Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0766350 | sp|Q9S746|HTH_ARATH | 43.462 | 543 | 213 | 14 | 44 | 509 | 62 | 587 | 1.18e-131 | 398 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0766350 | G7KGL1 | 93.358 | 542 | 14 | 2 | 1 | 520 | 1 | 542 | 0.0 | 1025 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000050 | Msa0766350 | 0.831412 | 1.694065e-55 | -8.615850e-47 |
| Msa0002580 | Msa0766350 | 0.818226 | 2.189652e-52 | -8.615850e-47 |
| Msa0027820 | Msa0766350 | 0.819578 | 1.078988e-52 | -8.615850e-47 |
| Msa0090400 | Msa0766350 | 0.800444 | 1.436862e-48 | -8.615850e-47 |
| Msa0098040 | Msa0766350 | 0.802874 | 4.559496e-49 | -8.615850e-47 |
| Msa0108410 | Msa0766350 | 0.807006 | 6.240740e-50 | -8.615850e-47 |
| Msa0611210 | Msa0766350 | 0.809379 | 1.948298e-50 | -8.615850e-47 |
| Msa0626450 | Msa0766350 | 0.822966 | 1.784654e-53 | -8.615850e-47 |
| Msa0626490 | Msa0766350 | 0.816468 | 5.445362e-52 | -8.615850e-47 |
| Msa0651550 | Msa0766350 | 0.806840 | 6.765254e-50 | -8.615850e-47 |
| Msa0664600 | Msa0766350 | 0.817039 | 4.055061e-52 | -8.615850e-47 |
| Msa0725770 | Msa0766350 | 0.897375 | 1.494501e-76 | -8.615850e-47 |
| Msa0738700 | Msa0766350 | 0.811188 | 7.933348e-51 | -8.615850e-47 |
| Msa0741220 | Msa0766350 | 0.835354 | 1.761969e-56 | -8.615850e-47 |
| Msa0766350 | Msa0780270 | 0.802214 | 6.237879e-49 | -8.615850e-47 |
| Msa0766350 | Msa0795870 | 0.822821 | 1.929855e-53 | -8.615850e-47 |
| Msa0766350 | Msa0819170 | 0.803789 | 2.948407e-49 | -8.615850e-47 |
| Msa0766350 | Msa0829300 | 0.801770 | 7.698691e-49 | -8.615850e-47 |
| Msa0766350 | Msa0829330 | 0.811773 | 5.920744e-51 | -8.615850e-47 |
| Msa0766350 | Msa0833650 | 0.824081 | 9.792438e-54 | -8.615850e-47 |
| Msa0766350 | Msa0835490 | 0.801243 | 9.872018e-49 | -8.615850e-47 |
| Msa0766350 | Msa0859290 | 0.801735 | 7.824581e-49 | -8.615850e-47 |
| Msa0766350 | Msa0861850 | 0.805864 | 1.086653e-49 | -8.615850e-47 |
| Msa0766350 | Msa0967870 | 0.820158 | 7.950123e-53 | -8.615850e-47 |
| Msa0766350 | Msa1019470 | 0.804382 | 2.219319e-49 | -8.615850e-47 |
| Msa0766350 | Msa1044680 | 0.803716 | 3.052162e-49 | -8.615850e-47 |
| Msa0766350 | Msa1096960 | 0.810079 | 1.377448e-50 | -8.615850e-47 |
| Msa0766350 | Msa1132840 | 0.825890 | 3.663070e-54 | -8.615850e-47 |
| Msa0766350 | Msa1155170 | -0.822679 | 2.082295e-53 | -8.615850e-47 |
| Msa0766350 | Msa1200890 | 0.811364 | 7.263877e-51 | -8.615850e-47 |
| Msa0766350 | Msa1208950 | 0.804301 | 2.307343e-49 | -8.615850e-47 |
| Msa0766350 | Msa1225860 | -0.817772 | 2.772375e-52 | -8.615850e-47 |
| Msa0766350 | Msa1228200 | 0.803531 | 3.334741e-49 | -8.615850e-47 |
| Msa0766350 | Msa1236410 | 0.812095 | 5.036884e-51 | -8.615850e-47 |
| Msa0766350 | Msa1265650 | 0.818038 | 2.414567e-52 | -8.615850e-47 |
| Msa0766350 | Msa1297230 | 0.816651 | 4.954061e-52 | -8.615850e-47 |
| Msa0766350 | Msa1303560 | 0.820730 | 5.877737e-53 | -8.615850e-47 |
| Msa0766350 | Msa1303650 | 0.816181 | 6.311141e-52 | -8.615850e-47 |
| Msa0766350 | Msa1316330 | 0.800781 | 1.226741e-48 | -8.615850e-47 |
| Msa0766350 | Msa1397400 | 0.815522 | 8.854861e-52 | -8.615850e-47 |
| Msa0766350 | Msa1415540 | 0.801074 | 1.069026e-48 | -8.615850e-47 |
| Msa0766350 | Msa1420950 | 0.801526 | 8.639646e-49 | -8.615850e-47 |
| Msa0766350 | Msa1440960 | 0.817649 | 2.955579e-52 | -8.615850e-47 |
| Msa0766350 | Msa1449480 | 0.803558 | 3.291795e-49 | -8.615850e-47 |
| Msa0137880 | Msa0766350 | 0.801046 | 1.082856e-48 | -8.615850e-47 |
| Msa0158860 | Msa0766350 | 0.815780 | 7.756093e-52 | -8.615850e-47 |
| Msa0174450 | Msa0766350 | 0.827384 | 1.611676e-54 | -8.615850e-47 |
| Msa0182240 | Msa0766350 | 0.800529 | 1.380999e-48 | -8.615850e-47 |
| Msa0225100 | Msa0766350 | 0.845400 | 4.158791e-59 | -8.615850e-47 |
| Msa0225860 | Msa0766350 | 0.836764 | 7.730529e-57 | -8.615850e-47 |
| Msa0369790 | Msa0766350 | 0.819599 | 1.067027e-52 | -8.615850e-47 |
| Msa0378720 | Msa0766350 | 0.800626 | 1.319371e-48 | -8.615850e-47 |
| Msa0392380 | Msa0766350 | 0.805588 | 1.241881e-49 | -8.615850e-47 |
| Msa0436910 | Msa0766350 | 0.817574 | 3.073023e-52 | -8.615850e-47 |
| Msa0464000 | Msa0766350 | 0.819996 | 8.662196e-53 | -8.615850e-47 |
| Msa0472950 | Msa0766350 | 0.804362 | 2.240007e-49 | -8.615850e-47 |
| Msa0244640 | Msa0766350 | 0.833625 | 4.788285e-56 | -8.615850e-47 |
| Msa0260510 | Msa0766350 | 0.805201 | 1.496222e-49 | -8.615850e-47 |
| Msa0266180 | Msa0766350 | 0.846233 | 2.470953e-59 | -8.615850e-47 |
| Msa0267110 | Msa0766350 | 0.800770 | 1.233080e-48 | -8.615850e-47 |
| Msa0283330 | Msa0766350 | 0.826823 | 2.195524e-54 | -8.615850e-47 |
| Msa0287740 | Msa0766350 | 0.837930 | 3.887048e-57 | -8.615850e-47 |
| Msa0298470 | Msa0766350 | 0.809039 | 2.304168e-50 | -8.615850e-47 |
| Msa0321620 | Msa0766350 | 0.811682 | 6.196551e-51 | -8.615850e-47 |
| Msa0330380 | Msa0766350 | 0.815086 | 1.107020e-51 | -8.615850e-47 |
| Msa0339650 | Msa0766350 | 0.800215 | 1.600074e-48 | -8.615850e-47 |
| Msa0340500 | Msa0766350 | 0.816593 | 5.106389e-52 | -8.615850e-47 |
| Msa0484380 | Msa0766350 | 0.809738 | 1.630981e-50 | -8.615850e-47 |
| Msa0509550 | Msa0766350 | 0.818465 | 1.932605e-52 | -8.615850e-47 |
| Msa0519750 | Msa0766350 | 0.801268 | 9.755977e-49 | -8.615850e-47 |
| Msa0519820 | Msa0766350 | 0.802936 | 4.427266e-49 | -8.615850e-47 |
| Msa0519830 | Msa0766350 | 0.804194 | 2.427902e-49 | -8.615850e-47 |
| Msa0528570 | Msa0766350 | 0.813004 | 3.187396e-51 | -8.615850e-47 |
| Msa0530780 | Msa0766350 | 0.800616 | 1.325803e-48 | -8.615850e-47 |
| Msa0557460 | Msa0766350 | 0.806281 | 8.875756e-50 | -8.615850e-47 |
| Msa0580370 | Msa0766350 | 0.829396 | 5.271080e-55 | -8.615850e-47 |
| Msa0583360 | Msa0766350 | -0.814329 | 1.628305e-51 | -8.615850e-47 |
| Msa0597270 | Msa0766350 | 0.804680 | 1.923262e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0766350 | MtrunA17_Chr5g0417511 | 93.358 | 542 | 14 | 2 | 1 | 520 | 1 | 542 | 0.0 | 1025 |
| Msa0766350 | MtrunA17_Chr5g0398121 | 43.144 | 547 | 222 | 11 | 45 | 516 | 48 | 580 | 6.72e-139 | 413 |
| Msa0766350 | MtrunA17_Chr2g0330251 | 42.272 | 537 | 226 | 13 | 45 | 509 | 63 | 587 | 3.12e-129 | 389 |
| Msa0766350 | MtrunA17_Chr8g0342061 | 41.774 | 541 | 227 | 11 | 43 | 509 | 53 | 579 | 6.89e-128 | 385 |
| Msa0766350 | MtrunA17_Chr1g0203971 | 40.338 | 533 | 229 | 9 | 44 | 501 | 16 | 534 | 5.98e-126 | 378 |
| Msa0766350 | MtrunA17_Chr5g0398141 | 39.868 | 454 | 193 | 13 | 126 | 514 | 5 | 443 | 1.15e-95 | 297 |
| Msa0766350 | MtrunA17_Chr4g0000501 | 40.217 | 276 | 125 | 7 | 268 | 510 | 6 | 274 | 7.70e-57 | 191 |
| Msa0766350 | MtrunA17_Chr4g0000491 | 53.125 | 192 | 70 | 4 | 45 | 217 | 54 | 244 | 3.86e-53 | 180 |
| Msa0766350 | MtrunA17_Chr1g0203951 | 53.719 | 121 | 41 | 2 | 44 | 153 | 22 | 138 | 2.80e-37 | 134 |
| Msa0766350 | MtrunA17_Chr5g0398131 | 60.204 | 98 | 28 | 1 | 45 | 131 | 13 | 110 | 4.20e-31 | 116 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0766350 | AT1G14190.2 | 58.627 | 510 | 189 | 5 | 13 | 510 | 6 | 505 | 0.0 | 607 |
| Msa0766350 | AT1G14190.1 | 59.878 | 491 | 176 | 4 | 32 | 510 | 3 | 484 | 0.0 | 603 |
| Msa0766350 | AT1G14185.1 | 58.203 | 512 | 191 | 5 | 10 | 509 | 3 | 503 | 0.0 | 601 |
| Msa0766350 | AT5G51950.3 | 41.186 | 590 | 247 | 13 | 5 | 511 | 4 | 576 | 2.68e-133 | 399 |
| Msa0766350 | AT5G51950.1 | 41.216 | 592 | 246 | 14 | 5 | 511 | 4 | 578 | 3.46e-133 | 399 |
| Msa0766350 | AT5G51950.2 | 43.040 | 546 | 217 | 11 | 45 | 511 | 13 | 543 | 3.95e-133 | 397 |
| Msa0766350 | AT1G72970.1 | 43.462 | 543 | 213 | 14 | 44 | 509 | 62 | 587 | 1.20e-132 | 398 |
| Msa0766350 | AT1G73050.1 | 44.291 | 508 | 229 | 12 | 45 | 509 | 54 | 550 | 1.42e-129 | 389 |
| Msa0766350 | AT1G12570.1 | 40.522 | 575 | 248 | 14 | 13 | 509 | 10 | 568 | 1.59e-129 | 389 |
| Msa0766350 | AT3G56060.1 | 41.431 | 531 | 236 | 11 | 45 | 509 | 46 | 567 | 2.40e-129 | 389 |
| Msa0766350 | AT1G72970.2 | 43.977 | 523 | 212 | 12 | 44 | 509 | 62 | 560 | 5.57e-129 | 387 |
| Msa0766350 | AT5G51930.2 | 41.713 | 537 | 226 | 11 | 44 | 509 | 25 | 545 | 4.35e-119 | 362 |
| Msa0766350 | AT5G51930.1 | 41.556 | 527 | 221 | 11 | 44 | 499 | 72 | 582 | 1.08e-113 | 348 |
Find 103 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTATAGTTTGGAGCATATC+AGG | 0.227435 | 5_2:-27964720 | Msa0766350:CDS |
| ATCAGGGGAACCAAGATTTC+TGG | 0.241263 | 5_2:-27964703 | Msa0766350:CDS |
| ACAAGAACTGTGAGGTTCTT+TGG | 0.244938 | 5_2:+27964619 | None:intergenic |
| CTTGATTCATTGATGCTTAG+TGG | 0.272621 | 5_2:+27963510 | None:intergenic |
| CAGATTCAATTTCCCTTTGT+TGG | 0.286203 | 5_2:+27963049 | None:intergenic |
| CTACAAAGTTCATGGTATAA+AGG | 0.291989 | 5_2:-27963172 | Msa0766350:CDS |
| GCCCTACAATGGTTATAGTT+TGG | 0.297158 | 5_2:-27964731 | Msa0766350:CDS |
| TCATGGTATAAAGGGATTAA+AGG | 0.306133 | 5_2:-27963163 | Msa0766350:CDS |
| GGGAGTGTGTTTGATGGATT+TGG | 0.306485 | 5_2:-27964682 | Msa0766350:CDS |
| CCCCTTGAAGTTGAATGGTT+TGG | 0.336997 | 5_2:+27963786 | None:intergenic |
| GGTGGCTCATCAGCTATAAA+TGG | 0.349307 | 5_2:-27964922 | Msa0766350:CDS |
| CATCACCCCTTGAAGTTGAA+TGG | 0.386140 | 5_2:+27963781 | None:intergenic |
| TACAAAGTTCATGGTATAAA+GGG | 0.389378 | 5_2:-27963171 | Msa0766350:CDS |
| ATATTATCAGCAGGTGCATT+AGG | 0.405342 | 5_2:-27963756 | Msa0766350:CDS |
| ACTAGTTCATGAAATGAAAC+AGG | 0.408524 | 5_2:-27963667 | Msa0766350:CDS |
| GAAAGAGGTGGTTCACCATA+TGG | 0.411776 | 5_2:-27965072 | Msa0766350:CDS |
| CTCCAAACTATAACCATTGT+AGG | 0.417066 | 5_2:+27964729 | None:intergenic |
| CCTGATCCACCACAAATTGC+AGG | 0.417262 | 5_2:-27963576 | Msa0766350:CDS |
| GCACATGACTTCGGATGTTA+AGG | 0.420708 | 5_2:-27965196 | Msa0766350:CDS |
| TCATATGATTACATTATAGT+TGG | 0.421609 | 5_2:-27965159 | Msa0766350:CDS |
| AATGTGAGAGGAAGAGTTCT+TGG | 0.424602 | 5_2:-27964943 | Msa0766350:CDS |
| ATAGCAATGCCTCTTTCAAA+AGG | 0.425278 | 5_2:-27963468 | Msa0766350:CDS |
| TGAGTCACAACAAAGCAAAT+TGG | 0.425400 | 5_2:-27963295 | Msa0766350:CDS |
| GATCATTGTTGCTCAGTTCA+AGG | 0.428453 | 5_2:+27963442 | None:intergenic |
| CACTAAGCATCAATGAATCA+AGG | 0.429122 | 5_2:-27963509 | Msa0766350:CDS |
| TATAAAGGGATTAAAGGTAT+TGG | 0.432574 | 5_2:-27963157 | Msa0766350:CDS |
| AAACACACTCCCAGAAATCT+TGG | 0.435114 | 5_2:+27964693 | None:intergenic |
| TTCACAGCAGGGTTAAGCCT+TGG | 0.437687 | 5_2:+27963420 | None:intergenic |
| ATTTCTGGGAGTGTGTTTGA+TGG | 0.444120 | 5_2:-27964688 | Msa0766350:CDS |
| GAATTTAGTCTTCTCGAAAC+GGG | 0.449569 | 5_2:-27964760 | Msa0766350:CDS |
| GATAAAGACTACAAAGTTCA+TGG | 0.455678 | 5_2:-27963180 | Msa0766350:CDS |
| ATTACTAAGGGATTTCCATA+TGG | 0.457033 | 5_2:+27965057 | None:intergenic |
| TCTGTTATGCCTGCAATTTG+TGG | 0.462136 | 5_2:+27963567 | None:intergenic |
| GATGAATTTGTTGATAAAGT+TGG | 0.462185 | 5_2:-27964877 | Msa0766350:CDS |
| AACCAAACCATTCAACTTCA+AGG | 0.464351 | 5_2:-27963788 | Msa0766350:CDS |
| TCAGGGGAACCAAGATTTCT+GGG | 0.466094 | 5_2:-27964702 | Msa0766350:CDS |
| CCTGCAATTTGTGGTGGATC+AGG | 0.472565 | 5_2:+27963576 | None:intergenic |
| ATGGTTTGGTTTCTTGATGT+AGG | 0.472808 | 5_2:+27963800 | None:intergenic |
| GTTGGAGAATCTTGATACCT+TGG | 0.474801 | 5_2:+27963067 | None:intergenic |
| TGAATTTAGTCTTCTCGAAA+CGG | 0.479430 | 5_2:-27964761 | Msa0766350:CDS |
| ATTTGTTGATAAAGTTGGTT+GGG | 0.480078 | 5_2:-27964872 | Msa0766350:CDS |
| TTGTTAAAGAAGCTTATGAA+TGG | 0.481724 | 5_2:-27964840 | Msa0766350:CDS |
| CTTGATGAACTTGATACCCT+TGG | 0.485528 | 5_2:+27963854 | None:intergenic |
| TTCATAGTACTTGCAAATTG+TGG | 0.490761 | 5_2:-27965646 | Msa0766350:intron |
| TCAGCTGATCTTCTTGAGGC+TGG | 0.493708 | 5_2:-27964646 | Msa0766350:CDS |
| TCGGATGTTAAGGAAGTAGC+AGG | 0.494503 | 5_2:-27965186 | Msa0766350:CDS |
| CAAAGATTCACTTCAGAAGA+TGG | 0.495094 | 5_2:-27964973 | Msa0766350:CDS |
| TATGATTACATTATAGTTGG+AGG | 0.498016 | 5_2:-27965156 | Msa0766350:CDS |
| AGATAGTTGAATTTCACAGC+AGG | 0.506395 | 5_2:+27963408 | None:intergenic |
| TGTTAAAGAAGCTTATGAAT+GGG | 0.509588 | 5_2:-27964839 | Msa0766350:CDS |
| GTATCAAGATTCTCCAACAA+AGG | 0.511803 | 5_2:-27963062 | Msa0766350:CDS |
| AGAACTATCTATCACTATCA+TGG | 0.512229 | 5_2:-27963228 | Msa0766350:CDS |
| TGTTTCATTTCATGAACTAG+TGG | 0.512739 | 5_2:+27963669 | None:intergenic |
| TATCAAGATTCTCCAACAAA+GGG | 0.517558 | 5_2:-27963061 | Msa0766350:CDS |
| TATCATGGTGGTTGCAATGT+TGG | 0.521673 | 5_2:-27963213 | Msa0766350:CDS |
| ATCAAGTTCATCAAGAGTAA+TGG | 0.523595 | 5_2:-27963846 | Msa0766350:CDS |
| AATTTGTTGATAAAGTTGGT+TGG | 0.526334 | 5_2:-27964873 | Msa0766350:CDS |
| GTCACCAGGTACTAATCCTA+TGG | 0.527554 | 5_2:-27963115 | Msa0766350:CDS |
| TCTGATAGAGTAGCTGCTAA+AGG | 0.528626 | 5_2:+27965117 | None:intergenic |
| AGCATCATCTTTCATTACAA+TGG | 0.542353 | 5_2:-27964580 | Msa0766350:intron |
| GATAGTTGAATTTCACAGCA+GGG | 0.544877 | 5_2:+27963409 | None:intergenic |
| ACCAAACCATTCAACTTCAA+GGG | 0.551680 | 5_2:-27963787 | Msa0766350:CDS |
| TAGCAATGCCTCTTTCAAAA+GGG | 0.552326 | 5_2:-27963467 | Msa0766350:CDS |
| GTTATGCCTGCAATTTGTGG+TGG | 0.556647 | 5_2:+27963570 | None:intergenic |
| CAAGAATGAAACAAGGGCCA+AGG | 0.557798 | 5_2:-27963871 | Msa0766350:CDS |
| TTATAGTTTGGAGCATATCA+GGG | 0.558056 | 5_2:-27964719 | Msa0766350:CDS |
| GATGGTGTTAGCAATGTGAG+AGG | 0.558102 | 5_2:-27964955 | Msa0766350:CDS |
| GGTGATGTCATATTATCAGC+AGG | 0.568505 | 5_2:-27963765 | Msa0766350:CDS |
| GAAATGAAACAGGTTGGTCA+AGG | 0.573424 | 5_2:-27963657 | Msa0766350:CDS |
| TTATGAACATGTTTGATTTG+TGG | 0.574694 | 5_2:+27965694 | None:intergenic |
| TCAACTAAGATTGCTATGCA+AGG | 0.575435 | 5_2:+27963621 | None:intergenic |
| TCCAAACTATAACCATTGTA+GGG | 0.585018 | 5_2:+27964730 | None:intergenic |
| AACTGAGCAACAATGATCCA+AGG | 0.586972 | 5_2:-27963437 | Msa0766350:CDS |
| AATTACTCAATAAAATTGCA+AGG | 0.588567 | 5_2:-27963344 | Msa0766350:CDS |
| GATTACATTATAGTTGGAGG+AGG | 0.589082 | 5_2:-27965153 | Msa0766350:CDS |
| ACTAAGCATCAATGAATCAA+GGG | 0.592050 | 5_2:-27963508 | Msa0766350:CDS |
| GTTCATGAAATGAAACAGGT+TGG | 0.592262 | 5_2:-27963663 | Msa0766350:CDS |
| TAAAGAAGCTTATGAATGGG+TGG | 0.595958 | 5_2:-27964836 | Msa0766350:CDS |
| CAACTAAGATTGCTATGCAA+GGG | 0.598474 | 5_2:+27963622 | None:intergenic |
| GAGACAATGGCACATGACTT+CGG | 0.599235 | 5_2:-27965205 | Msa0766350:CDS |
| AAGGGATTAAAGGTATTGGA+TGG | 0.603189 | 5_2:-27963153 | Msa0766350:CDS |
| GGCTCATCAGCTATAAATGG+TGG | 0.608408 | 5_2:-27964919 | Msa0766350:CDS |
| AAGAATGAAACAAGGGCCAA+GGG | 0.609525 | 5_2:-27963870 | Msa0766350:CDS |
| TCTGTGCTACTAATAGAAAG+AGG | 0.610524 | 5_2:-27965087 | Msa0766350:CDS |
| GTGAGAGGAAGAGTTCTTGG+TGG | 0.618458 | 5_2:-27964940 | Msa0766350:CDS |
| CAGGTGACAAGAATGAAACA+AGG | 0.619494 | 5_2:-27963878 | Msa0766350:CDS |
| TACCTCAGCTGATCTTCTTG+AGG | 0.626186 | 5_2:-27964650 | Msa0766350:CDS |
| CCAAACCATTCAACTTCAAG+GGG | 0.628346 | 5_2:-27963786 | Msa0766350:CDS |
| ATAGTTGGAGGAGGTACATG+TGG | 0.636326 | 5_2:-27965144 | Msa0766350:CDS |
| ACAATGTAGGTAAGAGACAA+TGG | 0.639537 | 5_2:-27965218 | Msa0766350:intron |
| AGCATCAAAAGTGTAGCCAT+AGG | 0.642151 | 5_2:+27963099 | None:intergenic |
| TATAGTTTGGAGCATATCAG+GGG | 0.653579 | 5_2:-27964718 | Msa0766350:CDS |
| GTGCTACTAATAGAAAGAGG+TGG | 0.667477 | 5_2:-27965084 | Msa0766350:CDS |
| AGCCTCAAGAAGATCAGCTG+AGG | 0.672209 | 5_2:+27964648 | None:intergenic |
| AATTCAGCAACAGATTGCCA+TGG | 0.672603 | 5_2:+27964778 | None:intergenic |
| TGGTTGCAATGTTGGAACAG+TGG | 0.690046 | 5_2:-27963205 | Msa0766350:CDS |
| CGGATGTTAAGGAAGTAGCA+GGG | 0.691890 | 5_2:-27965185 | Msa0766350:CDS |
| GTAGCCATAGGATTAGTACC+TGG | 0.693537 | 5_2:+27963111 | None:intergenic |
| AGGTGACAAGAATGAAACAA+GGG | 0.696456 | 5_2:-27963877 | Msa0766350:CDS |
| TTGATGCTAGGAAGGTACCA+AGG | 0.703387 | 5_2:-27963084 | Msa0766350:CDS |
| ACTATCTATCACTATCATGG+TGG | 0.706690 | 5_2:-27963225 | Msa0766350:CDS |
| AAAGATGATGCTCTTCACTG+TGG | 0.719776 | 5_2:+27964591 | None:intergenic |
| TGGCATTTACAAGAACTGTG+AGG | 0.760804 | 5_2:+27964611 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTAACAAATTTGAAAAT+TGG | + | chr5_2:27965684-27965703 | None:intergenic | 10.0% |
| !! | AGAATAAATAAAGATATTTC+TGG | - | chr5_2:27963998-27964017 | Msa0766350:intron | 15.0% |
| !!! | AATTTTTTCAATTGTTCTTT+TGG | + | chr5_2:27964854-27964873 | None:intergenic | 15.0% |
| !! | TCATATGATTACATTATAGT+TGG | - | chr5_2:27963391-27963410 | Msa0766350:CDS | 20.0% |
| !! | TATCTTCTATCAATTACTAA+GGG | + | chr5_2:27963508-27963527 | None:intergenic | 20.0% |
| !! | AAATTTATGTAATAAGTGCA+AGG | - | chr5_2:27964021-27964040 | Msa0766350:intron | 20.0% |
| !! | AAGTTGAAGATTTCAAAAAA+CGG | - | chr5_2:27964462-27964481 | Msa0766350:intron | 20.0% |
| !!! | TTTTTATTGCTACTTATTCT+AGG | + | chr5_2:27964606-27964625 | None:intergenic | 20.0% |
| !! | AATTACTCAATAAAATTGCA+AGG | - | chr5_2:27965206-27965225 | Msa0766350:CDS | 20.0% |
| !!! | TTATGAACATGTTTGATTTG+TGG | + | chr5_2:27962859-27962878 | None:intergenic | 25.0% |
| ! | AACAAAAATACAACAAAGAG+AGG | + | chr5_2:27962883-27962902 | None:intergenic | 25.0% |
| ! | TATGAAACATCGATACAATA+TGG | + | chr5_2:27963199-27963218 | None:intergenic | 25.0% |
| !! | TTTCTTTTAAGCTTGAAACA+AGG | - | chr5_2:27963286-27963305 | Msa0766350:CDS | 25.0% |
| ! | TATGATTACATTATAGTTGG+AGG | - | chr5_2:27963394-27963413 | Msa0766350:CDS | 25.0% |
| ! | GTATCTTCTATCAATTACTA+AGG | + | chr5_2:27963509-27963528 | None:intergenic | 25.0% |
| ! | GTAATTGATAGAAGATACTA+TGG | - | chr5_2:27963511-27963530 | Msa0766350:CDS | 25.0% |
| !!! | GATGAATTTGTTGATAAAGT+TGG | - | chr5_2:27963673-27963692 | Msa0766350:CDS | 25.0% |
| !!! | AATTTGTTGATAAAGTTGGT+TGG | - | chr5_2:27963677-27963696 | Msa0766350:CDS | 25.0% |
| !! | ATTTGTTGATAAAGTTGGTT+GGG | - | chr5_2:27963678-27963697 | Msa0766350:CDS | 25.0% |
| ! | TTGTTAAAGAAGCTTATGAA+TGG | - | chr5_2:27963710-27963729 | Msa0766350:CDS | 25.0% |
| ! | TGTTAAAGAAGCTTATGAAT+GGG | - | chr5_2:27963711-27963730 | Msa0766350:CDS | 25.0% |
| ! | AAAATCATCGTCACAAAATA+GGG | + | chr5_2:27964054-27964073 | None:intergenic | 25.0% |
| ! | AAAAATCATCGTCACAAAAT+AGG | + | chr5_2:27964055-27964074 | None:intergenic | 25.0% |
| !!! | ATGATTTTTTTATGTCTCTG+TGG | - | chr5_2:27964066-27964085 | Msa0766350:intron | 25.0% |
| ! | ATCATCTTCCACAATTTAAA+GGG | - | chr5_2:27964176-27964195 | Msa0766350:intron | 25.0% |
| ! | TAGTTGCAATGTTCAAATTA+CGG | + | chr5_2:27964441-27964460 | None:intergenic | 25.0% |
| ! | GCAATTGCAATACAATTAAA+TGG | + | chr5_2:27964530-27964549 | None:intergenic | 25.0% |
| ! | AAGAAAAAATGCAATAGACT+TGG | + | chr5_2:27965233-27965252 | None:intergenic | 25.0% |
| !!! | AAGTCTATTGCATTTTTTCT+TGG | - | chr5_2:27965232-27965251 | Msa0766350:intron | 25.0% |
| !! | TTTTCTTGCAAAACTTTCTA+AGG | + | chr5_2:27965297-27965316 | None:intergenic | 25.0% |
| ! | TACAAAGTTCATGGTATAAA+GGG | - | chr5_2:27965379-27965398 | Msa0766350:intron | 25.0% |
| !! | TATAAAGGGATTAAAGGTAT+TGG | - | chr5_2:27965393-27965412 | Msa0766350:intron | 25.0% |
| ! | AATCAGTGTGTGAAAAAATA+AGG | - | chr5_2:27965576-27965595 | Msa0766350:intron | 25.0% |
| !! | ATTTTACAACACACTTTGTT+AGG | + | chr5_2:27965622-27965641 | None:intergenic | 25.0% |
| TTCATAGTACTTGCAAATTG+TGG | - | chr5_2:27962904-27962923 | Msa0766350:three_prime_UTR | 30.0% | |
| TTTGTCTGTTATGTTAGTCA+GGG | - | chr5_2:27963003-27963022 | Msa0766350:three_prime_UTR | 30.0% | |
| CAATTTCATTTCCACAATGT+AGG | - | chr5_2:27963319-27963338 | Msa0766350:CDS | 30.0% | |
| ATTACTAAGGGATTTCCATA+TGG | + | chr5_2:27963496-27963515 | None:intergenic | 30.0% | |
| TTATTGTCTTTCTGAATCAG+TGG | + | chr5_2:27963541-27963560 | None:intergenic | 30.0% | |
| ! | TGAATTTAGTCTTCTCGAAA+CGG | - | chr5_2:27963789-27963808 | Msa0766350:CDS | 30.0% |
| TCCAAACTATAACCATTGTA+GGG | + | chr5_2:27963823-27963842 | None:intergenic | 30.0% | |
| ! | TTATAGTTTGGAGCATATCA+GGG | - | chr5_2:27963831-27963850 | Msa0766350:CDS | 30.0% |
| AGCATCATCTTTCATTACAA+TGG | - | chr5_2:27963970-27963989 | Msa0766350:intron | 30.0% | |
| ATTCATCTTCCATAGTTTCA+AGG | - | chr5_2:27964112-27964131 | Msa0766350:intron | 30.0% | |
| CATCATCTTCCACAATTTAA+AGG | - | chr5_2:27964175-27964194 | Msa0766350:intron | 30.0% | |
| ! | CAATTTTACTTGTGATGCAA+GGG | - | chr5_2:27964252-27964271 | Msa0766350:intron | 30.0% |
| ! | ATCTGAAATTGCATTTGCAA+CGG | + | chr5_2:27964280-27964299 | None:intergenic | 30.0% |
| AAATGCAATTTCAGATATCC+CGG | - | chr5_2:27964284-27964303 | Msa0766350:intron | 30.0% | |
| AAGATTTCAAAAAACGGTCT+AGG | - | chr5_2:27964468-27964487 | Msa0766350:intron | 30.0% | |
| ATCAAGTTCATCAAGAGTAA+TGG | - | chr5_2:27964704-27964723 | Msa0766350:CDS | 30.0% | |
| TGTTTCATTTCATGAACTAG+TGG | + | chr5_2:27964884-27964903 | None:intergenic | 30.0% | |
| ACTAGTTCATGAAATGAAAC+AGG | - | chr5_2:27964883-27964902 | Msa0766350:CDS | 30.0% | |
| ACTAAGCATCAATGAATCAA+GGG | - | chr5_2:27965042-27965061 | Msa0766350:intron | 30.0% | |
| AGAACTATCTATCACTATCA+TGG | - | chr5_2:27965322-27965341 | Msa0766350:intron | 30.0% | |
| GATAAAGACTACAAAGTTCA+TGG | - | chr5_2:27965370-27965389 | Msa0766350:intron | 30.0% | |
| CTACAAAGTTCATGGTATAA+AGG | - | chr5_2:27965378-27965397 | Msa0766350:intron | 30.0% | |
| TCATGGTATAAAGGGATTAA+AGG | - | chr5_2:27965387-27965406 | Msa0766350:intron | 30.0% | |
| TATCAAGATTCTCCAACAAA+GGG | - | chr5_2:27965489-27965508 | Msa0766350:intron | 30.0% | |
| ! | CGAAGCATAATGAGCTTTAT+AGG | + | chr5_2:27962961-27962980 | None:intergenic | 35.0% |
| GTTTGTCTGTTATGTTAGTC+AGG | - | chr5_2:27963002-27963021 | Msa0766350:three_prime_UTR | 35.0% | |
| ! | TGAAGTGTCAATGCTACATA+AGG | + | chr5_2:27963045-27963064 | None:intergenic | 35.0% |
| !! | GTAGCATTGACACTTCAAAT+TGG | - | chr5_2:27963048-27963067 | Msa0766350:CDS | 35.0% |
| ! | TTTTGGACACTGACATGTAT+TGG | + | chr5_2:27963085-27963104 | None:intergenic | 35.0% |
| ! | TAAAAGTGTATGTGTCGTGT+TGG | + | chr5_2:27963108-27963127 | None:intergenic | 35.0% |
| !!! | TATCGATGTCAGTGTCATTT+TGG | - | chr5_2:27963170-27963189 | Msa0766350:CDS | 35.0% |
| TCAAACTCCTTCTATTGTCT+TGG | - | chr5_2:27963228-27963247 | Msa0766350:CDS | 35.0% | |
| ATTGTCTCTTACCTACATTG+TGG | + | chr5_2:27963333-27963352 | None:intergenic | 35.0% | |
| ACAATGTAGGTAAGAGACAA+TGG | - | chr5_2:27963332-27963351 | Msa0766350:CDS | 35.0% | |
| GATTACATTATAGTTGGAGG+AGG | - | chr5_2:27963397-27963416 | Msa0766350:CDS | 35.0% | |
| ! | TCTGTGCTACTAATAGAAAG+AGG | - | chr5_2:27963463-27963482 | Msa0766350:CDS | 35.0% |
| CAAAGATTCACTTCAGAAGA+TGG | - | chr5_2:27963577-27963596 | Msa0766350:CDS | 35.0% | |
| TAAAGAAGCTTATGAATGGG+TGG | - | chr5_2:27963714-27963733 | Msa0766350:CDS | 35.0% | |
| ! | GAATTTAGTCTTCTCGAAAC+GGG | - | chr5_2:27963790-27963809 | Msa0766350:CDS | 35.0% |
| CTCCAAACTATAACCATTGT+AGG | + | chr5_2:27963824-27963843 | None:intergenic | 35.0% | |
| ! | GTTATAGTTTGGAGCATATC+AGG | - | chr5_2:27963830-27963849 | Msa0766350:CDS | 35.0% |
| ! | TATAGTTTGGAGCATATCAG+GGG | - | chr5_2:27963832-27963851 | Msa0766350:CDS | 35.0% |
| TAGCTGCAATGTTTAAACTG+CGG | + | chr5_2:27964224-27964243 | None:intergenic | 35.0% | |
| ! | GCAATTTTACTTGTGATGCA+AGG | - | chr5_2:27964251-27964270 | Msa0766350:intron | 35.0% |
| ! | TCTGAAATTGCATTTGCAAC+GGG | + | chr5_2:27964279-27964298 | None:intergenic | 35.0% |
| TGCTATTGCAGCCATAATTA+TGG | - | chr5_2:27964318-27964337 | Msa0766350:intron | 35.0% | |
| CAAGGTGAATGCCATAATTA+TGG | + | chr5_2:27964332-27964351 | None:intergenic | 35.0% | |
| AAGATTGTTGAAGTTGTGCA+AGG | + | chr5_2:27964350-27964369 | None:intergenic | 35.0% | |
| GACAGGAACATCTAATTGTA+TGG | + | chr5_2:27964403-27964422 | None:intergenic | 35.0% | |
| TTGTATTGCAATTGCAATCG+TGG | - | chr5_2:27964535-27964554 | Msa0766350:intron | 35.0% | |
| AGTCATGATATCTCCTAATG+TGG | + | chr5_2:27964561-27964580 | None:intergenic | 35.0% | |
| TTCTTGAAATTTGACCACTC+AGG | - | chr5_2:27964653-27964672 | Msa0766350:CDS | 35.0% | |
| AGGTGACAAGAATGAAACAA+GGG | - | chr5_2:27964673-27964692 | Msa0766350:CDS | 35.0% | |
| !! | ATGGTTTGGTTTCTTGATGT+AGG | + | chr5_2:27964753-27964772 | None:intergenic | 35.0% |
| AACCAAACCATTCAACTTCA+AGG | - | chr5_2:27964762-27964781 | Msa0766350:CDS | 35.0% | |
| ACCAAACCATTCAACTTCAA+GGG | - | chr5_2:27964763-27964782 | Msa0766350:CDS | 35.0% | |
| ATATTATCAGCAGGTGCATT+AGG | - | chr5_2:27964794-27964813 | Msa0766350:CDS | 35.0% | |
| ! | TCTCAACTTTTGCTTCTAAG+TGG | - | chr5_2:27964821-27964840 | Msa0766350:CDS | 35.0% |
| GTTCATGAAATGAAACAGGT+TGG | - | chr5_2:27964887-27964906 | Msa0766350:CDS | 35.0% | |
| CAACTAAGATTGCTATGCAA+GGG | + | chr5_2:27964931-27964950 | None:intergenic | 35.0% | |
| TCAACTAAGATTGCTATGCA+AGG | + | chr5_2:27964932-27964951 | None:intergenic | 35.0% | |
| CTTGATTCATTGATGCTTAG+TGG | + | chr5_2:27965043-27965062 | None:intergenic | 35.0% | |
| CACTAAGCATCAATGAATCA+AGG | - | chr5_2:27965041-27965060 | Msa0766350:intron | 35.0% | |
| ATAGCAATGCCTCTTTCAAA+AGG | - | chr5_2:27965082-27965101 | Msa0766350:CDS | 35.0% | |
| TAGCAATGCCTCTTTCAAAA+GGG | - | chr5_2:27965083-27965102 | Msa0766350:CDS | 35.0% | |
| GATAGTTGAATTTCACAGCA+GGG | + | chr5_2:27965144-27965163 | None:intergenic | 35.0% | |
| AGATAGTTGAATTTCACAGC+AGG | + | chr5_2:27965145-27965164 | None:intergenic | 35.0% | |
| TGAGTCACAACAAAGCAAAT+TGG | - | chr5_2:27965255-27965274 | Msa0766350:intron | 35.0% | |
| ACTATCTATCACTATCATGG+TGG | - | chr5_2:27965325-27965344 | Msa0766350:intron | 35.0% | |
| !! | AAGGGATTAAAGGTATTGGA+TGG | - | chr5_2:27965397-27965416 | Msa0766350:intron | 35.0% |
| GTATCAAGATTCTCCAACAA+AGG | - | chr5_2:27965488-27965507 | Msa0766350:intron | 35.0% | |
| CAGATTCAATTTCCCTTTGT+TGG | + | chr5_2:27965504-27965523 | None:intergenic | 35.0% | |
| ! | AGCTTTATAGGCATACCTTG+AGG | + | chr5_2:27962949-27962968 | None:intergenic | 40.0% |
| GTTAGTCAGGGTTTGAATTC+TGG | - | chr5_2:27963015-27963034 | Msa0766350:exon | 40.0% | |
| AGTGTCAATGCTACATAAGG+AGG | + | chr5_2:27963042-27963061 | None:intergenic | 40.0% | |
| !!! | TGTATGTGTCGTGTTGGTTT+TGG | + | chr5_2:27963102-27963121 | None:intergenic | 40.0% |
| TCTGATAGAGTAGCTGCTAA+AGG | + | chr5_2:27963436-27963455 | None:intergenic | 40.0% | |
| ! | GTGCTACTAATAGAAAGAGG+TGG | - | chr5_2:27963466-27963485 | Msa0766350:CDS | 40.0% |
| AATGTGAGAGGAAGAGTTCT+TGG | - | chr5_2:27963607-27963626 | Msa0766350:CDS | 40.0% | |
| TGCCATGGTGTGAGAAAAAA+GGG | + | chr5_2:27963760-27963779 | None:intergenic | 40.0% | |
| TTGCCATGGTGTGAGAAAAA+AGG | + | chr5_2:27963761-27963780 | None:intergenic | 40.0% | |
| AATTCAGCAACAGATTGCCA+TGG | + | chr5_2:27963775-27963794 | None:intergenic | 40.0% | |
| GCCCTACAATGGTTATAGTT+TGG | - | chr5_2:27963819-27963838 | Msa0766350:CDS | 40.0% | |
| AAACACACTCCCAGAAATCT+TGG | + | chr5_2:27963860-27963879 | None:intergenic | 40.0% | |
| ! | ATTTCTGGGAGTGTGTTTGA+TGG | - | chr5_2:27963862-27963881 | Msa0766350:CDS | 40.0% |
| ACAAGAACTGTGAGGTTCTT+TGG | + | chr5_2:27963934-27963953 | None:intergenic | 40.0% | |
| TGGCATTTACAAGAACTGTG+AGG | + | chr5_2:27963942-27963961 | None:intergenic | 40.0% | |
| AAAGATGATGCTCTTCACTG+TGG | + | chr5_2:27963962-27963981 | None:intergenic | 40.0% | |
| TGAATGCCACAATATGGTTG+CGG | + | chr5_2:27964097-27964116 | None:intergenic | 40.0% | |
| GGAAGATGAATGCCACAATA+TGG | + | chr5_2:27964103-27964122 | None:intergenic | 40.0% | |
| CGACATGATCCTTGAAACTA+TGG | + | chr5_2:27964124-27964143 | None:intergenic | 40.0% | |
| TGACAGGACCCTTTAAATTG+TGG | + | chr5_2:27964187-27964206 | None:intergenic | 40.0% | |
| TTTCATTCTTGTCACCTGAG+TGG | + | chr5_2:27964670-27964689 | None:intergenic | 40.0% | |
| CAGGTGACAAGAATGAAACA+AGG | - | chr5_2:27964672-27964691 | Msa0766350:CDS | 40.0% | |
| AAGAATGAAACAAGGGCCAA+GGG | - | chr5_2:27964680-27964699 | Msa0766350:CDS | 40.0% | |
| CTTGATGAACTTGATACCCT+TGG | + | chr5_2:27964699-27964718 | None:intergenic | 40.0% | |
| CCAAACCATTCAACTTCAAG+GGG | - | chr5_2:27964764-27964783 | Msa0766350:CDS | 40.0% | |
| GGTGATGTCATATTATCAGC+AGG | - | chr5_2:27964785-27964804 | Msa0766350:CDS | 40.0% | |
| ! | CTTTTGCTTCTAAGTGGCAT+TGG | - | chr5_2:27964827-27964846 | Msa0766350:CDS | 40.0% |
| !! | GAAATGAAACAGGTTGGTCA+AGG | - | chr5_2:27964893-27964912 | Msa0766350:CDS | 40.0% |
| ! | GGATCAGGAAGTCTATTTTC+TGG | + | chr5_2:27964962-27964981 | None:intergenic | 40.0% |
| TCTGTTATGCCTGCAATTTG+TGG | + | chr5_2:27964986-27965005 | None:intergenic | 40.0% | |
| !! | TCAAGGTACCCTTTTGAAAG+AGG | + | chr5_2:27965094-27965113 | None:intergenic | 40.0% |
| GATCATTGTTGCTCAGTTCA+AGG | + | chr5_2:27965111-27965130 | None:intergenic | 40.0% | |
| AACTGAGCAACAATGATCCA+AGG | - | chr5_2:27965113-27965132 | Msa0766350:CDS | 40.0% | |
| TATCATGGTGGTTGCAATGT+TGG | - | chr5_2:27965337-27965356 | Msa0766350:intron | 40.0% | |
| ! | TCAACTTTTTGTGAGTCACC+AGG | - | chr5_2:27965421-27965440 | Msa0766350:intron | 40.0% |
| ! | AGCATCAAAAGTGTAGCCAT+AGG | + | chr5_2:27965454-27965473 | None:intergenic | 40.0% |
| ! | ATGGCTACACTTTTGATGCT+AGG | - | chr5_2:27965454-27965473 | Msa0766350:intron | 40.0% |
| ! | CTACACTTTTGATGCTAGGA+AGG | - | chr5_2:27965458-27965477 | Msa0766350:intron | 40.0% |
| GTTGGAGAATCTTGATACCT+TGG | + | chr5_2:27965486-27965505 | None:intergenic | 40.0% | |
| TCTTTCCCTTCAGAACCTCA+AGG | - | chr5_2:27962931-27962950 | Msa0766350:three_prime_UTR | 45.0% | |
| !! | GCATACCTTGAGGTTCTGAA+GGG | + | chr5_2:27962939-27962958 | None:intergenic | 45.0% |
| CGTTCAGCCAAGACAATAGA+AGG | + | chr5_2:27963238-27963257 | None:intergenic | 45.0% | |
| GAGACAATGGCACATGACTT+CGG | - | chr5_2:27963345-27963364 | Msa0766350:CDS | 45.0% | |
| GCACATGACTTCGGATGTTA+AGG | - | chr5_2:27963354-27963373 | Msa0766350:CDS | 45.0% | |
| TCGGATGTTAAGGAAGTAGC+AGG | - | chr5_2:27963364-27963383 | Msa0766350:CDS | 45.0% | |
| CGGATGTTAAGGAAGTAGCA+GGG | - | chr5_2:27963365-27963384 | Msa0766350:CDS | 45.0% | |
| ! | ATAGTTGGAGGAGGTACATG+TGG | - | chr5_2:27963406-27963425 | Msa0766350:CDS | 45.0% |
| GAAAGAGGTGGTTCACCATA+TGG | - | chr5_2:27963478-27963497 | Msa0766350:CDS | 45.0% | |
| ! | GATGGTGTTAGCAATGTGAG+AGG | - | chr5_2:27963595-27963614 | Msa0766350:CDS | 45.0% |
| GGTGGCTCATCAGCTATAAA+TGG | - | chr5_2:27963628-27963647 | Msa0766350:CDS | 45.0% | |
| GGCTCATCAGCTATAAATGG+TGG | - | chr5_2:27963631-27963650 | Msa0766350:CDS | 45.0% | |
| CATGGTGTGAGAAAAAAGGG+AGG | + | chr5_2:27963757-27963776 | None:intergenic | 45.0% | |
| !!! | CTCCCTTTTTTCTCACACCA+TGG | - | chr5_2:27963755-27963774 | Msa0766350:CDS | 45.0% |
| ! | ACGGGAATTTTGCCCTACAA+TGG | - | chr5_2:27963808-27963827 | Msa0766350:CDS | 45.0% |
| ATCAGGGGAACCAAGATTTC+TGG | - | chr5_2:27963847-27963866 | Msa0766350:CDS | 45.0% | |
| TCAGGGGAACCAAGATTTCT+GGG | - | chr5_2:27963848-27963867 | Msa0766350:CDS | 45.0% | |
| !! | GGGAGTGTGTTTGATGGATT+TGG | - | chr5_2:27963868-27963887 | Msa0766350:CDS | 45.0% |
| TACCTCAGCTGATCTTCTTG+AGG | - | chr5_2:27963900-27963919 | Msa0766350:intron | 45.0% | |
| TGGAAGATGATGCGACAATC+AGG | + | chr5_2:27964167-27964186 | None:intergenic | 45.0% | |
| AATAGCATTGCATTCACGCC+GGG | + | chr5_2:27964305-27964324 | None:intergenic | 45.0% | |
| CAATAGCATTGCATTCACGC+CGG | + | chr5_2:27964306-27964325 | None:intergenic | 45.0% | |
| ATTGCAATCGTGGCCACATT+AGG | - | chr5_2:27964545-27964564 | Msa0766350:intron | 45.0% | |
| CAAGAATGAAACAAGGGCCA+AGG | - | chr5_2:27964679-27964698 | Msa0766350:CDS | 45.0% | |
| CCCCTTGAAGTTGAATGGTT+TGG | + | chr5_2:27964767-27964786 | None:intergenic | 45.0% | |
| CATCACCCCTTGAAGTTGAA+TGG | + | chr5_2:27964772-27964791 | None:intergenic | 45.0% | |
| GTTATGCCTGCAATTTGTGG+TGG | + | chr5_2:27964983-27965002 | None:intergenic | 45.0% | |
| TGGTTGCAATGTTGGAACAG+TGG | - | chr5_2:27965345-27965364 | Msa0766350:intron | 45.0% | |
| GTCACCAGGTACTAATCCTA+TGG | - | chr5_2:27965435-27965454 | Msa0766350:intron | 45.0% | |
| ! | GTAGCCATAGGATTAGTACC+TGG | + | chr5_2:27965442-27965461 | None:intergenic | 45.0% |
| !! | TTGATGCTAGGAAGGTACCA+AGG | - | chr5_2:27965466-27965485 | Msa0766350:intron | 45.0% |
| ! | GGCATACCTTGAGGTTCTGA+AGG | + | chr5_2:27962940-27962959 | None:intergenic | 50.0% |
| GTGAGAGGAAGAGTTCTTGG+TGG | - | chr5_2:27963610-27963629 | Msa0766350:CDS | 50.0% | |
| AGCCTCAAGAAGATCAGCTG+AGG | + | chr5_2:27963905-27963924 | None:intergenic | 50.0% | |
| TCAGCTGATCTTCTTGAGGC+TGG | - | chr5_2:27963904-27963923 | Msa0766350:intron | 50.0% | |
| !! | CCTGCAATTTGTGGTGGATC+AGG | + | chr5_2:27964977-27964996 | None:intergenic | 50.0% |
| CCTGATCCACCACAAATTGC+AGG | - | chr5_2:27964974-27964993 | Msa0766350:CDS | 50.0% | |
| TTCACAGCAGGGTTAAGCCT+TGG | + | chr5_2:27965133-27965152 | None:intergenic | 50.0% | |
| GCTGCACCGCAACCATATTG+TGG | - | chr5_2:27964088-27964107 | Msa0766350:intron | 55.0% | |
| AGGGTCCTGTCACAATTGCG+AGG | - | chr5_2:27964195-27964214 | Msa0766350:intron | 55.0% | |
| GTCCTGTCACAATTGCGAGG+TGG | - | chr5_2:27964198-27964217 | Msa0766350:intron | 55.0% | |
| GGCTGCATTGCACATGTGAC+AGG | + | chr5_2:27964420-27964439 | None:intergenic | 55.0% | |
| GGCCACCTCGCAATTGTGAC+AGG | + | chr5_2:27964203-27964222 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 27962847 | 27965725 | 27962847 | ID=Msa0766350;Name=Msa0766350 |
| chr5_2 | mRNA | 27962847 | 27965725 | 27962847 | ID=Msa0766350-mRNA-1;Parent=Msa0766350;Name=Msa0766350-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.33|0.25|1|0.33|0.25|4|176|521 |
| chr5_2 | exon | 27962847 | 27963897 | 27962847 | ID=Msa0766350-mRNA-1:exon:10868;Parent=Msa0766350-mRNA-1 |
| chr5_2 | exon | 27964581 | 27965022 | 27964581 | ID=Msa0766350-mRNA-1:exon:10867;Parent=Msa0766350-mRNA-1 |
| chr5_2 | exon | 27965062 | 27965231 | 27965062 | ID=Msa0766350-mRNA-1:exon:10866;Parent=Msa0766350-mRNA-1 |
| chr5_2 | exon | 27965647 | 27965725 | 27965647 | ID=Msa0766350-mRNA-1:exon:10865;Parent=Msa0766350-mRNA-1 |
| chr5_2 | CDS | 27965647 | 27965725 | 27965647 | ID=Msa0766350-mRNA-1:cds;Parent=Msa0766350-mRNA-1 |
| chr5_2 | CDS | 27965062 | 27965231 | 27965062 | ID=Msa0766350-mRNA-1:cds;Parent=Msa0766350-mRNA-1 |
| chr5_2 | CDS | 27964581 | 27965022 | 27964581 | ID=Msa0766350-mRNA-1:cds;Parent=Msa0766350-mRNA-1 |
| chr5_2 | CDS | 27963023 | 27963897 | 27963023 | ID=Msa0766350-mRNA-1:cds;Parent=Msa0766350-mRNA-1 |
| chr5_2 | three_prime_UTR | 27962847 | 27963022 | 27962847 | ID=Msa0766350-mRNA-1:three_prime_utr;Parent=Msa0766350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
