AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1124410


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1124410 MtrunA17_Chr7g0264841 97.697 304 7 0 1 304 1 304 0.0 608
Msa1124410 MtrunA17_Chr8g0391991 70.492 183 52 1 121 303 1 181 1.19e-89 265
Msa1124410 MtrunA17_Chr6g0471571 72.535 142 37 1 121 262 1 140 4.77e-67 207
Msa1124410 MtrunA17_Chr5g0439711 71.681 113 30 2 192 303 46 157 2.49e-47 156
Msa1124410 MtrunA17_Chr7g0238661 66.019 103 35 0 43 145 1 103 1.04e-42 142
Msa1124410 MtrunA17_Chr3g0093841 25.987 304 184 7 38 303 517 817 2.59e-20 91.3
Msa1124410 MtrunA17_Chr3g0093841 31.148 122 83 1 36 157 189 309 5.59e-17 81.3
Msa1124410 MtrunA17_Chr3g0093841 32.278 158 100 3 32 189 20 170 1.36e-16 80.1
Msa1124410 MtrunA17_Chr3g0093841 27.815 151 102 3 23 171 340 485 1.18e-14 74.3
Msa1124410 MtrunA17_Chr8g0354231 33.607 122 81 0 38 159 21 142 7.39e-18 82.4
Msa1124410 MtrunA17_Chr5g0405761 23.311 296 204 8 6 290 26 309 1.85e-13 69.7
Msa1124410 MtrunA17_Chr1g0176881 26.776 183 117 4 16 186 6 183 2.03e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1124410 AT4G02550.2 23.664 262 188 2 39 300 22 271 4.59e-20 88.2
Msa1124410 AT4G02550.4 23.664 262 188 2 39 300 22 271 4.59e-20 88.2
Msa1124410 AT4G02550.1 22.695 282 195 3 39 300 22 300 7.74e-19 85.5
Msa1124410 AT4G02550.5 22.695 282 195 3 39 300 22 300 7.74e-19 85.5
Msa1124410 AT4G02550.3 22.695 282 195 3 39 300 37 315 1.03e-18 85.1
Msa1124410 AT4G02210.1 22.878 271 193 5 33 303 180 434 4.72e-17 81.6
Msa1124410 AT4G02210.2 22.878 271 193 5 33 303 180 434 4.72e-17 81.6
Msa1124410 AT2G24960.2 25.676 222 157 4 34 251 322 539 1.37e-14 74.7
Msa1124410 AT2G24960.2 27.559 127 89 2 39 163 172 297 2.31e-11 65.1
Msa1124410 AT2G24960.1 27.559 127 89 2 39 163 172 297 2.17e-11 65.1

Find 82 sgRNAs with CRISPR-Local

Find 378 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTTGTCTCTACCCTTAT+TGG 0.077608 7_3:-75584829 None:intergenic
AGCTTACTTCACGTGGAATT+TGG 0.195076 7_3:+75582931 Msa1124410:CDS
AGATGGAAGATAGCAATATT+TGG 0.218412 7_3:+75582888 Msa1124410:CDS
AACACTTCTTGCACCTCTTT+TGG 0.228701 7_3:-75584936 None:intergenic
GATTTGATATATAAGATTAA+AGG 0.229247 7_3:-75585816 None:intergenic
GATTTAAGATCATTCTAAAT+TGG 0.235394 7_3:+75584622 Msa1124410:CDS
TTCGTCTTCGCCTGTTCTTC+TGG 0.242435 7_3:+75580002 Msa1124410:five_prime_UTR
GTCGCCAGACTAACGGAATT+TGG 0.248526 7_3:+75583002 Msa1124410:CDS
TTCGTTACTTGCAGCTTTCT+TGG 0.251907 7_3:+75580986 Msa1124410:intron
ATATTTATGTTCAAACATTT+CGG 0.253592 7_3:+75585879 Msa1124410:three_prime_UTR
ACAATGTACCTGTGCCAATA+AGG 0.269725 7_3:+75584815 Msa1124410:CDS
TATTTATGTTCAAACATTTC+GGG 0.272010 7_3:+75585880 Msa1124410:three_prime_UTR
TAATCTACAACTACTAAATT+CGG 0.280492 7_3:-75585857 None:intergenic
AATGATATTCTCAGTCAAAA+TGG 0.308073 7_3:+75583142 Msa1124410:CDS
ATTCTCAGTCAAAATGGATT+TGG 0.308207 7_3:+75583148 Msa1124410:CDS
ACTTAGAGATCAAAGAAGTT+TGG 0.331117 7_3:+75582979 Msa1124410:CDS
CTGTATACCGCATTTGTTGC+GGG 0.344558 7_3:+75585721 Msa1124410:three_prime_UTR
GATGGAAGATAGCAATATTT+GGG 0.350278 7_3:+75582889 Msa1124410:CDS
CTCTAAATCAATATACTCAT+TGG 0.356023 7_3:-75584763 None:intergenic
GATATATGTGCTAAAGATAA+AGG 0.380018 7_3:+75584657 Msa1124410:CDS
TGCGGGAATTATTACACCTT+TGG 0.382661 7_3:+75585738 Msa1124410:three_prime_UTR
CAGTCAAAATGGATTTGGTT+GGG 0.385398 7_3:+75583153 Msa1124410:CDS
GATCTTAAATCGGAATCGTT+TGG 0.392338 7_3:-75584610 None:intergenic
CTAGTCTATGCAAGAGGTTT+AGG 0.393024 7_3:+75582842 Msa1124410:CDS
CTTAGAGATCAAAGAAGTTT+GGG 0.395713 7_3:+75582980 Msa1124410:CDS
TCAATTGTGAAATTCCTTGC+TGG 0.397889 7_3:+75579897 Msa1124410:five_prime_UTR
GATTAAAGGAGTTAAAATCT+AGG 0.400479 7_3:-75585802 None:intergenic
AATCTACAACTACTAAATTC+GGG 0.402211 7_3:-75585856 None:intergenic
AATTTAGAATGATCTTAAAT+CGG 0.410859 7_3:-75584620 None:intergenic
CGAGAGCTTACCAGAAGAAC+AGG 0.428214 7_3:-75580012 None:intergenic
AGCAAGGAATTTCACAATTG+AGG 0.439628 7_3:-75579895 None:intergenic
ACTAACCTTGAGAGAATTGA+AGG 0.439754 7_3:-75581068 None:intergenic
GCGTCAAACTTTGGCGAAGA+TGG 0.444193 7_3:+75583107 Msa1124410:CDS
AAACTTTGGCGAAGATGGTA+TGG 0.445605 7_3:+75583112 Msa1124410:CDS
GTCTCTACCCTTATTGGCAC+AGG 0.454687 7_3:-75584823 None:intergenic
GATCGAGCTCCGAGAGAGTA+CGG 0.462532 7_3:-75579929 None:intergenic
CAATGTACCTGTGCCAATAA+GGG 0.467272 7_3:+75584816 Msa1124410:CDS
TTTGTGCAGTTGACGATTGA+AGG 0.468460 7_3:+75585665 Msa1124410:intron
TCCGCTATAAAGCAATCAAT+TGG 0.468621 7_3:+75584997 Msa1124410:CDS
ACGAAGTAGTTGAAGGAGTA+CGG 0.470940 7_3:-75579984 None:intergenic
CAATATTTGGGTTAAGAAAG+AGG 0.472672 7_3:+75582901 Msa1124410:CDS
TCAGTCAAAATGGATTTGGT+TGG 0.476299 7_3:+75583152 Msa1124410:CDS
AACTCTCCTCCGTACTCTCT+CGG 0.478652 7_3:+75579920 Msa1124410:five_prime_UTR
GCAAGAAGTGTTGAATGAAA+TGG 0.483806 7_3:+75584947 Msa1124410:CDS
ATTAAAGGAGTTAAAATCTA+GGG 0.502942 7_3:-75585801 None:intergenic
GTTACTTGCAGCTTTCTTGG+CGG 0.506956 7_3:+75580989 Msa1124410:intron
TAAGCAAAAGTGAAAACGCT+TGG 0.512123 7_3:-75581021 None:intergenic
TTTCACCTTCAATTCTCTCA+AGG 0.512283 7_3:+75581063 Msa1124410:five_prime_UTR
CGAAGTAGTTGAAGGAGTAC+GGG 0.515330 7_3:-75579983 None:intergenic
CAAAATGGATTTGGTTGGGA+TGG 0.515934 7_3:+75583157 Msa1124410:CDS
GGTTTAGGCCGCAAGACAAA+GGG 0.517366 7_3:+75582857 Msa1124410:CDS
TGAAGGATGATAACTTGAGC+TGG 0.523596 7_3:+75585682 Msa1124410:three_prime_UTR
GGCGAAGACGAAGTAGTTGA+AGG 0.531895 7_3:-75579991 None:intergenic
TGTGCTAAAGATAAAGGAGG+TGG 0.540390 7_3:+75584663 Msa1124410:CDS
TCTGTATACCGCATTTGTTG+CGG 0.549979 7_3:+75585720 Msa1124410:three_prime_UTR
AGGTTTAGGCCGCAAGACAA+AGG 0.552206 7_3:+75582856 Msa1124410:CDS
ACCAATTGATTGCTTTATAG+CGG 0.552413 7_3:-75584998 None:intergenic
AATGTAGATGAAGATGAAGA+AGG 0.559453 7_3:+75584738 Msa1124410:CDS
CTTCACGTGGAATTTGGACA+TGG 0.561471 7_3:+75582937 Msa1124410:CDS
AACTTTGGCGAAGATGGTAT+GGG 0.564966 7_3:+75583113 Msa1124410:CDS
CCGTCGAAGATGAAAATGCA+TGG 0.574985 7_3:+75583197 Msa1124410:CDS
AGTAGAACGTGCAGTTAATG+TGG 0.581141 7_3:+75584692 Msa1124410:CDS
CAATAAGGGTAGAGACAAAG+AGG 0.586320 7_3:+75584830 Msa1124410:CDS
AAAGTGAAAACGCTTGGAGT+AGG 0.588544 7_3:-75581015 None:intergenic
TCTAGTCTAGTCTATGCAAG+AGG 0.592050 7_3:+75582836 Msa1124410:CDS
GGAAGGAAATACTCCAAAAG+AGG 0.596463 7_3:+75584923 Msa1124410:CDS
ATCTACAACTACTAAATTCG+GGG 0.601643 7_3:-75585855 None:intergenic
ATTTATGTTCAAACATTTCG+GGG 0.608149 7_3:+75585881 Msa1124410:three_prime_UTR
AGTTTGGGTCGCCAGACTAA+CGG 0.608284 7_3:+75582995 Msa1124410:CDS
AAGGAATTTCACAATTGAGG+TGG 0.609122 7_3:-75579892 None:intergenic
TGCATGGAATGAATATGTCA+AGG 0.618662 7_3:+75583213 Msa1124410:CDS
ATGCAAGAGCTTACTTCACG+TGG 0.626769 7_3:+75582924 Msa1124410:CDS
TACGGAGGAGAGTTCCAGCA+AGG 0.643259 7_3:-75579911 None:intergenic
AATAATTCCCGCAACAAATG+CGG 0.646757 7_3:-75585728 None:intergenic
AATAAGGGTAGAGACAAAGA+GGG 0.651555 7_3:+75584831 Msa1124410:CDS
ATATGTGCTAAAGATAAAGG+AGG 0.652322 7_3:+75584660 Msa1124410:CDS
ACTAACATAACATTAACCAA+AGG 0.659048 7_3:-75585754 None:intergenic
CATGGAGCGTGTATTAGCTG+AGG 0.663124 7_3:+75582955 Msa1124410:CDS
ATCTTCGCCAAAGTTTGACG+CGG 0.707008 7_3:-75583105 None:intergenic
TCTACAACTACTAAATTCGG+GGG 0.708680 7_3:-75585854 None:intergenic
CGAGCTCCGAGAGAGTACGG+AGG 0.737956 7_3:-75579926 None:intergenic
ATAAGGGTAGAGACAAAGAG+GGG 0.742794 7_3:+75584832 Msa1124410:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAACATTTATTTTTTCTT+TGG - chr7_3:75580160-75580179 None:intergenic 10.0%
!!! ATGAATCTTTTTTTTTTTTT+TGG + chr7_3:75582085-75582104 Msa1124410:intron 10.0%
!! TGTTAGTATTAAAATTTATT+TGG + chr7_3:75583807-75583826 Msa1124410:intron 10.0%
!! GTTAGTATTAAAATTTATTT+GGG + chr7_3:75583808-75583827 Msa1124410:intron 10.0%
!! TTAGTATTAAAATTTATTTG+GGG + chr7_3:75583809-75583828 Msa1124410:intron 10.0%
!! AATGAAATAAAAAAAGATAA+AGG - chr7_3:75583992-75584011 None:intergenic 10.0%
!!! ATCAAATTTTTAAGTTTTTG+AGG - chr7_3:75580213-75580232 None:intergenic 15.0%
!!! TTTATAAACTTTTACTTCAA+TGG + chr7_3:75581461-75581480 Msa1124410:intron 15.0%
!!! TTATAAACTTTTACTTCAAT+GGG + chr7_3:75581462-75581481 Msa1124410:intron 15.0%
!! AAATAATTGTGAAATCAAAT+AGG + chr7_3:75583523-75583542 Msa1124410:intron 15.0%
!!! TTATGTTTTAAATTGCTTTT+TGG + chr7_3:75584281-75584300 Msa1124410:intron 15.0%
!!! TATGTTTTAAATTGCTTTTT+GGG + chr7_3:75584282-75584301 Msa1124410:intron 15.0%
!! AAATACTTGATTATCTTATT+TGG + chr7_3:75584482-75584501 Msa1124410:intron 15.0%
!!! AATTTAGAATGATCTTAAAT+CGG - chr7_3:75584623-75584642 None:intergenic 15.0%
!! TTGTACAAATTAGTAAAAAA+AGG + chr7_3:75584898-75584917 Msa1124410:CDS 15.0%
!!! AGTTAATTCAAAATAAGTTT+TGG + chr7_3:75585177-75585196 Msa1124410:intron 15.0%
!! GATTTGATATATAAGATTAA+AGG - chr7_3:75585819-75585838 None:intergenic 15.0%
!! ATATTTATGTTCAAACATTT+CGG + chr7_3:75585879-75585898 Msa1124410:three_prime_UTR 15.0%
!!! ATTTTTAAGTTTTTGAGGTT+TGG - chr7_3:75580208-75580227 None:intergenic 20.0%
!! ATGACTAAAATTGAAAATCT+TGG + chr7_3:75580245-75580264 Msa1124410:intron 20.0%
!! TGACTAAAATTGAAAATCTT+GGG + chr7_3:75580246-75580265 Msa1124410:intron 20.0%
!! ACTAATAAAATAGATACTTC+CGG - chr7_3:75580323-75580342 None:intergenic 20.0%
!!! CTCTTTTGTTAGTAATTTTA+TGG - chr7_3:75580420-75580439 None:intergenic 20.0%
!! TTGCAATTTAGATACATTTA+AGG + chr7_3:75580463-75580482 Msa1124410:intron 20.0%
!! TAAGATATAAGTATCAAAGA+GGG - chr7_3:75580556-75580575 None:intergenic 20.0%
!! TAATTGATACTCTATTGATA+TGG - chr7_3:75580960-75580979 None:intergenic 20.0%
!!! AAAACTTGTTGAGAATTATA+TGG + chr7_3:75581166-75581185 Msa1124410:intron 20.0%
!! CTAAAAAATAAAATGACAAC+TGG - chr7_3:75581300-75581319 None:intergenic 20.0%
!! CAAGATAAGAAATATATCTT+AGG + chr7_3:75582578-75582597 Msa1124410:intron 20.0%
!! TTCCTAAAAAATAACAGTTT+GGG - chr7_3:75583925-75583944 None:intergenic 20.0%
!! TTTCCTAAAAAATAACAGTT+TGG - chr7_3:75583926-75583945 None:intergenic 20.0%
!!! TTTAGGAAAAATTACACTTT+TGG + chr7_3:75583937-75583956 Msa1124410:intron 20.0%
!!! TTATTTCATTTTTTCCCTTT+TGG + chr7_3:75584002-75584021 Msa1124410:intron 20.0%
!! GCTTGAAAATAATATGAAAA+TGG + chr7_3:75584129-75584148 Msa1124410:intron 20.0%
!!! TAATTTCATTTTTGCTCTTT+TGG - chr7_3:75584156-75584175 None:intergenic 20.0%
!! TACTTATTGAAAGTTAAACA+GGG - chr7_3:75584380-75584399 None:intergenic 20.0%
!! ATACTTATTGAAAGTTAAAC+AGG - chr7_3:75584381-75584400 None:intergenic 20.0%
!!! GATTTAAGATCATTCTAAAT+TGG + chr7_3:75584622-75584641 Msa1124410:CDS 20.0%
!! ACAAATTAGTAAAAAAAGGA+TGG + chr7_3:75584902-75584921 Msa1124410:CDS 20.0%
!! AAAATATATTATTCGAACGT+AGG + chr7_3:75585292-75585311 Msa1124410:intron 20.0%
!!! ACTATTGGTTTAAATTTGTT+AGG + chr7_3:75585472-75585491 Msa1124410:intron 20.0%
!!! AAATTTGTTAGGTTATTGAA+TGG + chr7_3:75585483-75585502 Msa1124410:intron 20.0%
!!! AATTTGTTAGGTTATTGAAT+GGG + chr7_3:75585484-75585503 Msa1124410:intron 20.0%
!! ATTAAAGGAGTTAAAATCTA+GGG - chr7_3:75585804-75585823 None:intergenic 20.0%
!! TAATCTACAACTACTAAATT+CGG - chr7_3:75585860-75585879 None:intergenic 20.0%
!! TATTTATGTTCAAACATTTC+GGG + chr7_3:75585880-75585899 Msa1124410:three_prime_UTR 20.0%
!!! GATCCTCAAATATGTTTTTT+TGG + chr7_3:75580349-75580368 Msa1124410:intron 25.0%
! CTACCAAAAAAACATATTTG+AGG - chr7_3:75580355-75580374 None:intergenic 25.0%
!! TTAGAAAATGTGTTTTCTGT+TGG + chr7_3:75580384-75580403 Msa1124410:intron 25.0%
! AAGATATAAGTATCAAAGAG+GGG - chr7_3:75580555-75580574 None:intergenic 25.0%
! CTAAGATATAAGTATCAAAG+AGG - chr7_3:75580557-75580576 None:intergenic 25.0%
!!! AGATTAAGTAGTTTGTTTTC+AGG - chr7_3:75580726-75580745 None:intergenic 25.0%
! AACAATACATGAAAATGACT+AGG - chr7_3:75580820-75580839 None:intergenic 25.0%
! CTAAATGCTAAATAATTGCT+GGG - chr7_3:75580843-75580862 None:intergenic 25.0%
! TGAAAAATTTGAGAAACTTC+AGG + chr7_3:75581216-75581235 Msa1124410:intron 25.0%
!!! TATTGGATTAGCATTGTATT+TGG + chr7_3:75581667-75581686 Msa1124410:intron 25.0%
!!! ATTGGATTAGCATTGTATTT+GGG + chr7_3:75581668-75581687 Msa1124410:intron 25.0%
!! TATAAGGTGCTAAATATCTA+GGG - chr7_3:75582163-75582182 None:intergenic 25.0%
! TAATATCTAGTCTCTCTATA+AGG - chr7_3:75582179-75582198 None:intergenic 25.0%
! AATGTAATTGAAAGGTCATT+TGG + chr7_3:75582272-75582291 Msa1124410:intron 25.0%
! ATGTAATTGAAAGGTCATTT+GGG + chr7_3:75582273-75582292 Msa1124410:intron 25.0%
!! GAAAAGTGATCAAATTTTAG+AGG + chr7_3:75582401-75582420 Msa1124410:intron 25.0%
! TTGATCTTCAGACAATTTAA+CGG - chr7_3:75582520-75582539 None:intergenic 25.0%
! GAAATATATCTTAGGTTTAG+TGG + chr7_3:75582586-75582605 Msa1124410:intron 25.0%
! TTTGTTACCGACATATTATT+TGG + chr7_3:75582635-75582654 Msa1124410:intron 25.0%
!!! CATTTTAATGTTCAGCTTAT+CGG + chr7_3:75583067-75583086 Msa1124410:CDS 25.0%
! AATGATATTCTCAGTCAAAA+TGG + chr7_3:75583142-75583161 Msa1124410:CDS 25.0%
! CTTATCACAACAAAAGAAAA+GGG - chr7_3:75583385-75583404 None:intergenic 25.0%
! TTAAAGCTAAATAATTGAGC+TGG + chr7_3:75583453-75583472 Msa1124410:intron 25.0%
! TAAAGCTAAATAATTGAGCT+GGG + chr7_3:75583454-75583473 Msa1124410:intron 25.0%
! ATGTAAGGTTCTATCAATAT+AGG - chr7_3:75583497-75583516 None:intergenic 25.0%
! CAATTATTTCGCTTAATGTA+AGG - chr7_3:75583512-75583531 None:intergenic 25.0%
! ATTGTGAAATCAAATAGGAA+AGG + chr7_3:75583528-75583547 Msa1124410:intron 25.0%
! TCATATCAGATATTGAAACA+GGG + chr7_3:75583753-75583772 Msa1124410:intron 25.0%
! GATTTCAAGCTTCAAATATA+TGG + chr7_3:75584039-75584058 Msa1124410:intron 25.0%
! TTGTTGGATTTAAAAGTGAT+TGG + chr7_3:75584318-75584337 Msa1124410:intron 25.0%
! TGTTGGATTTAAAAGTGATT+GGG + chr7_3:75584319-75584338 Msa1124410:intron 25.0%
! TAGCATGTATATTACTACTA+TGG - chr7_3:75584444-75584463 None:intergenic 25.0%
!!! TGATTATCTTATTTGGTTTG+TGG + chr7_3:75584489-75584508 Msa1124410:intron 25.0%
!!! GATTATCTTATTTGGTTTGT+GGG + chr7_3:75584490-75584509 Msa1124410:intron 25.0%
! TTACTCAAACAAAGCTAAAT+AGG - chr7_3:75584531-75584550 None:intergenic 25.0%
! AACAACAATCAATAATGAGT+TGG - chr7_3:75584558-75584577 None:intergenic 25.0%
! GATATATGTGCTAAAGATAA+AGG + chr7_3:75584657-75584676 Msa1124410:CDS 25.0%
! CTCTAAATCAATATACTCAT+TGG - chr7_3:75584766-75584785 None:intergenic 25.0%
! ATTAGTAAAAAAAGGATGGA+AGG + chr7_3:75584906-75584925 Msa1124410:CDS 25.0%
!!! TGAGAAAAAGAAGTATCTAA+TGG + chr7_3:75585070-75585089 Msa1124410:CDS 25.0%
! AAAAACAACTAAGATTACCT+CGG - chr7_3:75585112-75585131 None:intergenic 25.0%
!!! AGGTAATCTTAGTTGTTTTT+GGG + chr7_3:75585112-75585131 Msa1124410:intron 25.0%
!!! GTTTTTGGGTTTATTTTAGT+TGG + chr7_3:75585126-75585145 Msa1124410:intron 25.0%
!!! AAAATAAGTTTTGGAATCAC+AGG + chr7_3:75585186-75585205 Msa1124410:intron 25.0%
! GATATTGTGAGAGAATTAAA+AGG + chr7_3:75585210-75585229 Msa1124410:intron 25.0%
! GATACAATTAACTTCGAAAA+TGG + chr7_3:75585232-75585251 Msa1124410:intron 25.0%
! ACTAACATAACATTAACCAA+AGG - chr7_3:75585757-75585776 None:intergenic 25.0%
! GATTAAAGGAGTTAAAATCT+AGG - chr7_3:75585805-75585824 None:intergenic 25.0%
! AATCTACAACTACTAAATTC+GGG - chr7_3:75585859-75585878 None:intergenic 25.0%
! ATTTATGTTCAAACATTTCG+GGG + chr7_3:75585881-75585900 Msa1124410:three_prime_UTR 25.0%
TATACTGTTATTCTGCATTC+TGG + chr7_3:75580772-75580791 Msa1124410:intron 30.0%
CCTAAATGCTAAATAATTGC+TGG - chr7_3:75580844-75580863 None:intergenic 30.0%
CCAGCAATTATTTAGCATTT+AGG + chr7_3:75580841-75580860 Msa1124410:intron 30.0%
!! TTACTGATCTACTTTTCACT+GGG + chr7_3:75581377-75581396 Msa1124410:intron 30.0%
AATCTATGCGATTCATCTTA+CGG + chr7_3:75581427-75581446 Msa1124410:intron 30.0%
! TTCTACATAATGGAATTCGA+AGG - chr7_3:75581530-75581549 None:intergenic 30.0%
GAATTCCATTATGTAGAAGA+AGG + chr7_3:75581532-75581551 Msa1124410:intron 30.0%
! TTTTGCCTTCTTCTACATAA+TGG - chr7_3:75581540-75581559 None:intergenic 30.0%
CCATTAATACAAAATGGATG+TGG - chr7_3:75581633-75581652 None:intergenic 30.0%
! CCACATCCATTTTGTATTAA+TGG + chr7_3:75581630-75581649 Msa1124410:intron 30.0%
! CATCCATTTTGTATTAATGG+CGG + chr7_3:75581633-75581652 Msa1124410:intron 30.0%
AATTCTTGTGAGTTAACATG+CGG + chr7_3:75581729-75581748 Msa1124410:intron 30.0%
TAAGAAGAAGATGAAGAAGA+GGG - chr7_3:75581899-75581918 None:intergenic 30.0%
! GGAATTCGAAGACAATTTTA+CGG - chr7_3:75582005-75582024 None:intergenic 30.0%
AATTGTCTTCGAATTCCAAA+TGG + chr7_3:75582008-75582027 Msa1124410:intron 30.0%
!!! TTTTTTTGGAAAACCGTTGT+AGG + chr7_3:75582099-75582118 Msa1124410:intron 30.0%
!! GAAAGTATTTACACCTACAA+CGG - chr7_3:75582115-75582134 None:intergenic 30.0%
TAGGTGTAAATACTTTCTTG+TGG + chr7_3:75582118-75582137 Msa1124410:intron 30.0%
TAAATACTTTCTTGTGGATG+TGG + chr7_3:75582124-75582143 Msa1124410:intron 30.0%
AAATACTTTCTTGTGGATGT+GGG + chr7_3:75582125-75582144 Msa1124410:intron 30.0%
! CTATAAGGTGCTAAATATCT+AGG - chr7_3:75582164-75582183 None:intergenic 30.0%
CTAGATATTATCTCAAAGAG+TGG + chr7_3:75582189-75582208 Msa1124410:intron 30.0%
TATTATCTCAAAGAGTGGAA+TGG + chr7_3:75582194-75582213 Msa1124410:intron 30.0%
! ACAACTCCTTGTAATTTTGA+GGG - chr7_3:75582226-75582245 None:intergenic 30.0%
! AACAACTCCTTGTAATTTTG+AGG - chr7_3:75582227-75582246 None:intergenic 30.0%
TTGGGATATTGAAGAAAAGA+TGG + chr7_3:75582291-75582310 Msa1124410:intron 30.0%
AGGGAAAGAGTAATAACTAA+CGG + chr7_3:75582477-75582496 Msa1124410:intron 30.0%
AATAACTAACGGTGTAAATG+AGG + chr7_3:75582488-75582507 Msa1124410:intron 30.0%
AACAGCTCCAAATAATATGT+CGG - chr7_3:75582645-75582664 None:intergenic 30.0%
! ACATATTATTTGGAGCTGTT+AGG + chr7_3:75582645-75582664 Msa1124410:intron 30.0%
! CATATTATTTGGAGCTGTTA+GGG + chr7_3:75582646-75582665 Msa1124410:intron 30.0%
!!! TTTGTTGCTTTTGATTGCTA+AGG + chr7_3:75582681-75582700 Msa1124410:intron 30.0%
AGATGGAAGATAGCAATATT+TGG + chr7_3:75582888-75582907 Msa1124410:CDS 30.0%
GATGGAAGATAGCAATATTT+GGG + chr7_3:75582889-75582908 Msa1124410:CDS 30.0%
! CAATATTTGGGTTAAGAAAG+AGG + chr7_3:75582901-75582920 Msa1124410:CDS 30.0%
ACTTAGAGATCAAAGAAGTT+TGG + chr7_3:75582979-75582998 Msa1124410:CDS 30.0%
CTTAGAGATCAAAGAAGTTT+GGG + chr7_3:75582980-75582999 Msa1124410:CDS 30.0%
! ATTCTCAGTCAAAATGGATT+TGG + chr7_3:75583148-75583167 Msa1124410:CDS 30.0%
GCTTATCACAACAAAAGAAA+AGG - chr7_3:75583386-75583405 None:intergenic 30.0%
CAATATAGGCATTCATAATC+AGG - chr7_3:75583483-75583502 None:intergenic 30.0%
TTGGTTAGTGATGTTCATAT+GGG - chr7_3:75583684-75583703 None:intergenic 30.0%
GTCATATCAGATATTGAAAC+AGG + chr7_3:75583752-75583771 Msa1124410:intron 30.0%
TTATGTCTAGTACTATGCTT+TGG + chr7_3:75583878-75583897 Msa1124410:intron 30.0%
! TGGTTGTGTTTTTCATTTGT+AGG + chr7_3:75583898-75583917 Msa1124410:intron 30.0%
!!! GACCCAAACTGTTATTTTTT+AGG + chr7_3:75583920-75583939 Msa1124410:intron 30.0%
GTTGCCTGAAATTAAGTTAA+GGG - chr7_3:75583964-75583983 None:intergenic 30.0%
AGTTGCCTGAAATTAAGTTA+AGG - chr7_3:75583965-75583984 None:intergenic 30.0%
TAACTTAATTTCAGGCAACT+TGG + chr7_3:75583965-75583984 Msa1124410:intron 30.0%
CATATGGAAATGAACCAAAA+GGG - chr7_3:75584019-75584038 None:intergenic 30.0%
! TTTGAAGCTTGAAATCCATA+TGG - chr7_3:75584035-75584054 None:intergenic 30.0%
TTTCCCAATCTTCAAATCTA+TGG + chr7_3:75584068-75584087 Msa1124410:intron 30.0%
AGACCATAGATTTGAAGATT+GGG - chr7_3:75584074-75584093 None:intergenic 30.0%
AAGACCATAGATTTGAAGAT+TGG - chr7_3:75584075-75584094 None:intergenic 30.0%
! TCTAAAATTCATACGCAAAC+AGG - chr7_3:75584103-75584122 None:intergenic 30.0%
GTTACCTGCAATTAAGTTAA+GGG + chr7_3:75584196-75584215 Msa1124410:intron 30.0%
! AATAGGCAACATTAGACTTT+TGG - chr7_3:75584223-75584242 None:intergenic 30.0%
!!! ATGTTGCCTATTTTTTGTAG+TGG + chr7_3:75584231-75584250 Msa1124410:intron 30.0%
TCATGACCACTACAAAAAAT+AGG - chr7_3:75584240-75584259 None:intergenic 30.0%
!!! TAAATTGCTTTTTGGGTCTT+AGG + chr7_3:75584289-75584308 Msa1124410:intron 30.0%
ATTCTGGATTGTTATAGCTA+CGG + chr7_3:75584347-75584366 Msa1124410:intron 30.0%
CTTTCAATAAGTATATGCCA+TGG + chr7_3:75584387-75584406 Msa1124410:intron 30.0%
! GTATATGCCATGGTTTATTT+TGG + chr7_3:75584397-75584416 Msa1124410:intron 30.0%
GTAGTAATATACATGCTAGT+CGG + chr7_3:75584446-75584465 Msa1124410:intron 30.0%
ATATGTGCTAAAGATAAAGG+AGG + chr7_3:75584660-75584679 Msa1124410:CDS 30.0%
AATGTAGATGAAGATGAAGA+AGG + chr7_3:75584738-75584757 Msa1124410:CDS 30.0%
! TTTTTCTTTGTTGCAGAACT+TGG - chr7_3:75584792-75584811 None:intergenic 30.0%
ACCAATTGATTGCTTTATAG+CGG - chr7_3:75585001-75585020 None:intergenic 30.0%
!! TTGAGAATCGCTATTTTGTT+TGG - chr7_3:75585035-75585054 None:intergenic 30.0%
! TACTTCTTTTTCTCACTCAA+CGG - chr7_3:75585065-75585084 None:intergenic 30.0%
!! GAGGTAATCTTAGTTGTTTT+TGG + chr7_3:75585111-75585130 Msa1124410:intron 30.0%
ATAGGTTGTGTAACACTTAT+TGG + chr7_3:75585391-75585410 Msa1124410:intron 30.0%
TTGTCCACAAAAAATCAAGT+TGG - chr7_3:75585453-75585472 None:intergenic 30.0%
!!! GATTTTTTGTGGACAACTAT+TGG + chr7_3:75585457-75585476 Msa1124410:intron 30.0%
! TCTTGTTAGTTGGTATACAT+GGG + chr7_3:75585589-75585608 Msa1124410:intron 30.0%
ATCTACAACTACTAAATTCG+GGG - chr7_3:75585858-75585877 None:intergenic 30.0%
AAGGAATTTCACAATTGAGG+TGG - chr7_3:75579895-75579914 None:intergenic 35.0%
AGCAAGGAATTTCACAATTG+AGG - chr7_3:75579898-75579917 None:intergenic 35.0%
TCAATTGTGAAATTCCTTGC+TGG + chr7_3:75579897-75579916 Msa1124410:five_prime_UTR 35.0%
GACATAATGAACAATAAGCG+TGG - chr7_3:75580111-75580130 None:intergenic 35.0%
ATCGAAATTGCAAACACATC+CGG + chr7_3:75580301-75580320 Msa1124410:intron 35.0%
!! GTGTTTTCTGTTGGTTGATA+CGG + chr7_3:75580393-75580412 Msa1124410:intron 35.0%
TTACTAACAAAAGAGAGACC+AGG + chr7_3:75580425-75580444 Msa1124410:intron 35.0%
TACTAACAAAAGAGAGACCA+GGG + chr7_3:75580426-75580445 Msa1124410:intron 35.0%
! TTTCGAGCAAACAACCATTT+TGG - chr7_3:75580521-75580540 None:intergenic 35.0%
GGGTTTGTGTGCATATATAT+TGG + chr7_3:75580692-75580711 Msa1124410:intron 35.0%
ATACATGAAAATGACTAGGC+TGG - chr7_3:75580816-75580835 None:intergenic 35.0%
! TAGTGCTGCTGAATATATAC+TGG - chr7_3:75580892-75580911 None:intergenic 35.0%
TTCAGCAGCACTATTAATGT+TGG + chr7_3:75580899-75580918 Msa1124410:intron 35.0%
ATGTTGGAGAAATGTGTTAC+TGG + chr7_3:75580915-75580934 Msa1124410:intron 35.0%
TAAGCAAAAGTGAAAACGCT+TGG - chr7_3:75581024-75581043 None:intergenic 35.0%
TTTCACCTTCAATTCTCTCA+AGG + chr7_3:75581063-75581082 Msa1124410:five_prime_UTR 35.0%
ACTAACCTTGAGAGAATTGA+AGG - chr7_3:75581071-75581090 None:intergenic 35.0%
TTCATTGATCTCTACAGAGA+GGG - chr7_3:75581200-75581219 None:intergenic 35.0%
TTTCATTGATCTCTACAGAG+AGG - chr7_3:75581201-75581220 None:intergenic 35.0%
! GAGAAACTTCAGGATTTTCT+TGG + chr7_3:75581226-75581245 Msa1124410:intron 35.0%
!! CTTACTGATCTACTTTTCAC+TGG + chr7_3:75581376-75581395 Msa1124410:intron 35.0%
TCTCCGCCATTAATACAAAA+TGG - chr7_3:75581639-75581658 None:intergenic 35.0%
! GAAGCCTTTATTTGATGCTT+TGG + chr7_3:75581770-75581789 Msa1124410:intron 35.0%
! CGATGATTCTCAATTTTCAC+TGG - chr7_3:75581825-75581844 None:intergenic 35.0%
ATAACCTTGTCATGACTTTG+TGG + chr7_3:75581845-75581864 Msa1124410:intron 35.0%
GTAAGAAGAAGATGAAGAAG+AGG - chr7_3:75581900-75581919 None:intergenic 35.0%
! GTTCTTCTTGGTTGCATTTT+TGG + chr7_3:75581934-75581953 Msa1124410:intron 35.0%
!! TGCATTTTTGGATCCCATTA+TGG + chr7_3:75581946-75581965 Msa1124410:intron 35.0%
!! ATTTTTGGATCCCATTATGG+AGG + chr7_3:75581949-75581968 Msa1124410:intron 35.0%
ATACTCATCGTACTACCATT+TGG - chr7_3:75582026-75582045 None:intergenic 35.0%
AAACACCCCTCAAAATTACA+AGG + chr7_3:75582217-75582236 Msa1124410:intron 35.0%
! CAACTCCTTGTAATTTTGAG+GGG - chr7_3:75582225-75582244 None:intergenic 35.0%
ATTACATTCCATGCACTTGA+AGG - chr7_3:75582260-75582279 None:intergenic 35.0%
GTGCATGGAATGTAATTGAA+AGG + chr7_3:75582264-75582283 Msa1124410:intron 35.0%
!! AATTTTAGAGGCTCAAGACT+TGG + chr7_3:75582413-75582432 Msa1124410:intron 35.0%
! GCTTTTATCTGTTGTTGATG+AGG + chr7_3:75582437-75582456 Msa1124410:intron 35.0%
AGGAGTTAACCAACTAACAA+AGG + chr7_3:75582457-75582476 Msa1124410:intron 35.0%
GGAGTTAACCAACTAACAAA+GGG + chr7_3:75582458-75582477 Msa1124410:intron 35.0%
TACTCTTTCCCTTTGTTAGT+TGG - chr7_3:75582469-75582488 None:intergenic 35.0%
! TTCTTTTTCCCTTTGTCTTG+CGG - chr7_3:75582868-75582887 None:intergenic 35.0%
GACAAAGGGAAAAAGAAAGA+TGG + chr7_3:75582871-75582890 Msa1124410:CDS 35.0%
! TTTTCCAAATTCCGTTAGTC+TGG - chr7_3:75583009-75583028 None:intergenic 35.0%
! TCAGTCAAAATGGATTTGGT+TGG + chr7_3:75583152-75583171 Msa1124410:CDS 35.0%
! CAGTCAAAATGGATTTGGTT+GGG + chr7_3:75583153-75583172 Msa1124410:CDS 35.0%
TGCATGGAATGAATATGTCA+AGG + chr7_3:75583213-75583232 Msa1124410:CDS 35.0%
AAGGTTGTCATCATCAATGA+AGG - chr7_3:75583337-75583356 None:intergenic 35.0%
ATCACAACAAAAGAAAAGGG+AGG - chr7_3:75583382-75583401 None:intergenic 35.0%
AACAAAAAACACCAGTGTAG+AGG - chr7_3:75583418-75583437 None:intergenic 35.0%
!!! ACACTGGTGTTTTTTGTTAG+AGG + chr7_3:75583420-75583439 Msa1124410:intron 35.0%
!!! CACTGGTGTTTTTTGTTAGA+GGG + chr7_3:75583421-75583440 Msa1124410:intron 35.0%
!! TTAGAGGGGGGTATTATATA+CGG - chr7_3:75583647-75583666 None:intergenic 35.0%
TGGTTAGTGATGTTCATATG+GGG - chr7_3:75583683-75583702 None:intergenic 35.0%
GTTGGTTAGTGATGTTCATA+TGG - chr7_3:75583685-75583704 None:intergenic 35.0%
TGGTCCCTTAACTTAATTTC+AGG + chr7_3:75583957-75583976 Msa1124410:intron 35.0%
CCATATGGAAATGAACCAAA+AGG - chr7_3:75584020-75584039 None:intergenic 35.0%
!!! CCTTTTGGTTCATTTCCATA+TGG + chr7_3:75584017-75584036 Msa1124410:intron 35.0%
CTTAATTGCAGGTAACGATT+TGG - chr7_3:75584192-75584211 None:intergenic 35.0%
CGTTACCTGCAATTAAGTTA+AGG + chr7_3:75584195-75584214 Msa1124410:intron 35.0%
AAGTGATTGGGTTTAGATTC+TGG + chr7_3:75584331-75584350 Msa1124410:intron 35.0%
TTCTGGATTGTTATAGCTAC+GGG + chr7_3:75584348-75584367 Msa1124410:intron 35.0%
ACCACAACCAAAATAAACCA+TGG - chr7_3:75584407-75584426 None:intergenic 35.0%
!! ATTTGGTTTGTGGGCAAAAA+AGG + chr7_3:75584499-75584518 Msa1124410:intron 35.0%
AAACAAAGCTAAATAGGACC+TGG - chr7_3:75584525-75584544 None:intergenic 35.0%
GATCTTAAATCGGAATCGTT+TGG - chr7_3:75584613-75584632 None:intergenic 35.0%
AATAAGGGTAGAGACAAAGA+GGG + chr7_3:75584831-75584850 Msa1124410:CDS 35.0%
!! GCAAGAAGTGTTGAATGAAA+TGG + chr7_3:75584947-75584966 Msa1124410:CDS 35.0%
TCCGCTATAAAGCAATCAAT+TGG + chr7_3:75584997-75585016 Msa1124410:CDS 35.0%
AACATGAACAAAGTCACTCT+AGG - chr7_3:75585349-75585368 None:intergenic 35.0%
GATTGCATTGTAGACTCAAT+AGG + chr7_3:75585373-75585392 Msa1124410:intron 35.0%
TGTGTAACACTTATTGGTGA+AGG + chr7_3:75585397-75585416 Msa1124410:intron 35.0%
!! CACAAAAAATCAAGTTGGCA+TGG - chr7_3:75585448-75585467 None:intergenic 35.0%
!!! CATGCCAACTTGATTTTTTG+TGG + chr7_3:75585446-75585465 Msa1124410:intron 35.0%
! CTCTTGTTAGTTGGTATACA+TGG + chr7_3:75585588-75585607 Msa1124410:intron 35.0%
AATAATTCCCGCAACAAATG+CGG - chr7_3:75585731-75585750 None:intergenic 35.0%
TCTACAACTACTAAATTCGG+GGG - chr7_3:75585857-75585876 None:intergenic 35.0%
ACGAAGTAGTTGAAGGAGTA+CGG - chr7_3:75579987-75580006 None:intergenic 40.0%
TGAACAATAAGCGTGGTGTT+GGG - chr7_3:75580104-75580123 None:intergenic 40.0%
ATGAACAATAAGCGTGGTGT+TGG - chr7_3:75580105-75580124 None:intergenic 40.0%
GTAGTTAGTGTTATCCAGCA+GGG - chr7_3:75580605-75580624 None:intergenic 40.0%
TTCGTTACTTGCAGCTTTCT+TGG + chr7_3:75580986-75581005 Msa1124410:intron 40.0%
AAAGTGAAAACGCTTGGAGT+AGG - chr7_3:75581018-75581037 None:intergenic 40.0%
GAGGACAATGAAGAAGAAGA+GGG - chr7_3:75581578-75581597 None:intergenic 40.0%
TGAGGACAATGAAGAAGAAG+AGG - chr7_3:75581579-75581598 None:intergenic 40.0%
AGTAGAACACAGTAGTGATG+AGG - chr7_3:75581597-75581616 None:intergenic 40.0%
! GGCTCCAAAGCATCAAATAA+AGG - chr7_3:75581777-75581796 None:intergenic 40.0%
TTCACCACAAAGTCATGACA+AGG - chr7_3:75581852-75581871 None:intergenic 40.0%
CTTCTTACCTGTTCTCATAG+TGG + chr7_3:75581912-75581931 Msa1124410:intron 40.0%
AGAAGAACCACTATGAGAAC+AGG - chr7_3:75581922-75581941 None:intergenic 40.0%
GTTCTCATAGTGGTTCTTCT+TGG + chr7_3:75581922-75581941 Msa1124410:intron 40.0%
TCGAGAATCTCCTCCATAAT+GGG - chr7_3:75581962-75581981 None:intergenic 40.0%
GTGGATGTGGGATATACAAA+TGG + chr7_3:75582137-75582156 Msa1124410:intron 40.0%
AAGGAATCTCATAGATTGCG+TGG + chr7_3:75582700-75582719 Msa1124410:intron 40.0%
TCTAGTCTAGTCTATGCAAG+AGG + chr7_3:75582836-75582855 Msa1124410:CDS 40.0%
CTAGTCTATGCAAGAGGTTT+AGG + chr7_3:75582842-75582861 Msa1124410:CDS 40.0%
AGCTTACTTCACGTGGAATT+TGG + chr7_3:75582931-75582950 Msa1124410:CDS 40.0%
TGAAAAACCGCGTCAAACTT+TGG + chr7_3:75583098-75583117 Msa1124410:CDS 40.0%
AAACTTTGGCGAAGATGGTA+TGG + chr7_3:75583112-75583131 Msa1124410:CDS 40.0%
AACTTTGGCGAAGATGGTAT+GGG + chr7_3:75583113-75583132 Msa1124410:CDS 40.0%
! CAAAATGGATTTGGTTGGGA+TGG + chr7_3:75583157-75583176 Msa1124410:CDS 40.0%
! CCATGCATTTTCATCTTCGA+CGG - chr7_3:75583200-75583219 None:intergenic 40.0%
AAAAGAAAAGGGAGGAAGCA+TGG - chr7_3:75583374-75583393 None:intergenic 40.0%
CAGACTTGTGTAAGGAATCA+TGG - chr7_3:75583601-75583620 None:intergenic 40.0%
GGTATTATATACGGGTAGGA+TGG - chr7_3:75583638-75583657 None:intergenic 40.0%
!! TAGAGGGGGGTATTATATAC+GGG - chr7_3:75583646-75583665 None:intergenic 40.0%
TCATGTGATTCTGTTAGAGG+GGG - chr7_3:75583660-75583679 None:intergenic 40.0%
GTCATGTGATTCTGTTAGAG+GGG - chr7_3:75583661-75583680 None:intergenic 40.0%
GGTCATGTGATTCTGTTAGA+GGG - chr7_3:75583662-75583681 None:intergenic 40.0%
TGCATATCCAAGAAGAGAGT+GGG - chr7_3:75583727-75583746 None:intergenic 40.0%
ATGCATATCCAAGAAGAGAG+TGG - chr7_3:75583728-75583747 None:intergenic 40.0%
TGGTCCCTTAACTTAATTGC+AGG - chr7_3:75584203-75584222 None:intergenic 40.0%
TCTGGATTGTTATAGCTACG+GGG + chr7_3:75584349-75584368 Msa1124410:intron 40.0%
!!! GCCATGGTTTATTTTGGTTG+TGG + chr7_3:75584403-75584422 Msa1124410:intron 40.0%
TGTGCTAAAGATAAAGGAGG+TGG + chr7_3:75584663-75584682 Msa1124410:CDS 40.0%
AGTAGAACGTGCAGTTAATG+TGG + chr7_3:75584692-75584711 Msa1124410:CDS 40.0%
ACAATGTACCTGTGCCAATA+AGG + chr7_3:75584815-75584834 Msa1124410:CDS 40.0%
CAATGTACCTGTGCCAATAA+GGG + chr7_3:75584816-75584835 Msa1124410:CDS 40.0%
CTCTTTGTCTCTACCCTTAT+TGG - chr7_3:75584832-75584851 None:intergenic 40.0%
CAATAAGGGTAGAGACAAAG+AGG + chr7_3:75584830-75584849 Msa1124410:CDS 40.0%
ATAAGGGTAGAGACAAAGAG+GGG + chr7_3:75584832-75584851 Msa1124410:CDS 40.0%
GGAAGGAAATACTCCAAAAG+AGG + chr7_3:75584923-75584942 Msa1124410:CDS 40.0%
! AACACTTCTTGCACCTCTTT+TGG - chr7_3:75584939-75584958 None:intergenic 40.0%
TAGAAATCCCGGACTTACAA+AGG + chr7_3:75585320-75585339 Msa1124410:intron 40.0%
TAGGATTCCTTTGTAAGTCC+GGG - chr7_3:75585330-75585349 None:intergenic 40.0%
CTAGGATTCCTTTGTAAGTC+CGG - chr7_3:75585331-75585350 None:intergenic 40.0%
TCACTAGTGCTCTTGTTAGT+TGG + chr7_3:75585579-75585598 Msa1124410:intron 40.0%
TTTGTGCAGTTGACGATTGA+AGG + chr7_3:75585665-75585684 Msa1124410:intron 40.0%
TGAAGGATGATAACTTGAGC+TGG + chr7_3:75585682-75585701 Msa1124410:three_prime_UTR 40.0%
! TCTGTATACCGCATTTGTTG+CGG + chr7_3:75585720-75585739 Msa1124410:three_prime_UTR 40.0%
TGCGGGAATTATTACACCTT+TGG + chr7_3:75585738-75585757 Msa1124410:three_prime_UTR 40.0%
! CGAAGTAGTTGAAGGAGTAC+GGG - chr7_3:75579986-75580005 None:intergenic 45.0%
AAAAGAGAGACCAGGGAAGT+AGG + chr7_3:75580433-75580452 Msa1124410:intron 45.0%
AAAGAGAGACCAGGGAAGTA+GGG + chr7_3:75580434-75580453 Msa1124410:intron 45.0%
CAAACAAATCCCTACTTCCC+TGG - chr7_3:75580446-75580465 None:intergenic 45.0%
! TTTTGGTCCCTGAATGTACG+CGG - chr7_3:75580504-75580523 None:intergenic 45.0%
CGTACATTCAGGGACCAAAA+TGG + chr7_3:75580504-75580523 Msa1124410:intron 45.0%
! TAAGTTGTTTCAGACCCTGC+TGG + chr7_3:75580588-75580607 Msa1124410:intron 45.0%
CGTAGTTAGTGTTATCCAGC+AGG - chr7_3:75580606-75580625 None:intergenic 45.0%
GTTACTTGCAGCTTTCTTGG+CGG + chr7_3:75580989-75581008 Msa1124410:intron 45.0%
TTGTGCTTCGTGTATGTGCT+AGG + chr7_3:75581349-75581368 Msa1124410:intron 45.0%
CTATGCGATTCATCTTACGG+AGG + chr7_3:75581430-75581449 Msa1124410:intron 45.0%
TGGCGGAGAGAATGTTGTAT+TGG + chr7_3:75581650-75581669 Msa1124410:intron 45.0%
! TCGTTGATGGGTGCAAAAGA+AGG + chr7_3:75581701-75581720 Msa1124410:intron 45.0%
CTCGAGAATCTCCTCCATAA+TGG - chr7_3:75581963-75581982 None:intergenic 45.0%
ATTTCCGTCCTTCAAGTGCA+TGG + chr7_3:75582249-75582268 Msa1124410:intron 45.0%
CATTCCATGCACTTGAAGGA+CGG - chr7_3:75582256-75582275 None:intergenic 45.0%
ATGCAAGAGCTTACTTCACG+TGG + chr7_3:75582924-75582943 Msa1124410:CDS 45.0%
CTTCACGTGGAATTTGGACA+TGG + chr7_3:75582937-75582956 Msa1124410:CDS 45.0%
ATCTTCGCCAAAGTTTGACG+CGG - chr7_3:75583108-75583127 None:intergenic 45.0%
CCGTCGAAGATGAAAATGCA+TGG + chr7_3:75583197-75583216 Msa1124410:CDS 45.0%
CATGGCACGGATCAGAATAA+AGG - chr7_3:75583356-75583375 None:intergenic 45.0%
! AGGGCATTCAGACTTGTGTA+AGG - chr7_3:75583609-75583628 None:intergenic 45.0%
CATGTGATTCTGTTAGAGGG+GGG - chr7_3:75583659-75583678 None:intergenic 45.0%
GGGTCATGTGATTCTGTTAG+AGG - chr7_3:75583663-75583682 None:intergenic 45.0%
GCATATCCAAGAAGAGAGTG+GGG - chr7_3:75583726-75583745 None:intergenic 45.0%
GGGTCTTAGGTCATGTTTGT+TGG + chr7_3:75584302-75584321 Msa1124410:intron 45.0%
CTGGATTGTTATAGCTACGG+GGG + chr7_3:75584350-75584369 Msa1124410:intron 45.0%
!!! GCTTCTATGTTTTGAGACCG+AGG + chr7_3:75585092-75585111 Msa1124410:exon 45.0%
CGTAGGTCTCTTAGAAATCC+CGG + chr7_3:75585309-75585328 Msa1124410:intron 45.0%
! CTGTATACCGCATTTGTTGC+GGG + chr7_3:75585721-75585740 Msa1124410:three_prime_UTR 45.0%
CAACTACTAAATTCGGGGGT+TGG - chr7_3:75585853-75585872 None:intergenic 45.0%
!!! ATGATATTTTATTTATTTAA+TGG + chr7_3:75582047-75582066 Msa1124410:intron 5.0%
!! AAATGAAATTAAAAAAATAA+AGG + chr7_3:75584165-75584184 Msa1124410:intron 5.0%
AACTCTCCTCCGTACTCTCT+CGG + chr7_3:75579920-75579939 Msa1124410:five_prime_UTR 50.0%
GGCGAAGACGAAGTAGTTGA+AGG - chr7_3:75579994-75580013 None:intergenic 50.0%
TTCGTCTTCGCCTGTTCTTC+TGG + chr7_3:75580002-75580021 Msa1124410:five_prime_UTR 50.0%
CGAGAGCTTACCAGAAGAAC+AGG - chr7_3:75580015-75580034 None:intergenic 50.0%
GAGAGAGAGAGAGAGAGAGA+GGG - chr7_3:75580040-75580059 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG - chr7_3:75580039-75580058 None:intergenic 50.0%
! AGCGTGGTGTTGGGAAACTA+GGG - chr7_3:75580095-75580114 None:intergenic 50.0%
! AAGCGTGGTGTTGGGAAACT+AGG - chr7_3:75580096-75580115 None:intergenic 50.0%
CACTCCATGTGAGTGCTATG+CGG + chr7_3:75580659-75580678 Msa1124410:intron 50.0%
ACTCCATGTGAGTGCTATGC+GGG + chr7_3:75580660-75580679 Msa1124410:intron 50.0%
TGCGATTCATCTTACGGAGG+TGG + chr7_3:75581433-75581452 Msa1124410:intron 50.0%
GGCTTACCTCTCTCGTTGAT+GGG + chr7_3:75581689-75581708 Msa1124410:intron 50.0%
TTTGCACCCATCAACGAGAG+AGG - chr7_3:75581698-75581717 None:intergenic 50.0%
! TTTGGAGCCTCTCGAAAACG+TGG + chr7_3:75581788-75581807 Msa1124410:intron 50.0%
TTGGAGCCTCTCGAAAACGT+GGG + chr7_3:75581789-75581808 Msa1124410:intron 50.0%
!! CATCAACCCACGTTTTCGAG+AGG - chr7_3:75581798-75581817 None:intergenic 50.0%
AGGTTTAGGCCGCAAGACAA+AGG + chr7_3:75582856-75582875 Msa1124410:CDS 50.0%
GGTTTAGGCCGCAAGACAAA+GGG + chr7_3:75582857-75582876 Msa1124410:CDS 50.0%
CATGGAGCGTGTATTAGCTG+AGG + chr7_3:75582955-75582974 Msa1124410:CDS 50.0%
AGTTTGGGTCGCCAGACTAA+CGG + chr7_3:75582995-75583014 Msa1124410:CDS 50.0%
GTCGCCAGACTAACGGAATT+TGG + chr7_3:75583002-75583021 Msa1124410:CDS 50.0%
GCGTCAAACTTTGGCGAAGA+TGG + chr7_3:75583107-75583126 Msa1124410:CDS 50.0%
! AAAAGGGAGGAAGCATGGCA+CGG - chr7_3:75583369-75583388 None:intergenic 50.0%
ACACCAGTGTAGAGGAAGCA+TGG - chr7_3:75583410-75583429 None:intergenic 50.0%
!! GGGGGGTATTATATACGGGT+AGG - chr7_3:75583642-75583661 None:intergenic 50.0%
CCATGTGGGAGAGAATGAGT+TGG - chr7_3:75583703-75583722 None:intergenic 50.0%
CCAACTCATTCTCTCCCACA+TGG + chr7_3:75583700-75583719 Msa1124410:intron 50.0%
GTTTGTGGGCAAAAAAGGCC+AGG + chr7_3:75584504-75584523 Msa1124410:intron 50.0%
GTCTCTACCCTTATTGGCAC+AGG - chr7_3:75584826-75584845 None:intergenic 50.0%
TACGGAGGAGAGTTCCAGCA+AGG - chr7_3:75579914-75579933 None:intergenic 55.0%
GATCGAGCTCCGAGAGAGTA+CGG - chr7_3:75579932-75579951 None:intergenic 55.0%
TCACAACGCCGCGTACATTC+AGG + chr7_3:75580493-75580512 Msa1124410:intron 55.0%
CACAACGCCGCGTACATTCA+GGG + chr7_3:75580494-75580513 Msa1124410:intron 55.0%
CTCCATGTGAGTGCTATGCG+GGG + chr7_3:75580661-75580680 Msa1124410:intron 55.0%
TGCTATGCGGGGCAAAGTCA+GGG + chr7_3:75580672-75580691 Msa1124410:intron 55.0%
GGGCTTACCTCTCTCGTTGA+TGG + chr7_3:75581688-75581707 Msa1124410:intron 55.0%
ACGGGTAGGATGGTGTGTGA+GGG - chr7_3:75583628-75583647 None:intergenic 55.0%
TACGGGTAGGATGGTGTGTG+AGG - chr7_3:75583629-75583648 None:intergenic 55.0%
AGAAGAGAGTGGGGCCATGT+GGG - chr7_3:75583717-75583736 None:intergenic 55.0%
AAGAAGAGAGTGGGGCCATG+TGG - chr7_3:75583718-75583737 None:intergenic 55.0%
ACATGGCCCCACTCTCTTCT+TGG + chr7_3:75583717-75583736 Msa1124410:intron 55.0%
TGCCCCGCATAGCACTCACA+TGG - chr7_3:75580666-75580685 None:intergenic 60.0%
GTGCTATGCGGGGCAAAGTC+AGG + chr7_3:75580671-75580690 Msa1124410:intron 60.0%
GCGCCATGCTTCCTCTACAC+TGG + chr7_3:75583404-75583423 Msa1124410:intron 60.0%
! CGAGCTCCGAGAGAGTACGG+AGG - chr7_3:75579929-75579948 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 75579879 75585915 75579879 ID=Msa1124410;Name=Msa1124410
chr7_3 mRNA 75579879 75585915 75579879 ID=Msa1124410-mRNA-1;Parent=Msa1124410;Name=Msa1124410-mRNA-1;_AED=0.03;_eAED=0.03;_QI=232|1|1|1|0.25|0.2|5|249|304
chr7_3 exon 75579879 75580023 75579879 ID=Msa1124410-mRNA-1:exon:20324;Parent=Msa1124410-mRNA-1
chr7_3 exon 75581000 75581084 75581000 ID=Msa1124410-mRNA-1:exon:20325;Parent=Msa1124410-mRNA-1
chr7_3 exon 75582828 75583234 75582828 ID=Msa1124410-mRNA-1:exon:20326;Parent=Msa1124410-mRNA-1
chr7_3 exon 75584597 75585113 75584597 ID=Msa1124410-mRNA-1:exon:20327;Parent=Msa1124410-mRNA-1
chr7_3 exon 75585674 75585915 75585674 ID=Msa1124410-mRNA-1:exon:20328;Parent=Msa1124410-mRNA-1
chr7_3 five_prime_UTR 75579879 75580023 75579879 ID=Msa1124410-mRNA-1:five_prime_utr;Parent=Msa1124410-mRNA-1
chr7_3 five_prime_UTR 75581000 75581084 75581000 ID=Msa1124410-mRNA-1:five_prime_utr;Parent=Msa1124410-mRNA-1
chr7_3 five_prime_UTR 75582828 75582829 75582828 ID=Msa1124410-mRNA-1:five_prime_utr;Parent=Msa1124410-mRNA-1
chr7_3 CDS 75582830 75583234 75582830 ID=Msa1124410-mRNA-1:cds;Parent=Msa1124410-mRNA-1
chr7_3 CDS 75584597 75585106 75584597 ID=Msa1124410-mRNA-1:cds;Parent=Msa1124410-mRNA-1
chr7_3 three_prime_UTR 75585107 75585113 75585107 ID=Msa1124410-mRNA-1:three_prime_utr;Parent=Msa1124410-mRNA-1
chr7_3 three_prime_UTR 75585674 75585915 75585674 ID=Msa1124410-mRNA-1:three_prime_utr;Parent=Msa1124410-mRNA-1
Gene Sequence

>Msa1124410

ATGAATTCTAGTCTAGTCTATGCAAGAGGTTTAGGCCGCAAGACAAAGGGAAAAAGAAAGATGGAAGATAGCAATATTTGGGTTAAGAAAGAGGATGCAAGAGCTTACTTCACGTGGAATTTGGACATGGAGCGTGTATTAGCTGAGGCACTTAGAGATCAAAGAAGTTTGGGTCGCCAGACTAACGGAATTTGGAAAACAGAAGCATACAAAGCTGCAGCTGATGTGTTGTCGACACATTTTAATGTTCAGCTTATCGGAGAGAATGTGAAAAACCGCGTCAAACTTTGGCGAAGATGGTATGGGATAGTTAATGATATTCTCAGTCAAAATGGATTTGGTTGGGATGGCACAAACTGTATGATTACCGTCGAAGATGAAAATGCATGGAATGAATATGTCAAGTCTCATGAAGAAGCCAAACGATTCCGATTTAAGATCATTCTAAATTGGAATGACATTGTAGATATATGTGCTAAAGATAAAGGAGGTGGAATTCAAGTAGAACGTGCAGTTAATGTGGATGATGTCACGAGCAAAGATGCAAATGTAGATGAAGATGAAGAAGGTTCCAATGAGTATATTGATTTAGAGAAACCAAGTTCTGCAACAAAGAAAAAAGTACAATGTACCTGTGCCAATAAGGGTAGAGACAAAGAGGGGATGATCGACTCTATGAGAGAAGTTGCTGAGATATTGAAAGACTTTGTACAAATTAGTAAAAAAAGGATGGAAGGAAATACTCCAAAAGAGGTGCAAGAAGTGTTGAATGAAATGGAGATGATTATTGATATTGATGACACACTCCGCTATAAAGCAATCAATTGGTTGATTGACAATCCAAACAAAATAGCGATTCTCAAAGCTCTTCCGTTGAGTGAGAAAAAGAAGTATCTAATGGCTTCTATGTTTTGA

Protein sequence

>Msa1124410

MNSSLVYARGLGRKTKGKRKMEDSNIWVKKEDARAYFTWNLDMERVLAEALRDQRSLGRQTNGIWKTEAYKAAADVLSTHFNVQLIGENVKNRVKLWRRWYGIVNDILSQNGFGWDGTNCMITVEDENAWNEYVKSHEEAKRFRFKIILNWNDIVDICAKDKGGGIQVERAVNVDDVTSKDANVDEDEEGSNEYIDLEKPSSATKKKVQCTCANKGRDKEGMIDSMREVAEILKDFVQISKKRMEGNTPKEVQEVLNEMEMIIDIDDTLRYKAINWLIDNPNKIAILKALPLSEKKKYLMASMF*