AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1352530


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1352530 MtrunA17_Chr7g0274311 96.343 875 28 3 1 873 1 873 0.0 1722
Msa1352530 MtrunA17_Chr1g0184441 33.814 763 394 25 10 726 14 711 8.78e-90 304
Msa1352530 MtrunA17_Chr5g0434681 34.536 388 229 8 504 866 578 965 4.52e-32 134
Msa1352530 MtrunA17_Chr5g0434681 37.975 158 75 3 19 168 16 158 6.66e-26 115
Msa1352530 MtrunA17_Chr8g0376151 57.143 133 54 2 506 635 563 695 3.34e-29 125
Msa1352530 MtrunA17_Chr8g0376151 47.887 71 36 1 43 112 40 110 1.39e-14 78.2
Msa1352530 MtrunA17_Chr3g0093241 30.859 256 136 11 28 269 25 253 7.21e-24 106
Msa1352530 MtrunA17_Chr3g0093241 60.000 100 40 0 537 636 331 430 1.85e-22 102
Msa1352530 MtrunA17_Chr4g0059771 34.615 156 92 4 24 170 21 175 4.85e-21 97.8
Msa1352530 MtrunA17_Chr4g0059771 52.846 123 58 0 514 636 306 428 1.92e-18 89.7
Msa1352530 MtrunA17_Chr2g0307041 38.889 108 62 1 529 636 12 115 1.86e-11 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1352530 AT1G08800.2 43.553 349 150 6 414 759 766 1070 4.71e-70 252
Msa1352530 AT1G08800.2 44.737 228 103 8 18 242 4 211 1.15e-42 169
Msa1352530 AT1G08800.4 43.553 349 150 6 414 759 766 1070 4.71e-70 252
Msa1352530 AT1G08800.4 44.737 228 103 8 18 242 4 211 1.15e-42 169
Msa1352530 AT1G08800.3 43.553 349 150 6 414 759 766 1070 4.71e-70 252
Msa1352530 AT1G08800.3 44.737 228 103 8 18 242 4 211 1.15e-42 169
Msa1352530 AT1G08800.1 43.553 349 150 6 414 759 766 1070 4.71e-70 252
Msa1352530 AT1G08800.1 44.737 228 103 8 18 242 4 211 1.15e-42 169
Msa1352530 AT2G30690.1 66.949 118 39 0 526 643 602 719 3.25e-41 162
Msa1352530 AT2G30690.1 34.728 239 126 9 24 253 19 236 2.57e-28 122
Msa1352530 AT2G30690.2 66.949 118 39 0 526 643 602 719 3.25e-41 162
Msa1352530 AT2G30690.2 34.728 239 126 9 24 253 19 236 2.57e-28 122
Msa1352530 AT1G70750.1 32.178 404 227 12 485 868 365 741 1.81e-35 145
Msa1352530 AT1G70750.1 40.566 106 54 3 19 116 16 120 2.17e-14 77.8
Msa1352530 AT5G16720.1 31.467 375 202 10 509 863 322 661 6.76e-29 124
Msa1352530 AT5G16720.1 30.088 226 109 6 1 214 1 189 1.76e-22 103
Msa1352530 AT1G74830.1 54.867 113 51 0 524 636 289 401 5.39e-24 107
Msa1352530 AT1G74830.1 34.706 170 87 5 24 170 40 208 6.24e-23 104
Msa1352530 AT1G18990.1 57.547 106 45 0 531 636 295 400 4.98e-22 101
Msa1352530 AT1G18990.1 44.681 94 47 3 41 133 41 130 4.12e-15 79.7
Msa1352530 AT5G06560.1 28.054 221 136 3 475 683 20 229 1.81e-14 77.8
Msa1352530 AT4G13630.2 37.956 137 84 1 508 644 194 329 2.08e-13 74.3
Msa1352530 AT4G13630.1 37.956 137 84 1 508 644 194 329 2.08e-13 74.3
Msa1352530 AT3G54740.3 33.088 136 82 2 548 674 82 217 2.55e-11 67.4
Msa1352530 AT3G54740.6 33.088 136 82 2 548 674 82 217 2.55e-11 67.4
Msa1352530 AT3G54740.2 33.088 136 82 2 548 674 82 217 2.55e-11 67.4
Msa1352530 AT3G54740.5 33.088 136 82 2 548 674 82 217 2.55e-11 67.4
Msa1352530 AT3G54740.8 33.088 136 82 2 548 674 34 169 3.46e-11 66.6
Msa1352530 AT3G54740.1 33.088 136 82 2 548 674 34 169 3.46e-11 66.6
Msa1352530 AT3G54740.7 33.088 136 82 2 548 674 34 169 3.46e-11 66.6
Msa1352530 AT3G54740.4 33.088 136 82 2 548 674 34 169 3.46e-11 66.6

Find 182 sgRNAs with CRISPR-Local

Find 287 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTGAACGTTTGAAGAAAT+TGG 0.165586 tig0012609:-11198 Msa1352530:CDS
ACAGAAAAGAGGTTATTATT+TGG 0.203314 tig0012609:-13421 Msa1352530:CDS
TCATCCAGGTTACAAGAAAA+TGG 0.214605 tig0012609:-9454 Msa1352530:three_prime_UTR
ATGAAGTTTCATCTTCTTCT+AGG 0.218327 tig0012609:-13623 Msa1352530:CDS
CTTGCAAACTGGAGGTTTCT+TGG 0.222572 tig0012609:+10998 Msa1352530:intergenic
TCAGCTTTGTCATAGATATT+AGG 0.235113 tig0012609:+11305 Msa1352530:intergenic
GAACTAACATTGTTTGTATA+TGG 0.240257 tig0012609:-9224 Msa1352530:three_prime_UTR
GCTGTTGATTTCAATGATTC+AGG 0.244211 tig0012609:-13078 Msa1352530:CDS
TCACCAAGATCTAGCAAATT+AGG 0.270537 tig0012609:+12073 Msa1352530:intergenic
TATACCGTCATCATCTGATA+TGG 0.279522 tig0012609:+12900 Msa1352530:intergenic
CTCACCAGTCTCAGGATAAT+TGG 0.280875 tig0012609:-11148 Msa1352530:CDS
CCGGCTATTGCTTGGTAAAT+CGG 0.294179 tig0012609:-13253 Msa1352530:CDS
AAGAGTTCCATGTGAATATA+TGG 0.311089 tig0012609:-12836 Msa1352530:CDS
TTCACTATTCATAGACAATC+TGG 0.317037 tig0012609:+11886 Msa1352530:intergenic
TGTTCAATGTACCTTCTTCC+TGG 0.317551 tig0012609:+9534 Msa1352530:intergenic
GTTGCTTGAGGATGTATATA+AGG 0.322444 tig0012609:-10726 Msa1352530:intron
TGATTTGACTAGAAAGAATA+TGG 0.323167 tig0012609:-13655 Msa1352530:exon
TTTAGCTTCTACTGGAAGTT+TGG 0.323708 tig0012609:-10916 Msa1352530:CDS
CAAAGTAAACCAACCCAAAA+AGG 0.332256 tig0012609:+14005 Msa1352530:intergenic
CCTGAGACTGGTGAGAATTC+AGG 0.333607 tig0012609:+11156 Msa1352530:intergenic
CTTGTTGTAGTGAGAAATTC+CGG 0.335872 tig0012609:-13152 Msa1352530:CDS
GAAATGAAGGTAAAAGATAT+TGG 0.340452 tig0012609:-11389 Msa1352530:CDS
AATCCTAATTTGCTAGATCT+TGG 0.352539 tig0012609:-12076 Msa1352530:CDS
AATCCAATGCCGAGACTTCC+CGG 0.360389 tig0012609:-13272 Msa1352530:CDS
GGAACATCGTTGAAGGAAAT+AGG 0.362320 tig0012609:+12592 Msa1352530:intergenic
CCTCCAGTTTGCAAGCAAAA+TGG 0.367530 tig0012609:-10990 Msa1352530:CDS
TGGCTTCAGCTTTACTTGAA+TGG 0.372014 tig0012609:-13566 Msa1352530:CDS
TACATTGAACAACGGTGAAC+CGG 0.373745 tig0012609:-9522 Msa1352530:three_prime_UTR
TGATACTGAGTCTGAATTTG+AGG 0.377119 tig0012609:-12926 Msa1352530:CDS
TTCTCCGGCTTTGATTCGTC+AGG 0.388551 tig0012609:+11431 Msa1352530:intergenic
GATAATGATTTAGCTTCTAC+TGG 0.392018 tig0012609:-10924 Msa1352530:CDS
TGGAAGCCTTGCAGCACTTA+AGG 0.395831 tig0012609:-11577 Msa1352530:CDS
GACGAAACCGAATCTTTCAT+TGG 0.397908 tig0012609:+11062 Msa1352530:intergenic
TGAAGGACTTAAGTTATTGC+AGG 0.398234 tig0012609:-10808 Msa1352530:CDS
CAAAAGAATTACAACATCAT+TGG 0.399339 tig0012609:-13586 Msa1352530:CDS
CGATCCTGCGTAATTGTTGC+AGG 0.399676 tig0012609:+10772 Msa1352530:intergenic
GATATTGCTGTCACAATTCT+CGG 0.403853 tig0012609:-11948 Msa1352530:CDS
TCTTCCTGGTGGCTAATCAT+TGG 0.407216 tig0012609:+9548 Msa1352530:intergenic
AAATATTCCAATGAAAGATT+CGG 0.408471 tig0012609:-11069 Msa1352530:CDS
TTGCCAAGTCAATTCGGTCT+AGG 0.416167 tig0012609:-13101 Msa1352530:CDS
CCTGAATTCTCACCAGTCTC+AGG 0.416604 tig0012609:-11156 Msa1352530:CDS
CTTGGTCAACATACAGTTGC+CGG 0.419687 tig0012609:-13183 Msa1352530:CDS
AAACGAATCTGGTTTGTCTC+TGG 0.419823 tig0012609:-11792 Msa1352530:CDS
ATCTGCACAAAGTTTACAAA+TGG 0.427450 tig0012609:-11246 Msa1352530:CDS
CGGCTATTGCTTGGTAAATC+GGG 0.428787 tig0012609:-13252 Msa1352530:CDS
TGCTTGCAGAACATTGGCTT+GGG 0.429540 tig0012609:-12003 Msa1352530:CDS
CACTAGACTGCAGGAAGAAA+AGG 0.433393 tig0012609:-11612 Msa1352530:CDS
AAGCTAGCTGTCAGTAATAG+AGG 0.434545 tig0012609:-12043 Msa1352530:CDS
AAAACATTAAGTCAGGCAAT+AGG 0.437389 tig0012609:-12159 Msa1352530:CDS
TCGCTTGAGAGAAACGAATC+TGG 0.438552 tig0012609:-11803 Msa1352530:CDS
TTTGATCATGATCCATTACT+TGG 0.440915 tig0012609:-13201 Msa1352530:CDS
TGCCAAGTCAATTCGGTCTA+GGG 0.447748 tig0012609:-13100 Msa1352530:CDS
TGAAGGAAATAGGCTCGCTT+GGG 0.448680 tig0012609:+12602 Msa1352530:intergenic
TGAGCAGTCAGAATATGAAT+TGG 0.448855 tig0012609:-11546 Msa1352530:CDS
AGAAAAGGCAACGTTACATA+TGG 0.453577 tig0012609:-11597 Msa1352530:CDS
TTATACTTCTTCTTCATCTA+CGG 0.454120 tig0012609:-13895 Msa1352530:intron
TTCCTGCAGTCTAGTGATCA+TGG 0.454535 tig0012609:+11619 Msa1352530:intergenic
TGGAACTCTTATATCTTCCT+TGG 0.455358 tig0012609:+12849 Msa1352530:intergenic
TGGTATTTGCCAAGTCAATT+CGG 0.455380 tig0012609:-13107 Msa1352530:CDS
TCTGATGTTACTAACTCTAC+TGG 0.457443 tig0012609:-11851 Msa1352530:CDS
GATAAGCTTGTAAATATTCA+AGG 0.459464 tig0012609:-13339 Msa1352530:CDS
CCCAGAAAACTCGGAAAAGT+TGG 0.461420 tig0012609:-11096 Msa1352530:CDS
TTGAAGGAAATAGGCTCGCT+TGG 0.461485 tig0012609:+12601 Msa1352530:intergenic
CTGGCATGCTTGCAGAACAT+TGG 0.461821 tig0012609:-12009 Msa1352530:CDS
AGTGAGAAATTCCGGTTAGA+TGG 0.461919 tig0012609:-13144 Msa1352530:CDS
TGCAACAATTACGCAGGATC+GGG 0.464888 tig0012609:-10770 Msa1352530:CDS
TTCATTGAAAATGATGAAAG+TGG 0.465627 tig0012609:-11344 Msa1352530:CDS
TAGTATGCTCAAGGAAACTA+TGG 0.465704 tig0012609:+10853 Msa1352530:intergenic
CATCCAGGTTACAAGAAAAT+GGG 0.466838 tig0012609:-9453 Msa1352530:three_prime_UTR
AGAAGAAGATGAAACTTCAT+TGG 0.468520 tig0012609:+13626 Msa1352530:intergenic
AGGCTAATAACATCTGAAAC+AGG 0.470919 tig0012609:-12139 Msa1352530:CDS
GCAACAGTGGAAAGTGGAAA+TGG 0.471975 tig0012609:-12676 Msa1352530:CDS
TATATACATCCTCAAGCAAC+AGG 0.475282 tig0012609:+10729 Msa1352530:intergenic
TTTGATCATGACCATCTAAC+CGG 0.477980 tig0012609:+13133 Msa1352530:intergenic
CTGGAGGTTTCTTGGATGAC+GGG 0.481779 tig0012609:+11006 Msa1352530:intergenic
CTCTCAAACTCAAGGAAACA+AGG 0.481916 tig0012609:+9175 Msa1352530:intergenic
TGACATTCAACTCATGTCTT+CGG 0.483737 tig0012609:-11285 Msa1352530:CDS
GATCTGACTTCCACGAAGCC+CGG 0.486027 tig0012609:-12787 Msa1352530:CDS
CAAATTAAATTCAGATGCCA+TGG 0.486577 tig0012609:-11036 Msa1352530:CDS
TCTGTTATATTTGATAATGT+AGG 0.487402 tig0012609:+12571 Msa1352530:intergenic
TTCAATGATTCAGGTGTTGT+TGG 0.491677 tig0012609:-13069 Msa1352530:CDS
CCGATTTACCAAGCAATAGC+CGG 0.492472 tig0012609:+13253 Msa1352530:intergenic
GAGACTTCCCGGCTATTGCT+TGG 0.492566 tig0012609:-13261 Msa1352530:CDS
AGCTGAAGTCCCGGGCTTCG+TGG 0.493301 tig0012609:+12777 Msa1352530:intergenic
CGTGAAGAAAACATTAAGTC+AGG 0.493949 tig0012609:-12166 Msa1352530:CDS
GTTAGAAGACTTAGAAGCAA+AGG 0.496945 tig0012609:-11477 Msa1352530:CDS
TGACACGTATCAGTAGAAAC+CGG 0.499725 tig0012609:+12103 Msa1352530:intergenic
TAGATCTTCATTAACTCTTG+AGG 0.503418 tig0012609:+11973 Msa1352530:intergenic
AATAGAGGAAGACAATTGTC+TGG 0.503500 tig0012609:-12028 Msa1352530:CDS
CGAATCAAAGCCGGAGAACA+TGG 0.504178 tig0012609:-11426 Msa1352530:CDS
GAATGCTTTGTATAAAGAGC+TGG 0.504412 tig0012609:-11687 Msa1352530:CDS
AGATGGTCATGATCAAAGTC+TGG 0.504424 tig0012609:-13127 Msa1352530:CDS
TAATTCTGAAAATGTTGTAA+AGG 0.509055 tig0012609:-11123 Msa1352530:CDS
AAGTACAGAAGCTGAAGTCC+CGG 0.510760 tig0012609:+12768 Msa1352530:intergenic
AAGCAATAGCCGGGAAGTCT+CGG 0.512519 tig0012609:+13263 Msa1352530:intergenic
ATGGTTTGACAGAACTTGAC+TGG 0.512573 tig0012609:-12657 Msa1352530:CDS
AGCCATGATCACTAGACTGC+AGG 0.513907 tig0012609:-11621 Msa1352530:CDS
ATCTGACTTCCACGAAGCCC+GGG 0.516689 tig0012609:-12786 Msa1352530:CDS
TAGCCGGGAAGTCTCGGCAT+TGG 0.516845 tig0012609:+13269 Msa1352530:intergenic
TAATGTAGGAACATCGTTGA+AGG 0.518278 tig0012609:+12585 Msa1352530:intergenic
ACTTTCCACTGTTGCTTCTG+CGG 0.522511 tig0012609:+12684 Msa1352530:intergenic
AAAGACAAGTTGATCATGAC+AGG 0.522780 tig0012609:-11718 Msa1352530:CDS
ATACCGTCATCATCTGATAT+GGG 0.526049 tig0012609:+12901 Msa1352530:intergenic
ATGCTTGCAGAACATTGGCT+TGG 0.526665 tig0012609:-12004 Msa1352530:CDS
GAAGGTAAAAGATATTGGAT+TGG 0.527224 tig0012609:-11384 Msa1352530:CDS
CTGCAACAATTACGCAGGAT+CGG 0.529463 tig0012609:-10771 Msa1352530:CDS
ATGATTAGCCACCAGGAAGA+AGG 0.533932 tig0012609:-9545 Msa1352530:three_prime_UTR
ACTGGAGGTTTCTTGGATGA+CGG 0.535900 tig0012609:+11005 Msa1352530:intergenic
AATGGTGAACTTGAATACTC+TGG 0.536752 tig0012609:-10972 Msa1352530:CDS
CTTGCAGCACTTAAGGATGA+TGG 0.540707 tig0012609:-11570 Msa1352530:CDS
TGTACAGTTGCAACCAGTCA+TGG 0.548541 tig0012609:+9494 Msa1352530:intergenic
TAATGACCTACTTGCTGAGA+GGG 0.548758 tig0012609:-11507 Msa1352530:CDS
CGATTTACCAAGCAATAGCC+GGG 0.554396 tig0012609:+13254 Msa1352530:intergenic
TCACTATTCATAGACAATCT+GGG 0.555255 tig0012609:+11887 Msa1352530:intergenic
TCACAATTCTCGGCCACTCG+AGG 0.559052 tig0012609:-11938 Msa1352530:CDS
TAGGCCAATTATCCTGAGAC+TGG 0.559585 tig0012609:+11144 Msa1352530:intergenic
GAATCTGGTTTGTCTCTGGA+TGG 0.560438 tig0012609:-11788 Msa1352530:CDS
AGTACAGAAGCTGAAGTCCC+GGG 0.563633 tig0012609:+12769 Msa1352530:intergenic
GGTATAAGTATACCAATTCA+CGG 0.564865 tig0012609:-12883 Msa1352530:CDS
AGTGCCTGTTGAAGTATCAA+AGG 0.565324 tig0012609:-12548 Msa1352530:CDS
GCAGAAGCAACAGTGGAAAG+TGG 0.566398 tig0012609:-12682 Msa1352530:CDS
GTAAGTTGATAGTATGCTCA+AGG 0.567019 tig0012609:+10844 Msa1352530:intergenic
ACTACAACAAGAACAGTGTC+CGG 0.568490 tig0012609:+13164 Msa1352530:intergenic
TGAAAGGTTACAAGCTCTTG+AGG 0.569707 tig0012609:-10880 Msa1352530:CDS
GCAACCAGTCATGGTTTACC+CGG 0.572413 tig0012609:+9503 Msa1352530:intergenic
TGATATTGAAGGTGAAAGCC+CGG 0.574698 tig0012609:-11753 Msa1352530:CDS
CCTACTTGCTGAGAGGGAGA+AGG 0.576111 tig0012609:-11501 Msa1352530:CDS
AGCCCTAGACCGAATTGACT+TGG 0.576455 tig0012609:+13098 Msa1352530:intergenic
CACAATTCTCGGCCACTCGA+GGG 0.576714 tig0012609:-11937 Msa1352530:CDS
GAAATAGGCTCGCTTGGGGA+CGG 0.578388 tig0012609:+12607 Msa1352530:intergenic
ACATTGAACAACGGTGAACC+GGG 0.578467 tig0012609:-9521 Msa1352530:three_prime_UTR
TGAGTTCTGTGTAGCCTACA+CGG 0.579088 tig0012609:+12959 Msa1352530:intergenic
ACTGTATGTTGACCAAGTAA+TGG 0.581030 tig0012609:+13189 Msa1352530:intergenic
GACACGTATCAGTAGAAACC+GGG 0.582482 tig0012609:+12104 Msa1352530:intergenic
GTATAAGTATACCAATTCAC+GGG 0.584196 tig0012609:-12882 Msa1352530:CDS
CCTTCTCCCTCTCAGCAAGT+AGG 0.587122 tig0012609:+11501 Msa1352530:intergenic
TCTCCGGCTTTGATTCGTCA+GGG 0.587366 tig0012609:+11432 Msa1352530:intergenic
ATAGATCAACCTGTTGCTTG+AGG 0.588877 tig0012609:-10738 Msa1352530:exon
TGAACCGGGTAAACCATGAC+TGG 0.590111 tig0012609:-9507 Msa1352530:three_prime_UTR
TTACTGAGCGATGGAGGTGA+AGG 0.590371 tig0012609:-10825 Msa1352530:CDS
ACTATCAACTTACTGAGCGA+TGG 0.590607 tig0012609:-10834 Msa1352530:CDS
ACAATAGCTTGATATCATCC+AGG 0.590922 tig0012609:-9468 Msa1352530:three_prime_UTR
ATTCCCTGACGAATCAAAGC+CGG 0.593550 tig0012609:-11435 Msa1352530:CDS
AAAGGAATACCCAGAAAACT+CGG 0.594276 tig0012609:-11105 Msa1352530:CDS
TATACCAATGATTAGCCACC+AGG 0.595001 tig0012609:-9552 Msa1352530:three_prime_UTR
TCAATGTACCTTCTTCCTGG+TGG 0.595257 tig0012609:+9537 Msa1352530:intergenic
GGCATTGGATTTATCGACGA+CGG 0.602158 tig0012609:+13284 Msa1352530:intergenic
CAAATGCAGCAAAATGTCCA+AGG 0.604633 tig0012609:+9377 Msa1352530:intergenic
AAGTTTCATCTTCTTCTAGG+TGG 0.605634 tig0012609:-13620 Msa1352530:CDS
AACGTTTGAAGAAATTGGAG+AGG 0.616380 tig0012609:-11193 Msa1352530:CDS
GCGGATCCTTTGTCCCGTGT+AGG 0.618911 tig0012609:-12973 Msa1352530:CDS
ATCAACTTACTGAGCGATGG+AGG 0.624710 tig0012609:-10831 Msa1352530:CDS
CATGACTCCTCTGTTCTATG+TGG 0.625515 tig0012609:-10948 Msa1352530:CDS
TAAAACCGCAGAAGCAACAG+TGG 0.628074 tig0012609:-12689 Msa1352530:CDS
GAGTTCTGTGTAGCCTACAC+GGG 0.628936 tig0012609:+12960 Msa1352530:intergenic
ATACCAATTCACGGGAAAGA+CGG 0.631231 tig0012609:-12874 Msa1352530:CDS
ATCGCCTGCAACAATTACGC+AGG 0.632228 tig0012609:-10776 Msa1352530:CDS
CAAAGCTCCATATATTCACA+TGG 0.633331 tig0012609:+12829 Msa1352530:intergenic
CATCATCCTTAAGTGCTGCA+AGG 0.634038 tig0012609:+11571 Msa1352530:intergenic
AACAGGTTTAGAACCAACCC+CGG 0.634266 tig0012609:-12122 Msa1352530:CDS
TCTCAAACTCAAGGAAACAA+GGG 0.635400 tig0012609:+9176 Msa1352530:intergenic
AGCCTTGAACAAAACAAGCA+TGG 0.635478 tig0012609:+13462 Msa1352530:intergenic
GTGTAGCCTACACGGGACAA+AGG 0.635719 tig0012609:+12967 Msa1352530:intergenic
CTGTATCATTCAGAGATGCA+CGG 0.636931 tig0012609:-13011 Msa1352530:CDS
TGCTTTGTATAAAGAGCTGG+AGG 0.640545 tig0012609:-11684 Msa1352530:CDS
TGAATAATAATTGCAATGAG+TGG 0.646420 tig0012609:-9302 Msa1352530:three_prime_UTR
GAAGGAAATAGGCTCGCTTG+GGG 0.648938 tig0012609:+12603 Msa1352530:intergenic
AGCATTGTCAGTGATATTGA+AGG 0.649510 tig0012609:-11764 Msa1352530:CDS
TTGCAGTGTTGATTCAACTG+AGG 0.652343 tig0012609:-12809 Msa1352530:CDS
AGACATATCAGTCCCTCGAG+TGG 0.652981 tig0012609:+11925 Msa1352530:intergenic
GGATGACGGGTCATCAACCA+TGG 0.660163 tig0012609:+11019 Msa1352530:intergenic
GCATCTCTGAATGATACAGA+CGG 0.662265 tig0012609:+13015 Msa1352530:intergenic
CTAATGACCTACTTGCTGAG+AGG 0.665280 tig0012609:-11508 Msa1352530:CDS
TCACGGGAAAGACGGTACCA+AGG 0.682130 tig0012609:-12866 Msa1352530:CDS
GTTCCCATATCAGATGATGA+CGG 0.684913 tig0012609:-12904 Msa1352530:CDS
ATTATCTCCACATAGAACAG+AGG 0.694773 tig0012609:+10941 Msa1352530:intergenic
ATCAAAGCCGGAGAACATGG+TGG 0.695580 tig0012609:-11423 Msa1352530:CDS
ACGGCTGAGAAATGATCATG+CGG 0.699329 tig0012609:-12992 Msa1352530:CDS
GTATCAGTAGAAACCGGGGT+TGG 0.722796 tig0012609:+12109 Msa1352530:intergenic
ACTCGTGGTTCTGACAACAA+TGG 0.724092 tig0012609:+12742 Msa1352530:intergenic
GAAGAAGGTACATTGAACAA+CGG 0.737169 tig0012609:-9530 Msa1352530:three_prime_UTR
ACACGTATCAGTAGAAACCG+GGG 0.749513 tig0012609:+12105 Msa1352520:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACATTTATAATAGATTATTT+GGG + tig0012609:10856-10875 Msa1352530:intergenic 10.0%
!! TACATTTATAATAGATTATT+TGG + tig0012609:10857-10876 Msa1352530:intergenic 10.0%
!! AAATAATCTATTATAAATGT+AGG - tig0012609:10856-10875 Msa1352530:CDS 10.0%
!!! TACATTGATAATTTATATTT+TGG - tig0012609:12821-12840 Msa1352530:CDS 10.0%
!! ATTCTATATCATTTAAGAAA+TGG + tig0012609:10986-11005 Msa1352530:intergenic 15.0%
!!! ATTTATATTTTGGTTTTTTG+AGG - tig0012609:12831-12850 Msa1352530:CDS 15.0%
!! AAAAAAATTAATGTATGAAC+TGG - tig0012609:13382-13401 Msa1352530:CDS 15.0%
!!! GATTTTAACTTCATATATAA+TGG + tig0012609:13458-13477 Msa1352530:intergenic 15.0%
!! ATAAGATTATTTAATAGACA+CGG - tig0012609:13610-13629 Msa1352530:CDS 15.0%
!!! CAATTATTATTCATTTTACA+AGG + tig0012609:13944-13963 Msa1352530:intergenic 15.0%
!!! ACTTCTTTTTAATTCTTTTG+CGG + tig0012609:9223-9242 Msa0145710:intergenic 20.0%
!!! AAAAGAAGTTTAAACCTTTT+TGG - tig0012609:9234-9253 Msa1352530:three_prime_UTR 20.0%
!!! AAAGAAGTTTAAACCTTTTT+GGG - tig0012609:9235-9254 Msa1352530:three_prime_UTR 20.0%
!! TGAGGATTAATTATTATTAC+AGG + tig0012609:9425-9444 Msa1352530:intergenic 20.0%
!! AATAAGAAAAAGAAGTTATG+AGG + tig0012609:9443-9462 Msa1352530:intergenic 20.0%
!!! TTAGTTTAGTTTGTATAAAC+AGG + tig0012609:9485-9504 Msa1352530:intergenic 20.0%
!!! TCTGTTATATTTGATAATGT+AGG + tig0012609:10685-10704 Msa1352530:intergenic 20.0%
!!! GATTTTTCAACTGTATAAAA+AGG + tig0012609:10898-10917 Msa1352530:intergenic 20.0%
!!! AGATATTAGGATTTGATTTT+CGG + tig0012609:11938-11957 Msa1352530:intergenic 20.0%
!!! TTTACAACATTTTCAGAATT+AGG + tig0012609:12131-12150 Msa1352530:intergenic 20.0%
!!! TAATTCTGAAAATGTTGTAA+AGG - tig0012609:12130-12149 Msa1352530:CDS 20.0%
!! AAATATTCCAATGAAAGATT+CGG - tig0012609:12184-12203 Msa1352530:CDS 20.0%
!!! TTTTAAAAATGACTAAAGAG+TGG + tig0012609:12593-12612 Msa1352530:intergenic 20.0%
!! AATAAAACACTTTATTCTCA+AGG - tig0012609:12699-12718 Msa1352530:CDS 20.0%
!! ATTATCAATGTATCATTACA+GGG + tig0012609:12813-12832 Msa1352530:intergenic 20.0%
!! AATTATCAATGTATCATTAC+AGG + tig0012609:12814-12833 Msa1352530:intergenic 20.0%
!!! TATAGTTATTCAAGTTTAGT+TGG - tig0012609:12902-12921 Msa1352530:CDS 20.0%
!!! TAATTTTTTTCTTAGCTAGT+CGG + tig0012609:13372-13391 Msa1352530:intergenic 20.0%
!!! TATATGGCTTTTATTTTATG+TGG - tig0012609:14045-14064 Msa1352530:five_prime_UTR 20.0%
! TTATACTTCTTCTTCATCTA+CGG - tig0012609:9358-9377 Msa1352530:three_prime_UTR 25.0%
! TGATTTGACTAGAAAGAATA+TGG - tig0012609:9598-9617 Msa1352530:intron 25.0%
! CAAAAGAATTACAACATCAT+TGG - tig0012609:9667-9686 Msa1352530:intron 25.0%
! ACAGAAAAGAGGTTATTATT+TGG - tig0012609:9832-9851 Msa1352530:intron 25.0%
! GATAAGCTTGTAAATATTCA+AGG - tig0012609:9914-9933 Msa1352530:intron 25.0%
! TCATTTAAGAAATGGAGAAA+AGG + tig0012609:10978-10997 Msa1352530:intergenic 25.0%
! GAAATGAAGGTAAAAGATAT+TGG - tig0012609:11864-11883 Msa1352530:CDS 25.0%
! TTCATTGAAAATGATGAAAG+TGG - tig0012609:11909-11928 Msa1352530:CDS 25.0%
!!! ATATTAGGATTTGATTTTCG+GGG + tig0012609:11936-11955 Msa1352530:intergenic 25.0%
!!! GATATTAGGATTTGATTTTC+GGG + tig0012609:11937-11956 Msa1352530:intergenic 25.0%
!! TGGTTTCAGATTTTATTGAA+AGG - tig0012609:12357-12376 Msa1352530:intron 25.0%
!!! CTATTTTAGCATATTGAGTA+TGG - tig0012609:12634-12653 Msa1352530:CDS 25.0%
!!! TATATTTTGGTTTTTTGAGG+AGG - tig0012609:12834-12853 Msa1352530:CDS 25.0%
! AAATCGTGTAAGAACATATT+CGG - tig0012609:13106-13125 Msa1352530:CDS 25.0%
!! TCAGTTAACGAAATTTTCTA+GGG + tig0012609:13245-13264 Msa1352530:intergenic 25.0%
! GTAATTACGAATATGAAGTT+TGG + tig0012609:13302-13321 Msa1352530:intergenic 25.0%
! AATTAATGTATGAACTGGTT+TGG - tig0012609:13387-13406 Msa1352530:CDS 25.0%
!! CACAGTCGTTATTTAAATTT+TGG + tig0012609:13434-13453 Msa1352530:intergenic 25.0%
! CAAAATTTAAATAACGACTG+TGG - tig0012609:13432-13451 Msa1352530:CDS 25.0%
! TGAATAATAATTGCAATGAG+TGG - tig0012609:13951-13970 Msa1352530:five_prime_UTR 25.0%
! GAACTAACATTGTTTGTATA+TGG - tig0012609:14029-14048 Msa1352530:five_prime_UTR 25.0%
!!! AAGTTTAAACCTTTTTGGGT+TGG - tig0012609:9239-9258 Msa1352530:three_prime_UTR 30.0%
AGAAGAAGATGAAACTTCAT+TGG + tig0012609:9630-9649 Msa1352530:intergenic 30.0%
ATGAAGTTTCATCTTCTTCT+AGG - tig0012609:9630-9649 Msa1352530:intron 30.0%
TTTGATCATGATCCATTACT+TGG - tig0012609:10052-10071 Msa1352530:intron 30.0%
GGTATAAGTATACCAATTCA+CGG - tig0012609:10370-10389 Msa1352530:intron 30.0%
GTATAAGTATACCAATTCAC+GGG - tig0012609:10371-10390 Msa1352530:intron 30.0%
AAGAGTTCCATGTGAATATA+TGG - tig0012609:10417-10436 Msa1352530:intron 30.0%
! TTTTCCTTTGATACTTCAAC+AGG + tig0012609:10712-10731 Msa1352530:intergenic 30.0%
TTTCTTTACCATGTAATGCA+TGG - tig0012609:10757-10776 Msa1352530:CDS 30.0%
!!! TGATTTTAGAACTGACAAAG+AGG - tig0012609:11032-11051 Msa1352530:CDS 30.0%
! CTGACTTAATGTTTTCTTCA+CGG + tig0012609:11089-11108 Msa1352530:intergenic 30.0%
AAAACATTAAGTCAGGCAAT+AGG - tig0012609:11094-11113 Msa1352530:CDS 30.0%
!! AATCCTAATTTGCTAGATCT+TGG - tig0012609:11177-11196 Msa1352530:CDS 30.0%
TAGATCTTCATTAACTCTTG+AGG + tig0012609:11283-11302 Msa1352530:intergenic 30.0%
TCACTATTCATAGACAATCT+GGG + tig0012609:11369-11388 Msa1352530:intergenic 30.0%
TTCACTATTCATAGACAATC+TGG + tig0012609:11370-11389 Msa1352530:intergenic 30.0%
!! AAGCAAAGGTTGAGTTTTAT+AGG - tig0012609:11790-11809 Msa1352530:CDS 30.0%
GAAGGTAAAAGATATTGGAT+TGG - tig0012609:11869-11888 Msa1352530:CDS 30.0%
!! TATTAGGATTTGATTTTCGG+GGG + tig0012609:11935-11954 Msa1352530:intergenic 30.0%
! TCAGCTTTGTCATAGATATT+AGG + tig0012609:11951-11970 Msa1352530:intergenic 30.0%
ATCTGCACAAAGTTTACAAA+TGG - tig0012609:12007-12026 Msa1352530:CDS 30.0%
TTCTGAACGTTTGAAGAAAT+TGG - tig0012609:12055-12074 Msa1352530:CDS 30.0%
CAAATTAAATTCAGATGCCA+TGG - tig0012609:12217-12236 Msa1352530:CDS 30.0%
! GATAATGATTTAGCTTCTAC+TGG - tig0012609:12329-12348 Msa1352530:intron 30.0%
! AAATTTTCCCTTGCTTATCT+TGG + tig0012609:12675-12694 Msa1352530:intergenic 30.0%
! ATTCAAGTTTAGTTGGTTGT+CGG - tig0012609:12909-12928 Msa1352530:CDS 30.0%
ATTGAGTGAAGTCTTCTTTA+AGG - tig0012609:13032-13051 Msa1352530:CDS 30.0%
CATCAATGAATACTAAACTC+TGG + tig0012609:13079-13098 Msa1352530:intergenic 30.0%
CAGAGTTTAGTATTCATTGA+TGG - tig0012609:13077-13096 Msa1352530:CDS 30.0%
!!! AAACAGCAGGATTTTAATTC+AGG - tig0012609:13158-13177 Msa1352530:CDS 30.0%
! ACTAAACACCTATGATTTTG+TGG + tig0012609:13213-13232 Msa1352530:intergenic 30.0%
! CAGTTAACGAAATTTTCTAG+GGG + tig0012609:13244-13263 Msa1352530:intergenic 30.0%
! CTCAGTTAACGAAATTTTCT+AGG + tig0012609:13246-13265 Msa1352530:intergenic 30.0%
TATATTGTTGCTCTCAACAA+TGG - tig0012609:13519-13538 Msa1352530:CDS 30.0%
TTATTATGACGCAAAGTCTT+TGG + tig0012609:13594-13613 Msa1352530:intergenic 30.0%
CAAAGTAAACCAACCCAAAA+AGG + tig0012609:9251-9270 Msa1352530:intergenic 35.0%
AAGTTTCATCTTCTTCTAGG+TGG - tig0012609:9633-9652 Msa1352530:intron 35.0%
! TCAAGGCTTGATCATGTTTT+AGG - tig0012609:9806-9825 Msa1352530:intron 35.0%
!! GTTTTAGGCAAACAGAAAAG+AGG - tig0012609:9821-9840 Msa1352530:intron 35.0%
ACTGTATGTTGACCAAGTAA+TGG + tig0012609:10067-10086 Msa1352530:intergenic 35.0%
! CTTGTTGTAGTGAGAAATTC+CGG - tig0012609:10101-10120 Msa1352530:intron 35.0%
TTTGATCATGACCATCTAAC+CGG + tig0012609:10123-10142 Msa1352530:intergenic 35.0%
TGGTATTTGCCAAGTCAATT+CGG - tig0012609:10146-10165 Msa1352530:intron 35.0%
!! GCTGTTGATTTCAATGATTC+AGG - tig0012609:10175-10194 Msa1352530:intron 35.0%
! TTCAATGATTCAGGTGTTGT+TGG - tig0012609:10184-10203 Msa1352530:intron 35.0%
TGATACTGAGTCTGAATTTG+AGG - tig0012609:10327-10346 Msa1352530:intron 35.0%
ATACCGTCATCATCTGATAT+GGG + tig0012609:10355-10374 Msa1352530:intergenic 35.0%
TATACCGTCATCATCTGATA+TGG + tig0012609:10356-10375 Msa1352530:intergenic 35.0%
TGGAACTCTTATATCTTCCT+TGG + tig0012609:10407-10426 Msa1352530:intergenic 35.0%
CAAAGCTCCATATATTCACA+TGG + tig0012609:10427-10446 Msa1352530:intergenic 35.0%
! TTGTTTTCTACTTGTACTCG+TGG + tig0012609:10529-10548 Msa1352530:intergenic 35.0%
TAATGTAGGAACATCGTTGA+AGG + tig0012609:10671-10690 Msa1352530:intergenic 35.0%
CTTCAAATCCATGCATTACA+TGG + tig0012609:10768-10787 Msa1352530:intergenic 35.0%
CATGTAATGCATGGATTTGA+AGG - tig0012609:10766-10785 Msa1352530:CDS 35.0%
CGTGAAGAAAACATTAAGTC+AGG - tig0012609:11087-11106 Msa1352530:CDS 35.0%
! AGGCTAATAACATCTGAAAC+AGG - tig0012609:11114-11133 Msa1352530:CDS 35.0%
TCACCAAGATCTAGCAAATT+AGG + tig0012609:11183-11202 Msa1352530:intergenic 35.0%
AATAGAGGAAGACAATTGTC+TGG - tig0012609:11225-11244 Msa1352530:CDS 35.0%
GATATTGCTGTCACAATTCT+CGG - tig0012609:11305-11324 Msa1352530:CDS 35.0%
TCTGATGTTACTAACTCTAC+TGG - tig0012609:11402-11421 Msa1352530:CDS 35.0%
AGCATTGTCAGTGATATTGA+AGG - tig0012609:11489-11508 Msa1352530:CDS 35.0%
! TGTCTTTTAAGCTTGTCAAC+CGG + tig0012609:11522-11541 Msa1352530:intergenic 35.0%
!! AAAGACAAGTTGATCATGAC+AGG - tig0012609:11535-11554 Msa1352530:CDS 35.0%
GAATGCTTTGTATAAAGAGC+TGG - tig0012609:11566-11585 Msa1352530:CDS 35.0%
AGAAAAGGCAACGTTACATA+TGG - tig0012609:11656-11675 Msa1352530:CDS 35.0%
TGAGCAGTCAGAATATGAAT+TGG - tig0012609:11707-11726 Msa1352530:CDS 35.0%
GTTAGAAGACTTAGAAGCAA+AGG - tig0012609:11776-11795 Msa1352530:CDS 35.0%
!! GGAGAAAAACTCTGAAATGA+AGG - tig0012609:11851-11870 Msa1352530:CDS 35.0%
TGACATTCAACTCATGTCTT+CGG - tig0012609:11968-11987 Msa1352530:CDS 35.0%
AACGTTTGAAGAAATTGGAG+AGG - tig0012609:12060-12079 Msa1352530:CDS 35.0%
AAAGGAATACCCAGAAAACT+CGG - tig0012609:12148-12167 Msa1352530:CDS 35.0%
AATGGTGAACTTGAATACTC+TGG - tig0012609:12281-12300 Msa1352530:intron 35.0%
ATTATCTCCACATAGAACAG+AGG + tig0012609:12315-12334 Msa1352530:intergenic 35.0%
! TTTAGCTTCTACTGGAAGTT+TGG - tig0012609:12337-12356 Msa1352530:intron 35.0%
TAGTATGCTCAAGGAAACTA+TGG + tig0012609:12403-12422 Msa1352530:intergenic 35.0%
!! GTAAGTTGATAGTATGCTCA+AGG + tig0012609:12412-12431 Msa1352530:intergenic 35.0%
TGAAGGACTTAAGTTATTGC+AGG - tig0012609:12445-12464 Msa1352530:intron 35.0%
TATATACATCCTCAAGCAAC+AGG + tig0012609:12527-12546 Msa1352530:intergenic 35.0%
GTTGCTTGAGGATGTATATA+AGG - tig0012609:12527-12546 Msa1352530:intron 35.0%
! GTGCTTTTATCTTACGTCAA+TGG + tig0012609:12571-12590 Msa1352530:intergenic 35.0%
ATCAATGTATCATTACAGGG+AGG + tig0012609:12810-12829 Msa1352530:intergenic 35.0%
!!! TTTTCTCTAGAACAGAACTG+CGG + tig0012609:12950-12969 Msa1352530:intergenic 35.0%
!! CAGTTCTGTTCTAGAGAAAA+AGG - tig0012609:12950-12969 Msa1352530:CDS 35.0%
TTCGGACTGAGATTAACTAT+AGG - tig0012609:13124-13143 Msa1352530:CDS 35.0%
!! GTATGAACTGGTTTGGAATT+TGG - tig0012609:13394-13413 Msa1352530:CDS 35.0%
TAAAACTCTAACTACTGCAC+AGG + tig0012609:13490-13509 Msa1352530:intergenic 35.0%
! TGTGCAGTAGTTAGAGTTTT+AGG - tig0012609:13489-13508 Msa1352530:CDS 35.0%
! GAAGAAGGTACATTGAACAA+CGG - tig0012609:13723-13742 Msa1352530:five_prime_UTR 35.0%
ACAATAGCTTGATATCATCC+AGG - tig0012609:13785-13804 Msa1352530:intron 35.0%
TCATCCAGGTTACAAGAAAA+TGG - tig0012609:13799-13818 Msa1352530:intron 35.0%
CATCCAGGTTACAAGAAAAT+GGG - tig0012609:13800-13819 Msa1352530:intron 35.0%
! AATCCCATTTTCTTGTAACC+TGG + tig0012609:13806-13825 Msa1352530:intergenic 35.0%
! TTTTTCGCCCTTCCTTTTTT+TGG - tig0012609:13844-13863 Msa1352530:intron 35.0%
! TTTTCGCCCTTCCTTTTTTT+GGG - tig0012609:13845-13864 Msa1352530:intron 35.0%
ACTATCCCCAAAAAAAGGAA+GGG + tig0012609:13854-13873 Msa1352530:intergenic 35.0%
AACTATCCCCAAAAAAAGGA+AGG + tig0012609:13855-13874 Msa1352530:intergenic 35.0%
AGGAAACTATCCCCAAAAAA+AGG + tig0012609:13859-13878 Msa1352530:intergenic 35.0%
!!! TTTTTTGGGGATAGTTTCCT+TGG - tig0012609:13859-13878 Msa1352530:intron 35.0%
TGGCTTCAGCTTTACTTGAA+TGG - tig0012609:9687-9706 Msa1352530:intron 40.0%
!!! CACCATGCTTGTTTTGTTCA+AGG - tig0012609:9789-9808 Msa1352530:intron 40.0%
AGCCTTGAACAAAACAAGCA+TGG + tig0012609:9794-9813 Msa1352530:intergenic 40.0%
GGTGAAGAAGAAGAAGAATC+TGG - tig0012609:10022-10041 Msa1352530:intron 40.0%
ACTACAACAAGAACAGTGTC+CGG + tig0012609:10092-10111 Msa1352530:intergenic 40.0%
AGTGAGAAATTCCGGTTAGA+TGG - tig0012609:10109-10128 Msa1352530:intron 40.0%
AGATGGTCATGATCAAAGTC+TGG - tig0012609:10126-10145 Msa1352530:intron 40.0%
GCATCTCTGAATGATACAGA+CGG + tig0012609:10241-10260 Msa1352530:intergenic 40.0%
CTGTATCATTCAGAGATGCA+CGG - tig0012609:10242-10261 Msa1352530:intron 40.0%
GTTCCCATATCAGATGATGA+CGG - tig0012609:10349-10368 Msa1352530:intron 40.0%
ATACCAATTCACGGGAAAGA+CGG - tig0012609:10379-10398 Msa1352530:intron 40.0%
!! TTGCAGTGTTGATTCAACTG+AGG - tig0012609:10444-10463 Msa1352530:intron 40.0%
ATGGTTTGACAGAACTTGAC+TGG - tig0012609:10596-10615 Msa1352530:intron 40.0%
GGAACATCGTTGAAGGAAAT+AGG + tig0012609:10664-10683 Msa1352530:intergenic 40.0%
! AGTGCCTGTTGAAGTATCAA+AGG - tig0012609:10705-10724 Msa1352530:intron 40.0%
TGCATGGATTTGAAGGATAG+AGG - tig0012609:10773-10792 Msa1352530:CDS 40.0%
! AATGTTTTCTTCACGGTCCA+TGG + tig0012609:11082-11101 Msa1352530:intergenic 40.0%
TGACACGTATCAGTAGAAAC+CGG + tig0012609:11153-11172 Msa1352530:intergenic 40.0%
AAGCTAGCTGTCAGTAATAG+AGG - tig0012609:11210-11229 Msa1352530:CDS 40.0%
! AAACGAATCTGGTTTGTCTC+TGG - tig0012609:11461-11480 Msa1352530:CDS 40.0%
TGATATTGAAGGTGAAAGCC+CGG - tig0012609:11500-11519 Msa1352530:CDS 40.0%
! GTCTTTTAAGCTTGTCAACC+GGG + tig0012609:11521-11540 Msa1352530:intergenic 40.0%
TGCTTTGTATAAAGAGCTGG+AGG - tig0012609:11569-11588 Msa1352530:CDS 40.0%
! TAATGACCTACTTGCTGAGA+GGG - tig0012609:11746-11765 Msa1352530:CDS 40.0%
! TTTTTCTCCACCATGTTCTC+CGG + tig0012609:11840-11859 Msa1352530:intergenic 40.0%
! CCAACTTTTCCGAGTTTTCT+GGG + tig0012609:12160-12179 Msa1352530:intergenic 40.0%
! TCCAACTTTTCCGAGTTTTC+TGG + tig0012609:12161-12180 Msa1352530:intergenic 40.0%
GACGAAACCGAATCTTTCAT+TGG + tig0012609:12194-12213 Msa1352530:intergenic 40.0%
! TCACCATTTTGCTTGCAAAC+TGG + tig0012609:12269-12288 Msa1352530:intergenic 40.0%
TGAAAGGTTACAAGCTCTTG+AGG - tig0012609:12373-12392 Msa1352530:intron 40.0%
ACTATCAACTTACTGAGCGA+TGG - tig0012609:12419-12438 Msa1352530:intron 40.0%
! ATAGATCAACCTGTTGCTTG+AGG - tig0012609:12515-12534 Msa1352530:intron 40.0%
TCTGTGATCCAAGATAAGCA+AGG - tig0012609:12664-12683 Msa1352530:CDS 40.0%
CTGTGATCCAAGATAAGCAA+GGG - tig0012609:12665-12684 Msa1352530:CDS 40.0%
ATGTATCATTACAGGGAGGT+CGG + tig0012609:12806-12825 Msa1352530:intergenic 40.0%
TTAGTTGGTTGTCGGTATTG+CGG - tig0012609:12917-12936 Msa1352530:CDS 40.0%
CACTGAATCATACGTTCATC+TGG + tig0012609:12979-12998 Msa1352530:intergenic 40.0%
ATGAACGTATGATTCAGTGC+TGG - tig0012609:12980-12999 Msa1352530:CDS 40.0%
TGTGCATGCCACAAAATCAT+AGG - tig0012609:13202-13221 Msa1352530:CDS 40.0%
CATGTGGAATAACTGTCATG+AGG + tig0012609:13341-13360 Msa1352530:intergenic 40.0%
CTAGTCGGTAAATAGTCATG+TGG + tig0012609:13357-13376 Msa1352530:intergenic 40.0%
! TATACCAATGATTAGCCACC+AGG - tig0012609:13701-13720 Msa1352530:five_prime_UTR 40.0%
TGTTCAATGTACCTTCTTCC+TGG + tig0012609:13722-13741 Msa1352530:intergenic 40.0%
TACATTGAACAACGGTGAAC+CGG - tig0012609:13731-13750 Msa1352530:intron 40.0%
!!! TTTCGCCCTTCCTTTTTTTG+GGG - tig0012609:13846-13865 Msa1352530:intron 40.0%
CAAATGCAGCAAAATGTCCA+AGG + tig0012609:13879-13898 Msa1352530:intergenic 40.0%
! GGCATTGGATTTATCGACGA+CGG + tig0012609:9972-9991 Msa1352530:intergenic 45.0%
CGATTTACCAAGCAATAGCC+GGG + tig0012609:10002-10021 Msa1352530:intergenic 45.0%
CCGATTTACCAAGCAATAGC+CGG + tig0012609:10003-10022 Msa1352530:intergenic 45.0%
CCGGCTATTGCTTGGTAAAT+CGG - tig0012609:10000-10019 Msa1352530:intron 45.0%
CGGCTATTGCTTGGTAAATC+GGG - tig0012609:10001-10020 Msa1352530:intron 45.0%
CTTGGTCAACATACAGTTGC+CGG - tig0012609:10070-10089 Msa1352530:intron 45.0%
TTGCCAAGTCAATTCGGTCT+AGG - tig0012609:10152-10171 Msa1352530:intron 45.0%
TGCCAAGTCAATTCGGTCTA+GGG - tig0012609:10153-10172 Msa1352530:intron 45.0%
ACGGCTGAGAAATGATCATG+CGG - tig0012609:10261-10280 Msa1352530:intron 45.0%
TGAGTTCTGTGTAGCCTACA+CGG + tig0012609:10297-10316 Msa1352530:intergenic 45.0%
AAGTACAGAAGCTGAAGTCC+CGG + tig0012609:10488-10507 Msa1352530:intergenic 45.0%
!! ACTCGTGGTTCTGACAACAA+TGG + tig0012609:10514-10533 Msa1352530:intergenic 45.0%
TAAAACCGCAGAAGCAACAG+TGG - tig0012609:10564-10583 Msa1352530:intron 45.0%
! ACTTTCCACTGTTGCTTCTG+CGG + tig0012609:10572-10591 Msa1352530:intergenic 45.0%
GCAACAGTGGAAAGTGGAAA+TGG - tig0012609:10577-10596 Msa1352530:intron 45.0%
TGAAGGAAATAGGCTCGCTT+GGG + tig0012609:10654-10673 Msa1352530:intergenic 45.0%
TTGAAGGAAATAGGCTCGCT+TGG + tig0012609:10655-10674 Msa1352530:intergenic 45.0%
! AACAGGTTTAGAACCAACCC+CGG - tig0012609:11131-11150 Msa1352530:CDS 45.0%
ACACGTATCAGTAGAAACCG+GGG + tig0012609:11151-11170 Msa1352530:intergenic 45.0%
GACACGTATCAGTAGAAACC+GGG + tig0012609:11152-11171 Msa1352530:intergenic 45.0%
! ATGCTTGCAGAACATTGGCT+TGG - tig0012609:11249-11268 Msa1352530:CDS 45.0%
!! TGCTTGCAGAACATTGGCTT+GGG - tig0012609:11250-11269 Msa1352530:CDS 45.0%
TCGCTTGAGAGAAACGAATC+TGG - tig0012609:11450-11469 Msa1352530:CDS 45.0%
! GAATCTGGTTTGTCTCTGGA+TGG - tig0012609:11465-11484 Msa1352530:CDS 45.0%
TTCCTGCAGTCTAGTGATCA+TGG + tig0012609:11637-11656 Msa1352530:intergenic 45.0%
CACTAGACTGCAGGAAGAAA+AGG - tig0012609:11641-11660 Msa1352530:CDS 45.0%
! CATCATCCTTAAGTGCTGCA+AGG + tig0012609:11685-11704 Msa1352530:intergenic 45.0%
CTTGCAGCACTTAAGGATGA+TGG - tig0012609:11683-11702 Msa1352530:CDS 45.0%
! CTAATGACCTACTTGCTGAG+AGG - tig0012609:11745-11764 Msa1352530:CDS 45.0%
ATTCCCTGACGAATCAAAGC+CGG - tig0012609:11818-11837 Msa1352530:CDS 45.0%
CTCACCAGTCTCAGGATAAT+TGG - tig0012609:12105-12124 Msa1352530:CDS 45.0%
TAGGCCAATTATCCTGAGAC+TGG + tig0012609:12112-12131 Msa1352530:intergenic 45.0%
CCCAGAAAACTCGGAAAAGT+TGG - tig0012609:12157-12176 Msa1352530:CDS 45.0%
ACTGGAGGTTTCTTGGATGA+CGG + tig0012609:12251-12270 Msa1352530:intergenic 45.0%
CTTGCAAACTGGAGGTTTCT+TGG + tig0012609:12258-12277 Msa1352530:intergenic 45.0%
! CCATTTTGCTTGCAAACTGG+AGG + tig0012609:12266-12285 Msa1352530:intergenic 45.0%
CCTCCAGTTTGCAAGCAAAA+TGG - tig0012609:12263-12282 Msa1352530:intron 45.0%
CATGACTCCTCTGTTCTATG+TGG - tig0012609:12305-12324 Msa1352530:intron 45.0%
ATCAACTTACTGAGCGATGG+AGG - tig0012609:12422-12441 Msa1352530:intron 45.0%
CTGCAACAATTACGCAGGAT+CGG - tig0012609:12482-12501 Msa1352530:intron 45.0%
TGCAACAATTACGCAGGATC+GGG - tig0012609:12483-12502 Msa1352530:intron 45.0%
GTCCATGTCGAGATAACATG+CGG - tig0012609:12863-12882 Msa1352530:CDS 45.0%
AACCGCATGTTATCTCGACA+TGG + tig0012609:12868-12887 Msa1352530:intergenic 45.0%
ATGTCGAGATAACATGCGGT+TGG - tig0012609:12867-12886 Msa1352530:CDS 45.0%
AACTCTAACTACTGCACAGG+TGG + tig0012609:13487-13506 Msa1352530:intergenic 45.0%
TCTTCCTGGTGGCTAATCAT+TGG + tig0012609:13708-13727 Msa1352530:intergenic 45.0%
! ATGATTAGCCACCAGGAAGA+AGG - tig0012609:13708-13727 Msa1352530:five_prime_UTR 45.0%
TCAATGTACCTTCTTCCTGG+TGG + tig0012609:13719-13738 Msa1352530:intergenic 45.0%
ACATTGAACAACGGTGAACC+GGG - tig0012609:13732-13751 Msa1352530:intron 45.0%
TGTACAGTTGCAACCAGTCA+TGG + tig0012609:13762-13781 Msa1352530:intergenic 45.0%
AATCCAATGCCGAGACTTCC+CGG - tig0012609:9981-10000 Msa1352530:intron 50.0%
AAGCAATAGCCGGGAAGTCT+CGG + tig0012609:9993-10012 Msa1352530:intergenic 50.0%
AGCCCTAGACCGAATTGACT+TGG + tig0012609:10158-10177 Msa1352530:intergenic 50.0%
GAGTTCTGTGTAGCCTACAC+GGG + tig0012609:10296-10315 Msa1352530:intergenic 50.0%
GTACCGTCTTTCCCGTGAAT+TGG + tig0012609:10385-10404 Msa1352530:intergenic 50.0%
AGTACAGAAGCTGAAGTCCC+GGG + tig0012609:10487-10506 Msa1352530:intergenic 50.0%
GCAGAAGCAACAGTGGAAAG+TGG - tig0012609:10571-10590 Msa1352530:intron 50.0%
GAAGGAAATAGGCTCGCTTG+GGG + tig0012609:10653-10672 Msa1352530:intergenic 50.0%
! TTTTCTTCACGGTCCATGGC+GGG + tig0012609:11078-11097 Msa1352530:intergenic 50.0%
! GTTTTCTTCACGGTCCATGG+CGG + tig0012609:11079-11098 Msa1352530:intergenic 50.0%
GTATCAGTAGAAACCGGGGT+TGG + tig0012609:11147-11166 Msa1352530:intergenic 50.0%
CTGGCATGCTTGCAGAACAT+TGG - tig0012609:11244-11263 Msa1352530:CDS 50.0%
AGACATATCAGTCCCTCGAG+TGG + tig0012609:11331-11350 Msa1352530:intergenic 50.0%
AGCCATGATCACTAGACTGC+AGG - tig0012609:11632-11651 Msa1352530:CDS 50.0%
TGGAAGCCTTGCAGCACTTA+AGG - tig0012609:11676-11695 Msa1352530:CDS 50.0%
! TCTCCGGCTTTGATTCGTCA+GGG + tig0012609:11824-11843 Msa1352530:intergenic 50.0%
! TTCTCCGGCTTTGATTCGTC+AGG + tig0012609:11825-11844 Msa1352530:intergenic 50.0%
CGAATCAAAGCCGGAGAACA+TGG - tig0012609:11827-11846 Msa1352530:CDS 50.0%
ATCAAAGCCGGAGAACATGG+TGG - tig0012609:11830-11849 Msa1352530:CDS 50.0%
CCTGAGACTGGTGAGAATTC+AGG + tig0012609:12100-12119 Msa1352530:intergenic 50.0%
CCTGAATTCTCACCAGTCTC+AGG - tig0012609:12097-12116 Msa1352530:CDS 50.0%
CTGGAGGTTTCTTGGATGAC+GGG + tig0012609:12250-12269 Msa1352530:intergenic 50.0%
TTACTGAGCGATGGAGGTGA+AGG - tig0012609:12428-12447 Msa1352530:intron 50.0%
ATCGCCTGCAACAATTACGC+AGG - tig0012609:12477-12496 Msa1352530:intron 50.0%
CGATCCTGCGTAATTGTTGC+AGG + tig0012609:12484-12503 Msa1352530:intergenic 50.0%
TGAACCGGGTAAACCATGAC+TGG - tig0012609:13746-13765 Msa1352530:intron 50.0%
GCAACCAGTCATGGTTTACC+CGG + tig0012609:13753-13772 Msa1352530:intergenic 50.0%
GAGACTTCCCGGCTATTGCT+TGG - tig0012609:9992-10011 Msa1352530:intron 55.0%
GTGTAGCCTACACGGGACAA+AGG + tig0012609:10289-10308 Msa1352530:intergenic 55.0%
TCACGGGAAAGACGGTACCA+AGG - tig0012609:10387-10406 Msa1352530:intron 55.0%
GATCTGACTTCCACGAAGCC+CGG - tig0012609:10466-10485 Msa1352530:intron 55.0%
ATCTGACTTCCACGAAGCCC+GGG - tig0012609:10467-10486 Msa1352530:intron 55.0%
GAAATAGGCTCGCTTGGGGA+CGG + tig0012609:10649-10668 Msa1352530:intergenic 55.0%
TCACAATTCTCGGCCACTCG+AGG - tig0012609:11315-11334 Msa1352530:CDS 55.0%
CACAATTCTCGGCCACTCGA+GGG - tig0012609:11316-11335 Msa1352530:CDS 55.0%
CCTTCTCCCTCTCAGCAAGT+AGG + tig0012609:11755-11774 Msa1352530:intergenic 55.0%
! CCTACTTGCTGAGAGGGAGA+AGG - tig0012609:11752-11771 Msa1352530:CDS 55.0%
!! GGATGACGGGTCATCAACCA+TGG + tig0012609:12237-12256 Msa1352530:intergenic 55.0%
GGTAGCAAGCGTGAAACAGC+AGG - tig0012609:13145-13164 Msa1352530:CDS 55.0%
TAGCCGGGAAGTCTCGGCAT+TGG + tig0012609:9987-10006 Msa1352530:intergenic 60.0%
GCGGATCCTTTGTCCCGTGT+AGG - tig0012609:10280-10299 Msa1352530:intron 60.0%
ATCTGAGCGAAGACCCGCCA+TGG - tig0012609:11062-11081 Msa1352530:CDS 60.0%
AGCTGAAGTCCCGGGCTTCG+TGG + tig0012609:10479-10498 Msa1352530:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0012609 gene 9189 14086 9189 ID=Msa1352530;Name=Msa1352530
tig0012609 mRNA 9189 14086 9189 ID=Msa1352530-mRNA-1;Parent=Msa1352530;Name=Msa1352530-mRNA-1;_AED=0.04;_eAED=0.04;_QI=280|1|1|1|0.33|0.25|4|404|873
tig0012609 exon 9189 9579 9189 ID=Msa1352530-mRNA-1:exon:8203;Parent=Msa1352530-mRNA-1
tig0012609 exon 10727 12244 10727 ID=Msa1352530-mRNA-1:exon:8202;Parent=Msa1352530-mRNA-1
tig0012609 exon 12542 13747 12542 ID=Msa1352530-mRNA-1:exon:8201;Parent=Msa1352530-mRNA-1
tig0012609 exon 13896 14086 13896 ID=Msa1352530-mRNA-1:exon:8200;Parent=Msa1352530-mRNA-1
tig0012609 five_prime_UTR 13896 14086 13896 ID=Msa1352530-mRNA-1:five_prime_utr;Parent=Msa1352530-mRNA-1
tig0012609 five_prime_UTR 13659 13747 13659 ID=Msa1352530-mRNA-1:five_prime_utr;Parent=Msa1352530-mRNA-1
tig0012609 CDS 12542 13658 12542 ID=Msa1352530-mRNA-1:cds;Parent=Msa1352530-mRNA-1
tig0012609 CDS 10740 12244 10740 ID=Msa1352530-mRNA-1:cds;Parent=Msa1352530-mRNA-1
tig0012609 three_prime_UTR 10727 10739 10727 ID=Msa1352530-mRNA-1:three_prime_utr;Parent=Msa1352530-mRNA-1
tig0012609 three_prime_UTR 9189 9579 9189 ID=Msa1352530-mRNA-1:three_prime_utr;Parent=Msa1352530-mRNA-1
Gene Sequence

>Msa1352530

ATGGCTACTGCCAATGAAGTTTCATCTTCTTCTAGGTGGCAAAATTTCTACAAAAGAATTACAACATCATTGGCTTCAGCTTTACTTGAATGGTTATTGATCATTTTCTTATTTGTTAGTGCTATTTTCTCTTATGTTATTACTAAATTTGCTAATTACTGCAAATTGAAAACACCATGCTTGTTTTGTTCAAGGCTTGATCATGTTTTAGGCAAACAGAAAAGAGGTTATTATTTGGATTTGATTTGTAGTCTTCATAAGTCTGAAATTTCTGAATTAGTTTTTTGTCGCGCACACGATAAGCTTGTAAATATTCAAGGAGTTTGTGAAACTTGTGTCTTGTCTTCTGCAACCGTCGTCGATAAATCCAATGCCGAGACTTCCCGGCTATTGCTTGGTAAATCGGGTGAAGAAGAAGAAGAATCTGGATCTGTATTTGATCATGATCCATTACTTGGTCAACATACAGTTGCCGGACACTGTTCTTGTTGTAGTGAGAAATTCCGGTTAGATGGTCATGATCAAAGTCTGGTATTTGCCAAGTCAATTCGGTCTAGGGCTGTTGATTTCAATGATTCAGGTGTTGTTGGAAATGATTTTTATGAGAAAAGAAGTGCGAAGCCGTCTGTATCATTCAGAGATGCACGGCTGAGAAATGATCATGCGGATCCTTTGTCCCGTGTAGGCTACACAGAACTCAACATTACTTCTGATACTGAGTCTGAATTTGAGGTTCCCATATCAGATGATGACGGTATAAGTATACCAATTCACGGGAAAGACGGTACCAAGGAAGATATAAGAGTTCCATGTGAATATATGGAGCTTTGCAGTGTTGATTCAACTGAGGATCTGACTTCCACGAAGCCCGGGACTTCAGCTTCTGTACTTGAGCCATTGTTGTCAGAACCACGAGTACAAGTAGAAAACAAAGACATTTGTGCTATTAAAACCGCAGAAGCAACAGTGGAAAGTGGAAATGGTTTGACAGAACTTGACTGGCAGCAGATTGAAAGAAGTGATGTTTGTCCGTCCCCAAGCGAGCCTATTTCCTTCAACGATGTTCCTACATTATCAAATATAACAGAAGTGCCTGTTGAAGTATCAAAGGAAAAGCATGATTTTAGAACTGACAAAGAGGAGCTAACATCTGAGCGAAGACCCGCCATGGACCGTGAAGAAAACATTAAGTCAGGCAATAGGCTAATAACATCTGAAACAGGTTTAGAACCAACCCCGGTTTCTACTGATACGTGTCAGCAAAATCCTAATTTGCTAGATCTTGGTGATGCTTATAAGCTAGCTGTCAGTAATAGAGGAAGACAATTGTCTGGCATGCTTGCAGAACATTGGCTTGGGAAAGATTCCTCAAGAGTTAATGAAGATCTAAAGATATTGCTGTCACAATTCTCGGCCACTCGAGGGACTGATATGTCTTTTAATGATATCAGTCCCAGATTGTCTATGAATAGTGAAGAAGCAAAGAGTTCTGATGTTACTAACTCTACTGGAATGCAGATACTTCAAAAAATGATTTCGCTTGAGAGAAACGAATCTGGTTTGTCTCTGGATGGAAGCATTGTCAGTGATATTGAAGGTGAAAGCCCGGTTGACAAGCTTAAAAGACAAGTTGATCATGACAGGAAACTTATGAATGCTTTGTATAAAGAGCTGGAGGAAGAGAGAAACGCTTCTGCAATTGCTGCAAGTCAAGCTTTAGCCATGATCACTAGACTGCAGGAAGAAAAGGCAACGTTACATATGGAAGCCTTGCAGCACTTAAGGATGATGGATGAGCAGTCAGAATATGAATTGGAAGCATTGCAAAAAGCTAATGACCTACTTGCTGAGAGGGAGAAGGAGTTAGAAGACTTAGAAGCAAAGGTTGAGTTTTATAGGAAGAAATTCCCTGACGAATCAAAGCCGGAGAACATGGTGGAGAAAAACTCTGAAATGAAGGTAAAAGATATTGGATTGGATCTTTCACAATGCACTTTCATTGAAAATGATGAAAGTGGCCCCCGAAAATCAAATCCTAATATCTATGACAAAGCTGACATTCAACTCATGTCTTCGGAAGAAAAGAATATTCAATCTGCACAAAGTTTACAAATGGAGTTTCAAGATGAAAAGTTATATATTTCTGAACGTTTGAAGAAATTGGAGAGGCAAGTATACTTTTTCCTGAATTCTCACCAGTCTCAGGATAATTGGCCTAATTCTGAAAATGTTGTAAAGGAATACCCAGAAAACTCGGAAAAGTTGGACAAAAATATTCCAATGAAAGATTCGGTTTCGTCATTCAAATTAAATTCAGATGCCATGGTTGATGACCCGTCATCCAAGAAACCTCCAGTTTGCAAGCAAAATGGTGAACTTGAATACTCTGGACATGACTCCTCTGTTCTATGTGGAGATAATGATTTAGCTTCTACTGGAAGTTTGGTTTCAGATTTTATTGAAAGGTTACAAGCTCTTGAGGCAGACCATAGTTTCCTTGAGCATACTATCAACTTACTGAGCGATGGAGGTGAAGGACTTAAGTTATTGCAGGAAATAGCTGATCGCCTGCAACAATTACGCAGGATCGGGATAAGAGAAATAGATCAACCTGTTGCTTGA

Protein sequence

>Msa1352530

MATANEVSSSSRWQNFYKRITTSLASALLEWLLIIFLFVSAIFSYVITKFANYCKLKTPCLFCSRLDHVLGKQKRGYYLDLICSLHKSEISELVFCRAHDKLVNIQGVCETCVLSSATVVDKSNAETSRLLLGKSGEEEEESGSVFDHDPLLGQHTVAGHCSCCSEKFRLDGHDQSLVFAKSIRSRAVDFNDSGVVGNDFYEKRSAKPSVSFRDARLRNDHADPLSRVGYTELNITSDTESEFEVPISDDDGISIPIHGKDGTKEDIRVPCEYMELCSVDSTEDLTSTKPGTSASVLEPLLSEPRVQVENKDICAIKTAEATVESGNGLTELDWQQIERSDVCPSPSEPISFNDVPTLSNITEVPVEVSKEKHDFRTDKEELTSERRPAMDREENIKSGNRLITSETGLEPTPVSTDTCQQNPNLLDLGDAYKLAVSNRGRQLSGMLAEHWLGKDSSRVNEDLKILLSQFSATRGTDMSFNDISPRLSMNSEEAKSSDVTNSTGMQILQKMISLERNESGLSLDGSIVSDIEGESPVDKLKRQVDHDRKLMNALYKELEEERNASAIAASQALAMITRLQEEKATLHMEALQHLRMMDEQSEYELEALQKANDLLAEREKELEDLEAKVEFYRKKFPDESKPENMVEKNSEMKVKDIGLDLSQCTFIENDESGPRKSNPNIYDKADIQLMSSEEKNIQSAQSLQMEFQDEKLYISERLKKLERQVYFFLNSHQSQDNWPNSENVVKEYPENSEKLDKNIPMKDSVSSFKLNSDAMVDDPSSKKPPVCKQNGELEYSGHDSSVLCGDNDLASTGSLVSDFIERLQALEADHSFLEHTINLLSDGGEGLKLLQEIADRLQQLRRIGIREIDQPVA*