CGG | + | tig0020421:24943-24962 | None:intergenic | 20.0% |
| !!! | GTTGAATCTTTATTTAATTG+TGG | + | tig0020421:25023-25042 | None:intergenic | 20.0% |
| !! | TAATAAGAATAGTTAACGAA+GGG | - | tig0020421:25149-25168 | Msa1381010:CDS | 20.0% |
| !! | TACTTCAAGAATATTAGATA+TGG | + | tig0020421:26003-26022 | None:intergenic | 20.0% |
| !! | ATAAATTGGATCCTAAAATT+TGG | + | tig0020421:26134-26153 | None:intergenic | 20.0% |
| !!! | ATTTTAGGATCCAATTTATT+AGG | - | tig0020421:26135-26154 | Msa1381010:intron | 20.0% |
| !!! | TAACTTGTATCCTAATAAAT+TGG | + | tig0020421:26148-26167 | None:intergenic | 20.0% |
| !! | TATTAGGATACAAGTTAATA+TGG | - | tig0020421:26151-26170 | Msa1381010:intron | 20.0% |
| !! | AAATTATTTCCTAACCAAAA+AGG | + | tig0020421:26427-26446 | None:intergenic | 20.0% |
| !! | TAAGACATAAGAAAAAGTAA+TGG | + | tig0020421:26511-26530 | None:intergenic | 20.0% |
| !!! | TCTTCATATTTTGAAACATT+GGG | + | tig0020421:26816-26835 | None:intergenic | 20.0% |
| !!! | ATCTTCATATTTTGAAACAT+TGG | + | tig0020421:26817-26836 | None:intergenic | 20.0% |
| !! | ATATGAAGATAATAACATTG+AGG | - | tig0020421:26827-26846 | Msa1381010:intron | 20.0% |
| !! | TATGAAGATAATAACATTGA+GGG | - | tig0020421:26828-26847 | Msa1381010:intron | 20.0% |
| !! | ATTGATGTTAAGGAAAATAA+AGG | - | tig0020421:27149-27168 | Msa1381010:intron | 20.0% |
| !! | ATTGATGTTACAGAAAATAA+AGG | - | tig0020421:27227-27246 | Msa1381010:intron | 20.0% |
| !! | ATTGATGTTAAGGAAAATAA+AGG | - | tig0020421:27149-27168 | Msa1381010:intron | 20.0% |
| !! | AAACAATTACATTGATGTTA+TGG | - | tig0020421:27451-27470 | Msa1381010:intron | 20.0% |
| ! | ATCGATTAACTTTCAGTATT+CGG | + | tig0020421:24430-24449 | None:intergenic | 25.0% |
| !! | TGTGATCAAACCAAAATTTT+TGG | + | tig0020421:24567-24586 | None:intergenic | 25.0% |
| ! | ATTAGAATAGTTTAACCGAA+TGG | - | tig0020421:24925-24944 | Msa1381010:CDS | 25.0% |
| ! | GTAATAAGAATAGTTAACGA+AGG | - | tig0020421:25148-25167 | Msa1381010:CDS | 25.0% |
| !! | TAAAGGGGATATATGATTTT+AGG | + | tig0020421:25199-25218 | None:intergenic | 25.0% |
| ! | CATATATCCCCTTTATATAT+AGG | - | tig0020421:25204-25223 | Msa1381010:CDS | 25.0% |
| !!! | ATTTTTTTTTTGATGGTGTC+TGG | - | tig0020421:25450-25469 | Msa1381010:intron | 25.0% |
| !!! | TTTTTTTTTTGATGGTGTCT+GGG | - | tig0020421:25451-25470 | Msa1381010:intron | 25.0% |
| !!! | TTTTTATTTTGCTATTGGTC+AGG | + | tig0020421:25684-25703 | None:intergenic | 25.0% |
| ! | TTAGGTAGATTAATCTTAAG+TGG | + | tig0020421:25854-25873 | None:intergenic | 25.0% |
| !! | TCAACGATTTTCCAAATTTT+AGG | - | tig0020421:26120-26139 | Msa1381010:intron | 25.0% |
| ! | GGAAAAAACACTCATAATTA+GGG | + | tig0020421:26406-26425 | None:intergenic | 25.0% |
| ! | AGGAAAAAACACTCATAATT+AGG | + | tig0020421:26407-26426 | None:intergenic | 25.0% |
| !!! | TATGAGTGTTTTTTCCTTTT+TGG | - | tig0020421:26410-26429 | Msa1381010:intron | 25.0% |
| ! | TGTAGAATCAAGAAAAGATT+TGG | - | tig0020421:26566-26585 | Msa1381010:intron | 25.0% |
| ! | GTAGAATCAAGAAAAGATTT+GGG | - | tig0020421:26567-26586 | Msa1381010:intron | 25.0% |
| ! | AACAAATGAAATTGATGCTA+AGG | - | tig0020421:26905-26924 | Msa1381010:intron | 25.0% |
| ! | TATTGATGCTAAGAAAAAGA+AGG | - | tig0020421:26992-27011 | Msa1381010:intron | 25.0% |
| ! | TCTTGGTTCAAAATCTTTAT+TGG | + | tig0020421:27177-27196 | None:intergenic | 25.0% |
| ! | TCTTGGTTCAAAATCTTTAT+TGG | + | tig0020421:27177-27196 | None:intergenic | 25.0% |
| ! | TCTTGGTTCAAAATCTTTAT+TGG | + | tig0020421:27177-27196 | None:intergenic | 25.0% |
| !! | TTTTCATATGCTGAAACATT+GGG | + | tig0020421:27434-27453 | None:intergenic | 25.0% |
| ! | TATTGATGTTGAATTCACAA+AGG | - | tig0020421:27538-27557 | Msa1381010:exon | 25.0% |
| ATTGTCGAGAAAATCTTGTA+TGG | - | tig0020421:24534-24553 | Msa1381010:CDS | 30.0% | |
| GACAATGCATAATATATGCA+AGG | + | tig0020421:25503-25522 | None:intergenic | 30.0% | |
| ! | AAAAAGTATACGACTCACAT+TGG | - | tig0020421:25601-25620 | Msa1381010:intron | 30.0% |
| AAAACATTCAAGTGAGTGTT+GGG | - | tig0020421:25656-25675 | Msa1381010:intron | 30.0% | |
| !! | TTTTAAGGATTCGTTATCTC+AGG | + | tig0020421:25938-25957 | None:intergenic | 30.0% |
| TTTCACCAGTTTGAGAAAAT+AGG | - | tig0020421:26070-26089 | Msa1381010:intron | 30.0% | |
| ! | AATGTCCTATTTTCTCAAAC+TGG | + | tig0020421:26078-26097 | None:intergenic | 30.0% |
| GAGAAAATAGGACATTCTTA+AGG | - | tig0020421:26082-26101 | Msa1381010:intron | 30.0% | |
| TAGGATACAAGTTAATATGG+TGG | - | tig0020421:26154-26173 | Msa1381010:intron | 30.0% | |
| !! | TGAACTTCATAAGAAGTGTT+GGG | + | tig0020421:26218-26237 | None:intergenic | 30.0% |
| ! | TTGAACTTCATAAGAAGTGT+TGG | + | tig0020421:26219-26238 | None:intergenic | 30.0% |
| TAACCAATAACATGTTTACC+CGG | - | tig0020421:26327-26346 | Msa1381010:intron | 30.0% | |
| !!! | GTGTTTTTTCCTTTTTGGTT+AGG | - | tig0020421:26415-26434 | Msa1381010:intron | 30.0% |
| GTCTATATGTACAGTAAAGT+TGG | + | tig0020421:26489-26508 | None:intergenic | 30.0% | |
| ACATGCGAAAAGAAATTCAA+GGG | - | tig0020421:26622-26641 | Msa1381010:intron | 30.0% | |
| ATGAATGATGTCATTGTCTA+TGG | + | tig0020421:26751-26770 | None:intergenic | 30.0% | |
| ATTCATGCTAAGAGAAAGAA+AGG | - | tig0020421:26765-26784 | Msa1381010:intron | 30.0% | |
| !!! | TATTTTGAAACATTGGGTCT+TGG | + | tig0020421:26810-26829 | None:intergenic | 30.0% |
| AATTGATGCTAAGGAAAAGA+AGG | - | tig0020421:26914-26933 | Msa1381010:intron | 30.0% | |
| !! | AGACAATGGTATTGATGTTA+AGG | - | tig0020421:27139-27158 | Msa1381010:intron | 30.0% |
| !! | AGACAATGGTATTGATGTTA+AGG | - | tig0020421:27139-27158 | Msa1381010:intron | 30.0% |
| ! | GTTTTCATATGCTGAAACAT+TGG | + | tig0020421:27435-27454 | None:intergenic | 30.0% |
| ACATACCAAGAAAAGCAAGA+GGG | + | tig0020421:24292-24311 | None:intergenic | 35.0% | |
| AACATACCAAGAAAAGCAAG+AGG | + | tig0020421:24293-24312 | None:intergenic | 35.0% | |
| !!! | CAAACCAAAATTTTTGGTCC+TGG | + | tig0020421:24561-24580 | None:intergenic | 35.0% |
| GAAAGAGAAGAGAGAGAAAA+TGG | + | tig0020421:24631-24650 | None:intergenic | 35.0% | |
| TGTGACCAAACCAAAATTCT+TGG | - | tig0020421:24675-24694 | Msa1381010:CDS | 35.0% | |
| AATAACGAGAAACACTTGTG+TGG | + | tig0020421:24708-24727 | None:intergenic | 35.0% | |
| TTGTGCAATACGAAAGCAAA+AGG | + | tig0020421:24736-24755 | None:intergenic | 35.0% | |
| ! | TGTGAAGAGTTGCATGATTT+TGG | + | tig0020421:24976-24995 | None:intergenic | 35.0% |
| CTTCACACAGATGTATAGAT+AGG | - | tig0020421:24989-25008 | Msa1381010:CDS | 35.0% | |
| !!! | CCTTTTTTTTGAGGGATCAA+GGG | + | tig0020421:25369-25388 | None:intergenic | 35.0% |
| !!! | ACCTTTTTTTTGAGGGATCA+AGG | + | tig0020421:25370-25389 | None:intergenic | 35.0% |
| !!! | TCAAGGGACCTTTTTTTTGA+GGG | + | tig0020421:25377-25396 | None:intergenic | 35.0% |
| ATGGACCTAATAATGGTCAA+GGG | + | tig0020421:25393-25412 | None:intergenic | 35.0% | |
| AATGGACCTAATAATGGTCA+AGG | + | tig0020421:25394-25413 | None:intergenic | 35.0% | |
| CAAAACATTCAAGTGAGTGT+TGG | - | tig0020421:25655-25674 | Msa1381010:intron | 35.0% | |
| ! | AAACATTCAAGTGAGTGTTG+GGG | - | tig0020421:25657-25676 | Msa1381010:intron | 35.0% |
| !!! | GGAGGAGATATTATTTTGAG+TGG | + | tig0020421:25833-25852 | None:intergenic | 35.0% |
| GGTAGATTAATCTTAAGTGG+AGG | + | tig0020421:25851-25870 | None:intergenic | 35.0% | |
| !! | TCGTTATCTCAGGTTGTTTT+AGG | + | tig0020421:25928-25947 | None:intergenic | 35.0% |
| !! | GAACTTCATAAGAAGTGTTG+GGG | + | tig0020421:26217-26236 | None:intergenic | 35.0% |
| GACATGCGAAAAGAAATTCA+AGG | - | tig0020421:26621-26640 | Msa1381010:intron | 35.0% | |
| !! | CTTGAGATTCTTTTTCGTCT+CGG | + | tig0020421:26658-26677 | None:intergenic | 35.0% |
| ! | AAACCTTTGAAAGACTGCTT+CGG | + | tig0020421:26684-26703 | None:intergenic | 35.0% |
| ACTTGTGTGTCTATTACAAG+TGG | + | tig0020421:26726-26745 | None:intergenic | 35.0% | |
| TAAGCTGAAACATTAGGTCT+TGG | + | tig0020421:26882-26901 | None:intergenic | 35.0% | |
| AGACCTAATGTTTCAGCTTA+TGG | - | tig0020421:26882-26901 | Msa1381010:intron | 35.0% | |
| GTTCCATAAGCTGAAACATT+AGG | + | tig0020421:26888-26907 | None:intergenic | 35.0% | |
| TCTCCATAAGCTGAAACATT+GGG | + | tig0020421:26966-26985 | None:intergenic | 35.0% | |
| TCTCCATATGCTGAAACATT+GGG | + | tig0020421:27044-27063 | None:intergenic | 35.0% | |
| AGACAATCGTGTTGAAGTTA+AGG | - | tig0020421:27061-27080 | Msa1381010:intron | 35.0% | |
| GACAATCGTGTTGAAGTTAA+GGG | - | tig0020421:27062-27081 | Msa1381010:intron | 35.0% | |
| TCTCCATAAGCTGAAACATT+GGG | + | tig0020421:26966-26985 | None:intergenic | 35.0% | |
| TATGCTGAAATGTTTGGTCT+TGG | + | tig0020421:27194-27213 | None:intergenic | 35.0% | |
| AGACCAAACATTTCAGCATA+TGG | - | tig0020421:27194-27213 | Msa1381010:intron | 35.0% | |
| TCTCCATATGCTGAAATGTT+TGG | + | tig0020421:27200-27219 | None:intergenic | 35.0% | |
| TCTCCATAAGCTGAAACATT+GGG | + | tig0020421:26966-26985 | None:intergenic | 35.0% | |
| TCTCCATATGCTGAAACATT+GGG | + | tig0020421:27044-27063 | None:intergenic | 35.0% | |
| AGGTCTTGGTTCAAAATCTT+TGG | + | tig0020421:27492-27511 | None:intergenic | 35.0% | |
| TAAGCTGAAATGTTAGGTCT+TGG | + | tig0020421:27506-27525 | None:intergenic | 35.0% | |
| AGACCTAACATTTCAGCTTA+TGG | - | tig0020421:27506-27525 | Msa1381010:CDS | 35.0% | |
| GACCTAACATTTCAGCTTAT+GGG | - | tig0020421:27507-27526 | Msa1381010:CDS | 35.0% | |
| ACCTAACATTTCAGCTTATG+GGG | - | tig0020421:27508-27527 | Msa1381010:CDS | 35.0% | |
| CATACCAAGAAAAGCAAGAG+GGG | + | tig0020421:24291-24310 | None:intergenic | 40.0% | |
| GAGAAAATCTTGTATGGACC+AGG | - | tig0020421:24540-24559 | Msa1381010:CDS | 40.0% | |
| ! | TGGACCAGGACCAAAAATTT+TGG | - | tig0020421:24554-24573 | Msa1381010:CDS | 40.0% |
| !!! | CAGGACCAAGAATTTTGGTT+TGG | + | tig0020421:24683-24702 | None:intergenic | 40.0% |
| CAAACCAAAATTCTTGGTCC+TGG | - | tig0020421:24681-24700 | Msa1381010:CDS | 40.0% | |
| CCCTTGATCCCTCAAAAAAA+AGG | - | tig0020421:25366-25385 | Msa1381010:intron | 40.0% | |
| !!! | GTCAAGGGACCTTTTTTTTG+AGG | + | tig0020421:25378-25397 | None:intergenic | 40.0% |
| AAGGTCCCTTGACCATTATT+AGG | - | tig0020421:25385-25404 | Msa1381010:intron | 40.0% | |
| CCATTATTAGGTCCATTGCA+CGG | - | tig0020421:25397-25416 | Msa1381010:intron | 40.0% | |
| CATAATATATGCAAGGTCCG+CGG | + | tig0020421:25496-25515 | None:intergenic | 40.0% | |
| TGACTCTCAGAGAGAACTTT+AGG | + | tig0020421:25872-25891 | None:intergenic | 40.0% | |
| GTTGGGGTTGAGATAAAATG+TGG | + | tig0020421:26201-26220 | None:intergenic | 40.0% | |
| TGAAGGTTTCCCTTGTATTC+TGG | + | tig0020421:26353-26372 | None:intergenic | 40.0% | |
| AGCGAACAATCATCTAGTGA+AGG | + | tig0020421:26370-26389 | None:intergenic | 40.0% | |
| TAAGCTGAAACATTGGGTCT+TGG | + | tig0020421:26960-26979 | None:intergenic | 40.0% | |
| AGACCCAATGTTTCAGCTTA+TGG | - | tig0020421:26960-26979 | Msa1381010:intron | 40.0% | |
| GTCTCCATAAGCTGAAACAT+TGG | + | tig0020421:26967-26986 | None:intergenic | 40.0% | |
| TATGCTGAAACATTGGGTGT+TGG | + | tig0020421:27038-27057 | None:intergenic | 40.0% | |
| ACACCCAATGTTTCAGCATA+TGG | - | tig0020421:27038-27057 | Msa1381010:intron | 40.0% | |
| GTCTCCATATGCTGAAACAT+TGG | + | tig0020421:27045-27064 | None:intergenic | 40.0% | |
| TAAGCTGAAACATTGGGTCT+TGG | + | tig0020421:26960-26979 | None:intergenic | 40.0% | |
| AGACCCAATGTTTCAGCTTA+TGG | - | tig0020421:26960-26979 | Msa1381010:intron | 40.0% | |
| GTCTCCATAAGCTGAAACAT+TGG | + | tig0020421:26967-26986 | None:intergenic | 40.0% | |
| GTTTCAGCTTATGGAGACAA+TGG | - | tig0020421:26969-26988 | Msa1381010:intron | 40.0% | |
| TAAGCTGAAACATTGGGTCT+TGG | + | tig0020421:26960-26979 | None:intergenic | 40.0% | |
| AGACCCAATGTTTCAGCTTA+TGG | - | tig0020421:26960-26979 | Msa1381010:intron | 40.0% | |
| GTCTCCATAAGCTGAAACAT+TGG | + | tig0020421:26967-26986 | None:intergenic | 40.0% | |
| GTTTCAGCTTATGGAGACAA+TGG | - | tig0020421:26969-26988 | Msa1381010:intron | 40.0% | |
| TATGCTGAAACATTGGGTCT+TGG | + | tig0020421:27350-27369 | None:intergenic | 40.0% | |
| AGACCCAATGTTTCAGCATA+TGG | - | tig0020421:27350-27369 | Msa1381010:intron | 40.0% | |
| GTCTCCATATGCTGAAACAT+TGG | + | tig0020421:27045-27064 | None:intergenic | 40.0% | |
| TATGCTGAAACATTGGGTCT+TGG | + | tig0020421:27350-27369 | None:intergenic | 40.0% | |
| TCCCCATAAGCTGAAATGTT+AGG | + | tig0020421:27512-27531 | None:intergenic | 40.0% | |
| ATATTTAGTGGCACTTGGTC+GGG | + | tig0020421:27573-27592 | None:intergenic | 40.0% | |
| CATATTTAGTGGCACTTGGT+CGG | + | tig0020421:27574-27593 | None:intergenic | 40.0% | |
| GCATCATATTTAGTGGCACT+TGG | + | tig0020421:27578-27597 | None:intergenic | 40.0% | |
| AAGTCAGACACATACAGCAG+AGG | - | tig0020421:24226-24245 | Msa1381010:CDS | 45.0% | |
| GAGAGAAGAGAAGAGAGAGA+AGG | + | tig0020421:24604-24623 | None:intergenic | 45.0% | |
| ! | TGGACCAGGACCAAGAATTT+TGG | + | tig0020421:24688-24707 | None:intergenic | 45.0% |
| CCGTGCAATGGACCTAATAA+TGG | + | tig0020421:25400-25419 | None:intergenic | 45.0% | |
| TTATTAGGTCCATTGCACGG+AGG | - | tig0020421:25400-25419 | Msa1381010:intron | 45.0% | |
| TGGCCGGGTAAACATGTTAT+TGG | + | tig0020421:26333-26352 | None:intergenic | 45.0% | |
| TTTACCCGGCCAGAATACAA+GGG | - | tig0020421:26341-26360 | Msa1381010:intron | 45.0% | |
| ACTCCGAAGCAGTCTTTCAA+AGG | - | tig0020421:26678-26697 | Msa1381010:intron | 45.0% | |
| TATTTAGTGGCACTTGGTCG+GGG | + | tig0020421:27572-27591 | None:intergenic | 45.0% | |
| !! | AACAAAAATAATAAATATTT+AGG | - | tig0020421:25342-25361 | Msa1381010:intron | 5.0% |
| !!! | TGTTATTTTTTATTTTTTTA+AGG | + | tig0020421:26254-26273 | None:intergenic | 5.0% |
| !! | GTTGCCCCTCTTGCTTTTCT+TGG | - | tig0020421:24284-24303 | Msa1381010:CDS | 50.0% |
| GAGAAACACTTGTGTGGACC+AGG | + | tig0020421:24702-24721 | None:intergenic | 50.0% | |
| AAACGGTATCCTCCGTGCAA+TGG | + | tig0020421:25412-25431 | None:intergenic | 50.0% | |
| !! | ATGGTGTCTGGGAAAGTGTC+TGG | - | tig0020421:25462-25481 | Msa1381010:intron | 50.0% |
| !! | TGGTGTCTGGGAAAGTGTCT+GGG | - | tig0020421:25463-25482 | Msa1381010:intron | 50.0% |
| !! | TTCCAACGAGCTTGCTAGCT+TGG | + | tig0020421:25539-25558 | None:intergenic | 50.0% |
| !! | GGTGGCTTGCTGCTTAGAAA+AGG | - | tig0020421:26172-26191 | Msa1381010:intron | 50.0% |
| CCTTCGAGACAATCTTCGTC+GGG | + | tig0020421:26291-26310 | None:intergenic | 50.0% | |
| CCCTTCGAGACAATCTTCGT+CGG | + | tig0020421:26292-26311 | None:intergenic | 50.0% | |
| CCGACGAAGATTGTCTCGAA+GGG | - | tig0020421:26289-26308 | Msa1381010:intron | 50.0% | |
| GTTTACCCGGCCAGAATACA+AGG | - | tig0020421:26340-26359 | Msa1381010:intron | 50.0% | |
| GTTTCCCTTGTATTCTGGCC+GGG | + | tig0020421:26348-26367 | None:intergenic | 50.0% | |
| GGTTTCCCTTGTATTCTGGC+CGG | + | tig0020421:26349-26368 | None:intergenic | 50.0% | |
| AGGGGCAACAAAGCAAGAGC+AGG | + | tig0020421:24273-24292 | None:intergenic | 55.0% | |
| !! | GGTGTCTGGGAAAGTGTCTG+GGG | - | tig0020421:25464-25483 | Msa1381010:intron | 55.0% |
| ! | AGTGTCTGGGGTTTGAACCG+CGG | - | tig0020421:25476-25495 | Msa1381010:intron | 55.0% |
| ! | GCTTGCTAGCTTGGCTAAGC+TGG | + | tig0020421:25530-25549 | None:intergenic | 55.0% |
| AGCCAAGCTAGCAAGCTCGT+TGG | - | tig0020421:25534-25553 | Msa1381010:intron | 55.0% | |
| CCCGACGAAGATTGTCTCGA+AGG | - | tig0020421:26288-26307 | Msa1381010:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0020421 | gene | 24201 | 27601 | 24201 | ID=Msa1381010;Name=Msa1381010 |
| tig0020421 | mRNA | 24201 | 27601 | 24201 | ID=Msa1381010-mRNA-1;Parent=Msa1381010;Name=Msa1381010-mRNA-1;_AED=0.23;_eAED=0.23;_QI=63|1|0.5|1|0|0.5|2|0|362 |
| tig0020421 | exon | 24201 | 25247 | 24201 | ID=Msa1381010-mRNA-1:exon:7361;Parent=Msa1381010-mRNA-1 |
| tig0020421 | exon | 27497 | 27601 | 27497 | ID=Msa1381010-mRNA-1:exon:7360;Parent=Msa1381010-mRNA-1 |
| tig0020421 | five_prime_UTR | 27539 | 27601 | 27539 | ID=Msa1381010-mRNA-1:five_prime_utr;Parent=Msa1381010-mRNA-1 |
| tig0020421 | CDS | 27497 | 27538 | 27497 | ID=Msa1381010-mRNA-1:cds;Parent=Msa1381010-mRNA-1 |
| tig0020421 | CDS | 24201 | 25247 | 24201 | ID=Msa1381010-mRNA-1:cds;Parent=Msa1381010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
