AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1157570


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1157570 MtrunA17_Chr7g0251831 99.124 571 5 0 1 571 1 571 0.0 1169
Msa1157570 MtrunA17_Chr1g0196061 60.000 570 224 3 4 571 14 581 0.0 717
Msa1157570 MtrunA17_Chr8g0387211 55.846 573 238 5 6 571 9 573 0.0 643
Msa1157570 MtrunA17_Chr4g0048391 54.737 570 249 3 4 571 26 588 0.0 635
Msa1157570 MtrunA17_Chr5g0427061 50.433 577 270 6 4 571 47 616 0.0 573
Msa1157570 MtrunA17_Chr3g0133241 50.000 576 269 7 8 571 25 593 0.0 561
Msa1157570 MtrunA17_Chr5g0436511 33.162 582 361 12 6 571 13 582 9.24e-91 291
Msa1157570 MtrunA17_Chr3g0113151 31.525 590 369 13 2 568 13 590 1.29e-79 262
Msa1157570 MtrunA17_Chr8g0364131 29.965 564 309 16 28 571 9 506 4.75e-62 213
Msa1157570 MtrunA17_Chr5g0439771 79.048 105 17 1 32 131 17 121 2.58e-51 172
Msa1157570 MtrunA17_Chr2g0286991 24.916 594 309 24 4 480 11 584 1.19e-23 105
Msa1157570 MtrunA17_Chr2g0286991 29.388 245 130 7 258 498 164 369 2.28e-13 72.8
Msa1157570 MtrunA17_Chr1g0152951 25.352 426 217 15 1 409 61 402 1.56e-14 76.6
Msa1157570 MtrunA17_Chr4g0053361 25.926 432 243 20 1 398 40 428 6.81e-14 74.3
Msa1157570 MtrunA17_Chr7g0272131 22.674 516 319 20 3 492 48 509 5.23e-12 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1157570 AT1G12820.1 74.177 577 143 2 1 571 1 577 0.0 887
Msa1157570 AT3G26810.1 75.521 576 135 3 1 571 1 575 0.0 887
Msa1157570 AT3G62980.1 59.825 570 225 3 4 571 9 576 0.0 698
Msa1157570 AT4G03190.1 56.491 570 243 3 4 571 5 571 0.0 660
Msa1157570 AT5G49980.1 50.694 576 270 6 4 571 50 619 0.0 570
Msa1157570 AT4G24390.2 49.912 569 281 3 6 571 56 623 0.0 560
Msa1157570 AT4G24390.1 49.912 569 281 3 6 571 56 623 0.0 560
Msa1157570 AT2G39940.1 30.875 583 374 12 6 571 18 588 3.75e-91 292
Msa1157570 AT4G15475.1 24.713 522 336 16 2 498 9 498 1.09e-24 108
Msa1157570 AT4G15475.1 25.263 380 251 13 112 482 231 586 3.37e-14 75.9
Msa1157570 AT1G47056.1 25.616 406 263 16 4 398 43 420 1.35e-12 70.9
Msa1157570 AT2G25490.1 23.583 547 314 23 1 492 64 561 1.14e-11 68.2

Find 169 sgRNAs with CRISPR-Local

Find 239 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTAATTTCGCTTGCCTTAA+AGG 0.046724 7_4:-46566573 Msa1157570:CDS
TCAAATTAATATCGCCTTTA+AGG 0.050086 7_4:+46566559 None:intergenic
TCCACAAAGGTTGTGAAATT+TGG 0.088802 7_4:-46567883 Msa1157570:five_prime_UTR
CGAGAAAATTTGCGTTAATT+TGG 0.091715 7_4:-46568145 Msa1157570:five_prime_UTR
AACCTGAATCGGATAAAATT+TGG 0.135051 7_4:+46565707 None:intergenic
ACAAGTGATGTGCAGCTTTC+TGG 0.161598 7_4:+46566600 None:intergenic
GTAAAGAATTGCAAGAATTA+AGG 0.183750 7_4:-46565880 Msa1157570:CDS
TGTTGAAATGTAGGTCTCTT+AGG 0.191405 7_4:-46566683 Msa1157570:intron
AGATGCCTATGCTAAGTTTA+AGG 0.202777 7_4:-46566385 Msa1157570:CDS
CTCTGTGTTTGTTTAGATCT+TGG 0.222546 7_4:-46567960 Msa1157570:five_prime_UTR
CTTCAACTTCATTCTCTTGC+AGG 0.226329 7_4:+46566652 None:intergenic
CAACTAATGGATTTGGGAAT+TGG 0.245004 7_4:-46566432 Msa1157570:CDS
CAGCCGCTAGATGAAGGTTT+TGG 0.248633 7_4:-46565644 Msa1157570:CDS
CAAGCAGCTGTTACCGAAAA+AGG 0.259536 7_4:-46565830 Msa1157570:CDS
GAGCTATGCAGCAGGCATTC+TGG 0.272900 7_4:-46566250 Msa1157570:CDS
CTGCTGTTGCTGCTAATTGC+AGG 0.279510 7_4:-46567400 Msa1157570:intron
TCTGAACTCATCTCATCTTC+TGG 0.292537 7_4:-46568319 Msa1157570:five_prime_UTR
AAGCTGTTTGTACTTTGTTT+AGG 0.298277 7_4:-46565120 Msa1157570:three_prime_UTR
AGCACCTCAACTAATGGATT+TGG 0.298955 7_4:-46566439 Msa1157570:CDS
ACATGTTCTATTACCTCGTC+TGG 0.301048 7_4:+46567818 None:intergenic
GAGAAAATTTGCGTTAATTT+GGG 0.304442 7_4:-46568144 Msa1157570:five_prime_UTR
GCGGGAAACTACAGCGCTTA+TGG 0.304697 7_4:-46566197 Msa1157570:CDS
TGCTAAGAATAAGGTTGGTT+TGG 0.312116 7_4:-46567546 Msa1157570:CDS
TAGTTTGGTTCCTCATGGTT+GGG 0.318544 7_4:-46567600 Msa1157570:CDS
TGACAGAAACTCTTTGTCTT+TGG 0.323445 7_4:-46567771 Msa1157570:CDS
TAAAGAATTGCAAGAATTAA+GGG 0.324072 7_4:-46565879 Msa1157570:CDS
TAAATAGCTGCAAGGCTAAA+AGG 0.326621 7_4:+46566306 None:intergenic
CTCCTAACCTTAAGAGTCTA+AGG 0.327273 7_4:-46566509 Msa1157570:CDS
AGCTATGCAGCAGGCATTCT+GGG 0.329527 7_4:-46566249 Msa1157570:CDS
TGAAGCACTTGCTAAGAATA+AGG 0.333907 7_4:-46567555 Msa1157570:CDS
TCCAAATTTCACAACCTTTG+TGG 0.343927 7_4:+46567882 None:intergenic
GATGTTAAGTTCTGGCAAAT+TGG 0.351644 7_4:+46566282 None:intergenic
AAAAGTGAAAATAATTTAAA+GGG 0.353344 7_4:+46568058 None:intergenic
TGTTTAACCTTAGACTCTTA+AGG 0.353638 7_4:+46566502 None:intergenic
CTGAAGGATGCAATTGAACT+TGG 0.361032 7_4:+46568231 None:intergenic
TTATTTAACTAACCATGGTT+AGG 0.368125 7_4:+46568417 None:intergenic
AAAGTTAAAGATTTCAGATC+AGG 0.376006 7_4:+46567650 None:intergenic
TCTGAAATCTTTAACTTTGA+AGG 0.377635 7_4:-46567645 Msa1157570:CDS
TTAGTTCTTGTTAGCTGTGA+AGG 0.381060 7_4:-46567443 Msa1157570:CDS
ACCTGAATCGGATAAAATTT+GGG 0.388473 7_4:+46565708 None:intergenic
TGAGAGCAGCATTGGTCATC+TGG 0.390786 7_4:+46565750 None:intergenic
AATGCGAGCACCTCAACTAA+TGG 0.395557 7_4:-46566445 Msa1157570:CDS
AAGTCAATAACCAGTCTGTC+AGG 0.405734 7_4:-46566345 Msa1157570:CDS
TTAGTTTGGTTCCTCATGGT+TGG 0.407238 7_4:-46567601 Msa1157570:CDS
TCTAGCGGCTGCATTGTGTC+AGG 0.407670 7_4:+46565656 None:intergenic
GTTGAAATGTAGGTCTCTTA+GGG 0.408186 7_4:-46566682 Msa1157570:intron
GGCTGCATTGTGTCAGGGTC+AGG 0.410171 7_4:+46565662 None:intergenic
ATGTTGTCTATTGCATTTGC+TGG 0.411937 7_4:-46565518 Msa1157570:CDS
AGGTTGGTTTGGAGGAACTT+AGG 0.414550 7_4:-46567535 Msa1157570:CDS
CGGGAAACTACAGCGCTTAT+GGG 0.416014 7_4:-46566196 Msa1157570:intron
AAATAATTTAAAGGGGCAAA+AGG 0.417691 7_4:+46568066 None:intergenic
ATCGTACAGTGGCTGGGAAA+AGG 0.418126 7_4:-46565217 Msa1157570:CDS
TAGAGTAATGAGTGGAGCTT+AGG 0.418193 7_4:+46565782 None:intergenic
GCACCTCAACTAATGGATTT+GGG 0.425041 7_4:-46566438 Msa1157570:CDS
CTGAAATCTTTAACTTTGAA+GGG 0.431379 7_4:-46567644 Msa1157570:CDS
GTGGAGATGGATTATAATGA+TGG 0.435286 7_4:+46568489 None:intergenic
AATGGATCGCATTGGAGACT+TGG 0.437652 7_4:-46565927 Msa1157570:CDS
TATTTGTATCGTACAGTGGC+TGG 0.438724 7_4:-46565224 Msa1157570:CDS
AACCTTAGACTCTTAAGGTT+AGG 0.438734 7_4:+46566507 None:intergenic
TAGTCCCTCCGGATATTTAG+TGG 0.444238 7_4:-46565077 Msa1157570:three_prime_UTR
CTCTATTAGTCCTGAGAGGT+TGG 0.445130 7_4:-46567684 Msa1157570:CDS
TAAGAATAAGGTTGGTTTGG+AGG 0.445339 7_4:-46567543 Msa1157570:CDS
TATTTAACTAACCATGGTTA+GGG 0.447407 7_4:+46568418 None:intergenic
ATGAAACAATGCGATCCCTT+TGG 0.454128 7_4:-46565382 Msa1157570:CDS
TGTCTTTGGTATGCAAAAGT+TGG 0.456705 7_4:-46567757 Msa1157570:CDS
TGCTGCATAGCTCAAGTTCA+AGG 0.458884 7_4:+46566260 None:intergenic
TAGTTCTTGTTAGCTGTGAA+GGG 0.462515 7_4:-46567442 Msa1157570:CDS
AGTTCAAGGATGTTAAGTTC+TGG 0.465857 7_4:+46566274 None:intergenic
AGTTTGGTTCCTCATGGTTG+GGG 0.466110 7_4:-46567599 Msa1157570:CDS
CAAGGATACATAACCTGAAT+CGG 0.468868 7_4:+46565696 None:intergenic
AAGATGCACCCGACTATGTA+TGG 0.469551 7_4:-46565193 Msa1157570:CDS
TACTGTTATGAGAGCAGCAT+TGG 0.472434 7_4:+46565742 None:intergenic
TTAGCAAGTGCTTCAATCCA+TGG 0.473895 7_4:+46567563 None:intergenic
GCAGATTGTTATGTGGAAGA+TGG 0.476183 7_4:-46565266 Msa1157570:CDS
TCGTACAGTGGCTGGGAAAA+GGG 0.479007 7_4:-46565216 Msa1157570:CDS
GATCTTCAGTGAAAGTGAAC+AGG 0.481093 7_4:-46565288 Msa1157570:CDS
GGACTTGTAGCGATATCAAT+GGG 0.483963 7_4:-46565809 Msa1157570:CDS
AGTACAAACCACTAAATATC+CGG 0.489400 7_4:+46565069 None:intergenic
AACCTCTCCACCAACCTCTC+AGG 0.489862 7_4:+46567674 None:intergenic
TGTGGAAGATGGGCAGAGAG+TGG 0.494500 7_4:-46565255 Msa1157570:CDS
AGCTCTTGCATCATCAATCA+TGG 0.495698 7_4:+46564959 None:intergenic
ACAGCTGCTTGGTTTCCAAA+TGG 0.496922 7_4:+46565842 None:intergenic
GCACTTGCTAAGAATAAGGT+TGG 0.496983 7_4:-46567551 Msa1157570:CDS
AGAGAGAGATGCGAAAATGG+TGG 0.499189 7_4:+46568385 None:intergenic
CGCATTGGAGACTTGGGACT+AGG 0.501929 7_4:-46565920 Msa1157570:CDS
TATTGACTTGCACTTAAGAA+TGG 0.502436 7_4:+46566359 None:intergenic
GACCAGGTCTTCCTTTACAT+TGG 0.502533 7_4:-46565563 Msa1157570:CDS
AATAATTTAAAGGGGCAAAA+GGG 0.505593 7_4:+46568067 None:intergenic
CTGAGGCGGCTATCACTCTC+AGG 0.508102 7_4:-46565596 Msa1157570:CDS
GAGATTAGAGACTGTCCATT+CGG 0.509013 7_4:-46565437 Msa1157570:CDS
GATGAATCGAACGGTGGAGA+TGG 0.509395 7_4:+46568476 None:intergenic
TGGAGGAACTTAGGTTGAAG+AGG 0.518144 7_4:-46567526 Msa1157570:CDS
GGAACTTAGGTTGAAGAGGA+TGG 0.518519 7_4:-46567522 Msa1157570:CDS
TTGGTTCCTCATGGTTGGGG+TGG 0.518779 7_4:-46567596 Msa1157570:CDS
AAGAATTATTTAACTAACCA+TGG 0.519708 7_4:+46568412 None:intergenic
TTTCCACTTCAATTTCAAAA+GGG 0.521397 7_4:-46567986 Msa1157570:five_prime_UTR
TACAGAGTCCATACATAGTC+GGG 0.521912 7_4:+46565185 None:intergenic
CAGATTGTTATGTGGAAGAT+GGG 0.522068 7_4:-46565265 Msa1157570:CDS
ATGGTTAGGGTTATAGAACT+AGG 0.522281 7_4:+46568431 None:intergenic
ATCCTTTGCAATGCATCGAC+AGG 0.522604 7_4:+46566471 None:intergenic
AGGACTTGTAGCGATATCAA+TGG 0.526593 7_4:-46565810 Msa1157570:CDS
CTCAGGTCAGTTGACGGACC+AGG 0.527551 7_4:-46565579 Msa1157570:CDS
AGGCATCTGAATTGAGATCA+TGG 0.529060 7_4:+46566400 None:intergenic
ACGGCGCTTCTAACAGACAT+AGG 0.529179 7_4:-46565410 Msa1157570:CDS
GTCCTGAGAGGTTGGTGGAG+AGG 0.530368 7_4:-46567676 Msa1157570:CDS
CAGCGTACATTCCAATGTAA+AGG 0.531532 7_4:+46565552 None:intergenic
TGGTTTCCAAATGGAGCTGA+TGG 0.536293 7_4:+46565851 None:intergenic
ACAATGCAGCCGCTAGATGA+AGG 0.545718 7_4:-46565650 Msa1157570:CDS
TAAAACTTATTCGCCACTGC+GGG 0.546545 7_4:-46566215 Msa1157570:CDS
ATCACTCTCAGGTCAGTTGA+CGG 0.547777 7_4:-46565585 Msa1157570:CDS
TATTAGTCCTGAGAGGTTGG+TGG 0.552035 7_4:-46567681 Msa1157570:CDS
CCTCGCACGACGACATCCAA+AGG 0.564820 7_4:+46565366 None:intergenic
TGTGAAGGGTTCACTACTGA+TGG 0.566943 7_4:-46567428 Msa1157570:CDS
TGCAGTCTTGCAAGCGACTG+AGG 0.572597 7_4:-46565613 Msa1157570:CDS
CTCGCACGACGACATCCAAA+GGG 0.573327 7_4:+46565367 None:intergenic
TTGAACTTGAGCTATGCAGC+AGG 0.574209 7_4:-46566258 Msa1157570:CDS
AGCATATTAATGAAGTGAAG+TGG 0.574213 7_4:+46564998 None:intergenic
ATGGATCGCATTGGAGACTT+GGG 0.574539 7_4:-46565926 Msa1157570:CDS
CATGTTCTATTACCTCGTCT+GGG 0.576513 7_4:+46567819 None:intergenic
GGTTTCCAAATGGAGCTGAT+GGG 0.578326 7_4:+46565852 None:intergenic
AAACTAAAATCAGCAAAATG+AGG 0.583106 7_4:+46567617 None:intergenic
TGACTTGCACTTAAGAATGG+TGG 0.584011 7_4:+46566362 None:intergenic
CGACTATGTATGGACTCTGT+AGG 0.584215 7_4:-46565183 Msa1157570:exon
TGGAGATGGATTATAATGAT+GGG 0.589052 7_4:+46568490 None:intergenic
CTACAGAGTCCATACATAGT+CGG 0.589157 7_4:+46565184 None:intergenic
CGGCGCTTCTAACAGACATA+GGG 0.589191 7_4:-46565409 Msa1157570:CDS
ATTTGTATCGTACAGTGGCT+GGG 0.590955 7_4:-46565223 Msa1157570:CDS
CTAGCGGCTGCATTGTGTCA+GGG 0.593673 7_4:+46565657 None:intergenic
ATTTGCTGGCGAGAGTGACA+AGG 0.594995 7_4:-46565504 Msa1157570:CDS
AAAGTGAAAATAATTTAAAG+GGG 0.601378 7_4:+46568059 None:intergenic
CCTTTGGATGTCGTCGTGCG+AGG 0.601956 7_4:-46565366 Msa1157570:CDS
TGATGAAATTGGATTTCTGA+AGG 0.603054 7_4:+46568215 None:intergenic
GAAGATGCCGAGGTTGAATG+TGG 0.604525 7_4:-46565312 Msa1157570:CDS
TTGCAGATAATGGATCGCAT+TGG 0.604842 7_4:-46565935 Msa1157570:intron
TTCCAATGTAAAGGAAGACC+TGG 0.605826 7_4:+46565561 None:intergenic
ATTCCCAAATCCATTAGTTG+AGG 0.605945 7_4:+46566435 None:intergenic
GAGAGCACTTGAGAGACTTG+TGG 0.606863 7_4:-46566538 Msa1157570:CDS
AGAGAATCTTGACCGTTGAG+TGG 0.611845 7_4:+46568519 None:intergenic
CATGAATTATTTCCCAGACG+AGG 0.613092 7_4:-46567831 Msa1157570:CDS
GCCCCAAAACCTTCATCTAG+CGG 0.617786 7_4:+46565641 None:intergenic
TGAACAGGCAGATTGTTATG+TGG 0.618273 7_4:-46565273 Msa1157570:CDS
GGAATGCTCTATGTATTGAA+CGG 0.622115 7_4:-46565482 Msa1157570:CDS
GGTGGCCTTAAACTTAGCAT+AGG 0.624275 7_4:+46566380 None:intergenic
GACAGAAGTAGAGTAATGAG+TGG 0.628618 7_4:+46565774 None:intergenic
AGAAGCGCCGTGTCTCCGAA+TGG 0.629129 7_4:+46565422 None:intergenic
AGTCAATAACCAGTCTGTCA+GGG 0.630329 7_4:-46566344 Msa1157570:CDS
AGACTGTCCATTCGGAGACA+CGG 0.631141 7_4:-46565429 Msa1157570:CDS
AAGATCTCCACATTCAACCT+CGG 0.639108 7_4:+46565305 None:intergenic
AGCGCTGTAGTTTCCCGCAG+TGG 0.643718 7_4:+46566202 None:intergenic
TGATAGAGAGATGAATCGAA+CGG 0.656125 7_4:+46568467 None:intergenic
GATGTATTTGTATCGTACAG+TGG 0.656726 7_4:-46565228 Msa1157570:CDS
AAGAACGAGAAAGTAGCTCA+AGG 0.658755 7_4:+46567483 None:intergenic
ACAAACCACTAAATATCCGG+AGG 0.660891 7_4:+46565072 None:intergenic
ATGCATGTTCATCCACTCAA+CGG 0.661500 7_4:-46568531 Msa1157570:five_prime_UTR
TTTGCTGGCGAGAGTGACAA+GGG 0.663212 7_4:-46565503 Msa1157570:CDS
GTTACTCTATTAGTCCTGAG+AGG 0.667341 7_4:-46567688 Msa1157570:CDS
TAGTTCTATAACCCTAACCA+TGG 0.669404 7_4:-46568429 Msa1157570:five_prime_UTR
AAATTGGATAAATAGCTGCA+AGG 0.670308 7_4:+46566298 None:intergenic
AATGAAGTTGAAGATCACAA+AGG 0.677519 7_4:-46566642 Msa1157570:CDS
TTGAAGATCACAAAGGACAG+TGG 0.687258 7_4:-46566635 Msa1157570:CDS
AGTCTTGCAAGCGACTGAGG+CGG 0.691472 7_4:-46565610 Msa1157570:CDS
CATTAGCTAAGAAGATGCCG+AGG 0.696827 7_4:-46565322 Msa1157570:CDS
CAAACCACTAAATATCCGGA+GGG 0.700472 7_4:+46565073 None:intergenic
TGCCTGTCGATGCATTGCAA+AGG 0.702269 7_4:-46566473 Msa1157570:CDS
ACAAAACCACCCCAACCATG+AGG 0.706550 7_4:+46567590 None:intergenic
AAACAAAGATAGAAAACACG+TGG 0.707301 7_4:+46567931 None:intergenic
ATAAAACTTATTCGCCACTG+CGG 0.722725 7_4:-46566216 Msa1157570:CDS
TAGAGAGATGAATCGAACGG+TGG 0.723986 7_4:+46568470 None:intergenic
AATTAGCAGCAACAGCAGCA+AGG 0.730841 7_4:+46567405 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAGTGAAAATAATTTAAA+GGG + chr7_4:46565464-46565483 None:intergenic 10.0%
!! AAAAAGTGAAAATAATTTAA+AGG + chr7_4:46565465-46565484 None:intergenic 10.0%
!! AAAGTGAAAATAATTTAAAG+GGG + chr7_4:46565463-46565482 None:intergenic 15.0%
!!! TATGTTTAAGAATTTGTTTT+TGG - chr7_4:46566201-46566220 Msa1157570:CDS 15.0%
!!! ATTTGATGGTTTTTATTTTT+AGG - chr7_4:46566277-46566296 Msa1157570:CDS 15.0%
!!! ATCAAATTTCTATTTTTTGA+TGG - chr7_4:46566367-46566386 Msa1157570:CDS 15.0%
!!! ACTTTTTATTTCATTCTAAA+TGG + chr7_4:46566525-46566544 None:intergenic 15.0%
!! AGTTGCAAATTTATATTAAT+TGG + chr7_4:46567443-46567462 None:intergenic 15.0%
!! AAGAATTATTTAACTAACCA+TGG + chr7_4:46565110-46565129 None:intergenic 20.0%
!!! AAAAATTGTGATGATGAAAT+TGG + chr7_4:46565318-46565337 None:intergenic 20.0%
!!! ATTTTTTGATGGATTTTTGT+TGG - chr7_4:46566378-46566397 Msa1157570:CDS 20.0%
!!! AAAAAAAAAGCACATCTATT+TGG + chr7_4:46566561-46566580 None:intergenic 20.0%
!! ATAATTAATGTTGCAGATAA+TGG - chr7_4:46567574-46567593 Msa1157570:CDS 20.0%
!! TAAAGAATTGCAAGAATTAA+GGG - chr7_4:46567640-46567659 Msa1157570:CDS 20.0%
! TATTTAACTAACCATGGTTA+GGG + chr7_4:46565104-46565123 None:intergenic 25.0%
! TTATTTAACTAACCATGGTT+AGG + chr7_4:46565105-46565124 None:intergenic 25.0%
!! CAAATTTTCTCGAGAAAATA+CGG + chr7_4:46565366-46565385 None:intergenic 25.0%
! GAGAAAATTTGCGTTAATTT+GGG - chr7_4:46565375-46565394 Msa1157570:CDS 25.0%
!!! AAAAATTACATTTTTCAGCG+TGG + chr7_4:46565416-46565435 None:intergenic 25.0%
! AATAATTTAAAGGGGCAAAA+GGG + chr7_4:46565455-46565474 None:intergenic 25.0%
! AAATAATTTAAAGGGGCAAA+AGG + chr7_4:46565456-46565475 None:intergenic 25.0%
! TGAAATTGAAGTGGAAAAAA+CGG + chr7_4:46565530-46565549 None:intergenic 25.0%
!! TTTTCCACTTCAATTTCAAA+AGG - chr7_4:46565532-46565551 Msa1157570:CDS 25.0%
! TTTCCACTTCAATTTCAAAA+GGG - chr7_4:46565533-46565552 Msa1157570:CDS 25.0%
!! AGAATGAAAATTTTCCACAA+AGG - chr7_4:46565623-46565642 Msa1157570:CDS 25.0%
! AAAGTTAAAGATTTCAGATC+AGG + chr7_4:46565872-46565891 None:intergenic 25.0%
!! TCTGAAATCTTTAACTTTGA+AGG - chr7_4:46565874-46565893 Msa1157570:CDS 25.0%
!! CTGAAATCTTTAACTTTGAA+GGG - chr7_4:46565875-46565894 Msa1157570:CDS 25.0%
! AAACTAAAATCAGCAAAATG+AGG + chr7_4:46565905-46565924 None:intergenic 25.0%
!!! TCATTTTGCTGATTTTAGTT+TGG - chr7_4:46565904-46565923 Msa1157570:CDS 25.0%
!!! TTGACTTTGTTTTTACCATA+TGG - chr7_4:46566229-46566248 Msa1157570:CDS 25.0%
! AACCATCAAATCAAATTGTA+CGG + chr7_4:46566268-46566287 None:intergenic 25.0%
!!! TTATTTTTAGGATAGCTGTA+CGG - chr7_4:46566289-46566308 Msa1157570:CDS 25.0%
! GTTTGTATGTGAAAAATATC+TGG - chr7_4:46566708-46566727 Msa1157570:intron 25.0%
! TCAAATTAATATCGCCTTTA+AGG + chr7_4:46566963-46566982 None:intergenic 25.0%
! GTAAAGAATTGCAAGAATTA+AGG - chr7_4:46567639-46567658 Msa1157570:CDS 25.0%
!! TGGAGATGGATTATAATGAT+GGG + chr7_4:46565032-46565051 None:intergenic 30.0%
TGATGAAATTGGATTTCTGA+AGG + chr7_4:46565307-46565326 None:intergenic 30.0%
CGAGAAAATTTGCGTTAATT+TGG - chr7_4:46565374-46565393 Msa1157570:CDS 30.0%
!!! ATACCCTTTTGAAATTGAAG+TGG + chr7_4:46565539-46565558 None:intergenic 30.0%
AAACAAAGATAGAAAACACG+TGG + chr7_4:46565591-46565610 None:intergenic 30.0%
!! AGAACATGTTTTTGACTATG+TGG - chr7_4:46565715-46565734 Msa1157570:CDS 30.0%
! ACAAGACAAAGAGTTTTCAT+AGG - chr7_4:46565803-46565822 Msa1157570:CDS 30.0%
!! TGTTTTTACCATATGGTGTT+TGG - chr7_4:46566236-46566255 Msa1157570:CDS 30.0%
!! ATCCGTACAATTTGATTTGA+TGG - chr7_4:46566263-46566282 Msa1157570:CDS 30.0%
! GTGTACTTTTATTCTCTAAC+TGG + chr7_4:46566423-46566442 None:intergenic 30.0%
!! TTATGACTTGCAGTTTTAGT+TGG - chr7_4:46566660-46566679 Msa1157570:CDS 30.0%
ATACAAACAAGATAATCCCT+AGG + chr7_4:46566696-46566715 None:intergenic 30.0%
TATGTGAAAAATATCTGGTC+AGG - chr7_4:46566713-46566732 Msa1157570:intron 30.0%
ATGTGAAAAATATCTGGTCA+GGG - chr7_4:46566714-46566733 Msa1157570:intron 30.0%
! TTGTGCTTTTGTTGAAATGT+AGG - chr7_4:46566827-46566846 Msa1157570:intron 30.0%
AATGAAGTTGAAGATCACAA+AGG - chr7_4:46566877-46566896 Msa1157570:intron 30.0%
TGTTTAACCTTAGACTCTTA+AGG + chr7_4:46567020-46567039 None:intergenic 30.0%
!! TATTGACTTGCACTTAAGAA+TGG + chr7_4:46567163-46567182 None:intergenic 30.0%
AAATTGGATAAATAGCTGCA+AGG + chr7_4:46567224-46567243 None:intergenic 30.0%
AAACGACAACTAAAACTGAA+TGG + chr7_4:46567395-46567414 None:intergenic 30.0%
!! AGTTGTCGTTTACTTGTTTT+AGG - chr7_4:46567404-46567423 Msa1157570:CDS 30.0%
TAATACCCTTGAGTATTTAC+TGG + chr7_4:46567545-46567564 None:intergenic 30.0%
! GATAAAATTTGGGCAGTTTT+TGG + chr7_4:46567804-46567823 None:intergenic 30.0%
ACCTGAATCGGATAAAATTT+GGG + chr7_4:46567814-46567833 None:intergenic 30.0%
AACCTGAATCGGATAAAATT+TGG + chr7_4:46567815-46567834 None:intergenic 30.0%
! AAGCTGTTTGTACTTTGTTT+AGG - chr7_4:46568399-46568418 Msa1157570:five_prime_UTR 30.0%
AGTACAAACCACTAAATATC+CGG + chr7_4:46568453-46568472 None:intergenic 30.0%
AGCATATTAATGAAGTGAAG+TGG + chr7_4:46568524-46568543 None:intergenic 30.0%
!! GTGGAGATGGATTATAATGA+TGG + chr7_4:46565033-46565052 None:intergenic 35.0%
TGATAGAGAGATGAATCGAA+CGG + chr7_4:46565055-46565074 None:intergenic 35.0%
ATGGTTAGGGTTATAGAACT+AGG + chr7_4:46565091-46565110 None:intergenic 35.0%
! TAGTTCTATAACCCTAACCA+TGG - chr7_4:46565090-46565109 Msa1157570:three_prime_UTR 35.0%
CTCTGTGTTTGTTTAGATCT+TGG - chr7_4:46565559-46565578 Msa1157570:CDS 35.0%
TCCACAAAGGTTGTGAAATT+TGG - chr7_4:46565636-46565655 Msa1157570:CDS 35.0%
TCCAAATTTCACAACCTTTG+TGG + chr7_4:46565640-46565659 None:intergenic 35.0%
TGACAGAAACTCTTTGTCTT+TGG - chr7_4:46565748-46565767 Msa1157570:CDS 35.0%
TGTCTTTGGTATGCAAAAGT+TGG - chr7_4:46565762-46565781 Msa1157570:CDS 35.0%
!!! GATTTTAGTTTGGTTCCTCA+TGG - chr7_4:46565914-46565933 Msa1157570:CDS 35.0%
! TGAAGCACTTGCTAAGAATA+AGG - chr7_4:46565964-46565983 Msa1157570:intron 35.0%
! TGCTAAGAATAAGGTTGGTT+TGG - chr7_4:46565973-46565992 Msa1157570:intron 35.0%
!! TAAGAATAAGGTTGGTTTGG+AGG - chr7_4:46565976-46565995 Msa1157570:intron 35.0%
! TTAGTTCTTGTTAGCTGTGA+AGG - chr7_4:46566076-46566095 Msa1157570:intron 35.0%
TAGTTCTTGTTAGCTGTGAA+GGG - chr7_4:46566077-46566096 Msa1157570:intron 35.0%
GGATAAATCCAAACACCATA+TGG + chr7_4:46566247-46566266 None:intergenic 35.0%
GTACACTTAGTTCAGCAAAA+TGG - chr7_4:46566437-46566456 Msa1157570:CDS 35.0%
ACTTAGTTCAGCAAAATGGT+TGG - chr7_4:46566441-46566460 Msa1157570:CDS 35.0%
!!! TACCCTATGTCTAGTTTTGT+AGG - chr7_4:46566484-46566503 Msa1157570:CDS 35.0%
TGCCTACAAAACTAGACATA+GGG + chr7_4:46566489-46566508 None:intergenic 35.0%
ATGCCTACAAAACTAGACAT+AGG + chr7_4:46566490-46566509 None:intergenic 35.0%
TTGCTTGTGTTACATTTCAG+AGG - chr7_4:46566580-46566599 Msa1157570:CDS 35.0%
TGCTTGTGTTACATTTCAGA+GGG - chr7_4:46566581-46566600 Msa1157570:CDS 35.0%
TAGTTGGAAAATGTGTTCCT+AGG - chr7_4:46566676-46566695 Msa1157570:intron 35.0%
AGTTGGAAAATGTGTTCCTA+GGG - chr7_4:46566677-46566696 Msa1157570:intron 35.0%
TGTTGAAATGTAGGTCTCTT+AGG - chr7_4:46566836-46566855 Msa1157570:intron 35.0%
GTTGAAATGTAGGTCTCTTA+GGG - chr7_4:46566837-46566856 Msa1157570:intron 35.0%
CTTAATTTCGCTTGCCTTAA+AGG - chr7_4:46566946-46566965 Msa1157570:intron 35.0%
AACCTTAGACTCTTAAGGTT+AGG + chr7_4:46567015-46567034 None:intergenic 35.0%
ATTCCCAAATCCATTAGTTG+AGG + chr7_4:46567087-46567106 None:intergenic 35.0%
!! CAACTAATGGATTTGGGAAT+TGG - chr7_4:46567087-46567106 Msa1157570:intron 35.0%
AGATGCCTATGCTAAGTTTA+AGG - chr7_4:46567134-46567153 Msa1157570:intron 35.0%
TAAATAGCTGCAAGGCTAAA+AGG + chr7_4:46567216-46567235 None:intergenic 35.0%
! GATGTTAAGTTCTGGCAAAT+TGG + chr7_4:46567240-46567259 None:intergenic 35.0%
AGTTCAAGGATGTTAAGTTC+TGG + chr7_4:46567248-46567267 None:intergenic 35.0%
ATAAAACTTATTCGCCACTG+CGG - chr7_4:46567303-46567322 Msa1157570:intron 35.0%
TGGATGCTGTAACAAGTAAA+AGG + chr7_4:46567375-46567394 None:intergenic 35.0%
TCTCTCCAGTAAATACTCAA+GGG - chr7_4:46567537-46567556 Msa1157570:CDS 35.0%
! TATCGCTACAAGTCCTTTTT+CGG + chr7_4:46567705-46567724 None:intergenic 35.0%
CAAGGATACATAACCTGAAT+CGG + chr7_4:46567826-46567845 None:intergenic 35.0%
ATGTTGTCTATTGCATTTGC+TGG - chr7_4:46568001-46568020 Msa1157570:five_prime_UTR 35.0%
GGAATGCTCTATGTATTGAA+CGG - chr7_4:46568037-46568056 Msa1157570:five_prime_UTR 35.0%
CAGATTGTTATGTGGAAGAT+GGG - chr7_4:46568254-46568273 Msa1157570:five_prime_UTR 35.0%
GATGTATTTGTATCGTACAG+TGG - chr7_4:46568291-46568310 Msa1157570:five_prime_UTR 35.0%
!! TAATGCAATTTTAGTCCCTC+CGG - chr7_4:46568431-46568450 Msa1157570:five_prime_UTR 35.0%
ATGCATGTTCATCCACTCAA+CGG - chr7_4:46564988-46565007 Msa1157570:three_prime_UTR 40.0%
TCTGAACTCATCTCATCTTC+TGG - chr7_4:46565200-46565219 Msa1157570:CDS 40.0%
CTGAAGGATGCAATTGAACT+TGG + chr7_4:46565291-46565310 None:intergenic 40.0%
CATGAATTATTTCCCAGACG+AGG - chr7_4:46565688-46565707 Msa1157570:CDS 40.0%
CATGTTCTATTACCTCGTCT+GGG + chr7_4:46565703-46565722 None:intergenic 40.0%
ACATGTTCTATTACCTCGTC+TGG + chr7_4:46565704-46565723 None:intergenic 40.0%
GTTACTCTATTAGTCCTGAG+AGG - chr7_4:46565831-46565850 Msa1157570:CDS 40.0%
! TTAGTTTGGTTCCTCATGGT+TGG - chr7_4:46565918-46565937 Msa1157570:CDS 40.0%
! TAGTTTGGTTCCTCATGGTT+GGG - chr7_4:46565919-46565938 Msa1157570:CDS 40.0%
TTAGCAAGTGCTTCAATCCA+TGG + chr7_4:46565959-46565978 None:intergenic 40.0%
! GCACTTGCTAAGAATAAGGT+TGG - chr7_4:46565968-46565987 Msa1157570:intron 40.0%
AAGAACGAGAAAGTAGCTCA+AGG + chr7_4:46566039-46566058 None:intergenic 40.0%
GCAAAATGGTTGGATGACTT+TGG - chr7_4:46566451-46566470 Msa1157570:CDS 40.0%
AAGCACAAGCCATTCGATAT+GGG + chr7_4:46566815-46566834 None:intergenic 40.0%
AAAGCACAAGCCATTCGATA+TGG + chr7_4:46566816-46566835 None:intergenic 40.0%
CTTCAACTTCATTCTCTTGC+AGG + chr7_4:46566870-46566889 None:intergenic 40.0%
TTGAAGATCACAAAGGACAG+TGG - chr7_4:46566884-46566903 Msa1157570:intron 40.0%
CTCCTAACCTTAAGAGTCTA+AGG - chr7_4:46567010-46567029 Msa1157570:intron 40.0%
!! AGCACCTCAACTAATGGATT+TGG - chr7_4:46567080-46567099 Msa1157570:intron 40.0%
!! GCACCTCAACTAATGGATTT+GGG - chr7_4:46567081-46567100 Msa1157570:intron 40.0%
AGGCATCTGAATTGAGATCA+TGG + chr7_4:46567122-46567141 None:intergenic 40.0%
! TGACTTGCACTTAAGAATGG+TGG + chr7_4:46567160-46567179 None:intergenic 40.0%
AAGTCAATAACCAGTCTGTC+AGG - chr7_4:46567174-46567193 Msa1157570:intron 40.0%
AGTCAATAACCAGTCTGTCA+GGG - chr7_4:46567175-46567194 Msa1157570:intron 40.0%
TAAAACTTATTCGCCACTGC+GGG - chr7_4:46567304-46567323 Msa1157570:intron 40.0%
AGAGAGAGCAATAAGTGGAT+TGG + chr7_4:46567522-46567541 None:intergenic 40.0%
CTCTCTCCAGTAAATACTCA+AGG - chr7_4:46567536-46567555 Msa1157570:CDS 40.0%
!! TTGCAGATAATGGATCGCAT+TGG - chr7_4:46567584-46567603 Msa1157570:CDS 40.0%
AGGACTTGTAGCGATATCAA+TGG - chr7_4:46567709-46567728 Msa1157570:CDS 40.0%
GGACTTGTAGCGATATCAAT+GGG - chr7_4:46567710-46567729 Msa1157570:CDS 40.0%
TAGAGTAATGAGTGGAGCTT+AGG + chr7_4:46567740-46567759 None:intergenic 40.0%
GACAGAAGTAGAGTAATGAG+TGG + chr7_4:46567748-46567767 None:intergenic 40.0%
TACTGTTATGAGAGCAGCAT+TGG + chr7_4:46567780-46567799 None:intergenic 40.0%
! GCCCAAATTTTATCCGATTC+AGG - chr7_4:46567810-46567829 Msa1157570:CDS 40.0%
TTCCAATGTAAAGGAAGACC+TGG + chr7_4:46567961-46567980 None:intergenic 40.0%
CAGCGTACATTCCAATGTAA+AGG + chr7_4:46567970-46567989 None:intergenic 40.0%
GAGATTAGAGACTGTCCATT+CGG - chr7_4:46568082-46568101 Msa1157570:five_prime_UTR 40.0%
ATGAAACAATGCGATCCCTT+TGG - chr7_4:46568137-46568156 Msa1157570:five_prime_UTR 40.0%
AAGATCTCCACATTCAACCT+CGG + chr7_4:46568217-46568236 None:intergenic 40.0%
GATCTTCAGTGAAAGTGAAC+AGG - chr7_4:46568231-46568250 Msa1157570:five_prime_UTR 40.0%
TGAACAGGCAGATTGTTATG+TGG - chr7_4:46568246-46568265 Msa1157570:five_prime_UTR 40.0%
GCAGATTGTTATGTGGAAGA+TGG - chr7_4:46568253-46568272 Msa1157570:five_prime_UTR 40.0%
TATTTGTATCGTACAGTGGC+TGG - chr7_4:46568295-46568314 Msa1157570:five_prime_UTR 40.0%
ATTTGTATCGTACAGTGGCT+GGG - chr7_4:46568296-46568315 Msa1157570:five_prime_UTR 40.0%
TACAGAGTCCATACATAGTC+GGG + chr7_4:46568337-46568356 None:intergenic 40.0%
CTACAGAGTCCATACATAGT+CGG + chr7_4:46568338-46568357 None:intergenic 40.0%
CAAACCACTAAATATCCGGA+GGG + chr7_4:46568449-46568468 None:intergenic 40.0%
ACAAACCACTAAATATCCGG+AGG + chr7_4:46568450-46568469 None:intergenic 40.0%
AGCTCTTGCATCATCAATCA+TGG + chr7_4:46568563-46568582 None:intergenic 40.0%
AGAGAATCTTGACCGTTGAG+TGG + chr7_4:46565003-46565022 None:intergenic 45.0%
TAGAGAGATGAATCGAACGG+TGG + chr7_4:46565052-46565071 None:intergenic 45.0%
AGAGAGAGATGCGAAAATGG+TGG + chr7_4:46565137-46565156 None:intergenic 45.0%
GAGAGAGAGAGATGCGAAAA+TGG + chr7_4:46565140-46565159 None:intergenic 45.0%
CTCTATTAGTCCTGAGAGGT+TGG - chr7_4:46565835-46565854 Msa1157570:CDS 45.0%
TATTAGTCCTGAGAGGTTGG+TGG - chr7_4:46565838-46565857 Msa1157570:CDS 45.0%
! AGTTTGGTTCCTCATGGTTG+GGG - chr7_4:46565920-46565939 Msa1157570:CDS 45.0%
!!! GGGGTGGTTTTGTTTATCCA+TGG - chr7_4:46565939-46565958 Msa1157570:intron 45.0%
!! AGGTTGGTTTGGAGGAACTT+AGG - chr7_4:46565984-46566003 Msa1157570:intron 45.0%
!! TGGAGGAACTTAGGTTGAAG+AGG - chr7_4:46565993-46566012 Msa1157570:intron 45.0%
!! GGAACTTAGGTTGAAGAGGA+TGG - chr7_4:46565997-46566016 Msa1157570:intron 45.0%
TGTGAAGGGTTCACTACTGA+TGG - chr7_4:46566091-46566110 Msa1157570:intron 45.0%
AATTAGCAGCAACAGCAGCA+AGG + chr7_4:46566117-46566136 None:intergenic 45.0%
TCTTGACCTCCCATATCGAA+TGG - chr7_4:46566803-46566822 Msa1157570:intron 45.0%
ACAAGTGATGTGCAGCTTTC+TGG + chr7_4:46566922-46566941 None:intergenic 45.0%
! ATCCTTTGCAATGCATCGAC+AGG + chr7_4:46567051-46567070 None:intergenic 45.0%
AATGCGAGCACCTCAACTAA+TGG - chr7_4:46567074-46567093 Msa1157570:intron 45.0%
! GGTGGCCTTAAACTTAGCAT+AGG + chr7_4:46567142-46567161 None:intergenic 45.0%
! AACCAGTCTGTCAGGGTTTT+TGG - chr7_4:46567182-46567201 Msa1157570:intron 45.0%
TTCCAAAAACCCTGACAGAC+TGG + chr7_4:46567187-46567206 None:intergenic 45.0%
!! TCTGTCAGGGTTTTTGGAAG+TGG - chr7_4:46567188-46567207 Msa1157570:intron 45.0%
TGCTGCATAGCTCAAGTTCA+AGG + chr7_4:46567262-46567281 None:intergenic 45.0%
TTGAACTTGAGCTATGCAGC+AGG - chr7_4:46567261-46567280 Msa1157570:intron 45.0%
ACTGGAGAGAGAGCAATAAG+TGG + chr7_4:46567527-46567546 None:intergenic 45.0%
AATGGATCGCATTGGAGACT+TGG - chr7_4:46567592-46567611 Msa1157570:CDS 45.0%
ATGGATCGCATTGGAGACTT+GGG - chr7_4:46567593-46567612 Msa1157570:CDS 45.0%
! GTTTTCCCATCAGCTCCATT+TGG - chr7_4:46567662-46567681 Msa1157570:CDS 45.0%
GGTTTCCAAATGGAGCTGAT+GGG + chr7_4:46567670-46567689 None:intergenic 45.0%
TGGTTTCCAAATGGAGCTGA+TGG + chr7_4:46567671-46567690 None:intergenic 45.0%
ACAGCTGCTTGGTTTCCAAA+TGG + chr7_4:46567680-46567699 None:intergenic 45.0%
!!! CTTTTTCGGTAACAGCTGCT+TGG + chr7_4:46567691-46567710 None:intergenic 45.0%
CAAGCAGCTGTTACCGAAAA+AGG - chr7_4:46567689-46567708 Msa1157570:CDS 45.0%
! AGCCGCTAGATGAAGGTTTT+GGG - chr7_4:46567876-46567895 Msa1157570:five_prime_UTR 45.0%
ATCACTCTCAGGTCAGTTGA+CGG - chr7_4:46567934-46567953 Msa1157570:five_prime_UTR 45.0%
GACCAGGTCTTCCTTTACAT+TGG - chr7_4:46567956-46567975 Msa1157570:five_prime_UTR 45.0%
CATTAGCTAAGAAGATGCCG+AGG - chr7_4:46568197-46568216 Msa1157570:five_prime_UTR 45.0%
AAGATGCACCCGACTATGTA+TGG - chr7_4:46568326-46568345 Msa1157570:five_prime_UTR 45.0%
CGACTATGTATGGACTCTGT+AGG - chr7_4:46568336-46568355 Msa1157570:five_prime_UTR 45.0%
! GGACTCTGTAGGTGCATTTT+AGG - chr7_4:46568347-46568366 Msa1157570:five_prime_UTR 45.0%
TAGTCCCTCCGGATATTTAG+TGG - chr7_4:46568442-46568461 Msa1157570:five_prime_UTR 45.0%
GATGAATCGAACGGTGGAGA+TGG + chr7_4:46565046-46565065 None:intergenic 50.0%
ACAAAACCACCCCAACCATG+AGG + chr7_4:46565932-46565951 None:intergenic 50.0%
CTGCTGTTGCTGCTAATTGC+AGG - chr7_4:46566119-46566138 Msa1157570:intron 50.0%
CACAAGCCATTCGATATGGG+AGG + chr7_4:46566812-46566831 None:intergenic 50.0%
!! GAGAGCACTTGAGAGACTTG+TGG - chr7_4:46566981-46567000 Msa1157570:intron 50.0%
TGCCTGTCGATGCATTGCAA+AGG - chr7_4:46567046-46567065 Msa1157570:intron 50.0%
AGCTATGCAGCAGGCATTCT+GGG - chr7_4:46567270-46567289 Msa1157570:intron 50.0%
CGGGAAACTACAGCGCTTAT+GGG - chr7_4:46567323-46567342 Msa1157570:intron 50.0%
!! TGAGAGCAGCATTGGTCATC+TGG + chr7_4:46567772-46567791 None:intergenic 50.0%
!!! GGTCAGGTTTTGTTGCGTCA+AGG + chr7_4:46567844-46567863 None:intergenic 50.0%
ACAATGCAGCCGCTAGATGA+AGG - chr7_4:46567869-46567888 Msa1157570:five_prime_UTR 50.0%
! CAGCCGCTAGATGAAGGTTT+TGG - chr7_4:46567875-46567894 Msa1157570:five_prime_UTR 50.0%
! GCCGCTAGATGAAGGTTTTG+GGG - chr7_4:46567877-46567896 Msa1157570:five_prime_UTR 50.0%
GCCCCAAAACCTTCATCTAG+CGG + chr7_4:46567881-46567900 None:intergenic 50.0%
! ATTTGCTGGCGAGAGTGACA+AGG - chr7_4:46568015-46568034 Msa1157570:five_prime_UTR 50.0%
TTTGCTGGCGAGAGTGACAA+GGG - chr7_4:46568016-46568035 Msa1157570:five_prime_UTR 50.0%
AGACTGTCCATTCGGAGACA+CGG - chr7_4:46568090-46568109 Msa1157570:five_prime_UTR 50.0%
ACGGCGCTTCTAACAGACAT+AGG - chr7_4:46568109-46568128 Msa1157570:five_prime_UTR 50.0%
CGGCGCTTCTAACAGACATA+GGG - chr7_4:46568110-46568129 Msa1157570:five_prime_UTR 50.0%
GAAGATGCCGAGGTTGAATG+TGG - chr7_4:46568207-46568226 Msa1157570:five_prime_UTR 50.0%
ATCGTACAGTGGCTGGGAAA+AGG - chr7_4:46568302-46568321 Msa1157570:five_prime_UTR 50.0%
TCGTACAGTGGCTGGGAAAA+GGG - chr7_4:46568303-46568322 Msa1157570:five_prime_UTR 50.0%
AACCTCTCCACCAACCTCTC+AGG + chr7_4:46565848-46565867 None:intergenic 55.0%
TTGGTTCCTCATGGTTGGGG+TGG - chr7_4:46565923-46565942 Msa1157570:CDS 55.0%
GAGCTATGCAGCAGGCATTC+TGG - chr7_4:46567269-46567288 Msa1157570:intron 55.0%
GCGGGAAACTACAGCGCTTA+TGG - chr7_4:46567322-46567341 Msa1157570:intron 55.0%
CGCATTGGAGACTTGGGACT+AGG - chr7_4:46567599-46567618 Msa1157570:CDS 55.0%
CTAGCGGCTGCATTGTGTCA+GGG + chr7_4:46567865-46567884 None:intergenic 55.0%
TCTAGCGGCTGCATTGTGTC+AGG + chr7_4:46567866-46567885 None:intergenic 55.0%
TGCAGTCTTGCAAGCGACTG+AGG - chr7_4:46567906-46567925 Msa1157570:five_prime_UTR 55.0%
AGTCTTGCAAGCGACTGAGG+CGG - chr7_4:46567909-46567928 Msa1157570:five_prime_UTR 55.0%
CTCGCACGACGACATCCAAA+GGG + chr7_4:46568155-46568174 None:intergenic 55.0%
TGTGGAAGATGGGCAGAGAG+TGG - chr7_4:46568264-46568283 Msa1157570:five_prime_UTR 55.0%
!! GTCCTGAGAGGTTGGTGGAG+AGG - chr7_4:46565843-46565862 Msa1157570:CDS 60.0%
AGCGCTGTAGTTTCCCGCAG+TGG + chr7_4:46567320-46567339 None:intergenic 60.0%
GGCTGCATTGTGTCAGGGTC+AGG + chr7_4:46567860-46567879 None:intergenic 60.0%
CTGAGGCGGCTATCACTCTC+AGG - chr7_4:46567923-46567942 Msa1157570:five_prime_UTR 60.0%
! CTCAGGTCAGTTGACGGACC+AGG - chr7_4:46567940-46567959 Msa1157570:five_prime_UTR 60.0%
!! AGAAGCGCCGTGTCTCCGAA+TGG + chr7_4:46568100-46568119 None:intergenic 60.0%
CCTCGCACGACGACATCCAA+AGG + chr7_4:46568156-46568175 None:intergenic 60.0%
CCTTTGGATGTCGTCGTGCG+AGG - chr7_4:46568153-46568172 Msa1157570:five_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 46564944 46568597 46564944 ID=Msa1157570;Name=Msa1157570
chr7_4 mRNA 46564944 46568597 46564944 ID=Msa1157570-mRNA-1;Parent=Msa1157570;Name=Msa1157570-mRNA-1;_AED=0.05;_eAED=0.05;_QI=745|1|1|1|1|1|3|240|571
chr7_4 exon 46564944 46565951 46564944 ID=Msa1157570-mRNA-1:exon:12208;Parent=Msa1157570-mRNA-1
chr7_4 exon 46566197 46566692 46566197 ID=Msa1157570-mRNA-1:exon:12207;Parent=Msa1157570-mRNA-1
chr7_4 exon 46567401 46568597 46567401 ID=Msa1157570-mRNA-1:exon:12206;Parent=Msa1157570-mRNA-1
chr7_4 five_prime_UTR 46567853 46568597 46567853 ID=Msa1157570-mRNA-1:five_prime_utr;Parent=Msa1157570-mRNA-1
chr7_4 CDS 46567401 46567852 46567401 ID=Msa1157570-mRNA-1:cds;Parent=Msa1157570-mRNA-1
chr7_4 CDS 46566197 46566692 46566197 ID=Msa1157570-mRNA-1:cds;Parent=Msa1157570-mRNA-1
chr7_4 CDS 46565184 46565951 46565184 ID=Msa1157570-mRNA-1:cds;Parent=Msa1157570-mRNA-1
chr7_4 three_prime_UTR 46564944 46565183 46564944 ID=Msa1157570-mRNA-1:three_prime_utr;Parent=Msa1157570-mRNA-1
Gene Sequence

>Msa1157570

ATGAATTATTTCCCAGACGAGGTAATAGAACATGTTTTTGACTATGTGGTTTCACATAGTGACAGAAACTCTTTGTCTTTGGTATGCAAAAGTTGGTATAGAATAGAGAGATTTACAAGACAAAGAGTTTTCATAGGAAACTGTTACTCTATTAGTCCTGAGAGGTTGGTGGAGAGGTTTCCTGATCTGAAATCTTTAACTTTGAAGGGAAAACCTCATTTTGCTGATTTTAGTTTGGTTCCTCATGGTTGGGGTGGTTTTGTTTATCCATGGATTGAAGCACTTGCTAAGAATAAGGTTGGTTTGGAGGAACTTAGGTTGAAGAGGATGGTTGTGTCAGATGAGAGCCTTGAGCTACTTTCTCGTTCTTTTGTGAATTTTAAGTCTTTAGTTCTTGTTAGCTGTGAAGGGTTCACTACTGATGGCCTTGCTGCTGTTGCTGCTAATTGCAGGTCTCTTAGGGAGCTAGACCTGCAAGAGAATGAAGTTGAAGATCACAAAGGACAGTGGCTAAGTTGCTTTCCAGAAAGCTGCACATCACTTGTCTCTCTTAATTTCGCTTGCCTTAAAGGCGATATTAATTTGAGAGCACTTGAGAGACTTGTGGCAAGATCTCCTAACCTTAAGAGTCTAAGGTTAAACAGATCTGTGCCTGTCGATGCATTGCAAAGGATACTAATGCGAGCACCTCAACTAATGGATTTGGGAATTGGATCGTTTTTCCATGATCTCAATTCAGATGCCTATGCTAAGTTTAAGGCCACCATTCTTAAGTGCAAGTCAATAACCAGTCTGTCAGGGTTTTTGGAAGTGGCTCCTTTTAGCCTTGCAGCTATTTATCCAATTTGCCAGAACTTAACATCCTTGAACTTGAGCTATGCAGCAGGCATTCTGGGCATCGAGCTGATAAAACTTATTCGCCACTGCGGGAAACTACAGCGCTTATGGATAATGGATCGCATTGGAGACTTGGGACTAGGTGTTGTAGCTAGCACATGTAAAGAATTGCAAGAATTAAGGGTTTTCCCATCAGCTCCATTTGGAAACCAAGCAGCTGTTACCGAAAAAGGACTTGTAGCGATATCAATGGGATGTCCTAAGCTCCACTCATTACTCTACTTCTGTCACCAGATGACCAATGCTGCTCTCATAACAGTAGCCAAAAACTGCCCAAATTTTATCCGATTCAGGTTATGTATCCTTGACGCAACAAAACCTGACCCTGACACAATGCAGCCGCTAGATGAAGGTTTTGGGGCAATCGTGCAGTCTTGCAAGCGACTGAGGCGGCTATCACTCTCAGGTCAGTTGACGGACCAGGTCTTCCTTTACATTGGAATGTACGCTGAGCAGCTTGAAATGTTGTCTATTGCATTTGCTGGCGAGAGTGACAAGGGAATGCTCTATGTATTGAACGGATGCAAAAAGATTCGCAAGCTTGAGATTAGAGACTGTCCATTCGGAGACACGGCGCTTCTAACAGACATAGGGAAGTATGAAACAATGCGATCCCTTTGGATGTCGTCGTGCGAGGTGACTGTAGAAGCATGCAAGACATTAGCTAAGAAGATGCCGAGGTTGAATGTGGAGATCTTCAGTGAAAGTGAACAGGCAGATTGTTATGTGGAAGATGGGCAGAGAGTGGAGAAGATGTATTTGTATCGTACAGTGGCTGGGAAAAGGGAAGATGCACCCGACTATGTATGGACTCTGTAG

Protein sequence

>Msa1157570

MNYFPDEVIEHVFDYVVSHSDRNSLSLVCKSWYRIERFTRQRVFIGNCYSISPERLVERFPDLKSLTLKGKPHFADFSLVPHGWGGFVYPWIEALAKNKVGLEELRLKRMVVSDESLELLSRSFVNFKSLVLVSCEGFTTDGLAAVAANCRSLRELDLQENEVEDHKGQWLSCFPESCTSLVSLNFACLKGDINLRALERLVARSPNLKSLRLNRSVPVDALQRILMRAPQLMDLGIGSFFHDLNSDAYAKFKATILKCKSITSLSGFLEVAPFSLAAIYPICQNLTSLNLSYAAGILGIELIKLIRHCGKLQRLWIMDRIGDLGLGVVASTCKELQELRVFPSAPFGNQAAVTEKGLVAISMGCPKLHSLLYFCHQMTNAALITVAKNCPNFIRFRLCILDATKPDPDTMQPLDEGFGAIVQSCKRLRRLSLSGQLTDQVFLYIGMYAEQLEMLSIAFAGESDKGMLYVLNGCKKIRKLEIRDCPFGDTALLTDIGKYETMRSLWMSSCEVTVEACKTLAKKMPRLNVEIFSESEQADCYVEDGQRVEKMYLYRTVAGKREDAPDYVWTL*