AlfalfaGEDB | Msa0903620

M. sativa cultivar zhongmu-4 / Msa0903620

KEGG: K11644
GO: GO:0000118 GO:0000122 GO:0000785 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0035601 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0098732 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
PFAM: PF02671.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0903620	KEH24936.1	82.385	369	48	2	33	401	54	405	0.0	611

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0903620	sp\|Q9LFQ3\|SNL2_ARATH	49.552	335	118	7	66	351	144	476	2.65e-83	280
Msa0903620	sp\|Q9LFQ3\|SNL2_ARATH	46.667	120	44	4	2	120	14	114	4.54e-13	74.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa0903620	TR	Others

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003890	Msa0903620	0.801922	7.163417e-49	-8.615850e-47
Msa0011660	Msa0903620	-0.842529	2.445637e-58	-8.615850e-47
Msa0015390	Msa0903620	0.828587	8.273014e-55	-8.615850e-47
Msa0017510	Msa0903620	0.815449	9.194556e-52	-8.615850e-47
Msa0042920	Msa0903620	0.813004	3.187184e-51	-8.615850e-47
Msa0050390	Msa0903620	0.815655	8.270174e-52	-8.615850e-47
Msa0061880	Msa0903620	0.814104	1.826347e-51	-8.615850e-47
Msa0078900	Msa0903620	0.800834	1.196692e-48	-8.615850e-47
Msa0115270	Msa0903620	0.816218	6.192598e-52	-8.615850e-47
Msa0147250	Msa0903620	0.803453	3.461919e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0903620	MtrunA17_Chr6g0452021	82.385	369	48	2	33	401	117	468	0.0	611
Msa0903620	MtrunA17_Chr6g0452021	37.097	310	102	10	1	308	1	219	7.75e-23	100
Msa0903620	MtrunA17_Chr6g0452001	66.269	335	57	5	66	351	157	484	3.64e-131	409
Msa0903620	MtrunA17_Chr6g0452001	46.032	126	46	2	2	120	15	125	1.33e-14	76.3
Msa0903620	MtrunA17_Chr8g0364231	37.669	369	141	8	66	349	136	500	1.10e-55	198
Msa0903620	MtrunA17_Chr8g0364231	36.134	119	49	3	2	120	13	104	3.24e-11	65.5
Msa0903620	MtrunA17_Chr5g0415031	34.840	376	159	8	57	351	128	498	5.85e-45	167
Msa0903620	MtrunA17_Chr8g0362641	37.302	126	75	1	161	282	64	189	5.84e-18	83.6
Msa0903620	MtrunA17_Chr8g0362641	38.298	94	58	0	204	297	192	285	2.29e-14	73.2
Msa0903620	MtrunA17_Chr7g0218901	43.636	55	31	0	66	120	1	55	8.01e-12	60.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0903620	AT5G15020.2	49.552	335	118	7	66	351	144	476	1.69e-84	281
Msa0903620	AT5G15020.2	46.667	120	44	4	2	120	14	114	4.37e-14	75.1
Msa0903620	AT5G15020.1	49.552	335	118	7	66	351	144	476	2.70e-84	280
Msa0903620	AT5G15020.1	46.667	120	44	4	2	120	14	114	4.61e-14	74.7
Msa0903620	AT3G01320.1	49.550	333	120	9	66	351	150	481	4.01e-81	271
Msa0903620	AT3G01320.1	37.190	121	59	2	2	120	14	119	8.63e-13	70.9
Msa0903620	AT3G01320.2	47.447	333	115	10	66	351	150	469	6.84e-75	254
Msa0903620	AT3G01320.2	37.190	121	59	2	2	120	14	119	9.50e-13	70.9
Msa0903620	AT1G24190.2	37.462	331	156	10	66	349	108	434	2.24e-52	189
Msa0903620	AT1G24190.3	37.462	331	156	10	66	349	108	434	2.66e-52	188

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Find 91 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAATGATTTACAAAATA+TGG	0.232835	6_2:-858811	Msa0903620:intron
AAAGTATGACATGTTCCTTC+AGG	0.383357	6_2:-860638	Msa0903620:intron
AAATGACCATCAGTAGCGAG+TGG	0.680516	6_2:+858257	None:intergenic
AACAATGTTTGCCGACGCTA+AGG	0.513153	6_2:+858114	None:intergenic
AACATACAAGGAGAAATACA+TGG	0.576965	6_2:-858159	Msa0903620:CDS
AACGTGAGATCAGGGATATA+AGG	0.446943	6_2:-859827	Msa0903620:CDS
AAGCTTTGGTTGACATGTCA+TGG	0.530565	6_2:-857668	Msa0903620:three_prime_UTR
AAGTTTATGTGCGAAAGTTA+AGG	0.441373	6_2:-858907	Msa0903620:CDS
AATCAAGGTTGATGTGGACC+GGG	0.601806	6_2:+857645	None:intergenic
AATCACTATGGTCCTTAAAA+AGG	0.198941	6_2:+859994	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGGAGTGAAACACAAAAT+AGG	+	chr6_2:857746-857765	None:intergenic	30.0%
CAACAGTGAAACACAAAATT+AGG	+	chr6_2:857779-857798	None:intergenic	30.0%
ATTGAACACTACAAGTGAAA+AGG	+	chr6_2:857820-857839	None:intergenic	30.0%
TCAACATTACTCGTATTACT+TGG	+	chr6_2:858070-858089	None:intergenic	30.0%
ACAAGAGTTCATAATATTCC+AGG	+	chr6_2:858157-858176	None:intergenic	30.0%
CTTGTTCGTTGTTGATATTT+CGG	-	chr6_2:858313-858332	Msa0903620:intron	30.0%
GAACATTGTACTTACAATCA+AGG	-	chr6_2:858605-858624	Msa0903620:intron	30.0%
CAAATTTACCAATTACAGCT+AGG	+	chr6_2:858894-858913	None:intergenic	30.0%
GCATGTTTACAAATCATTCT+TGG	-	chr6_2:858944-858963	Msa0903620:intron	30.0%
ATCACTATGGTCCTTAAAAA+GGG	+	chr6_2:859155-859174	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_2	gene	857640	861529	857640	ID=Msa0903620;Name=Msa0903620
chr6_2	mRNA	857640	861529	857640	ID=Msa0903620-mRNA-1;Parent=Msa0903620;Name=Msa0903620-mRNA-1;_AED=0.16;_eAED=0.16;_QI=2\|0.37\|0.22\|0.88\|0.87\|0.88\|9\|148\|405
chr6_2	exon	857640	857947	857640	ID=Msa0903620-mRNA-1:exon:392;Parent=Msa0903620-mRNA-1
chr6_2	exon	858080	858281	858080	ID=Msa0903620-mRNA-1:exon:391;Parent=Msa0903620-mRNA-1
chr6_2	exon	858428	858457	858428	ID=Msa0903620-mRNA-1:exon:390;Parent=Msa0903620-mRNA-1
chr6_2	exon	858544	858619	858544	ID=Msa0903620-mRNA-1:exon:389;Parent=Msa0903620-mRNA-1
chr6_2	exon	858812	858948	858812	ID=Msa0903620-mRNA-1:exon:388;Parent=Msa0903620-mRNA-1
chr6_2	exon	859712	860024	859712	ID=Msa0903620-mRNA-1:exon:387;Parent=Msa0903620-mRNA-1
chr6_2	exon	860147	860245	860147	ID=Msa0903620-mRNA-1:exon:386;Parent=Msa0903620-mRNA-1
chr6_2	exon	860639	860798	860639	ID=Msa0903620-mRNA-1:exon:385;Parent=Msa0903620-mRNA-1
chr6_2	exon	861487	861529	861487	ID=Msa0903620-mRNA-1:exon:384;Parent=Msa0903620-mRNA-1
chr6_2	five_prime_UTR	861528	861529	861528	ID=Msa0903620-mRNA-1:five_prime_utr;Parent=Msa0903620-mRNA-1
chr6_2	CDS	861487	861527	861487	ID=Msa0903620-mRNA-1:cds;Parent=Msa0903620-mRNA-1
chr6_2	CDS	860639	860798	860639	ID=Msa0903620-mRNA-1:cds;Parent=Msa0903620-mRNA-1
chr6_2	CDS	860147	860245	860147	ID=Msa0903620-mRNA-1:cds;Parent=Msa0903620-mRNA-1
chr6_2	CDS	859712	860024	859712	ID=Msa0903620-mRNA-1:cds;Parent=Msa0903620-mRNA-1
chr6_2	CDS	858812	858948	858812	ID=Msa0903620-mRNA-1:cds;Parent=Msa0903620-mRNA-1
chr6_2	CDS	858544	858619	858544	ID=Msa0903620-mRNA-1:cds;Parent=Msa0903620-mRNA-1
chr6_2	CDS	858428	858457	858428	ID=Msa0903620-mRNA-1:cds;Parent=Msa0903620-mRNA-1
chr6_2	CDS	858080	858281	858080	ID=Msa0903620-mRNA-1:cds;Parent=Msa0903620-mRNA-1
chr6_2	CDS	857788	857947	857788	ID=Msa0903620-mRNA-1:cds;Parent=Msa0903620-mRNA-1
chr6_2	three_prime_UTR	857640	857787	857640	ID=Msa0903620-mRNA-1:three_prime_utr;Parent=Msa0903620-mRNA-1

Gene Sequence

>Msa0903620

ATGAAATTCAAACGTCCCATAGGTTCATCAAGAGCTGAATCCTCTGAAAATGGAGGTGGCAGTGGTGAAGGCGGAGTTGTTAATGGCGGTGGAGGTGCAAGTACTCCCAGGAAGCTGACAACCATTGATGCTTTATCTTATTTGAAGGAAGTGAAAAACACGTTTCCGGATCAAAAAGAAAAGTATGACATGTTCCTTCAGCAACAATTCCAAAATGACGAGCATGTTTACAAATCATTCTTGGACATTTTGAATATGTATCGCAAAGAACACAAGACCATTACTGAGGTTTACAGTGAGGTTGCTACCCTTTTTAAGGACCATAGTGATTTGCTTGAGGAGTTCACTAGATTCTTACCAGATAATTCGCTAGAACCTTCCACTCAACATGCTCCATTTGGTCATCGTGATATGAGTGTTGAACATCCTGATCTGGATGACGACGAAACAATGAACTTGCGCAAGGAGCAAAGGAAACGTGAGATCAGGGATATAAGGAAACGTGATTTGAACTCACTACGCTCTCCTAACAAAAAGAAATCTGTTAAGAAGGCTGAAGCTAATGGATTGTCTTCTGACTTAGCTTCTCATGATGATAAAGATGCGTTAAAGATCATGTATAGTCAAGCGTTAAGTTTATGTGCGAAAGTTAAGGAGAGGTTGAGCAGCGCTGAGGACTACCAAACATTCTTGAAGTGCCTTCATGATTTTAGCAATGGAATAATAAAAAAGAATGATTTACAAAATATGGTGACTGATTTACTTGGAAAGCATTCTGATCTCATGAGCGAATTCAATGATTATTTGGAGCGTTGTGAAAATACTGACGGGTTTCTTGCTGGTGTCGCGAGTGAAAAGCCACTCGCTACTGATGGTCATTTATCGGAATCATCCAAGGTGGAGGACGACGAAGACAAAGAACCCAAGCGTGAGATGGATGGATGTGAAGAGAAAGAAACATACAAGGAGAAATACATGGGAAAATCCATTCAAGAACTTGACCTTAGCGTCGGCAAACATTGTTCTCCGGGCTACCAGCTTCTACCTACTGACGACAGGCCTAAGCTGGACATTGTTATACACATTGCGCGCGGTGACAAGTCAGCCGTCGCAGGTTGCAGCGGTCGTAGCCAGCAATCACTGTGGAGGCAGTGCGCATGGATTGGTCTTCTAATTATTATCTATTTATTTTTCTTTTATTTAATTTTAATTTTTTGA

Protein sequence

>Msa0903620

MKFKRPIGSSRAESSENGGGSGEGGVVNGGGGASTPRKLTTIDALSYLKEVKNTFPDQKEKYDMFLQQQFQNDEHVYKSFLDILNMYRKEHKTITEVYSEVATLFKDHSDLLEEFTRFLPDNSLEPSTQHAPFGHRDMSVEHPDLDDDETMNLRKEQRKREIRDIRKRDLNSLRSPNKKKSVKKAEANGLSSDLASHDDKDALKIMYSQALSLCAKVKERLSSAEDYQTFLKCLHDFSNGIIKKNDLQNMVTDLLGKHSDLMSEFNDYLERCENTDGFLAGVASEKPLATDGHLSESSKVEDDEDKEPKREMDGCEEKETYKEKYMGKSIQELDLSVGKHCSPGYQLLPTDDRPKLDIVIHIARGDKSAVAGCSGRSQQSLWRQCAWIGLLIIIYLFFFYLILIF*