Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0903620 | KEH24936.1 | 82.385 | 369 | 48 | 2 | 33 | 401 | 54 | 405 | 0.0 | 611 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0903620 | sp|Q9LFQ3|SNL2_ARATH | 49.552 | 335 | 118 | 7 | 66 | 351 | 144 | 476 | 2.65e-83 | 280 |
| Msa0903620 | sp|Q9LFQ3|SNL2_ARATH | 46.667 | 120 | 44 | 4 | 2 | 120 | 14 | 114 | 4.54e-13 | 74.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0903620 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003890 | Msa0903620 | 0.801922 | 7.163417e-49 | -8.615850e-47 |
| Msa0011660 | Msa0903620 | -0.842529 | 2.445637e-58 | -8.615850e-47 |
| Msa0015390 | Msa0903620 | 0.828587 | 8.273014e-55 | -8.615850e-47 |
| Msa0017510 | Msa0903620 | 0.815449 | 9.194556e-52 | -8.615850e-47 |
| Msa0042920 | Msa0903620 | 0.813004 | 3.187184e-51 | -8.615850e-47 |
| Msa0050390 | Msa0903620 | 0.815655 | 8.270174e-52 | -8.615850e-47 |
| Msa0061880 | Msa0903620 | 0.814104 | 1.826347e-51 | -8.615850e-47 |
| Msa0078900 | Msa0903620 | 0.800834 | 1.196692e-48 | -8.615850e-47 |
| Msa0115270 | Msa0903620 | 0.816218 | 6.192598e-52 | -8.615850e-47 |
| Msa0602980 | Msa0903620 | 0.803972 | 2.700791e-49 | -8.615850e-47 |
| Msa0659400 | Msa0903620 | 0.800294 | 1.541688e-48 | -8.615850e-47 |
| Msa0663380 | Msa0903620 | 0.814724 | 1.331644e-51 | -8.615850e-47 |
| Msa0679290 | Msa0903620 | -0.811238 | 7.737603e-51 | -8.615850e-47 |
| Msa0701010 | Msa0903620 | 0.831630 | 1.496743e-55 | -8.615850e-47 |
| Msa0703780 | Msa0903620 | 0.819094 | 1.391108e-52 | -8.615850e-47 |
| Msa0707250 | Msa0903620 | 0.803075 | 4.145207e-49 | -8.615850e-47 |
| Msa0731940 | Msa0903620 | 0.826889 | 2.117363e-54 | -8.615850e-47 |
| Msa0735170 | Msa0903620 | 0.801300 | 9.610804e-49 | -8.615850e-47 |
| Msa0745790 | Msa0903620 | 0.806581 | 7.674818e-50 | -8.615850e-47 |
| Msa0750650 | Msa0903620 | 0.801235 | 9.910414e-49 | -8.615850e-47 |
| Msa0756460 | Msa0903620 | 0.813197 | 2.891492e-51 | -8.615850e-47 |
| Msa0762970 | Msa0903620 | 0.814192 | 1.745895e-51 | -8.615850e-47 |
| Msa0768290 | Msa0903620 | 0.814508 | 1.486805e-51 | -8.615850e-47 |
| Msa0777570 | Msa0903620 | -0.802748 | 4.843157e-49 | -8.615850e-47 |
| Msa0784380 | Msa0903620 | 0.810461 | 1.139354e-50 | -8.615850e-47 |
| Msa0810220 | Msa0903620 | 0.807239 | 5.570648e-50 | -8.615850e-47 |
| Msa0820850 | Msa0903620 | 0.806908 | 6.544599e-50 | -8.615850e-47 |
| Msa0147250 | Msa0903620 | 0.803453 | 3.461919e-49 | -8.615850e-47 |
| Msa0150800 | Msa0903620 | 0.821666 | 3.576703e-53 | -8.615850e-47 |
| Msa0150840 | Msa0903620 | 0.870139 | 1.828249e-66 | -8.615850e-47 |
| Msa0157290 | Msa0903620 | 0.815942 | 7.136368e-52 | -8.615850e-47 |
| Msa0165210 | Msa0903620 | 0.812655 | 3.799964e-51 | -8.615850e-47 |
| Msa0166560 | Msa0903620 | 0.843168 | 1.653616e-58 | -8.615850e-47 |
| Msa0171540 | Msa0903620 | 0.815430 | 9.284496e-52 | -8.615850e-47 |
| Msa0180500 | Msa0903620 | 0.836519 | 8.925737e-57 | -8.615850e-47 |
| Msa0182680 | Msa0903620 | 0.802837 | 4.641101e-49 | -8.615850e-47 |
| Msa0212990 | Msa0903620 | 0.806277 | 8.892315e-50 | -8.615850e-47 |
| Msa0229380 | Msa0903620 | 0.812532 | 4.043957e-51 | -8.615850e-47 |
| Msa0236510 | Msa0903620 | -0.801168 | 1.022387e-48 | -8.615850e-47 |
| Msa0237230 | Msa0903620 | 0.802161 | 6.396810e-49 | -8.615850e-47 |
| Msa0367870 | Msa0903620 | 0.815132 | 1.081268e-51 | -8.615850e-47 |
| Msa0369050 | Msa0903620 | 0.807312 | 5.375725e-50 | -8.615850e-47 |
| Msa0388960 | Msa0903620 | 0.806445 | 8.196396e-50 | -8.615850e-47 |
| Msa0390400 | Msa0903620 | -0.802413 | 5.676968e-49 | -8.615850e-47 |
| Msa0395790 | Msa0903620 | 0.819472 | 1.141066e-52 | -8.615850e-47 |
| Msa0402790 | Msa0903620 | 0.800938 | 1.139670e-48 | -8.615850e-47 |
| Msa0406880 | Msa0903620 | 0.802718 | 4.910741e-49 | -8.615850e-47 |
| Msa0413410 | Msa0903620 | 0.820259 | 7.540741e-53 | -8.615850e-47 |
| Msa0416650 | Msa0903620 | 0.802923 | 4.455910e-49 | -8.615850e-47 |
| Msa0424320 | Msa0903620 | 0.812084 | 5.065888e-51 | -8.615850e-47 |
| Msa0435690 | Msa0903620 | 0.823468 | 1.362568e-53 | -8.615850e-47 |
| Msa0438200 | Msa0903620 | 0.832293 | 1.026974e-55 | -8.615850e-47 |
| Msa0466390 | Msa0903620 | 0.800952 | 1.132136e-48 | -8.615850e-47 |
| Msa0479660 | Msa0903620 | 0.821396 | 4.129654e-53 | -8.615850e-47 |
| Msa0244960 | Msa0903620 | 0.811010 | 8.671278e-51 | -8.615850e-47 |
| Msa0259210 | Msa0903620 | 0.810455 | 1.142712e-50 | -8.615850e-47 |
| Msa0264150 | Msa0903620 | 0.800511 | 1.392627e-48 | -8.615850e-47 |
| Msa0275000 | Msa0903620 | 0.810663 | 1.030555e-50 | -8.615850e-47 |
| Msa0275010 | Msa0903620 | 0.805197 | 1.499285e-49 | -8.615850e-47 |
| Msa0288100 | Msa0903620 | 0.818008 | 2.452865e-52 | -8.615850e-47 |
| Msa0300690 | Msa0903620 | 0.803245 | 3.822935e-49 | -8.615850e-47 |
| Msa0319170 | Msa0903620 | 0.820465 | 6.761476e-53 | -8.615850e-47 |
| Msa0321310 | Msa0903620 | 0.814488 | 1.501772e-51 | -8.615850e-47 |
| Msa0330340 | Msa0903620 | 0.807698 | 4.452164e-50 | -8.615850e-47 |
| Msa0336040 | Msa0903620 | -0.810184 | 1.307516e-50 | -8.615850e-47 |
| Msa0336320 | Msa0903620 | 0.819558 | 1.090359e-52 | -8.615850e-47 |
| Msa0340450 | Msa0903620 | 0.818768 | 1.649707e-52 | -8.615850e-47 |
| Msa0351030 | Msa0903620 | 0.803498 | 3.387941e-49 | -8.615850e-47 |
| Msa0359030 | Msa0903620 | 0.809735 | 1.633596e-50 | -8.615850e-47 |
| Msa0495330 | Msa0903620 | 0.824229 | 9.038562e-54 | -8.615850e-47 |
| Msa0498650 | Msa0903620 | 0.800039 | 1.737105e-48 | -8.615850e-47 |
| Msa0512750 | Msa0903620 | 0.810706 | 1.008544e-50 | -8.615850e-47 |
| Msa0519000 | Msa0903620 | 0.818203 | 2.215879e-52 | -8.615850e-47 |
| Msa0523940 | Msa0903620 | 0.810628 | 1.048749e-50 | -8.615850e-47 |
| Msa0529040 | Msa0903620 | 0.810824 | 9.512187e-51 | -8.615850e-47 |
| Msa0530400 | Msa0903620 | 0.814646 | 1.385532e-51 | -8.615850e-47 |
| Msa0532990 | Msa0903620 | 0.827594 | 1.435151e-54 | -8.615850e-47 |
| Msa0545700 | Msa0903620 | 0.814295 | 1.656674e-51 | -8.615850e-47 |
| Msa0547320 | Msa0903620 | 0.812502 | 4.105951e-51 | -8.615850e-47 |
| Msa0548150 | Msa0903620 | 0.803626 | 3.186554e-49 | -8.615850e-47 |
| Msa0585230 | Msa0903620 | 0.819973 | 8.766331e-53 | -8.615850e-47 |
| Msa0844410 | Msa0903620 | 0.833659 | 4.698025e-56 | -8.615850e-47 |
| Msa0844420 | Msa0903620 | 0.827890 | 1.218757e-54 | -8.615850e-47 |
| Msa0844440 | Msa0903620 | 0.803844 | 2.871284e-49 | -8.615850e-47 |
| Msa0844450 | Msa0903620 | 0.840462 | 8.568316e-58 | -8.615850e-47 |
| Msa0844470 | Msa0903620 | 0.839264 | 1.758569e-57 | -8.615850e-47 |
| Msa0844490 | Msa0903620 | 0.856393 | 3.315779e-62 | -8.615850e-47 |
| Msa0849030 | Msa0903620 | 0.812279 | 4.591436e-51 | -8.615850e-47 |
| Msa0857640 | Msa0903620 | 0.840685 | 7.493530e-58 | -8.615850e-47 |
| Msa0861130 | Msa0903620 | 0.805554 | 1.262338e-49 | -8.615850e-47 |
| Msa0871270 | Msa0903620 | 0.800762 | 1.238000e-48 | -8.615850e-47 |
| Msa0876580 | Msa0903620 | 0.804239 | 2.376800e-49 | -8.615850e-47 |
| Msa0877250 | Msa0903620 | 0.813031 | 3.144780e-51 | -8.615850e-47 |
| Msa0880140 | Msa0903620 | 0.809806 | 1.576941e-50 | -8.615850e-47 |
| Msa0897330 | Msa0903620 | 0.808172 | 3.529875e-50 | -8.615850e-47 |
| Msa0903620 | Msa0927380 | 0.809042 | 2.300090e-50 | -8.615850e-47 |
| Msa0903620 | Msa0934890 | 0.806603 | 7.591151e-50 | -8.615850e-47 |
| Msa0903620 | Msa0936300 | 0.938279 | 8.751660e-99 | -8.615850e-47 |
| Msa0903620 | Msa0938220 | 0.800970 | 1.122261e-48 | -8.615850e-47 |
| Msa0903620 | Msa0947660 | 0.810177 | 1.312465e-50 | -8.615850e-47 |
| Msa0903620 | Msa0948320 | 0.809847 | 1.545237e-50 | -8.615850e-47 |
| Msa0903620 | Msa0953120 | 0.802152 | 6.425379e-49 | -8.615850e-47 |
| Msa0903620 | Msa0960740 | 0.803001 | 4.292442e-49 | -8.615850e-47 |
| Msa0903620 | Msa0962840 | 0.802738 | 4.864932e-49 | -8.615850e-47 |
| Msa0903620 | Msa0966750 | 0.827176 | 1.808045e-54 | -8.615850e-47 |
| Msa0903620 | Msa0969520 | 0.825678 | 4.111698e-54 | -8.615850e-47 |
| Msa0903620 | Msa0969810 | 0.819409 | 1.179496e-52 | -8.615850e-47 |
| Msa0903620 | Msa0973100 | 0.917825 | 3.309263e-86 | -8.615850e-47 |
| Msa0903620 | Msa0974070 | 0.811876 | 5.622883e-51 | -8.615850e-47 |
| Msa0903620 | Msa0974080 | 0.818770 | 1.648304e-52 | -8.615850e-47 |
| Msa0903620 | Msa0998690 | 0.804881 | 1.746091e-49 | -8.615850e-47 |
| Msa0903620 | Msa1000890 | 0.817078 | 3.973725e-52 | -8.615850e-47 |
| Msa0903620 | Msa1000900 | 0.816856 | 4.456115e-52 | -8.615850e-47 |
| Msa0903620 | Msa1000930 | 0.810717 | 1.003084e-50 | -8.615850e-47 |
| Msa0903620 | Msa1001390 | 0.809896 | 1.508710e-50 | -8.615850e-47 |
| Msa0903620 | Msa1002850 | 0.810451 | 1.145367e-50 | -8.615850e-47 |
| Msa0903620 | Msa1014540 | 0.821517 | 3.871107e-53 | -8.615850e-47 |
| Msa0903620 | Msa1030970 | 0.816564 | 5.183141e-52 | -8.615850e-47 |
| Msa0903620 | Msa1054150 | -0.807898 | 4.037099e-50 | -8.615850e-47 |
| Msa0903620 | Msa1063510 | 0.803188 | 3.927878e-49 | -8.615850e-47 |
| Msa0903620 | Msa1064250 | 0.801213 | 1.001007e-48 | -8.615850e-47 |
| Msa0903620 | Msa1064710 | 0.812449 | 4.215760e-51 | -8.615850e-47 |
| Msa0903620 | Msa1075220 | -0.805739 | 1.154122e-49 | -8.615850e-47 |
| Msa0903620 | Msa1075540 | 0.826482 | 2.648164e-54 | -8.615850e-47 |
| Msa0903620 | Msa1100050 | 0.810155 | 1.326788e-50 | -8.615850e-47 |
| Msa0903620 | Msa1109680 | 0.807191 | 5.702148e-50 | -8.615850e-47 |
| Msa0903620 | Msa1111870 | 0.824916 | 6.226585e-54 | -8.615850e-47 |
| Msa0903620 | Msa1113170 | 0.808761 | 2.642003e-50 | -8.615850e-47 |
| Msa0903620 | Msa1115100 | 0.811381 | 7.204250e-51 | -8.615850e-47 |
| Msa0903620 | Msa1119480 | 0.810514 | 1.110082e-50 | -8.615850e-47 |
| Msa0903620 | Msa1121480 | 0.803983 | 2.686869e-49 | -8.615850e-47 |
| Msa0903620 | Msa1121490 | 0.848246 | 6.926985e-60 | -8.615850e-47 |
| Msa0903620 | Msa1124410 | 0.800088 | 1.697895e-48 | -8.615850e-47 |
| Msa0903620 | Msa1137570 | 0.821280 | 4.391954e-53 | -8.615850e-47 |
| Msa0903620 | Msa1142020 | 0.806752 | 7.060457e-50 | -8.615850e-47 |
| Msa0903620 | Msa1142670 | 0.812846 | 3.452680e-51 | -8.615850e-47 |
| Msa0903620 | Msa1151910 | 0.810438 | 1.152646e-50 | -8.615850e-47 |
| Msa0903620 | Msa1154280 | 0.841995 | 3.387545e-58 | -8.615850e-47 |
| Msa0903620 | Msa1162550 | -0.807025 | 6.183588e-50 | -8.615850e-47 |
| Msa0903620 | Msa1178180 | 0.839945 | 1.169473e-57 | -8.615850e-47 |
| Msa0903620 | Msa1193290 | 0.808027 | 3.789361e-50 | -8.615850e-47 |
| Msa0903620 | Msa1210020 | 0.821551 | 3.802114e-53 | -8.615850e-47 |
| Msa0903620 | Msa1211140 | -0.826155 | 3.168476e-54 | -8.615850e-47 |
| Msa0903620 | Msa1227730 | 0.816808 | 4.568141e-52 | -8.615850e-47 |
| Msa0903620 | Msa1238930 | 0.809503 | 1.832686e-50 | -8.615850e-47 |
| Msa0903620 | Msa1254730 | 0.808007 | 3.826804e-50 | -8.615850e-47 |
| Msa0903620 | Msa1259590 | -0.806906 | 6.553222e-50 | -8.615850e-47 |
| Msa0903620 | Msa1275360 | 0.830829 | 2.356182e-55 | -8.615850e-47 |
| Msa0903620 | Msa1275590 | 0.835316 | 1.801451e-56 | -8.615850e-47 |
| Msa0903620 | Msa1276890 | 0.805569 | 1.253238e-49 | -8.615850e-47 |
| Msa0903620 | Msa1284680 | 0.825982 | 3.483533e-54 | -8.615850e-47 |
| Msa0903620 | Msa1286800 | 0.863626 | 2.176671e-64 | -8.615850e-47 |
| Msa0903620 | Msa1287190 | 0.831306 | 1.799082e-55 | -8.615850e-47 |
| Msa0903620 | Msa1287220 | 0.804031 | 2.625978e-49 | -8.615850e-47 |
| Msa0903620 | Msa1294820 | 0.803386 | 3.574242e-49 | -8.615850e-47 |
| Msa0903620 | Msa1298510 | 0.828294 | 9.739628e-55 | -8.615850e-47 |
| Msa0903620 | Msa1299290 | -0.823494 | 1.344077e-53 | -8.615850e-47 |
| Msa0903620 | Msa1299300 | -0.803212 | 3.883511e-49 | -8.615850e-47 |
| Msa0903620 | Msa1345220 | 0.822811 | 1.939751e-53 | -8.615850e-47 |
| Msa0903620 | Msa1346370 | 0.800744 | 1.248525e-48 | -8.615850e-47 |
| Msa0903620 | Msa1353470 | 0.832002 | 1.211808e-55 | -8.615850e-47 |
| Msa0903620 | Msa1358670 | 0.829163 | 6.001971e-55 | -8.615850e-47 |
| Msa0903620 | Msa1359040 | 0.801478 | 8.833626e-49 | -8.615850e-47 |
| Msa0903620 | Msa1366970 | 0.800750 | 1.244802e-48 | -8.615850e-47 |
| Msa0903620 | Msa1390700 | 0.811082 | 8.362101e-51 | -8.615850e-47 |
| Msa0903620 | Msa1392910 | 0.809248 | 2.078292e-50 | -8.615850e-47 |
| Msa0903620 | Msa1394730 | 0.829034 | 6.450396e-55 | -8.615850e-47 |
| Msa0903620 | Msa1412530 | 0.806758 | 7.042100e-50 | -8.615850e-47 |
| Msa0903620 | Msa1420820 | 0.829907 | 3.958741e-55 | -8.615850e-47 |
| Msa0903620 | Msa1423880 | 0.802519 | 5.397493e-49 | -8.615850e-47 |
| Msa0903620 | Msa1430410 | 0.802526 | 5.380611e-49 | -8.615850e-47 |
| Msa0903620 | Msa1461300 | 0.807469 | 4.977784e-50 | -8.615850e-47 |
| Msa0903620 | Msa1466540 | 0.818189 | 2.231932e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0903620 | MtrunA17_Chr6g0452021 | 82.385 | 369 | 48 | 2 | 33 | 401 | 117 | 468 | 0.0 | 611 |
| Msa0903620 | MtrunA17_Chr6g0452021 | 37.097 | 310 | 102 | 10 | 1 | 308 | 1 | 219 | 7.75e-23 | 100 |
| Msa0903620 | MtrunA17_Chr6g0452001 | 66.269 | 335 | 57 | 5 | 66 | 351 | 157 | 484 | 3.64e-131 | 409 |
| Msa0903620 | MtrunA17_Chr6g0452001 | 46.032 | 126 | 46 | 2 | 2 | 120 | 15 | 125 | 1.33e-14 | 76.3 |
| Msa0903620 | MtrunA17_Chr8g0364231 | 37.669 | 369 | 141 | 8 | 66 | 349 | 136 | 500 | 1.10e-55 | 198 |
| Msa0903620 | MtrunA17_Chr8g0364231 | 36.134 | 119 | 49 | 3 | 2 | 120 | 13 | 104 | 3.24e-11 | 65.5 |
| Msa0903620 | MtrunA17_Chr5g0415031 | 34.840 | 376 | 159 | 8 | 57 | 351 | 128 | 498 | 5.85e-45 | 167 |
| Msa0903620 | MtrunA17_Chr8g0362641 | 37.302 | 126 | 75 | 1 | 161 | 282 | 64 | 189 | 5.84e-18 | 83.6 |
| Msa0903620 | MtrunA17_Chr8g0362641 | 38.298 | 94 | 58 | 0 | 204 | 297 | 192 | 285 | 2.29e-14 | 73.2 |
| Msa0903620 | MtrunA17_Chr7g0218901 | 43.636 | 55 | 31 | 0 | 66 | 120 | 1 | 55 | 8.01e-12 | 60.1 |
| Msa0903620 | MtrunA17_Chr5g0415081 | 42.667 | 75 | 30 | 1 | 46 | 120 | 23 | 84 | 1.96e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0903620 | AT5G15020.2 | 49.552 | 335 | 118 | 7 | 66 | 351 | 144 | 476 | 1.69e-84 | 281 |
| Msa0903620 | AT5G15020.2 | 46.667 | 120 | 44 | 4 | 2 | 120 | 14 | 114 | 4.37e-14 | 75.1 |
| Msa0903620 | AT5G15020.1 | 49.552 | 335 | 118 | 7 | 66 | 351 | 144 | 476 | 2.70e-84 | 280 |
| Msa0903620 | AT5G15020.1 | 46.667 | 120 | 44 | 4 | 2 | 120 | 14 | 114 | 4.61e-14 | 74.7 |
| Msa0903620 | AT3G01320.1 | 49.550 | 333 | 120 | 9 | 66 | 351 | 150 | 481 | 4.01e-81 | 271 |
| Msa0903620 | AT3G01320.1 | 37.190 | 121 | 59 | 2 | 2 | 120 | 14 | 119 | 8.63e-13 | 70.9 |
| Msa0903620 | AT3G01320.2 | 47.447 | 333 | 115 | 10 | 66 | 351 | 150 | 469 | 6.84e-75 | 254 |
| Msa0903620 | AT3G01320.2 | 37.190 | 121 | 59 | 2 | 2 | 120 | 14 | 119 | 9.50e-13 | 70.9 |
| Msa0903620 | AT1G24190.2 | 37.462 | 331 | 156 | 10 | 66 | 349 | 108 | 434 | 2.24e-52 | 189 |
| Msa0903620 | AT1G24190.3 | 37.462 | 331 | 156 | 10 | 66 | 349 | 108 | 434 | 2.66e-52 | 188 |
| Msa0903620 | AT1G24190.1 | 36.716 | 335 | 157 | 11 | 66 | 349 | 108 | 438 | 1.91e-49 | 180 |
| Msa0903620 | AT1G70060.2 | 35.549 | 346 | 159 | 9 | 66 | 349 | 109 | 452 | 4.16e-46 | 170 |
| Msa0903620 | AT1G70060.1 | 35.549 | 346 | 159 | 9 | 66 | 349 | 109 | 452 | 4.16e-46 | 170 |
| Msa0903620 | AT1G24200.1 | 47.826 | 92 | 47 | 1 | 66 | 156 | 105 | 196 | 1.30e-16 | 78.2 |
| Msa0903620 | AT1G10450.3 | 55.556 | 72 | 31 | 1 | 66 | 136 | 176 | 247 | 4.12e-16 | 81.3 |
| Msa0903620 | AT1G10450.2 | 55.556 | 72 | 31 | 1 | 66 | 136 | 125 | 196 | 4.17e-16 | 81.3 |
| Msa0903620 | AT1G10450.1 | 55.556 | 72 | 31 | 1 | 66 | 136 | 125 | 196 | 4.17e-16 | 81.3 |
| Msa0903620 | AT1G59890.2 | 62.500 | 56 | 21 | 0 | 66 | 121 | 137 | 192 | 9.00e-15 | 77.0 |
| Msa0903620 | AT1G59890.3 | 62.500 | 56 | 21 | 0 | 66 | 121 | 137 | 192 | 9.14e-15 | 77.0 |
| Msa0903620 | AT1G59890.1 | 62.500 | 56 | 21 | 0 | 66 | 121 | 137 | 192 | 9.23e-15 | 77.0 |
| Msa0903620 | AT1G59890.4 | 62.500 | 56 | 21 | 0 | 66 | 121 | 137 | 192 | 9.62e-15 | 77.0 |
| Msa0903620 | AT1G70030.1 | 50.909 | 55 | 26 | 1 | 66 | 120 | 104 | 157 | 8.92e-11 | 60.5 |
Find 91 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGCGAATTCAATGATTATT+TGG | 0.184994 | 6_2:-858562 | Msa0903620:CDS |
| AATCACTATGGTCCTTAAAA+AGG | 0.198941 | 6_2:+859994 | None:intergenic |
| TGTAAACATGCTCGTCATTT+TGG | 0.199549 | 6_2:+860215 | None:intergenic |
| AAAGAATGATTTACAAAATA+TGG | 0.232835 | 6_2:-858811 | Msa0903620:intron |
| GCATGTTTACAAATCATTCT+TGG | 0.291056 | 6_2:-860203 | Msa0903620:CDS |
| TGTCTATGAAGCTCTGAAAA+TGG | 0.297142 | 6_2:-860787 | Msa0903620:intron |
| ATCAATGGTTGTCAGCTTCC+TGG | 0.311201 | 6_2:+860711 | None:intergenic |
| GGTGAAGGCGGAGTTGTTAA+TGG | 0.335717 | 6_2:-860754 | Msa0903620:CDS |
| CGCTACTGATGGTCATTTAT+CGG | 0.366830 | 6_2:-858252 | Msa0903620:CDS |
| AGCAAAGGAAACGTGAGATC+AGG | 0.374268 | 6_2:-859836 | Msa0903620:CDS |
| GTAGACATCTATATAAGCTT+TGG | 0.376047 | 6_2:-857682 | Msa0903620:three_prime_UTR |
| AAAGTATGACATGTTCCTTC+AGG | 0.383357 | 6_2:-860638 | Msa0903620:intron |
| TTGGAGCGTTGTGAAAATAC+TGG | 0.388042 | 6_2:-858543 | Msa0903620:intron |
| GAAGGCACTTCAAGAATGTT+TGG | 0.395784 | 6_2:+858859 | None:intergenic |
| TTTGCAGACGGGTTTCTTGC+TGG | 0.396888 | 6_2:-858442 | Msa0903620:intron |
| ACTGCCTCCACAGTGATTGC+TGG | 0.397139 | 6_2:+857853 | None:intergenic |
| TCCACTCAACATGCTCCATT+TGG | 0.397490 | 6_2:-859924 | Msa0903620:CDS |
| TTCAGCTCTTGATGAACCTA+TGG | 0.406832 | 6_2:+861489 | None:intergenic |
| ACATCCATCCATCTCACGCT+TGG | 0.419117 | 6_2:+858193 | None:intergenic |
| GTTAAGAAGGCTGAAGCTAA+TGG | 0.427895 | 6_2:-859759 | Msa0903620:CDS |
| GAAGGTTCTAGCGAATTATC+TGG | 0.439247 | 6_2:+859945 | None:intergenic |
| AAGTTTATGTGCGAAAGTTA+AGG | 0.441373 | 6_2:-858907 | Msa0903620:CDS |
| TGATGCTTTATCTTATTTGA+AGG | 0.444496 | 6_2:-860692 | Msa0903620:CDS |
| AACGTGAGATCAGGGATATA+AGG | 0.446943 | 6_2:-859827 | Msa0903620:CDS |
| CATCCATCCATCTCACGCTT+GGG | 0.450025 | 6_2:+858194 | None:intergenic |
| TTTCAGGTGACTGATTTACT+TGG | 0.452643 | 6_2:-858603 | Msa0903620:intron |
| CGTCGGCAAACATTGTTCTC+CGG | 0.456875 | 6_2:-858108 | Msa0903620:CDS |
| CAAATAAGATAAAGCATCAA+TGG | 0.460162 | 6_2:+860696 | None:intergenic |
| TTTCTGATGTAGGCCTAAGC+TGG | 0.463724 | 6_2:-857937 | Msa0903620:intron |
| GCTAAGGTCAAGTTCTTGAA+TGG | 0.463830 | 6_2:+858130 | None:intergenic |
| TCAATGGTTGTCAGCTTCCT+GGG | 0.471642 | 6_2:+860712 | None:intergenic |
| GGCGGAGTTGTTAATGGCGG+TGG | 0.478168 | 6_2:-860748 | Msa0903620:CDS |
| GTTTCGTCGTCATCCAGATC+AGG | 0.486043 | 6_2:+859876 | None:intergenic |
| CACTGTGGAGGCAGTGCGCA+TGG | 0.497019 | 6_2:-857845 | Msa0903620:CDS |
| TAATCAAGGTTGATGTGGAC+CGG | 0.497152 | 6_2:+857644 | None:intergenic |
| GAGTGTTGAACATCCTGATC+TGG | 0.500938 | 6_2:-859889 | Msa0903620:CDS |
| GTCTTCGTCGTCCTCCACCT+TGG | 0.506749 | 6_2:+858223 | None:intergenic |
| GGAGTTGTTAATGGCGGTGG+AGG | 0.509313 | 6_2:-860745 | Msa0903620:CDS |
| GTCGGCAAACATTGTTCTCC+GGG | 0.512223 | 6_2:-858107 | Msa0903620:CDS |
| AACAATGTTTGCCGACGCTA+AGG | 0.513153 | 6_2:+858114 | None:intergenic |
| TTCCATTGCTAAAATCATGA+AGG | 0.516038 | 6_2:+858841 | None:intergenic |
| CTCATATCACGATGACCAAA+TGG | 0.517549 | 6_2:+859909 | None:intergenic |
| TTGGTTGACATGTCATGGCC+CGG | 0.518450 | 6_2:-857663 | Msa0903620:three_prime_UTR |
| GGTGACAAGTCAGCCGTCGC+AGG | 0.523912 | 6_2:-857891 | Msa0903620:CDS |
| CAAAGAACCCAAGCGTGAGA+TGG | 0.525550 | 6_2:-858201 | Msa0903620:CDS |
| AATGGAGGTGGCAGTGGTGA+AGG | 0.528583 | 6_2:-860769 | Msa0903620:CDS |
| GTAGGTAGAAGCTGGTAGCC+CGG | 0.528926 | 6_2:+858089 | None:intergenic |
| AAGCTTTGGTTGACATGTCA+TGG | 0.530565 | 6_2:-857668 | Msa0903620:three_prime_UTR |
| GAACCCAAGCGTGAGATGGA+TGG | 0.540388 | 6_2:-858197 | Msa0903620:CDS |
| TGGAGGCAGTGCGCATGGAT+TGG | 0.542075 | 6_2:-857840 | Msa0903620:CDS |
| TTGTAATCAACAGCTAATCA+AGG | 0.552289 | 6_2:+857630 | None:intergenic |
| ATGAAATTCAAACGTCCCAT+AGG | 0.555970 | 6_2:-861505 | Msa0903620:CDS |
| ACTCCTCAAGCAAATCACTA+TGG | 0.556751 | 6_2:+859982 | None:intergenic |
| TCTGAAAATGGAGGTGGCAG+TGG | 0.559504 | 6_2:-860775 | Msa0903620:CDS |
| GCAAAGGAAACGTGAGATCA+GGG | 0.565159 | 6_2:-859835 | Msa0903620:CDS |
| TGAACTTGCGCAAGGAGCAA+AGG | 0.568728 | 6_2:-859851 | Msa0903620:CDS |
| GGACCATAGTGATTTGCTTG+AGG | 0.570203 | 6_2:-859985 | Msa0903620:CDS |
| AATGGAGCATGTTGAGTGGA+AGG | 0.571335 | 6_2:+859927 | None:intergenic |
| TGTCGTCAGTAGGTAGAAGC+TGG | 0.571961 | 6_2:+858081 | None:intergenic |
| TCAGCCGTCGCAGGTTGCAG+CGG | 0.572026 | 6_2:-857882 | Msa0903620:CDS |
| ATCGGAATCATCCAAGGTGG+AGG | 0.575755 | 6_2:-858234 | Msa0903620:CDS |
| TATGTGCGAAAGTTAAGGAG+AGG | 0.576086 | 6_2:-858902 | Msa0903620:CDS |
| AACATACAAGGAGAAATACA+TGG | 0.576965 | 6_2:-858159 | Msa0903620:CDS |
| GTGGAGGTGCAAGTACTCCC+AGG | 0.577879 | 6_2:-860729 | Msa0903620:CDS |
| CTCACTGTAAACCTCAGTAA+TGG | 0.592350 | 6_2:+860147 | None:intergenic |
| TGTATAACAATGTCCAGCTT+AGG | 0.593330 | 6_2:+857924 | None:intergenic |
| TGAAGCTCTGAAAATGGAGG+TGG | 0.595249 | 6_2:-860781 | Msa0903620:intron |
| TCAGAGCCACTCGCTACTGA+TGG | 0.597556 | 6_2:-858263 | Msa0903620:intron |
| AGCTTCTACCTACTGACGAC+AGG | 0.599591 | 6_2:-858079 | Msa0903620:intron |
| AATCAAGGTTGATGTGGACC+GGG | 0.601806 | 6_2:+857645 | None:intergenic |
| CAAGAACTTGACCTTAGCGT+CGG | 0.605982 | 6_2:-858125 | Msa0903620:CDS |
| TCAGCTCTTGATGAACCTAT+GGG | 0.606675 | 6_2:+861490 | None:intergenic |
| CGAAACAATGAACTTGCGCA+AGG | 0.607776 | 6_2:-859859 | Msa0903620:CDS |
| ATTTAAATGATATAATGATG+TGG | 0.608342 | 6_2:-857712 | Msa0903620:three_prime_UTR |
| ACAGCTAATCAAGGTTGATG+TGG | 0.611115 | 6_2:+857639 | None:intergenic |
| TCATTTATCGGAATCATCCA+AGG | 0.613554 | 6_2:-858240 | Msa0903620:CDS |
| ACGACCGCTGCAACCTGCGA+CGG | 0.621416 | 6_2:+857878 | None:intergenic |
| GGAGGTGGCAGTGGTGAAGG+CGG | 0.626047 | 6_2:-860766 | Msa0903620:CDS |
| ACCAAATGGAGCATGTTGAG+TGG | 0.630081 | 6_2:+859923 | None:intergenic |
| TGAAGAGAAAGAAACATACA+AGG | 0.631772 | 6_2:-858171 | Msa0903620:CDS |
| GGAGAGGTTGAGCAGCGCTG+AGG | 0.647893 | 6_2:-858886 | Msa0903620:CDS |
| GTAGCCAGCAATCACTGTGG+AGG | 0.664908 | 6_2:-857857 | Msa0903620:CDS |
| ACATACAAGGAGAAATACAT+GGG | 0.670004 | 6_2:-858158 | Msa0903620:CDS |
| AAATGACCATCAGTAGCGAG+TGG | 0.680516 | 6_2:+858257 | None:intergenic |
| CATTACTGAGGTTTACAGTG+AGG | 0.688498 | 6_2:-860146 | Msa0903620:intron |
| AGAACACAAGACCATTACTG+AGG | 0.690770 | 6_2:-860158 | Msa0903620:CDS |
| CTATGAAGCTCTGAAAATGG+AGG | 0.696567 | 6_2:-860784 | Msa0903620:intron |
| TTTATCGGAATCATCCAAGG+TGG | 0.715628 | 6_2:-858237 | Msa0903620:CDS |
| GAAGGCGGAGTTGTTAATGG+CGG | 0.720318 | 6_2:-860751 | Msa0903620:CDS |
| ATTGTTATACACATTGCGCG+CGG | 0.726992 | 6_2:-857912 | Msa0903620:CDS |
| GTCGTAGCCAGCAATCACTG+TGG | 0.732284 | 6_2:-857860 | Msa0903620:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTCTTTAAAAAATGTTT+TGG | - | chr6_2:859072-859091 | Msa0903620:intron | 10.0% |
| !!! | TAAATAACAAATTTTAGAAT+TGG | + | chr6_2:860178-860197 | None:intergenic | 10.0% |
| !! | GAAAAAAATAAATAAAACCT+AGG | + | chr6_2:857957-857976 | None:intergenic | 15.0% |
| !!! | TTTTTTTCTATTTGAAAACT+CGG | - | chr6_2:857969-857988 | Msa0903620:intron | 15.0% |
| !! | ATGTTGAAATTAACATAATT+TGG | - | chr6_2:858083-858102 | Msa0903620:CDS | 15.0% |
| !!! | ATGAATTTTGATTTTGATAT+TGG | - | chr6_2:858278-858297 | Msa0903620:intron | 15.0% |
| !!! | TTTTTTACATAAAAATCTCT+AGG | - | chr6_2:859123-859142 | Msa0903620:intron | 15.0% |
| !!! | TATTTCAGTTATTACATTTT+AGG | - | chr6_2:859519-859538 | Msa0903620:intron | 15.0% |
| !! | AAAGAATGATTTACAAAATA+TGG | - | chr6_2:860336-860355 | Msa0903620:intron | 15.0% |
| !! | AAAAATTGCAATGATATTTA+TGG | + | chr6_2:860758-860777 | None:intergenic | 15.0% |
| !!! | TTAGTTTTTTTAAGATATCA+AGG | - | chr6_2:861396-861415 | Msa0903620:intron | 15.0% |
| !! | ATTTAAATGATATAATGATG+TGG | - | chr6_2:861435-861454 | Msa0903620:intron | 15.0% |
| !!! | AATTGTTGTTGAATTTCATT+AGG | - | chr6_2:857837-857856 | Msa0903620:CDS | 20.0% |
| !!! | ATTGTTGTTGAATTTCATTA+GGG | - | chr6_2:857838-857857 | Msa0903620:CDS | 20.0% |
| !!! | ATTTGAGTTTAAATTGATTG+TGG | - | chr6_2:857871-857890 | Msa0903620:CDS | 20.0% |
| !!! | TTGTTAGTTTGTTGATATTT+TGG | - | chr6_2:858173-858192 | Msa0903620:CDS | 20.0% |
| !! | TCAAAATTCATAATATTCCA+GGG | + | chr6_2:858269-858288 | None:intergenic | 20.0% |
| !! | ATCAAAATTCATAATATTCC+AGG | + | chr6_2:858270-858289 | None:intergenic | 20.0% |
| !!! | TTAACAGATTTCTTTTTGTT+AGG | + | chr6_2:859373-859392 | None:intergenic | 20.0% |
| !! | GATTATAAATACACAATACT+TGG | - | chr6_2:859783-859802 | Msa0903620:CDS | 20.0% |
| !!! | ATGCATCTAAAATGATATAA+CGG | + | chr6_2:859979-859998 | None:intergenic | 20.0% |
| !! | ATGCATAAAACTTAACTATT+AGG | - | chr6_2:859993-860012 | Msa0903620:CDS | 20.0% |
| !! | ATGAAATTAACATTCAACAT+TGG | + | chr6_2:860020-860039 | None:intergenic | 20.0% |
| !!! | ATGCAATGTTATTTTTATCA+AGG | - | chr6_2:860427-860446 | Msa0903620:intron | 20.0% |
| !! | ACTTTCGAAATATATATTTC+AGG | - | chr6_2:860528-860547 | Msa0903620:intron | 20.0% |
| !!! | TTCATTTTAAGACAAAACAA+TGG | + | chr6_2:861153-861172 | None:intergenic | 20.0% |
| ! | AAATTAGGACAAATCCAAAA+AGG | + | chr6_2:857764-857783 | None:intergenic | 25.0% |
| ! | AAATAAATAAAACCTAGGTC+TGG | + | chr6_2:857952-857971 | None:intergenic | 25.0% |
| !! | CAAATAAGATAAAGCATCAA+TGG | + | chr6_2:858454-858473 | None:intergenic | 25.0% |
| !! | TGATGCTTTATCTTATTTGA+AGG | - | chr6_2:858455-858474 | Msa0903620:intron | 25.0% |
| !! | TCATACTTTTCTTTTTGATC+CGG | + | chr6_2:858498-858517 | None:intergenic | 25.0% |
| ! | CATCACAAAACGTAAAAATA+AGG | + | chr6_2:858572-858591 | None:intergenic | 25.0% |
| ! | AACATTGTACTTACAATCAA+GGG | - | chr6_2:858606-858625 | Msa0903620:intron | 25.0% |
| !! | AATTCAACCTTTTTCTTTTG+AGG | + | chr6_2:858788-858807 | None:intergenic | 25.0% |
| ! | CAAAAAGAAATCTGTTAAGA+AGG | - | chr6_2:859375-859394 | Msa0903620:intron | 25.0% |
| !!! | ATATGTTGCTTGAACATTTT+AGG | - | chr6_2:859486-859505 | Msa0903620:intron | 25.0% |
| ! | TCATAAAGTAGTATGATTGT+CGG | - | chr6_2:859617-859636 | Msa0903620:intron | 25.0% |
| !!! | CTTCTTAATTTTTTACGTGT+TGG | + | chr6_2:859651-859670 | None:intergenic | 25.0% |
| ! | ACACGTAAAAAATTAAGAAG+AGG | - | chr6_2:859651-859670 | Msa0903620:intron | 25.0% |
| !!! | CAATTCACTTTTCATCTATT+TGG | - | chr6_2:860832-860851 | Msa0903620:intron | 25.0% |
| AAAGGAGTGAAACACAAAAT+AGG | + | chr6_2:857746-857765 | None:intergenic | 30.0% | |
| ! | TTTTGTGTTTCACTCCTTTT+TGG | - | chr6_2:857747-857766 | Msa0903620:three_prime_UTR | 30.0% |
| CAACAGTGAAACACAAAATT+AGG | + | chr6_2:857779-857798 | None:intergenic | 30.0% | |
| ATTGAACACTACAAGTGAAA+AGG | + | chr6_2:857820-857839 | None:intergenic | 30.0% | |
| TCAACATTACTCGTATTACT+TGG | + | chr6_2:858070-858089 | None:intergenic | 30.0% | |
| ACAAGAGTTCATAATATTCC+AGG | + | chr6_2:858157-858176 | None:intergenic | 30.0% | |
| CTTGTTCGTTGTTGATATTT+CGG | - | chr6_2:858313-858332 | Msa0903620:intron | 30.0% | |
| ! | GTTTTGTGATGAGTTTGAAA+CGG | - | chr6_2:858581-858600 | Msa0903620:CDS | 30.0% |
| !! | TTTTGTGATGAGTTTGAAAC+GGG | - | chr6_2:858582-858601 | Msa0903620:CDS | 30.0% |
| GAACATTGTACTTACAATCA+AGG | - | chr6_2:858605-858624 | Msa0903620:intron | 30.0% | |
| !!! | TGAAGATGCTATTAGTTTTG+TGG | - | chr6_2:858808-858827 | Msa0903620:intron | 30.0% |
| !!! | GAAGATGCTATTAGTTTTGT+GGG | - | chr6_2:858809-858828 | Msa0903620:intron | 30.0% |
| CAAATTTACCAATTACAGCT+AGG | + | chr6_2:858894-858913 | None:intergenic | 30.0% | |
| GCATGTTTACAAATCATTCT+TGG | - | chr6_2:858944-858963 | Msa0903620:intron | 30.0% | |
| !! | ACAAAGTGCTGAAAGTATAT+AGG | + | chr6_2:859040-859059 | None:intergenic | 30.0% |
| ATCACTATGGTCCTTAAAAA+GGG | + | chr6_2:859155-859174 | None:intergenic | 30.0% | |
| AATCACTATGGTCCTTAAAA+AGG | + | chr6_2:859156-859175 | None:intergenic | 30.0% | |
| TAAGCTATCATACTATGCTT+TGG | - | chr6_2:859459-859478 | Msa0903620:intron | 30.0% | |
| GTTTAACAAGAGAACTATAG+TGG | - | chr6_2:859890-859909 | Msa0903620:CDS | 30.0% | |
| GAAACTTCAAGAAATCGAAA+TGG | + | chr6_2:860080-860099 | None:intergenic | 30.0% | |
| CAATCAAGAAAGATGTTAAC+AGG | + | chr6_2:860122-860141 | None:intergenic | 30.0% | |
| AAGTTTATGTGCGAAAGTTA+AGG | - | chr6_2:860240-860259 | Msa0903620:intron | 30.0% | |
| TTCCATTGCTAAAATCATGA+AGG | + | chr6_2:860309-860328 | None:intergenic | 30.0% | |
| TGAGACCTATTTCAATGAAT+CGG | + | chr6_2:860454-860473 | None:intergenic | 30.0% | |
| GAGCGAATTCAATGATTATT+TGG | - | chr6_2:860585-860604 | Msa0903620:intron | 30.0% | |
| TGAAGAGAAAGAAACATACA+AGG | - | chr6_2:860976-860995 | Msa0903620:intron | 30.0% | |
| AACATACAAGGAGAAATACA+TGG | - | chr6_2:860988-861007 | Msa0903620:intron | 30.0% | |
| ACATACAAGGAGAAATACAT+GGG | - | chr6_2:860989-861008 | Msa0903620:intron | 30.0% | |
| ! | AAATGTGTTGACATGCATTT+AGG | - | chr6_2:861171-861190 | Msa0903620:intron | 30.0% |
| !! | GACATTGTTATTTCTGATGT+AGG | - | chr6_2:861200-861219 | Msa0903620:intron | 30.0% |
| GTAGACATCTATATAAGCTT+TGG | - | chr6_2:861465-861484 | Msa0903620:intron | 30.0% | |
| ATGAAATTCAAACGTCCCAT+AGG | - | chr6_2:857642-857661 | Msa0903620:three_prime_UTR | 35.0% | |
| CTATTTGAAAACTCGGTATC+CGG | - | chr6_2:857976-857995 | Msa0903620:intron | 35.0% | |
| TCTGCATTTGCATGTATTTG+TGG | - | chr6_2:858116-858135 | Msa0903620:CDS | 35.0% | |
| !! | TGGACGAATATTTTTGAACC+TGG | - | chr6_2:858136-858155 | Msa0903620:CDS | 35.0% |
| !! | TGTCTATGAAGCTCTGAAAA+TGG | - | chr6_2:858360-858379 | Msa0903620:intron | 35.0% |
| AAAGTATGACATGTTCCTTC+AGG | - | chr6_2:858509-858528 | Msa0903620:intron | 35.0% | |
| TGAAATCTTTCATGACCTGA+AGG | + | chr6_2:858527-858546 | None:intergenic | 35.0% | |
| TCAGGTCATGAAAGATTTCA+AGG | - | chr6_2:858527-858546 | Msa0903620:intron | 35.0% | |
| AGATTTCAAGGCTCAAAAGT+AGG | - | chr6_2:858539-858558 | Msa0903620:intron | 35.0% | |
| ! | TTTGTGATGAGTTTGAAACG+GGG | - | chr6_2:858583-858602 | Msa0903620:CDS | 35.0% |
| ! | GGTCACAGCAATTTGATTTA+TGG | - | chr6_2:858707-858726 | Msa0903620:intron | 35.0% |
| ! | TTATCTCATGTCCTTTTGGT+AGG | + | chr6_2:858745-858764 | None:intergenic | 35.0% |
| !! | AGTCTTATCTCATGTCCTTT+TGG | + | chr6_2:858749-858768 | None:intergenic | 35.0% |
| ACATGAGATAAGACTTGATG+AGG | - | chr6_2:858754-858773 | Msa0903620:intron | 35.0% | |
| TGAAGCTCCTCAAAAGAAAA+AGG | - | chr6_2:858778-858797 | Msa0903620:intron | 35.0% | |
| !!! | TAGTTTTGTGGGCAAGATAA+AGG | - | chr6_2:858820-858839 | Msa0903620:CDS | 35.0% |
| TCAGTTACTAAGCGAGTTTA+CGG | - | chr6_2:858856-858875 | Msa0903620:CDS | 35.0% | |
| CGTTAATTCCTAGCTGTAAT+TGG | - | chr6_2:858883-858902 | Msa0903620:CDS | 35.0% | |
| ! | TGTAAACATGCTCGTCATTT+TGG | + | chr6_2:858935-858954 | None:intergenic | 35.0% |
| AGGTTTACAGTGAGGTAATA+TGG | - | chr6_2:859009-859028 | Msa0903620:intron | 35.0% | |
| ACAGCATATTGAAAACGTGA+TGG | + | chr6_2:859575-859594 | None:intergenic | 35.0% | |
| !! | CACTATTGACTTCTAGAGAA+TGG | + | chr6_2:859757-859776 | None:intergenic | 35.0% |
| TAACAAGAGAACTATAGTGG+AGG | - | chr6_2:859893-859912 | Msa0903620:CDS | 35.0% | |
| GAAAGATGTTAACAGGACAA+AGG | + | chr6_2:860115-860134 | None:intergenic | 35.0% | |
| ATACATGACTGACACGAATA+CGG | + | chr6_2:860209-860228 | None:intergenic | 35.0% | |
| !! | TGCCTTCATGATTTTAGCAA+TGG | - | chr6_2:860304-860323 | Msa0903620:intron | 35.0% |
| AAGGTCCGATTCATTGAAAT+AGG | - | chr6_2:860446-860465 | Msa0903620:intron | 35.0% | |
| TGAAATAGGTCTCACTATCT+CGG | - | chr6_2:860460-860479 | Msa0903620:intron | 35.0% | |
| ! | TTTCAGGTGACTGATTTACT+TGG | - | chr6_2:860544-860563 | Msa0903620:intron | 35.0% |
| !!! | TGCGTATTTGTTTTTGCAGA+CGG | - | chr6_2:860693-860712 | Msa0903620:CDS | 35.0% |
| TCATTTATCGGAATCATCCA+AGG | - | chr6_2:860907-860926 | Msa0903620:intron | 35.0% | |
| TTCCAAAATGAACATTCAGG+AGG | + | chr6_2:861130-861149 | None:intergenic | 35.0% | |
| TGGTTCCAAAATGAACATTC+AGG | + | chr6_2:861133-861152 | None:intergenic | 35.0% | |
| TGTATAACAATGTCCAGCTT+AGG | + | chr6_2:861226-861245 | None:intergenic | 35.0% | |
| TCAGCTCTTGATGAACCTAT+GGG | + | chr6_2:857660-857679 | None:intergenic | 40.0% | |
| TTCAGCTCTTGATGAACCTA+TGG | + | chr6_2:857661-857680 | None:intergenic | 40.0% | |
| TTAAACTCGATATCCTGCTC+TGG | - | chr6_2:857906-857925 | Msa0903620:CDS | 40.0% | |
| ATGATTTAGCCCCTCAGATT+AGG | + | chr6_2:858010-858029 | None:intergenic | 40.0% | |
| ! | TGACTACGATTTTTGAACCC+TGG | - | chr6_2:858249-858268 | Msa0903620:CDS | 40.0% |
| !! | CTATGAAGCTCTGAAAATGG+AGG | - | chr6_2:858363-858382 | Msa0903620:intron | 40.0% |
| GGAAGTGAAAAACACGTTTC+CGG | - | chr6_2:858476-858495 | Msa0903620:intron | 40.0% | |
| ! | AGGGATCTCAGTATTTTGTG+TGG | - | chr6_2:858625-858644 | Msa0903620:intron | 40.0% |
| GCTGTCAAGGAACTATTCAA+AGG | - | chr6_2:858686-858705 | Msa0903620:intron | 40.0% | |
| TTCAACGCTTACCTACCAAA+AGG | - | chr6_2:858731-858750 | Msa0903620:intron | 40.0% | |
| AGAACACAAGACCATTACTG+AGG | - | chr6_2:858989-859008 | Msa0903620:intron | 40.0% | |
| CTCACTGTAAACCTCAGTAA+TGG | + | chr6_2:859003-859022 | None:intergenic | 40.0% | |
| CATTACTGAGGTTTACAGTG+AGG | - | chr6_2:859001-859020 | Msa0903620:intron | 40.0% | |
| ! | CTAGGTTGCTACCCTTTTTA+AGG | - | chr6_2:859141-859160 | Msa0903620:intron | 40.0% |
| ACTCCTCAAGCAAATCACTA+TGG | + | chr6_2:859168-859187 | None:intergenic | 40.0% | |
| ! | GAAGGTTCTAGCGAATTATC+TGG | + | chr6_2:859205-859224 | None:intergenic | 40.0% |
| CTCATATCACGATGACCAAA+TGG | + | chr6_2:859241-859260 | None:intergenic | 40.0% | |
| AACGTGAGATCAGGGATATA+AGG | - | chr6_2:859320-859339 | Msa0903620:intron | 40.0% | |
| GTTAAGAAGGCTGAAGCTAA+TGG | - | chr6_2:859388-859407 | Msa0903620:intron | 40.0% | |
| TATGTGCGAAAGTTAAGGAG+AGG | - | chr6_2:860245-860264 | Msa0903620:intron | 40.0% | |
| !! | GAAGGCACTTCAAGAATGTT+TGG | + | chr6_2:860291-860310 | None:intergenic | 40.0% |
| GTCAGCAAAGATACACGAAA+AGG | + | chr6_2:860371-860390 | None:intergenic | 40.0% | |
| !! | TCGTGTATCTTTGCTGACTT+TGG | - | chr6_2:860373-860392 | Msa0903620:intron | 40.0% |
| TTACCTTGCGAGTTCTATTG+CGG | - | chr6_2:860488-860507 | Msa0903620:intron | 40.0% | |
| !! | TTGGAGCGTTGTGAAAATAC+TGG | - | chr6_2:860604-860623 | Msa0903620:intron | 40.0% |
| ! | TCGAATTTTCTCATGCCTTG+AGG | - | chr6_2:860662-860681 | Msa0903620:CDS | 40.0% |
| ATACGCAGAATGAAACCTCA+AGG | + | chr6_2:860680-860699 | None:intergenic | 40.0% | |
| !!! | GCGTATTTGTTTTTGCAGAC+GGG | - | chr6_2:860694-860713 | Msa0903620:CDS | 40.0% |
| CGCTACTGATGGTCATTTAT+CGG | - | chr6_2:860895-860914 | Msa0903620:intron | 40.0% | |
| TTTATCGGAATCATCCAAGG+TGG | - | chr6_2:860910-860929 | Msa0903620:intron | 40.0% | |
| GCTAAGGTCAAGTTCTTGAA+TGG | + | chr6_2:861020-861039 | None:intergenic | 40.0% | |
| ! | AAGTTTTACCTGTCGTCAGT+AGG | + | chr6_2:861079-861098 | None:intergenic | 40.0% |
| AAAATGAACATTCAGGAGGC+AGG | + | chr6_2:861126-861145 | None:intergenic | 40.0% | |
| ! | TGCCTCCTGAATGTTCATTT+TGG | - | chr6_2:861125-861144 | Msa0903620:intron | 40.0% |
| ATTGTTATACACATTGCGCG+CGG | - | chr6_2:861235-861254 | Msa0903620:intron | 40.0% | |
| ! | AAGCTTTGGTTGACATGTCA+TGG | - | chr6_2:861479-861498 | Msa0903620:intron | 40.0% |
| !! | TAATCAAGGTTGATGTGGAC+CGG | + | chr6_2:861506-861525 | None:intergenic | 40.0% |
| !! | CTCAGATTAGGTTCTAGAGC+CGG | + | chr6_2:857998-858017 | None:intergenic | 45.0% |
| !! | GGCTCTAGAACCTAATCTGA+GGG | - | chr6_2:857997-858016 | Msa0903620:intron | 45.0% |
| !! | GCTCTAGAACCTAATCTGAG+GGG | - | chr6_2:857998-858017 | Msa0903620:intron | 45.0% |
| !! | TGAAGCTCTGAAAATGGAGG+TGG | - | chr6_2:858366-858385 | Msa0903620:intron | 45.0% |
| TCAATGGTTGTCAGCTTCCT+GGG | + | chr6_2:858438-858457 | None:intergenic | 45.0% | |
| ATCAATGGTTGTCAGCTTCC+TGG | + | chr6_2:858439-858458 | None:intergenic | 45.0% | |
| TTTGTGTGGCGATTGTTTCC+AGG | - | chr6_2:858639-858658 | Msa0903620:intron | 45.0% | |
| !! | GGACCATAGTGATTTGCTTG+AGG | - | chr6_2:859162-859181 | Msa0903620:intron | 45.0% |
| AATGGAGCATGTTGAGTGGA+AGG | + | chr6_2:859223-859242 | None:intergenic | 45.0% | |
| TCCACTCAACATGCTCCATT+TGG | - | chr6_2:859223-859242 | Msa0903620:intron | 45.0% | |
| ACCAAATGGAGCATGTTGAG+TGG | + | chr6_2:859227-859246 | None:intergenic | 45.0% | |
| !! | GAGTGTTGAACATCCTGATC+TGG | - | chr6_2:859258-859277 | Msa0903620:intron | 45.0% |
| CGAAACAATGAACTTGCGCA+AGG | - | chr6_2:859288-859307 | Msa0903620:intron | 45.0% | |
| AGCAAAGGAAACGTGAGATC+AGG | - | chr6_2:859311-859330 | Msa0903620:intron | 45.0% | |
| GCAAAGGAAACGTGAGATCA+GGG | - | chr6_2:859312-859331 | Msa0903620:intron | 45.0% | |
| AAATGACCATCAGTAGCGAG+TGG | + | chr6_2:860893-860912 | None:intergenic | 45.0% | |
| CAAGAACTTGACCTTAGCGT+CGG | - | chr6_2:861022-861041 | Msa0903620:intron | 45.0% | |
| AACAATGTTTGCCGACGCTA+AGG | + | chr6_2:861036-861055 | None:intergenic | 45.0% | |
| TTTCTGATGTAGGCCTAAGC+TGG | - | chr6_2:861210-861229 | Msa0903620:intron | 45.0% | |
| !! | AATCAAGGTTGATGTGGACC+GGG | + | chr6_2:861505-861524 | None:intergenic | 45.0% |
| !! | CTCGATATCCTGCTCTGGAA+CGG | - | chr6_2:857911-857930 | Msa0903620:CDS | 50.0% |
| AAACCTAGGTCTGGTCCACT+CGG | + | chr6_2:857943-857962 | None:intergenic | 50.0% | |
| !! | CGGCTCTAGAACCTAATCTG+AGG | - | chr6_2:857996-858015 | Msa0903620:intron | 50.0% |
| TCTGAAAATGGAGGTGGCAG+TGG | - | chr6_2:858372-858391 | Msa0903620:intron | 50.0% | |
| GGTGAAGGCGGAGTTGTTAA+TGG | - | chr6_2:858393-858412 | Msa0903620:intron | 50.0% | |
| GAAGGCGGAGTTGTTAATGG+CGG | - | chr6_2:858396-858415 | Msa0903620:intron | 50.0% | |
| TGTGGCGATTGTTTCCAGGA+CGG | - | chr6_2:858643-858662 | Msa0903620:intron | 50.0% | |
| !! | TGGTGTCATAGCTGCTGTCA+AGG | - | chr6_2:858673-858692 | Msa0903620:intron | 50.0% |
| GTTTCGTCGTCATCCAGATC+AGG | + | chr6_2:859274-859293 | None:intergenic | 50.0% | |
| TGAACTTGCGCAAGGAGCAA+AGG | - | chr6_2:859296-859315 | Msa0903620:intron | 50.0% | |
| AGACCGCAATAGAACTCGCA+AGG | + | chr6_2:860494-860513 | None:intergenic | 50.0% | |
| ! | TTTGCAGACGGGTTTCTTGC+TGG | - | chr6_2:860705-860724 | Msa0903620:CDS | 50.0% |
| ATCGGAATCATCCAAGGTGG+AGG | - | chr6_2:860913-860932 | Msa0903620:intron | 50.0% | |
| CAAAGAACCCAAGCGTGAGA+TGG | - | chr6_2:860946-860965 | Msa0903620:intron | 50.0% | |
| CATCCATCCATCTCACGCTT+GGG | + | chr6_2:860956-860975 | None:intergenic | 50.0% | |
| ACATCCATCCATCTCACGCT+TGG | + | chr6_2:860957-860976 | None:intergenic | 50.0% | |
| CGTCGGCAAACATTGTTCTC+CGG | - | chr6_2:861039-861058 | Msa0903620:intron | 50.0% | |
| GTCGGCAAACATTGTTCTCC+GGG | - | chr6_2:861040-861059 | Msa0903620:intron | 50.0% | |
| TGTCGTCAGTAGGTAGAAGC+TGG | + | chr6_2:861069-861088 | None:intergenic | 50.0% | |
| AGCTTCTACCTACTGACGAC+AGG | - | chr6_2:861068-861087 | Msa0903620:intron | 50.0% | |
| TTGGTTGACATGTCATGGCC+CGG | - | chr6_2:861484-861503 | Msa0903620:intron | 50.0% | |
| !! | GGATTAGTCCGTTCCAGAGC+AGG | + | chr6_2:857922-857941 | None:intergenic | 55.0% |
| !! | CTGGAACGGACTAATCCGAG+TGG | - | chr6_2:857925-857944 | Msa0903620:CDS | 55.0% |
| AATCCGAGTGGACCAGACCT+AGG | - | chr6_2:857937-857956 | Msa0903620:intron | 55.0% | |
| AATGGAGGTGGCAGTGGTGA+AGG | - | chr6_2:858378-858397 | Msa0903620:intron | 55.0% | |
| GGAGTTGTTAATGGCGGTGG+AGG | - | chr6_2:858402-858421 | Msa0903620:intron | 55.0% | |
| GTTTCCAGGACGGACACTCA+TGG | - | chr6_2:858653-858672 | Msa0903620:intron | 55.0% | |
| TCAGAGCCACTCGCTACTGA+TGG | - | chr6_2:860884-860903 | Msa0903620:intron | 55.0% | |
| GAACCCAAGCGTGAGATGGA+TGG | - | chr6_2:860950-860969 | Msa0903620:intron | 55.0% | |
| GTAGGTAGAAGCTGGTAGCC+CGG | + | chr6_2:861061-861080 | None:intergenic | 55.0% | |
| GTCGTAGCCAGCAATCACTG+TGG | - | chr6_2:861287-861306 | Msa0903620:intron | 55.0% | |
| GTAGCCAGCAATCACTGTGG+AGG | - | chr6_2:861290-861309 | Msa0903620:intron | 55.0% | |
| ACTGCCTCCACAGTGATTGC+TGG | + | chr6_2:861297-861316 | None:intergenic | 55.0% | |
| GGCGGAGTTGTTAATGGCGG+TGG | - | chr6_2:858399-858418 | Msa0903620:intron | 60.0% | |
| ! | GTGGAGGTGCAAGTACTCCC+AGG | - | chr6_2:858418-858437 | Msa0903620:intron | 60.0% |
| GACACCATGAGTGTCCGTCC+TGG | + | chr6_2:858660-858679 | None:intergenic | 60.0% | |
| GTCTTCGTCGTCCTCCACCT+TGG | + | chr6_2:860927-860946 | None:intergenic | 60.0% | |
| TGGAGGCAGTGCGCATGGAT+TGG | - | chr6_2:861307-861326 | Msa0903620:intron | 60.0% | |
| GGAGGTGGCAGTGGTGAAGG+CGG | - | chr6_2:858381-858400 | Msa0903620:intron | 65.0% | |
| GGAGAGGTTGAGCAGCGCTG+AGG | - | chr6_2:860261-860280 | Msa0903620:intron | 65.0% | |
| GGTGACAAGTCAGCCGTCGC+AGG | - | chr6_2:861256-861275 | Msa0903620:intron | 65.0% | |
| TCAGCCGTCGCAGGTTGCAG+CGG | - | chr6_2:861265-861284 | Msa0903620:intron | 65.0% | |
| ACGACCGCTGCAACCTGCGA+CGG | + | chr6_2:861272-861291 | None:intergenic | 65.0% | |
| CACTGTGGAGGCAGTGCGCA+TGG | - | chr6_2:861302-861321 | Msa0903620:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 857640 | 861529 | 857640 | ID=Msa0903620;Name=Msa0903620 |
| chr6_2 | mRNA | 857640 | 861529 | 857640 | ID=Msa0903620-mRNA-1;Parent=Msa0903620;Name=Msa0903620-mRNA-1;_AED=0.16;_eAED=0.16;_QI=2|0.37|0.22|0.88|0.87|0.88|9|148|405 |
| chr6_2 | exon | 857640 | 857947 | 857640 | ID=Msa0903620-mRNA-1:exon:392;Parent=Msa0903620-mRNA-1 |
| chr6_2 | exon | 858080 | 858281 | 858080 | ID=Msa0903620-mRNA-1:exon:391;Parent=Msa0903620-mRNA-1 |
| chr6_2 | exon | 858428 | 858457 | 858428 | ID=Msa0903620-mRNA-1:exon:390;Parent=Msa0903620-mRNA-1 |
| chr6_2 | exon | 858544 | 858619 | 858544 | ID=Msa0903620-mRNA-1:exon:389;Parent=Msa0903620-mRNA-1 |
| chr6_2 | exon | 858812 | 858948 | 858812 | ID=Msa0903620-mRNA-1:exon:388;Parent=Msa0903620-mRNA-1 |
| chr6_2 | exon | 859712 | 860024 | 859712 | ID=Msa0903620-mRNA-1:exon:387;Parent=Msa0903620-mRNA-1 |
| chr6_2 | exon | 860147 | 860245 | 860147 | ID=Msa0903620-mRNA-1:exon:386;Parent=Msa0903620-mRNA-1 |
| chr6_2 | exon | 860639 | 860798 | 860639 | ID=Msa0903620-mRNA-1:exon:385;Parent=Msa0903620-mRNA-1 |
| chr6_2 | exon | 861487 | 861529 | 861487 | ID=Msa0903620-mRNA-1:exon:384;Parent=Msa0903620-mRNA-1 |
| chr6_2 | five_prime_UTR | 861528 | 861529 | 861528 | ID=Msa0903620-mRNA-1:five_prime_utr;Parent=Msa0903620-mRNA-1 |
| chr6_2 | CDS | 861487 | 861527 | 861487 | ID=Msa0903620-mRNA-1:cds;Parent=Msa0903620-mRNA-1 |
| chr6_2 | CDS | 860639 | 860798 | 860639 | ID=Msa0903620-mRNA-1:cds;Parent=Msa0903620-mRNA-1 |
| chr6_2 | CDS | 860147 | 860245 | 860147 | ID=Msa0903620-mRNA-1:cds;Parent=Msa0903620-mRNA-1 |
| chr6_2 | CDS | 859712 | 860024 | 859712 | ID=Msa0903620-mRNA-1:cds;Parent=Msa0903620-mRNA-1 |
| chr6_2 | CDS | 858812 | 858948 | 858812 | ID=Msa0903620-mRNA-1:cds;Parent=Msa0903620-mRNA-1 |
| chr6_2 | CDS | 858544 | 858619 | 858544 | ID=Msa0903620-mRNA-1:cds;Parent=Msa0903620-mRNA-1 |
| chr6_2 | CDS | 858428 | 858457 | 858428 | ID=Msa0903620-mRNA-1:cds;Parent=Msa0903620-mRNA-1 |
| chr6_2 | CDS | 858080 | 858281 | 858080 | ID=Msa0903620-mRNA-1:cds;Parent=Msa0903620-mRNA-1 |
| chr6_2 | CDS | 857788 | 857947 | 857788 | ID=Msa0903620-mRNA-1:cds;Parent=Msa0903620-mRNA-1 |
| chr6_2 | three_prime_UTR | 857640 | 857787 | 857640 | ID=Msa0903620-mRNA-1:three_prime_utr;Parent=Msa0903620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
