Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0539530 | XP_003605537.1 | 73.050 | 282 | 6 | 3 | 1 | 282 | 1 | 212 | 4.42e-132 | 383 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0539530 | G7JP67 | 73.050 | 282 | 6 | 3 | 1 | 282 | 1 | 212 | 2.11e-132 | 383 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011660 | Msa0539530 | 0.855684 | 5.349146e-62 | -8.615850e-47 |
| Msa0017510 | Msa0539530 | -0.812903 | 3.353840e-51 | -8.615850e-47 |
| Msa0024210 | Msa0539530 | 0.808559 | 2.918604e-50 | -8.615850e-47 |
| Msa0036130 | Msa0539530 | -0.803085 | 4.124176e-49 | -8.615850e-47 |
| Msa0050390 | Msa0539530 | -0.804760 | 1.850915e-49 | -8.615850e-47 |
| Msa0071380 | Msa0539530 | 0.812374 | 4.378958e-51 | -8.615850e-47 |
| Msa0090570 | Msa0539530 | -0.801612 | 8.295617e-49 | -8.615850e-47 |
| Msa0097810 | Msa0539530 | -0.808127 | 3.607688e-50 | -8.615850e-47 |
| Msa0097840 | Msa0539530 | -0.834215 | 3.409013e-56 | -8.615850e-47 |
| Msa0120020 | Msa0539530 | 0.802700 | 4.954396e-49 | -8.615850e-47 |
| Msa0127800 | Msa0539530 | -0.809325 | 2.000404e-50 | -8.615850e-47 |
| Msa0157290 | Msa0539530 | -0.813742 | 2.194781e-51 | -8.615850e-47 |
| Msa0170230 | Msa0539530 | -0.825342 | 4.938489e-54 | -8.615850e-47 |
| Msa0194410 | Msa0539530 | -0.808834 | 2.549357e-50 | -8.615850e-47 |
| Msa0215320 | Msa0539530 | 0.839035 | 2.015585e-57 | -8.615850e-47 |
| Msa0224330 | Msa0539530 | -0.818158 | 2.267975e-52 | -8.615850e-47 |
| Msa0226890 | Msa0539530 | -0.803372 | 3.596942e-49 | -8.615850e-47 |
| Msa0395790 | Msa0539530 | -0.800546 | 1.369674e-48 | -8.615850e-47 |
| Msa0395820 | Msa0539530 | -0.804130 | 2.503385e-49 | -8.615850e-47 |
| Msa0402790 | Msa0539530 | -0.806377 | 8.471483e-50 | -8.615850e-47 |
| Msa0405370 | Msa0539530 | -0.808789 | 2.605904e-50 | -8.615850e-47 |
| Msa0245650 | Msa0539530 | -0.803894 | 2.802885e-49 | -8.615850e-47 |
| Msa0276630 | Msa0539530 | -0.818325 | 2.078685e-52 | -8.615850e-47 |
| Msa0288080 | Msa0539530 | -0.805501 | 1.295009e-49 | -8.615850e-47 |
| Msa0294560 | Msa0539530 | 0.835674 | 1.462807e-56 | -8.615850e-47 |
| Msa0321310 | Msa0539530 | -0.804407 | 2.192450e-49 | -8.615850e-47 |
| Msa0326480 | Msa0539530 | -0.800581 | 1.347439e-48 | -8.615850e-47 |
| Msa0353540 | Msa0539530 | -0.808008 | 3.825414e-50 | -8.615850e-47 |
| Msa0359030 | Msa0539530 | -0.803210 | 3.885530e-49 | -8.615850e-47 |
| Msa0512750 | Msa0539530 | -0.803039 | 4.215615e-49 | -8.615850e-47 |
| Msa0523940 | Msa0539530 | -0.822971 | 1.780419e-53 | -8.615850e-47 |
| Msa0529040 | Msa0539530 | -0.802784 | 4.758934e-49 | -8.615850e-47 |
| Msa0539530 | Msa0592440 | -0.800716 | 1.265128e-48 | -8.615850e-47 |
| Msa0539530 | Msa0594660 | -0.810643 | 1.041068e-50 | -8.615850e-47 |
| Msa0539530 | Msa0663920 | -0.806068 | 9.844920e-50 | -8.615850e-47 |
| Msa0539530 | Msa0669520 | -0.807896 | 4.039681e-50 | -8.615850e-47 |
| Msa0539530 | Msa0757450 | 0.824124 | 9.564545e-54 | -8.615850e-47 |
| Msa0539530 | Msa0757500 | 0.815362 | 9.609752e-52 | -8.615850e-47 |
| Msa0539530 | Msa0763020 | -0.801157 | 1.028128e-48 | -8.615850e-47 |
| Msa0539530 | Msa0777570 | 0.815323 | 9.803782e-52 | -8.615850e-47 |
| Msa0539530 | Msa0844410 | -0.820791 | 5.692303e-53 | -8.615850e-47 |
| Msa0539530 | Msa0844470 | -0.823263 | 1.521791e-53 | -8.615850e-47 |
| Msa0539530 | Msa0844490 | -0.805141 | 1.540566e-49 | -8.615850e-47 |
| Msa0539530 | Msa0849030 | -0.812288 | 4.571524e-51 | -8.615850e-47 |
| Msa0539530 | Msa0849100 | -0.822103 | 2.833222e-53 | -8.615850e-47 |
| Msa0539530 | Msa0880140 | -0.808591 | 2.872809e-50 | -8.615850e-47 |
| Msa0539530 | Msa0933100 | -0.800634 | 1.314368e-48 | -8.615850e-47 |
| Msa0539530 | Msa0936300 | -0.801088 | 1.061681e-48 | -8.615850e-47 |
| Msa0539530 | Msa0969520 | -0.804853 | 1.769275e-49 | -8.615850e-47 |
| Msa0539530 | Msa0973100 | -0.819474 | 1.139471e-52 | -8.615850e-47 |
| Msa0539530 | Msa0978490 | -0.807393 | 5.168149e-50 | -8.615850e-47 |
| Msa0539530 | Msa1000860 | -0.806062 | 9.871249e-50 | -8.615850e-47 |
| Msa0539530 | Msa1000900 | -0.802232 | 6.185878e-49 | -8.615850e-47 |
| Msa0539530 | Msa1075540 | -0.802208 | 6.256744e-49 | -8.615850e-47 |
| Msa0539530 | Msa1137570 | -0.845525 | 3.846469e-59 | -8.615850e-47 |
| Msa0539530 | Msa1154030 | -0.805374 | 1.376507e-49 | -8.615850e-47 |
| Msa0539530 | Msa1190930 | -0.803559 | 3.290376e-49 | -8.615850e-47 |
| Msa0539530 | Msa1211140 | 0.809481 | 1.852662e-50 | -8.615850e-47 |
| Msa0539530 | Msa1232740 | -0.803061 | 4.171953e-49 | -8.615850e-47 |
| Msa0539530 | Msa1253020 | -0.800271 | 1.558553e-48 | -8.615850e-47 |
| Msa0539530 | Msa1254250 | 0.836744 | 7.819444e-57 | -8.615850e-47 |
| Msa0539530 | Msa1284680 | -0.815359 | 9.628104e-52 | -8.615850e-47 |
| Msa0539530 | Msa1286800 | -0.837404 | 5.302900e-57 | -8.615850e-47 |
| Msa0539530 | Msa1287190 | -0.833561 | 4.967788e-56 | -8.615850e-47 |
| Msa0539530 | Msa1299290 | 0.803183 | 3.935943e-49 | -8.615850e-47 |
| Msa0539530 | Msa1313320 | -0.807740 | 4.361545e-50 | -8.615850e-47 |
| Msa0539530 | Msa1332040 | 0.804862 | 1.761754e-49 | -8.615850e-47 |
| Msa0539530 | Msa1366970 | -0.801742 | 7.799926e-49 | -8.615850e-47 |
| Msa0539530 | Msa1411700 | -0.811776 | 5.911976e-51 | -8.615850e-47 |
| Msa0539530 | Msa1460320 | 0.800049 | 1.729661e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0539530 | MtrunA17_Chr4g0014381 | 71.986 | 282 | 6 | 4 | 1 | 282 | 1 | 209 | 6.20e-132 | 372 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0539530 | AT3G51100.1 | 38.776 | 245 | 85 | 7 | 42 | 282 | 28 | 211 | 4.63e-40 | 139 |
| Msa0539530 | AT3G51100.2 | 38.764 | 178 | 58 | 3 | 42 | 218 | 28 | 155 | 9.87e-30 | 110 |
| Msa0539530 | AT3G51100.3 | 41.026 | 156 | 74 | 6 | 131 | 282 | 60 | 201 | 5.73e-25 | 99.4 |
Find 74 sgRNAs with CRISPR-Local
Find 355 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGTTCTGGTGTGGCAGGTC+TGG | 0.183254 | 4_1:+20495344 | Msa0539530:CDS |
| TTTGAATCTGGAATTGAATT+AGG | 0.200743 | 4_1:-20492499 | None:intergenic |
| CAGCACTTAGACAGGAAATT+TGG | 0.220994 | 4_1:+20495288 | Msa0539530:intron |
| AATTCTTCTGCTGAAGTAAT+TGG | 0.236952 | 4_1:-20497395 | None:intergenic |
| TGTTAGTAGTGTTTCTGTTC+TGG | 0.283814 | 4_1:+20495330 | Msa0539530:CDS |
| GTTAGGATTTGAATCAGAAT+TGG | 0.316356 | 4_1:-20492524 | None:intergenic |
| AATTTCAAGTATGCTTGTAT+TGG | 0.334277 | 4_1:+20496080 | Msa0539530:CDS |
| TTCACTGTTCTAGGACGATT+AGG | 0.336571 | 4_1:-20492553 | None:intergenic |
| ATTTCAAGTATGCTTGTATT+GGG | 0.340491 | 4_1:+20496081 | Msa0539530:CDS |
| GGAGCTTGTTGTTGTTCTCT+TGG | 0.345747 | 4_1:-20492460 | None:intergenic |
| TGGTTTGTCCAGAACGCTTC+AGG | 0.352171 | 4_1:+20492648 | Msa0539530:CDS |
| TGTTCTGGTGTGGCAGGTCT+GGG | 0.354745 | 4_1:+20495345 | Msa0539530:CDS |
| GATACCTTCCTGAAGCGTTC+TGG | 0.359129 | 4_1:-20492656 | None:intergenic |
| GTTCTAGGACGATTAGGGTT+AGG | 0.361130 | 4_1:-20492547 | None:intergenic |
| TCACTTTCTCCCACGACATA+TGG | 0.362448 | 4_1:-20496023 | None:intergenic |
| TCAGAATTGGGATTTGAATC+TGG | 0.372529 | 4_1:-20492511 | None:intergenic |
| GGAAATTTGGATGTCGGTAT+TGG | 0.376013 | 4_1:+20495301 | Msa0539530:intron |
| TCACTGTTCTAGGACGATTA+GGG | 0.386157 | 4_1:-20492552 | None:intergenic |
| TTAGGATTTGAATCAGAATT+GGG | 0.389664 | 4_1:-20492523 | None:intergenic |
| TGTTTCTGTTCTGGTGTGGC+AGG | 0.393599 | 4_1:+20495339 | Msa0539530:CDS |
| TTCTAGGACGATTAGGGTTA+GGG | 0.393997 | 4_1:-20492546 | None:intergenic |
| GTTTACTGATACGTGGTTGA+TGG | 0.404973 | 4_1:-20497370 | None:intergenic |
| GCGTTGGACTTGAGGTTTCA+AGG | 0.414155 | 4_1:+20496174 | Msa0539530:CDS |
| ACTTGAAATTTGCAAGTTTG+CGG | 0.421119 | 4_1:-20496067 | None:intergenic |
| TGAGCAGGAACTTGGCCAAC+AGG | 0.421194 | 4_1:-20496522 | None:intergenic |
| TTGTAATGACCAGCTTTACT+TGG | 0.421399 | 4_1:-20497629 | None:intergenic |
| CACTTTCTCCCACGACATAT+GGG | 0.421976 | 4_1:-20496022 | None:intergenic |
| CAGCAGAAGAATTCTTAAAC+AGG | 0.425899 | 4_1:+20497405 | Msa0539530:CDS |
| GGACGATTAGGGTTAGGGTT+AGG | 0.435815 | 4_1:-20492541 | None:intergenic |
| CCCTAGATGACATTCTATAT+CGG | 0.437781 | 4_1:+20497602 | Msa0539530:CDS |
| GACGAGCATGAGCAGGAACT+TGG | 0.441342 | 4_1:-20496530 | None:intergenic |
| AACCTCAAGTCCAACGCAAA+AGG | 0.449682 | 4_1:-20496168 | None:intergenic |
| AGTGAAAGGAAAATCGTGTA+AGG | 0.470464 | 4_1:+20492570 | Msa0539530:CDS |
| AATTTAAATTATTTCTTGCA+AGG | 0.476923 | 4_1:-20497655 | None:intergenic |
| CTGATACGTGGTTGATGGGC+TGG | 0.477247 | 4_1:-20497365 | None:intergenic |
| TTAGGATTTCGTTCAGATGT+TGG | 0.482991 | 4_1:-20492481 | None:intergenic |
| TCCGATATAGAATGTCATCT+AGG | 0.484248 | 4_1:-20497603 | None:intergenic |
| CGTTGGACTTGAGGTTTCAA+GGG | 0.485641 | 4_1:+20496175 | Msa0539530:CDS |
| TCTTCTGCTGAAGTAATTGG+AGG | 0.497178 | 4_1:-20497392 | None:intergenic |
| GAAGAGAAAATCGAAACTCA+TGG | 0.503288 | 4_1:+20492432 | Msa0539530:exon |
| TGGCCAACAGGTGAAGTAGA+AGG | 0.503456 | 4_1:-20496510 | None:intergenic |
| GTTGATGGGCTGGATGTTCA+CGG | 0.515275 | 4_1:-20497355 | None:intergenic |
| TACTACAATGTGTTTATGAA+AGG | 0.518622 | 4_1:-20497461 | None:intergenic |
| AATTTGGATGTCGGTATTGG+TGG | 0.521917 | 4_1:+20495304 | Msa0539530:CDS |
| ACCTCAAGTCCAACGCAAAA+GGG | 0.522246 | 4_1:-20496167 | None:intergenic |
| ATCGGAGACCCAAGTAAAGC+TGG | 0.534297 | 4_1:+20497620 | Msa0539530:exon |
| AGATTCTTCACCTGACTCAC+AGG | 0.534637 | 4_1:+20496127 | Msa0539530:CDS |
| TTACAACACCGTATGCCACT+AGG | 0.545306 | 4_1:-20497543 | None:intergenic |
| AATCCTTCTACTTCACCTGT+TGG | 0.545766 | 4_1:+20496507 | Msa0539530:CDS |
| TTTACTGATACGTGGTTGAT+GGG | 0.546008 | 4_1:-20497369 | None:intergenic |
| TGTAATGACCAGCTTTACTT+GGG | 0.546044 | 4_1:-20497628 | None:intergenic |
| CCGATATAGAATGTCATCTA+GGG | 0.546585 | 4_1:-20497602 | None:intergenic |
| TTAGTTTGACGAGCATGAGC+AGG | 0.548613 | 4_1:-20496537 | None:intergenic |
| CACACGCCCAAAATCCCAGC+TGG | 0.560129 | 4_1:-20495396 | None:intergenic |
| GCACATGTTTCAGGTAGTCT+CGG | 0.560237 | 4_1:+20496479 | Msa0539530:intron |
| TAGACAGGAAATTTGGATGT+CGG | 0.571813 | 4_1:+20495295 | Msa0539530:intron |
| AATCGTCCTAGAACAGTGAA+AGG | 0.578784 | 4_1:+20492556 | Msa0539530:CDS |
| TGAGTTGGAAGCTTCTAAAG+AGG | 0.581787 | 4_1:+20496043 | Msa0539530:CDS |
| TACAACACCGTATGCCACTA+GGG | 0.583864 | 4_1:-20497542 | None:intergenic |
| ACTTTCTCCCACGACATATG+GGG | 0.584435 | 4_1:-20496021 | None:intergenic |
| TAGACAAAACGCAACAATGA+GGG | 0.586022 | 4_1:-20492387 | None:intergenic |
| AATGCTACCCTAGTGGCATA+CGG | 0.592950 | 4_1:+20497535 | Msa0539530:CDS |
| GTGAAAGGAAAATCGTGTAA+GGG | 0.601040 | 4_1:+20492571 | Msa0539530:CDS |
| GCTCATGCTCGTCAAACTAA+CGG | 0.602570 | 4_1:+20496540 | Msa0539530:CDS |
| CTGGACAAACCATAACAAGT+AGG | 0.612196 | 4_1:-20492637 | None:intergenic |
| GTAGTGTTTCTGTTCTGGTG+TGG | 0.621819 | 4_1:+20495335 | Msa0539530:CDS |
| TGTCGTGGGAGAAAGTGAGT+TGG | 0.626038 | 4_1:+20496028 | Msa0539530:CDS |
| TTGTCCAGAACGCTTCAGGA+AGG | 0.626671 | 4_1:+20492652 | Msa0539530:CDS |
| GAGTTGGAAGCTTCTAAAGA+GGG | 0.627904 | 4_1:+20496044 | Msa0539530:CDS |
| CTTTCTCCCACGACATATGG+GGG | 0.647715 | 4_1:-20496020 | None:intergenic |
| TTAGACAAAACGCAACAATG+AGG | 0.653496 | 4_1:-20492388 | None:intergenic |
| ATTGGAGGTTTACTGATACG+TGG | 0.665786 | 4_1:-20497377 | None:intergenic |
| CATGTTTCAGGTAGTCTCGG+AGG | 0.687822 | 4_1:+20496482 | Msa0539530:intron |
| GAGAAAATCGAAACTCATGG+AGG | 0.704750 | 4_1:+20492435 | Msa0539530:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTTTTTTTTTAAATTCG+AGG | + | chr4_1:20492889-20492908 | Msa0539530:intron | 10.0% |
| !!! | AATTTTTTTTTTAAATTCGA+GGG | + | chr4_1:20492890-20492909 | Msa0539530:intron | 10.0% |
| !!! | GAAGTTTTAATTATTTAAAA+TGG | - | chr4_1:20494276-20494295 | None:intergenic | 10.0% |
| !!! | TTTTAAAACAAAAATTTGTT+TGG | - | chr4_1:20494769-20494788 | None:intergenic | 10.0% |
| !!! | TAAATATTTTGAAACAAAAT+TGG | + | chr4_1:20494830-20494849 | Msa0539530:intron | 10.0% |
| !!! | AAATATTTTGAAACAAAATT+GGG | + | chr4_1:20494831-20494850 | Msa0539530:intron | 10.0% |
| !!! | ATATTTATATGTTAGATTTT+CGG | + | chr4_1:20494987-20495006 | Msa0539530:intron | 10.0% |
| !! | AATAAAATAGATATGTAATT+TGG | - | chr4_1:20495819-20495838 | None:intergenic | 10.0% |
| !! | GATAAAATAAAATCATAATA+TGG | + | chr4_1:20496379-20496398 | Msa0539530:intron | 10.0% |
| !!! | TTTTTGTTTTTATGAAATAG+CGG | - | chr4_1:20493110-20493129 | None:intergenic | 15.0% |
| !! | AAACAAAAACAACAAAAATA+AGG | + | chr4_1:20493121-20493140 | Msa0539530:intron | 15.0% |
| !! | TTGTTAAACAAAAAAATATC+AGG | + | chr4_1:20493298-20493317 | Msa0539530:intron | 15.0% |
| !!! | TCTTTTCATATATTATTCTT+TGG | + | chr4_1:20493673-20493692 | Msa0539530:intron | 15.0% |
| !! | TGTTATAAAACAAGATATAA+AGG | + | chr4_1:20493749-20493768 | Msa0539530:intron | 15.0% |
| !!! | TTTTTGTTTAAGCATATATT+TGG | + | chr4_1:20494429-20494448 | Msa0539530:intron | 15.0% |
| !!! | TTAAAATATTAACAAGGTTT+TGG | - | chr4_1:20494801-20494820 | None:intergenic | 15.0% |
| !! | AGATTGTTAAAATATTAACA+AGG | - | chr4_1:20494807-20494826 | None:intergenic | 15.0% |
| !!! | TATAATTAAGTGTTGTTAAA+TGG | + | chr4_1:20494876-20494895 | Msa0539530:intron | 15.0% |
| !!! | AATTCTTGTTTCTTTTTTAT+TGG | + | chr4_1:20495878-20495897 | Msa0539530:intron | 15.0% |
| !! | ATCAAAATTCAAAACTTTAA+AGG | - | chr4_1:20495972-20495991 | None:intergenic | 15.0% |
| !! | AAAATAAAATCATAATATGG+AGG | + | chr4_1:20496382-20496401 | Msa0539530:intron | 15.0% |
| !! | AAATAAAATCATAATATGGA+GGG | + | chr4_1:20496383-20496402 | Msa0539530:intron | 15.0% |
| !!! | TTGATAGAATTATTTGTTTT+TGG | + | chr4_1:20496955-20496974 | Msa0539530:intron | 15.0% |
| !! | AAGTACAAATAAAAAATAGA+AGG | - | chr4_1:20497286-20497305 | None:intergenic | 15.0% |
| !!! | TATTTGTACTTTTCTTTAAA+TGG | + | chr4_1:20497295-20497314 | Msa0539530:intron | 15.0% |
| !!! | AATTTAAATTATTTCTTGCA+AGG | - | chr4_1:20497658-20497677 | None:intergenic | 15.0% |
| !!! | ATATGTGTGTAATGTTTTTT+TGG | + | chr4_1:20492827-20492846 | Msa0539530:intron | 20.0% |
| !!! | TATGTGTGTAATGTTTTTTT+GGG | + | chr4_1:20492828-20492847 | Msa0539530:intron | 20.0% |
| !!! | AGTTGATAGAAAAATCAATT+AGG | + | chr4_1:20492919-20492938 | Msa0539530:intron | 20.0% |
| !!! | GTTGATAGAAAAATCAATTA+GGG | + | chr4_1:20492920-20492939 | Msa0539530:intron | 20.0% |
| !!! | CTTGGTTTTAAAAAAAACAA+GGG | - | chr4_1:20493421-20493440 | None:intergenic | 20.0% |
| !! | TTCTCTTAAAAATGAAATAG+CGG | + | chr4_1:20493455-20493474 | Msa0539530:intron | 20.0% |
| !!! | GATTGGAAATTGATTTTATT+TGG | - | chr4_1:20494362-20494381 | None:intergenic | 20.0% |
| !! | TGTAAATGAAATTCATTGTT+TGG | - | chr4_1:20494399-20494418 | None:intergenic | 20.0% |
| !!! | CATATATTTGGTTTCAATTT+TGG | + | chr4_1:20494441-20494460 | Msa0539530:intron | 20.0% |
| !! | CATAAATGAAATTCATTGTT+TGG | - | chr4_1:20495070-20495089 | None:intergenic | 20.0% |
| !! | TGAAAAAGTTATTAATCACA+CGG | - | chr4_1:20495246-20495265 | None:intergenic | 20.0% |
| !! | AAATCTTGAAAGTTATTGTT+TGG | + | chr4_1:20495617-20495636 | Msa0539530:intron | 20.0% |
| !! | TTATAAGCATAAACTACAAA+GGG | - | chr4_1:20496226-20496245 | None:intergenic | 20.0% |
| !! | TTTATAAGCATAAACTACAA+AGG | - | chr4_1:20496227-20496246 | None:intergenic | 20.0% |
| !!! | ACTTTATTGATTTATGTATC+TGG | + | chr4_1:20496305-20496324 | Msa0539530:intron | 20.0% |
| !! | TTAACTTAGTAAAAGAATCA+AGG | + | chr4_1:20496633-20496652 | Msa0539530:intron | 20.0% |
| !!! | TTGTTTGTATTTTCAGTTTT+TGG | + | chr4_1:20497705-20497724 | Msa0539530:three_prime_UTR | 20.0% |
| !! | TTTGAATCTGGAATTGAATT+AGG | - | chr4_1:20492502-20492521 | None:intergenic | 25.0% |
| ! | TTAGGATTTGAATCAGAATT+GGG | - | chr4_1:20492526-20492545 | None:intergenic | 25.0% |
| !!! | ACAAGTAGGATTTTTAGATT+TGG | - | chr4_1:20492626-20492645 | None:intergenic | 25.0% |
| !! | TCTAAAAATCCTACTTGTTA+TGG | + | chr4_1:20492628-20492647 | Msa0539530:CDS | 25.0% |
| !!! | TTCTGCTTTGCATTTTTTAT+TGG | + | chr4_1:20492716-20492735 | Msa0539530:intron | 25.0% |
| !!! | TCTGCTTTGCATTTTTTATT+GGG | + | chr4_1:20492717-20492736 | Msa0539530:intron | 25.0% |
| ! | TGTGAAATTGTTCATGTTTA+TGG | + | chr4_1:20492762-20492781 | Msa0539530:intron | 25.0% |
| ! | GTGAAATTGTTCATGTTTAT+GGG | + | chr4_1:20492763-20492782 | Msa0539530:intron | 25.0% |
| ! | TGCTGAAAAATGAAAAATCT+AGG | + | chr4_1:20492999-20493018 | Msa0539530:intron | 25.0% |
| !! | GTTTTATATGAACAAAACAG+AGG | + | chr4_1:20493165-20493184 | Msa0539530:intron | 25.0% |
| ! | AACTAGAACAAAAAAGTAAC+AGG | + | chr4_1:20493258-20493277 | Msa0539530:intron | 25.0% |
| !!! | CCTTGGTTTTAAAAAAAACA+AGG | - | chr4_1:20493422-20493441 | None:intergenic | 25.0% |
| !!! | CCTTGTTTTTTTTAAAACCA+AGG | + | chr4_1:20493419-20493438 | Msa0539530:intron | 25.0% |
| ! | AGAAAATACAAAATTGTCCT+TGG | - | chr4_1:20493439-20493458 | None:intergenic | 25.0% |
| ! | ACGAAATAATAAGCTACATA+GGG | - | chr4_1:20493700-20493719 | None:intergenic | 25.0% |
| ! | TACGAAATAATAAGCTACAT+AGG | - | chr4_1:20493701-20493720 | None:intergenic | 25.0% |
| !!! | TTTCGTATGTTATGTCATTT+TGG | + | chr4_1:20493714-20493733 | Msa0539530:intron | 25.0% |
| ! | ATTATAATCCGGATAGATTA+AGG | - | chr4_1:20493969-20493988 | None:intergenic | 25.0% |
| !! | ATCTATCCGGATTATAATTT+TGG | + | chr4_1:20493971-20493990 | Msa0539530:intron | 25.0% |
| ! | GATTCACCAAAATTATAATC+CGG | - | chr4_1:20493980-20493999 | None:intergenic | 25.0% |
| ! | AGCAAAATGTGAAAAATGAA+AGG | + | chr4_1:20494197-20494216 | Msa0539530:intron | 25.0% |
| ! | GCAAAATGTGAAAAATGAAA+GGG | + | chr4_1:20494198-20494217 | Msa0539530:intron | 25.0% |
| ! | TGATAAAGTTGACAAAACTA+TGG | + | chr4_1:20494241-20494260 | Msa0539530:intron | 25.0% |
| !!! | TGAATGTAAAGTGATTTGTT+TGG | - | chr4_1:20494648-20494667 | None:intergenic | 25.0% |
| ! | ATTGGGAATTGATTAAGTAT+TGG | - | chr4_1:20495026-20495045 | None:intergenic | 25.0% |
| !! | ATTAGTCTAGAAAGATTTAG+AGG | + | chr4_1:20495161-20495180 | Msa0539530:intron | 25.0% |
| ! | GAAAAAGTTATTAATCACAC+GGG | - | chr4_1:20495245-20495264 | None:intergenic | 25.0% |
| ! | AAAGTTATTGTTTGGAAGTT+TGG | + | chr4_1:20495625-20495644 | Msa0539530:intron | 25.0% |
| ! | AAGTAAAGCAAAATCAAACA+TGG | - | chr4_1:20495730-20495749 | None:intergenic | 25.0% |
| ! | TTTAGTAAGCAATATCTGTT+AGG | - | chr4_1:20495859-20495878 | None:intergenic | 25.0% |
| !! | AATTTCAAGTATGCTTGTAT+TGG | + | chr4_1:20496080-20496099 | Msa0539530:CDS | 25.0% |
| !! | ATTTCAAGTATGCTTGTATT+GGG | + | chr4_1:20496081-20496100 | Msa0539530:CDS | 25.0% |
| !! | CAAATATTAATTTGAGGCTA+AGG | + | chr4_1:20496354-20496373 | Msa0539530:intron | 25.0% |
| ! | AATGTAGTCCATCAAAATAT+GGG | + | chr4_1:20496437-20496456 | Msa0539530:intron | 25.0% |
| ! | AAAAGAAGGAAATGACATAT+GGG | - | chr4_1:20496600-20496619 | None:intergenic | 25.0% |
| ! | TTTAAAAACCTCAGCATATT+TGG | + | chr4_1:20496663-20496682 | Msa0539530:intron | 25.0% |
| ! | TGTTTATTATCAACATAGCA+AGG | + | chr4_1:20496842-20496861 | Msa0539530:intron | 25.0% |
| ! | ATTTCTTTCTATATGAGCAT+CGG | + | chr4_1:20496905-20496924 | Msa0539530:intron | 25.0% |
| ! | CTATCAAAGAGAAATTCTTA+AGG | - | chr4_1:20496942-20496961 | None:intergenic | 25.0% |
| ! | TACACTACACAGTTATAAAT+AGG | - | chr4_1:20497119-20497138 | None:intergenic | 25.0% |
| ! | ATTTCATGTGAAATAGATGA+TGG | - | chr4_1:20497190-20497209 | None:intergenic | 25.0% |
| ! | CACTCAAATCAAATAAATGA+AGG | + | chr4_1:20497226-20497245 | Msa0539530:intron | 25.0% |
| ! | AATAAATGAAGGATTATGCA+TGG | + | chr4_1:20497237-20497256 | Msa0539530:intron | 25.0% |
| ! | TACTACAATGTGTTTATGAA+AGG | - | chr4_1:20497464-20497483 | None:intergenic | 25.0% |
| ! | GTAAAAAACTTGAACAAAGT+CGG | + | chr4_1:20497562-20497581 | Msa0539530:CDS | 25.0% |
| GTTAGGATTTGAATCAGAAT+TGG | - | chr4_1:20492527-20492546 | None:intergenic | 30.0% | |
| !!! | TGTAATGTTTTTTTGGGCTA+GGG | + | chr4_1:20492834-20492853 | Msa0539530:intron | 30.0% |
| ATCAATTAGGGTGATGTAAA+TGG | + | chr4_1:20492932-20492951 | Msa0539530:intron | 30.0% | |
| AGTTTGAACTTGAACATGTT+AGG | + | chr4_1:20492969-20492988 | Msa0539530:intron | 30.0% | |
| AACTTGAACATGTTAGGAAT+AGG | + | chr4_1:20492975-20492994 | Msa0539530:intron | 30.0% | |
| !!! | GTGCTTCAATGTTGATTTTT+TGG | + | chr4_1:20493632-20493651 | Msa0539530:intron | 30.0% |
| ! | GCAGTCTTATCTTAAAATGA+GGG | - | chr4_1:20493896-20493915 | None:intergenic | 30.0% |
| ! | TGCAGTCTTATCTTAAAATG+AGG | - | chr4_1:20493897-20493916 | None:intergenic | 30.0% |
| !!! | CATTCCTTGTGTTGATTTTA+TGG | + | chr4_1:20493915-20493934 | Msa0539530:intron | 30.0% |
| CTTTCCATAAAATCAACACA+AGG | - | chr4_1:20493922-20493941 | None:intergenic | 30.0% | |
| !!! | TGTGTTGATTTTATGGAAAG+TGG | + | chr4_1:20493922-20493941 | Msa0539530:intron | 30.0% |
| !!! | GTGTTGATTTTATGGAAAGT+GGG | + | chr4_1:20493923-20493942 | Msa0539530:intron | 30.0% |
| !!! | TGTTGATTTTATGGAAAGTG+GGG | + | chr4_1:20493924-20493943 | Msa0539530:intron | 30.0% |
| CAATTGAACCTTAATCTATC+CGG | + | chr4_1:20493958-20493977 | Msa0539530:intron | 30.0% | |
| ATCATCTAAAAATGAGTACC+AGG | + | chr4_1:20494028-20494047 | Msa0539530:intron | 30.0% | |
| TCATCTAAAAATGAGTACCA+GGG | + | chr4_1:20494029-20494048 | Msa0539530:intron | 30.0% | |
| ATTCTAGATGATTCTCACAA+GGG | - | chr4_1:20494079-20494098 | None:intergenic | 30.0% | |
| TATTCTAGATGATTCTCACA+AGG | - | chr4_1:20494080-20494099 | None:intergenic | 30.0% | |
| TAGAATACTGTTGTGTAAGA+GGG | + | chr4_1:20494093-20494112 | Msa0539530:intron | 30.0% | |
| !! | TAATGCATAACTTGCTTAGA+TGG | + | chr4_1:20494332-20494351 | Msa0539530:intron | 30.0% |
| TTGTTTGGAGATTGTAACAT+GGG | - | chr4_1:20494384-20494403 | None:intergenic | 30.0% | |
| ATTGTTTGGAGATTGTAACA+TGG | - | chr4_1:20494385-20494404 | None:intergenic | 30.0% | |
| ! | AGAGTCAAAATTGATTCTAG+AGG | + | chr4_1:20494464-20494483 | Msa0539530:intron | 30.0% |
| !! | GCTAGAATTTTAGTAGCTTT+TGG | + | chr4_1:20494563-20494582 | Msa0539530:intron | 30.0% |
| TTGTAACATAACACGAGATT+GGG | - | chr4_1:20495043-20495062 | None:intergenic | 30.0% | |
| !!! | AAAAGCATTTTCAGTCTGTT+TGG | - | chr4_1:20495126-20495145 | None:intergenic | 30.0% |
| !!! | TGTTTGTTGGGTGTTTTTTT+GGG | + | chr4_1:20495446-20495465 | Msa0539530:intron | 30.0% |
| TCAAACATGGTAAAGATACA+AGG | - | chr4_1:20495717-20495736 | None:intergenic | 30.0% | |
| AATGGATGTAACTAGTAAAG+TGG | - | chr4_1:20495776-20495795 | None:intergenic | 30.0% | |
| ACTTGAAATTTGCAAGTTTG+CGG | - | chr4_1:20496070-20496089 | None:intergenic | 30.0% | |
| CTCTCAAAACAAGATAAACT+TGG | - | chr4_1:20496255-20496274 | None:intergenic | 30.0% | |
| !!! | TCTTGTTTTGAGAGTTTTGT+TGG | + | chr4_1:20496261-20496280 | Msa0539530:intron | 30.0% |
| !!! | CTTGTTTTGAGAGTTTTGTT+GGG | + | chr4_1:20496262-20496281 | Msa0539530:intron | 30.0% |
| CAATGTAGTCCATCAAAATA+TGG | + | chr4_1:20496436-20496455 | Msa0539530:intron | 30.0% | |
| GAAAAGAAGGAAATGACATA+TGG | - | chr4_1:20496601-20496620 | None:intergenic | 30.0% | |
| ATGAGTAGTGATTGAAAAGA+AGG | - | chr4_1:20496614-20496633 | None:intergenic | 30.0% | |
| GAAAAGTTCACGAATAGTAT+AGG | - | chr4_1:20497027-20497046 | None:intergenic | 30.0% | |
| TGTCATCAGAAATGTATTAC+CGG | + | chr4_1:20497071-20497090 | Msa0539530:intron | 30.0% | |
| ! | AATAGATGATGGCAATTACT+AGG | - | chr4_1:20497179-20497198 | None:intergenic | 30.0% |
| AATTCTTCTGCTGAAGTAAT+TGG | - | chr4_1:20497398-20497417 | None:intergenic | 30.0% | |
| GAAGAGAAAATCGAAACTCA+TGG | + | chr4_1:20492432-20492451 | Msa0539530:exon | 35.0% | |
| TTAGGATTTCGTTCAGATGT+TGG | - | chr4_1:20492484-20492503 | None:intergenic | 35.0% | |
| TCAGAATTGGGATTTGAATC+TGG | - | chr4_1:20492514-20492533 | None:intergenic | 35.0% | |
| ! | GATTTTCCTTTCACTGTTCT+AGG | - | chr4_1:20492565-20492584 | None:intergenic | 35.0% |
| AGTGAAAGGAAAATCGTGTA+AGG | + | chr4_1:20492570-20492589 | Msa0539530:CDS | 35.0% | |
| GTGAAAGGAAAATCGTGTAA+GGG | + | chr4_1:20492571-20492590 | Msa0539530:CDS | 35.0% | |
| !!! | GTGTAATGTTTTTTTGGGCT+AGG | + | chr4_1:20492833-20492852 | Msa0539530:intron | 35.0% |
| GCTTCCATAGTAGTTAATAG+CGG | + | chr4_1:20493023-20493042 | Msa0539530:intron | 35.0% | |
| CTATCCGCTATTAACTACTA+TGG | - | chr4_1:20493030-20493049 | None:intergenic | 35.0% | |
| !! | TAGTAGTTAATAGCGGATAG+CGG | + | chr4_1:20493030-20493049 | Msa0539530:intron | 35.0% |
| ! | TATCCCGCTATAGCATTTTT+GGG | - | chr4_1:20493071-20493090 | None:intergenic | 35.0% |
| AAGCACATAGTAGTCAATAG+CGG | - | chr4_1:20493618-20493637 | None:intergenic | 35.0% | |
| ! | CCATTTTCTCAAATCACTAC+AGG | - | chr4_1:20493812-20493831 | None:intergenic | 35.0% |
| CCTGTAGTGATTTGAGAAAA+TGG | + | chr4_1:20493809-20493828 | Msa0539530:intron | 35.0% | |
| CTTATCTTAAAATGAGGGCT+AGG | - | chr4_1:20493891-20493910 | None:intergenic | 35.0% | |
| !! | GTTGATTTTATGGAAAGTGG+GGG | + | chr4_1:20493925-20493944 | Msa0539530:intron | 35.0% |
| CTAGAATACTGTTGTGTAAG+AGG | + | chr4_1:20494092-20494111 | Msa0539530:intron | 35.0% | |
| AGAATACTGTTGTGTAAGAG+GGG | + | chr4_1:20494094-20494113 | Msa0539530:intron | 35.0% | |
| ATGAAAGGGAAACATATGAG+AGG | + | chr4_1:20494212-20494231 | Msa0539530:intron | 35.0% | |
| TCACACTTGATGTATGATGT+TGG | + | chr4_1:20494729-20494748 | Msa0539530:intron | 35.0% | |
| ATTGGGATCTAAGTAAAGAG+AGG | + | chr4_1:20494848-20494867 | Msa0539530:intron | 35.0% | |
| GTTGTAACATAACACGAGAT+TGG | - | chr4_1:20495044-20495063 | None:intergenic | 35.0% | |
| CTAGAAAGATTTAGAGGTGA+TGG | + | chr4_1:20495167-20495186 | Msa0539530:intron | 35.0% | |
| TAGACAGGAAATTTGGATGT+CGG | + | chr4_1:20495295-20495314 | Msa0539530:intron | 35.0% | |
| ! | TGTTAGTAGTGTTTCTGTTC+TGG | + | chr4_1:20495330-20495349 | Msa0539530:CDS | 35.0% |
| !!! | CTGTTTGTTGGGTGTTTTTT+TGG | + | chr4_1:20495445-20495464 | Msa0539530:intron | 35.0% |
| AAAAAGACGCAATACAACAC+GGG | - | chr4_1:20495526-20495545 | None:intergenic | 35.0% | |
| CAAAAAGACGCAATACAACA+CGG | - | chr4_1:20495527-20495546 | None:intergenic | 35.0% | |
| TAATTTGGATGATCACCATG+AGG | - | chr4_1:20495804-20495823 | None:intergenic | 35.0% | |
| AAGCATAAACTACAAAGGGA+AGG | - | chr4_1:20496222-20496241 | None:intergenic | 35.0% | |
| !! | GCAAGCATCAATTTGTTATG+CGG | + | chr4_1:20496329-20496348 | Msa0539530:intron | 35.0% |
| !! | CAAGCATCAATTTGTTATGC+GGG | + | chr4_1:20496330-20496349 | Msa0539530:intron | 35.0% |
| ! | GCGGGTCAAATATTAATTTG+AGG | + | chr4_1:20496348-20496367 | Msa0539530:intron | 35.0% |
| AAATCATAATATGGAGGGTG+AGG | + | chr4_1:20496388-20496407 | Msa0539530:intron | 35.0% | |
| AATCATAATATGGAGGGTGA+GGG | + | chr4_1:20496389-20496408 | Msa0539530:intron | 35.0% | |
| !! | AAACTTGGCCCATATTTTGA+TGG | - | chr4_1:20496448-20496467 | None:intergenic | 35.0% |
| ATAGTCATCCAAATATGCTG+AGG | - | chr4_1:20496674-20496693 | None:intergenic | 35.0% | |
| ATATTTGGATGACTATCCTG+CGG | + | chr4_1:20496678-20496697 | Msa0539530:intron | 35.0% | |
| GCTTAACACATTCACATCTT+GGG | - | chr4_1:20496712-20496731 | None:intergenic | 35.0% | |
| AGCTTAACACATTCACATCT+TGG | - | chr4_1:20496713-20496732 | None:intergenic | 35.0% | |
| TGCTTCAAAAGCAAGTGTTA+TGG | - | chr4_1:20496994-20497013 | None:intergenic | 35.0% | |
| ! | AACTTTTCCACACTTGGTAA+TGG | + | chr4_1:20497039-20497058 | Msa0539530:intron | 35.0% |
| !! | ACTTTTCCACACTTGGTAAT+GGG | + | chr4_1:20497040-20497059 | Msa0539530:intron | 35.0% |
| ATAGGATAGTGTTGTGTTTG+CGG | - | chr4_1:20497101-20497120 | None:intergenic | 35.0% | |
| GATTTGAGTGAGTTTACTGT+TGG | - | chr4_1:20497216-20497235 | None:intergenic | 35.0% | |
| AATGAAGGATTATGCATGGA+TGG | + | chr4_1:20497241-20497260 | Msa0539530:intron | 35.0% | |
| !!! | GGTTTGTTTTGTTGTGCTTT+TGG | + | chr4_1:20497316-20497335 | Msa0539530:intron | 35.0% |
| TTTACTGATACGTGGTTGAT+GGG | - | chr4_1:20497372-20497391 | None:intergenic | 35.0% | |
| CAGCAGAAGAATTCTTAAAC+AGG | + | chr4_1:20497405-20497424 | Msa0539530:CDS | 35.0% | |
| ! | GGCAAGTAGAAATTTTCAGT+TGG | + | chr4_1:20497426-20497445 | Msa0539530:CDS | 35.0% |
| ! | CTTGAATGTTCTAAATGTGC+AGG | + | chr4_1:20497503-20497522 | Msa0539530:intron | 35.0% |
| ! | CATCTAGGGACTCTTTTATA+CGG | - | chr4_1:20497591-20497610 | None:intergenic | 35.0% |
| CCGATATAGAATGTCATCTA+GGG | - | chr4_1:20497605-20497624 | None:intergenic | 35.0% | |
| CCCTAGATGACATTCTATAT+CGG | + | chr4_1:20497602-20497621 | Msa0539530:CDS | 35.0% | |
| TCCGATATAGAATGTCATCT+AGG | - | chr4_1:20497606-20497625 | None:intergenic | 35.0% | |
| TGTAATGACCAGCTTTACTT+GGG | - | chr4_1:20497631-20497650 | None:intergenic | 35.0% | |
| TTGTAATGACCAGCTTTACT+TGG | - | chr4_1:20497632-20497651 | None:intergenic | 35.0% | |
| GAGAAAATCGAAACTCATGG+AGG | + | chr4_1:20492435-20492454 | Msa0539530:exon | 40.0% | |
| !! | TTCTAGGACGATTAGGGTTA+GGG | - | chr4_1:20492549-20492568 | None:intergenic | 40.0% |
| !! | TCACTGTTCTAGGACGATTA+GGG | - | chr4_1:20492555-20492574 | None:intergenic | 40.0% |
| !! | TTCACTGTTCTAGGACGATT+AGG | - | chr4_1:20492556-20492575 | None:intergenic | 40.0% |
| AATCGTCCTAGAACAGTGAA+AGG | + | chr4_1:20492556-20492575 | Msa0539530:CDS | 40.0% | |
| CTGGACAAACCATAACAAGT+AGG | - | chr4_1:20492640-20492659 | None:intergenic | 40.0% | |
| ! | ATCCCGCTATAGCATTTTTG+GGG | - | chr4_1:20493070-20493089 | None:intergenic | 40.0% |
| ! | CTATCCCGCTATAGCATTTT+TGG | - | chr4_1:20493072-20493091 | None:intergenic | 40.0% |
| CAGAAACAAAGAGAGCAGAA+TGG | + | chr4_1:20493209-20493228 | Msa0539530:intron | 40.0% | |
| AAAGAGAGCAGAATGGAGTT+TGG | + | chr4_1:20493216-20493235 | Msa0539530:intron | 40.0% | |
| TAGAGGAAGATTTACAGCAG+AGG | + | chr4_1:20493344-20493363 | Msa0539530:intron | 40.0% | |
| TGTAGTGTCTAACACATACG+TGG | - | chr4_1:20493851-20493870 | None:intergenic | 40.0% | |
| GAATACTGTTGTGTAAGAGG+GGG | + | chr4_1:20494095-20494114 | Msa0539530:intron | 40.0% | |
| AATACTGTTGTGTAAGAGGG+GGG | + | chr4_1:20494096-20494115 | Msa0539530:intron | 40.0% | |
| ! | ACCTCTTTTTATCTTCGCGA+GGG | - | chr4_1:20494150-20494169 | None:intergenic | 40.0% |
| ! | AACCTCTTTTTATCTTCGCG+AGG | - | chr4_1:20494151-20494170 | None:intergenic | 40.0% |
| TGGAGATTGTAACATGGGAT+TGG | - | chr4_1:20494379-20494398 | None:intergenic | 40.0% | |
| TGCCATAGGCAATTTGTGAA+GGG | + | chr4_1:20494929-20494948 | Msa0539530:intron | 40.0% | |
| ATCCCTTCACAAATTGCCTA+TGG | - | chr4_1:20494934-20494953 | None:intergenic | 40.0% | |
| !! | TAAGTATTGGCGATAGCAGA+AGG | - | chr4_1:20495013-20495032 | None:intergenic | 40.0% |
| AGATAGAAAAACCACCCCAT+CGG | - | chr4_1:20495193-20495212 | None:intergenic | 40.0% | |
| CAGCACTTAGACAGGAAATT+TGG | + | chr4_1:20495288-20495307 | Msa0539530:intron | 40.0% | |
| GGAAATTTGGATGTCGGTAT+TGG | + | chr4_1:20495301-20495320 | Msa0539530:intron | 40.0% | |
| ! | AATTTGGATGTCGGTATTGG+TGG | + | chr4_1:20495304-20495323 | Msa0539530:CDS | 40.0% |
| ! | CGTGTTGTATTGCGTCTTTT+TGG | + | chr4_1:20495525-20495544 | Msa0539530:intron | 40.0% |
| ATTTAAGCAAAGCCTGCACA+AGG | - | chr4_1:20495571-20495590 | None:intergenic | 40.0% | |
| TACATCCATTCTTGTCCTCA+TGG | + | chr4_1:20495786-20495805 | Msa0539530:intron | 40.0% | |
| ! | TGAGTTGGAAGCTTCTAAAG+AGG | + | chr4_1:20496043-20496062 | Msa0539530:CDS | 40.0% |
| ! | GAGTTGGAAGCTTCTAAAGA+GGG | + | chr4_1:20496044-20496063 | Msa0539530:CDS | 40.0% |
| CATAAACTACAAAGGGAAGG+AGG | - | chr4_1:20496219-20496238 | None:intergenic | 40.0% | |
| !!! | TGAGAGTTTTGTTGGGAGTT+AGG | + | chr4_1:20496269-20496288 | Msa0539530:intron | 40.0% |
| ATCATAATATGGAGGGTGAG+GGG | + | chr4_1:20496390-20496409 | Msa0539530:intron | 40.0% | |
| GTGCAATACTGTCAGAAACT+TGG | - | chr4_1:20496463-20496482 | None:intergenic | 40.0% | |
| GACAGTATTGCACATGTTTC+AGG | + | chr4_1:20496470-20496489 | Msa0539530:intron | 40.0% | |
| AATCCTTCTACTTCACCTGT+TGG | + | chr4_1:20496507-20496526 | Msa0539530:CDS | 40.0% | |
| ! | TTCGTGAACTTTTCCACACT+TGG | + | chr4_1:20497033-20497052 | Msa0539530:intron | 40.0% |
| !!! | CTTTTCCACACTTGGTAATG+GGG | + | chr4_1:20497041-20497060 | Msa0539530:intron | 40.0% |
| ! | AATTACTAGGAAGGCATGCA+TGG | - | chr4_1:20497166-20497185 | None:intergenic | 40.0% |
| ! | GATGATGGCAATTACTAGGA+AGG | - | chr4_1:20497175-20497194 | None:intergenic | 40.0% |
| GTTTACTGATACGTGGTTGA+TGG | - | chr4_1:20497373-20497392 | None:intergenic | 40.0% | |
| ATTGGAGGTTTACTGATACG+TGG | - | chr4_1:20497380-20497399 | None:intergenic | 40.0% | |
| TCTTCTGCTGAAGTAATTGG+AGG | - | chr4_1:20497395-20497414 | None:intergenic | 40.0% | |
| TCAGAAAAATGCTACCCTAG+TGG | + | chr4_1:20497528-20497547 | Msa0539530:CDS | 40.0% | |
| !! | GGAGCTTGTTGTTGTTCTCT+TGG | - | chr4_1:20492463-20492482 | None:intergenic | 45.0% |
| !! | GTTCTAGGACGATTAGGGTT+AGG | - | chr4_1:20492550-20492569 | None:intergenic | 45.0% |
| !!! | CGCTATAGCATTTTTGGGGT+CGG | - | chr4_1:20493066-20493085 | None:intergenic | 45.0% |
| CGACCCCAAAAATGCTATAG+CGG | + | chr4_1:20493064-20493083 | Msa0539530:intron | 45.0% | |
| GACCCCAAAAATGCTATAGC+GGG | + | chr4_1:20493065-20493084 | Msa0539530:intron | 45.0% | |
| ! | GATTTTATGGAAAGTGGGGG+TGG | + | chr4_1:20493928-20493947 | Msa0539530:intron | 45.0% |
| ATACTGTTGTGTAAGAGGGG+GGG | + | chr4_1:20494097-20494116 | Msa0539530:intron | 45.0% | |
| TCCCTCGCGAAGATAAAAAG+AGG | + | chr4_1:20494146-20494165 | Msa0539530:intron | 45.0% | |
| ! | GTGTTGTTAAATGGCATCCG+TGG | + | chr4_1:20494885-20494904 | Msa0539530:intron | 45.0% |
| GATTTCTCGACAACTGCCAT+AGG | + | chr4_1:20494915-20494934 | Msa0539530:intron | 45.0% | |
| CTGCCATAGGCAATTTGTGA+AGG | + | chr4_1:20494928-20494947 | Msa0539530:intron | 45.0% | |
| ! | ATTTAGAGGTGATGGCCGAT+GGG | + | chr4_1:20495175-20495194 | Msa0539530:intron | 45.0% |
| TGCGATAACAGCACTTAGAC+AGG | + | chr4_1:20495280-20495299 | Msa0539530:intron | 45.0% | |
| ! | GTAGTGTTTCTGTTCTGGTG+TGG | + | chr4_1:20495335-20495354 | Msa0539530:CDS | 45.0% |
| ! | TGTCAGATGCTTTTCCAGCT+GGG | + | chr4_1:20495382-20495401 | Msa0539530:CDS | 45.0% |
| ! | TGCTTTTCCAGCTGGGATTT+TGG | + | chr4_1:20495389-20495408 | Msa0539530:CDS | 45.0% |
| ! | GCTTTTCCAGCTGGGATTTT+GGG | + | chr4_1:20495390-20495409 | Msa0539530:CDS | 45.0% |
| ! | GATTTTGGGCGTGTGTTTCA+GGG | + | chr4_1:20495404-20495423 | Msa0539530:CDS | 45.0% |
| !! | TTCAGGGTTTTGTGGCTGTT+TGG | + | chr4_1:20495420-20495439 | Msa0539530:CDS | 45.0% |
| !! | TCAGGGTTTTGTGGCTGTTT+GGG | + | chr4_1:20495421-20495440 | Msa0539530:CDS | 45.0% |
| GCTGTTTGGGTCTGTTTGTT+GGG | + | chr4_1:20495434-20495453 | Msa0539530:intron | 45.0% | |
| ATATAGGAGGAACACCCGAT+GGG | - | chr4_1:20495497-20495516 | None:intergenic | 45.0% | |
| TATATAGGAGGAACACCCGA+TGG | - | chr4_1:20495498-20495517 | None:intergenic | 45.0% | |
| ACAACACGGGCTCTGTATAT+AGG | - | chr4_1:20495513-20495532 | None:intergenic | 45.0% | |
| AGGCGCACAAGCTAACTAAA+GGG | - | chr4_1:20495551-20495570 | None:intergenic | 45.0% | |
| AAGGCGCACAAGCTAACTAA+AGG | - | chr4_1:20495552-20495571 | None:intergenic | 45.0% | |
| GATCACCATGAGGACAAGAA+TGG | - | chr4_1:20495794-20495813 | None:intergenic | 45.0% | |
| ACTTTCTCCCACGACATATG+GGG | - | chr4_1:20496024-20496043 | None:intergenic | 45.0% | |
| CACTTTCTCCCACGACATAT+GGG | - | chr4_1:20496025-20496044 | None:intergenic | 45.0% | |
| TCACTTTCTCCCACGACATA+TGG | - | chr4_1:20496026-20496045 | None:intergenic | 45.0% | |
| AGATTCTTCACCTGACTCAC+AGG | + | chr4_1:20496127-20496146 | Msa0539530:CDS | 45.0% | |
| ! | GCAAAATTGCCCTTTTGCGT+TGG | + | chr4_1:20496158-20496177 | Msa0539530:CDS | 45.0% |
| ACCTCAAGTCCAACGCAAAA+GGG | - | chr4_1:20496170-20496189 | None:intergenic | 45.0% | |
| AACCTCAAGTCCAACGCAAA+AGG | - | chr4_1:20496171-20496190 | None:intergenic | 45.0% | |
| CGTTGGACTTGAGGTTTCAA+GGG | + | chr4_1:20496175-20496194 | Msa0539530:CDS | 45.0% | |
| ! | GCACATGTTTCAGGTAGTCT+CGG | + | chr4_1:20496479-20496498 | Msa0539530:intron | 45.0% |
| ! | TTAGTTTGACGAGCATGAGC+AGG | - | chr4_1:20496540-20496559 | None:intergenic | 45.0% |
| GCTCATGCTCGTCAAACTAA+CGG | + | chr4_1:20496540-20496559 | Msa0539530:CDS | 45.0% | |
| ATCTTGGGAAAAGTTACCGC+AGG | - | chr4_1:20496697-20496716 | None:intergenic | 45.0% | |
| AATGCTACCCTAGTGGCATA+CGG | + | chr4_1:20497535-20497554 | Msa0539530:CDS | 45.0% | |
| TACAACACCGTATGCCACTA+GGG | - | chr4_1:20497545-20497564 | None:intergenic | 45.0% | |
| TTACAACACCGTATGCCACT+AGG | - | chr4_1:20497546-20497565 | None:intergenic | 45.0% | |
| GGACGATTAGGGTTAGGGTT+AGG | - | chr4_1:20492544-20492563 | None:intergenic | 50.0% | |
| ! | TGGTTTGTCCAGAACGCTTC+AGG | + | chr4_1:20492648-20492667 | Msa0539530:CDS | 50.0% |
| TTGTCCAGAACGCTTCAGGA+AGG | + | chr4_1:20492652-20492671 | Msa0539530:CDS | 50.0% | |
| ! | GATACCTTCCTGAAGCGTTC+TGG | - | chr4_1:20492659-20492678 | None:intergenic | 50.0% |
| AGAGAGAGAGAGAGAGAGAG+GGG | - | chr4_1:20492690-20492709 | None:intergenic | 50.0% | |
| GAGAGAGAGAGAGAGAGAGA+GGG | - | chr4_1:20492691-20492710 | None:intergenic | 50.0% | |
| AGAGAGAGAGAGAGAGAGAG+AGG | - | chr4_1:20492690-20492709 | None:intergenic | 50.0% | |
| GAGCAAACGCGACAAAGTAG+AGG | + | chr4_1:20493327-20493346 | Msa0539530:intron | 50.0% | |
| ! | AACGCTTCGTAGCGGTTTTG+CGG | - | chr4_1:20493488-20493507 | None:intergenic | 50.0% |
| !! | GTGAGATAGCGGTGCTATAG+CGG | - | chr4_1:20493514-20493533 | None:intergenic | 50.0% |
| TATCTCACACCGCAACGCTA+TGG | + | chr4_1:20493526-20493545 | Msa0539530:intron | 50.0% | |
| !! | AGTGTCGTCTCTGGTGTCAT+AGG | - | chr4_1:20493778-20493797 | None:intergenic | 50.0% |
| TACTATGAGAGCGACTACCC+TGG | - | chr4_1:20494049-20494068 | None:intergenic | 50.0% | |
| TACTGTTGTGTAAGAGGGGG+GGG | + | chr4_1:20494098-20494117 | Msa0539530:intron | 50.0% | |
| ! | GATTTAGAGGTGATGGCCGA+TGG | + | chr4_1:20495174-20495193 | Msa0539530:intron | 50.0% |
| ! | TTTAGAGGTGATGGCCGATG+GGG | + | chr4_1:20495176-20495195 | Msa0539530:intron | 50.0% |
| ! | TGTTTCTGTTCTGGTGTGGC+AGG | + | chr4_1:20495339-20495358 | Msa0539530:CDS | 50.0% |
| ! | CTGTCAGATGCTTTTCCAGC+TGG | + | chr4_1:20495381-20495400 | Msa0539530:CDS | 50.0% |
| ! | GGATTTTGGGCGTGTGTTTC+AGG | + | chr4_1:20495403-20495422 | Msa0539530:CDS | 50.0% |
| ! | GCGTGTGTTTCAGGGTTTTG+TGG | + | chr4_1:20495412-20495431 | Msa0539530:CDS | 50.0% |
| GGCTGTTTGGGTCTGTTTGT+TGG | + | chr4_1:20495433-20495452 | Msa0539530:intron | 50.0% | |
| ACACGGGCTCTGTATATAGG+AGG | - | chr4_1:20495510-20495529 | None:intergenic | 50.0% | |
| CTTTCTCCCACGACATATGG+GGG | - | chr4_1:20496023-20496042 | None:intergenic | 50.0% | |
| TGTCGTGGGAGAAAGTGAGT+TGG | + | chr4_1:20496028-20496047 | Msa0539530:CDS | 50.0% | |
| !! | GCTGTTTTGTCCTGTGAGTC+AGG | - | chr4_1:20496140-20496159 | None:intergenic | 50.0% |
| GCGTTGGACTTGAGGTTTCA+AGG | + | chr4_1:20496174-20496193 | Msa0539530:CDS | 50.0% | |
| ATAATATGGAGGGTGAGGGG+AGG | + | chr4_1:20496393-20496412 | Msa0539530:intron | 50.0% | |
| ! | CATGTTTCAGGTAGTCTCGG+AGG | + | chr4_1:20496482-20496501 | Msa0539530:intron | 50.0% |
| TGGCCAACAGGTGAAGTAGA+AGG | - | chr4_1:20496513-20496532 | None:intergenic | 50.0% | |
| ACCCAAGTCACAGAAGCAGT+AGG | + | chr4_1:20496746-20496765 | Msa0539530:intron | 50.0% | |
| CCCTACTGCTTCTGTGACTT+GGG | - | chr4_1:20496750-20496769 | None:intergenic | 50.0% | |
| CCCAAGTCACAGAAGCAGTA+GGG | + | chr4_1:20496747-20496766 | Msa0539530:intron | 50.0% | |
| AGTTGCCCCATTACCAAGTG+TGG | - | chr4_1:20497049-20497068 | None:intergenic | 50.0% | |
| GTGTTGTGTTTGCGGTAAGC+CGG | - | chr4_1:20497093-20497112 | None:intergenic | 50.0% | |
| !! | GTTGATGGGCTGGATGTTCA+CGG | - | chr4_1:20497358-20497377 | None:intergenic | 50.0% |
| ATCGGAGACCCAAGTAAAGC+TGG | + | chr4_1:20497620-20497639 | Msa0539530:exon | 50.0% | |
| AGAGAGAGAGAGAGAGAGGG+GGG | - | chr4_1:20492688-20492707 | None:intergenic | 55.0% | |
| GAGAGAGAGAGAGAGAGAGG+GGG | - | chr4_1:20492689-20492708 | None:intergenic | 55.0% | |
| AGCGTTGCGGTGTGAGATAG+CGG | - | chr4_1:20493525-20493544 | None:intergenic | 55.0% | |
| CGCAACAAGCCATAGCGTTG+CGG | - | chr4_1:20493538-20493557 | None:intergenic | 55.0% | |
| CTACGTGTCAGTGTCGTCTC+TGG | - | chr4_1:20493787-20493806 | None:intergenic | 55.0% | |
| GTTAAATGGCATCCGTGGCG+TGG | + | chr4_1:20494890-20494909 | Msa0539530:intron | 55.0% | |
| TCGAGAAATCCACCACGCCA+CGG | - | chr4_1:20494905-20494924 | None:intergenic | 55.0% | |
| TACAGCCTATGACGCAGCCA+TGG | - | chr4_1:20494962-20494981 | None:intergenic | 55.0% | |
| GGCTGCGTCATAGGCTGTAA+TGG | + | chr4_1:20494963-20494982 | Msa0539530:intron | 55.0% | |
| TGTTCTGGTGTGGCAGGTCT+GGG | + | chr4_1:20495345-20495364 | Msa0539530:CDS | 55.0% | |
| GTTATGCCTTGCGCTCCCAT+CGG | + | chr4_1:20495479-20495498 | Msa0539530:intron | 55.0% | |
| TTATGCCTTGCGCTCCCATC+GGG | + | chr4_1:20495480-20495499 | Msa0539530:intron | 55.0% | |
| !! | TTAGCTTGTGCGCCTTGTGC+AGG | + | chr4_1:20495556-20495575 | Msa0539530:intron | 55.0% |
| ACCAGTTCCCCCATATGTCG+TGG | + | chr4_1:20496013-20496032 | Msa0539530:intron | 55.0% | |
| CCAGTTCCCCCATATGTCGT+GGG | + | chr4_1:20496014-20496033 | Msa0539530:intron | 55.0% | |
| ! | GCCCTTTTGCGTTGGACTTG+AGG | + | chr4_1:20496166-20496185 | Msa0539530:CDS | 55.0% |
| TGAGCAGGAACTTGGCCAAC+AGG | - | chr4_1:20496525-20496544 | None:intergenic | 55.0% | |
| GACGAGCATGAGCAGGAACT+TGG | - | chr4_1:20496533-20496552 | None:intergenic | 55.0% | |
| GCCCTACTGCTTCTGTGACT+TGG | - | chr4_1:20496751-20496770 | None:intergenic | 55.0% | |
| !! | CTGATACGTGGTTGATGGGC+TGG | - | chr4_1:20497368-20497387 | None:intergenic | 55.0% |
| AGAGAGAGAGAGAGAGGGGG+GGG | - | chr4_1:20492686-20492705 | None:intergenic | 60.0% | |
| GAGAGAGAGAGAGAGAGGGG+GGG | - | chr4_1:20492687-20492706 | None:intergenic | 60.0% | |
| !! | TGGCTTGTTGCGTAGCGCTC+CGG | + | chr4_1:20493546-20493565 | Msa0539530:intron | 60.0% |
| GGCCAATAGCGCCGCTATAG+CGG | - | chr4_1:20493597-20493616 | None:intergenic | 60.0% | |
| TTGTGTAAGAGGGGGGGGCT+GGG | + | chr4_1:20494103-20494122 | Msa0539530:intron | 60.0% | |
| AAATGGCATCCGTGGCGTGG+TGG | + | chr4_1:20494893-20494912 | Msa0539530:intron | 60.0% | |
| TTGTGAAGGGATGCCCGCCA+TGG | + | chr4_1:20494942-20494961 | Msa0539530:intron | 60.0% | |
| AGCCTATGACGCAGCCATGG+CGG | - | chr4_1:20494959-20494978 | None:intergenic | 60.0% | |
| CTGTTCTGGTGTGGCAGGTC+TGG | + | chr4_1:20495344-20495363 | Msa0539530:CDS | 60.0% | |
| CACACGCCCAAAATCCCAGC+TGG | - | chr4_1:20495399-20495418 | None:intergenic | 60.0% | |
| CCCACGACATATGGGGGAAC+TGG | - | chr4_1:20496017-20496036 | None:intergenic | 60.0% | |
| AGAGAGAGAGAGAGGGGGGG+GGG | - | chr4_1:20492684-20492703 | None:intergenic | 65.0% | |
| GAGAGAGAGAGAGAGGGGGG+GGG | - | chr4_1:20492685-20492704 | None:intergenic | 65.0% | |
| ! | TAGCGGATAGCGGCGCGTAG+CGG | + | chr4_1:20493040-20493059 | Msa0539530:intron | 65.0% |
| AGCGGCGCAACGCTTCGTAG+CGG | - | chr4_1:20493496-20493515 | None:intergenic | 65.0% | |
| !! | GGTGTGGTGTGGTGCTGTGC+CGG | - | chr4_1:20493568-20493587 | None:intergenic | 65.0% |
| GGCCGCTATAGCGGCGCTAT+TGG | + | chr4_1:20493592-20493611 | Msa0539530:intron | 65.0% | |
| GTTGTGTAAGAGGGGGGGGC+TGG | + | chr4_1:20494102-20494121 | Msa0539530:intron | 65.0% | |
| AAGAGGGGGGGGCTGGGAAA+TGG | + | chr4_1:20494109-20494128 | Msa0539530:intron | 65.0% | |
| GCCTATGACGCAGCCATGGC+GGG | - | chr4_1:20494958-20494977 | None:intergenic | 65.0% | |
| ! | AGAGGTGATGGCCGATGGGG+TGG | + | chr4_1:20495179-20495198 | Msa0539530:intron | 65.0% |
| ! | GAACACCCGATGGGAGCGCA+AGG | - | chr4_1:20495488-20495507 | None:intergenic | 65.0% |
| GAGAGAGAGAGAGGGGGGGG+GGG | - | chr4_1:20492683-20492702 | None:intergenic | 70.0% | |
| CAGCACCACACCACACCGCG+CGG | + | chr4_1:20493571-20493590 | Msa0539530:intron | 70.0% | |
| ACACCGCGCGGCCGCTATAG+CGG | + | chr4_1:20493583-20493602 | Msa0539530:intron | 70.0% | |
| GCCCGCCATGGCTGCGTCAT+AGG | + | chr4_1:20494954-20494973 | Msa0539530:intron | 70.0% | |
| GCTATAGCGGCCGCGCGGTG+TGG | - | chr4_1:20493584-20493603 | None:intergenic | 75.0% | |
| ! | AGCGGCCGCGCGGTGTGGTG+TGG | - | chr4_1:20493579-20493598 | None:intergenic | 80.0% |
| ! | GCGCCGCTATAGCGGCCGCG+CGG | - | chr4_1:20493589-20493608 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 20492389 | 20497810 | 20492389 | ID=Msa0539530;Name=Msa0539530 |
| chr4_1 | mRNA | 20492389 | 20497810 | 20492389 | ID=Msa0539530-mRNA-1;Parent=Msa0539530;Name=Msa0539530-mRNA-1;_AED=0.18;_eAED=0.18;_QI=62|0.2|0.5|0.83|0.8|0.83|6|174|282 |
| chr4_1 | exon | 20492389 | 20492673 | 20492389 | ID=Msa0539530-mRNA-1:exon:5874;Parent=Msa0539530-mRNA-1 |
| chr4_1 | exon | 20495302 | 20495442 | 20495302 | ID=Msa0539530-mRNA-1:exon:5875;Parent=Msa0539530-mRNA-1 |
| chr4_1 | exon | 20496018 | 20496196 | 20496018 | ID=Msa0539530-mRNA-1:exon:5876;Parent=Msa0539530-mRNA-1 |
| chr4_1 | exon | 20496492 | 20496561 | 20496492 | ID=Msa0539530-mRNA-1:exon:5877;Parent=Msa0539530-mRNA-1 |
| chr4_1 | exon | 20497354 | 20497477 | 20497354 | ID=Msa0539530-mRNA-1:exon:5878;Parent=Msa0539530-mRNA-1 |
| chr4_1 | exon | 20497525 | 20497810 | 20497525 | ID=Msa0539530-mRNA-1:exon:5879;Parent=Msa0539530-mRNA-1 |
| chr4_1 | five_prime_UTR | 20492389 | 20492450 | 20492389 | ID=Msa0539530-mRNA-1:five_prime_utr;Parent=Msa0539530-mRNA-1 |
| chr4_1 | CDS | 20492451 | 20492673 | 20492451 | ID=Msa0539530-mRNA-1:cds;Parent=Msa0539530-mRNA-1 |
| chr4_1 | CDS | 20495302 | 20495442 | 20495302 | ID=Msa0539530-mRNA-1:cds;Parent=Msa0539530-mRNA-1 |
| chr4_1 | CDS | 20496018 | 20496196 | 20496018 | ID=Msa0539530-mRNA-1:cds;Parent=Msa0539530-mRNA-1 |
| chr4_1 | CDS | 20496492 | 20496561 | 20496492 | ID=Msa0539530-mRNA-1:cds;Parent=Msa0539530-mRNA-1 |
| chr4_1 | CDS | 20497354 | 20497477 | 20497354 | ID=Msa0539530-mRNA-1:cds;Parent=Msa0539530-mRNA-1 |
| chr4_1 | CDS | 20497525 | 20497636 | 20497525 | ID=Msa0539530-mRNA-1:cds;Parent=Msa0539530-mRNA-1 |
| chr4_1 | three_prime_UTR | 20497637 | 20497810 | 20497637 | ID=Msa0539530-mRNA-1:three_prime_utr;Parent=Msa0539530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
