Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0680200 | XP_013455812.1 | 94.709 | 189 | 3 | 1 | 1 | 182 | 1 | 189 | 4.73e-130 | 372 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0680200 | sp|P0CQ26|ATP23_CRYNJ | 44.586 | 157 | 78 | 4 | 32 | 180 | 69 | 224 | 4.78e-40 | 138 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0680200 | I3T694 | 94.709 | 189 | 3 | 1 | 1 | 182 | 1 | 189 | 2.26e-130 | 372 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002230 | Msa0680200 | 0.842342 | 2.741595e-58 | -8.615850e-47 |
| Msa0006110 | Msa0680200 | 0.808799 | 2.593306e-50 | -8.615850e-47 |
| Msa0006390 | Msa0680200 | 0.800835 | 1.195932e-48 | -8.615850e-47 |
| Msa0014710 | Msa0680200 | 0.807800 | 4.235311e-50 | -8.615850e-47 |
| Msa0020410 | Msa0680200 | 0.812757 | 3.610173e-51 | -8.615850e-47 |
| Msa0021210 | Msa0680200 | 0.818829 | 1.598291e-52 | -8.615850e-47 |
| Msa0026910 | Msa0680200 | 0.815742 | 7.911554e-52 | -8.615850e-47 |
| Msa0031340 | Msa0680200 | 0.809360 | 1.966173e-50 | -8.615850e-47 |
| Msa0037880 | Msa0680200 | 0.815845 | 7.502675e-52 | -8.615850e-47 |
| Msa0044000 | Msa0680200 | 0.809130 | 2.202761e-50 | -8.615850e-47 |
| Msa0061080 | Msa0680200 | 0.803150 | 3.998425e-49 | -8.615850e-47 |
| Msa0075880 | Msa0680200 | 0.821817 | 3.299282e-53 | -8.615850e-47 |
| Msa0078900 | Msa0680200 | 0.801175 | 1.019110e-48 | -8.615850e-47 |
| Msa0090360 | Msa0680200 | 0.802482 | 5.493858e-49 | -8.615850e-47 |
| Msa0114430 | Msa0680200 | 0.824738 | 6.860761e-54 | -8.615850e-47 |
| Msa0610430 | Msa0680200 | 0.812957 | 3.264740e-51 | -8.615850e-47 |
| Msa0633400 | Msa0680200 | 0.805765 | 1.139769e-49 | -8.615850e-47 |
| Msa0641670 | Msa0680200 | 0.800423 | 1.451523e-48 | -8.615850e-47 |
| Msa0657580 | Msa0680200 | 0.822516 | 2.271555e-53 | -8.615850e-47 |
| Msa0665170 | Msa0680200 | 0.801917 | 7.180316e-49 | -8.615850e-47 |
| Msa0680200 | Msa0688480 | 0.800294 | 1.541792e-48 | -8.615850e-47 |
| Msa0680200 | Msa0701010 | 0.802058 | 6.717231e-49 | -8.615850e-47 |
| Msa0680200 | Msa0711790 | 0.808337 | 3.255304e-50 | -8.615850e-47 |
| Msa0680200 | Msa0715700 | 0.804903 | 1.727735e-49 | -8.615850e-47 |
| Msa0680200 | Msa0731940 | 0.801920 | 7.171569e-49 | -8.615850e-47 |
| Msa0680200 | Msa0739280 | 0.818658 | 1.747175e-52 | -8.615850e-47 |
| Msa0680200 | Msa0740520 | 0.805850 | 1.093708e-49 | -8.615850e-47 |
| Msa0680200 | Msa0743720 | 0.807908 | 4.016035e-50 | -8.615850e-47 |
| Msa0680200 | Msa0747100 | 0.801515 | 8.683260e-49 | -8.615850e-47 |
| Msa0680200 | Msa0750650 | 0.816585 | 5.126931e-52 | -8.615850e-47 |
| Msa0680200 | Msa0777230 | 0.807782 | 4.271211e-50 | -8.615850e-47 |
| Msa0680200 | Msa0794510 | -0.806401 | 8.374664e-50 | -8.615850e-47 |
| Msa0680200 | Msa0800380 | 0.819222 | 1.300977e-52 | -8.615850e-47 |
| Msa0680200 | Msa0803620 | 0.803886 | 2.813613e-49 | -8.615850e-47 |
| Msa0680200 | Msa0808080 | 0.824346 | 8.486065e-54 | -8.615850e-47 |
| Msa0680200 | Msa0810220 | 0.825313 | 5.018058e-54 | -8.615850e-47 |
| Msa0680200 | Msa0832150 | 0.803823 | 2.899897e-49 | -8.615850e-47 |
| Msa0680200 | Msa0832340 | 0.816463 | 5.459795e-52 | -8.615850e-47 |
| Msa0680200 | Msa0844410 | 0.821495 | 3.916319e-53 | -8.615850e-47 |
| Msa0680200 | Msa0844420 | 0.810674 | 1.024818e-50 | -8.615850e-47 |
| Msa0680200 | Msa0844440 | 0.817440 | 3.294888e-52 | -8.615850e-47 |
| Msa0680200 | Msa0844470 | 0.821727 | 3.461331e-53 | -8.615850e-47 |
| Msa0680200 | Msa0844490 | 0.835158 | 1.974278e-56 | -8.615850e-47 |
| Msa0680200 | Msa0844570 | 0.815809 | 7.641231e-52 | -8.615850e-47 |
| Msa0680200 | Msa0849030 | 0.822837 | 1.913214e-53 | -8.615850e-47 |
| Msa0680200 | Msa0857640 | 0.825326 | 4.983700e-54 | -8.615850e-47 |
| Msa0680200 | Msa0868700 | 0.819540 | 1.100604e-52 | -8.615850e-47 |
| Msa0680200 | Msa0924310 | 0.803141 | 4.016529e-49 | -8.615850e-47 |
| Msa0680200 | Msa0925250 | 0.822008 | 2.980607e-53 | -8.615850e-47 |
| Msa0680200 | Msa0925290 | 0.819870 | 9.255042e-53 | -8.615850e-47 |
| Msa0680200 | Msa0932570 | 0.809060 | 2.280261e-50 | -8.615850e-47 |
| Msa0680200 | Msa0932830 | 0.804595 | 2.003641e-49 | -8.615850e-47 |
| Msa0680200 | Msa0936300 | 0.813515 | 2.462085e-51 | -8.615850e-47 |
| Msa0680200 | Msa0947660 | 0.817301 | 3.539502e-52 | -8.615850e-47 |
| Msa0680200 | Msa0953120 | 0.809617 | 1.731749e-50 | -8.615850e-47 |
| Msa0680200 | Msa0966750 | 0.827740 | 1.323678e-54 | -8.615850e-47 |
| Msa0680200 | Msa0969520 | 0.815038 | 1.134349e-51 | -8.615850e-47 |
| Msa0680200 | Msa0969810 | 0.803174 | 3.953041e-49 | -8.615850e-47 |
| Msa0680200 | Msa0993600 | 0.803820 | 2.904683e-49 | -8.615850e-47 |
| Msa0680200 | Msa1014540 | 0.826462 | 2.677888e-54 | -8.615850e-47 |
| Msa0680200 | Msa1023920 | 0.805759 | 1.142875e-49 | -8.615850e-47 |
| Msa0680200 | Msa1037420 | 0.805030 | 1.625215e-49 | -8.615850e-47 |
| Msa0680200 | Msa1038740 | 0.810374 | 1.190202e-50 | -8.615850e-47 |
| Msa0680200 | Msa1043510 | 0.801162 | 1.025484e-48 | -8.615850e-47 |
| Msa0680200 | Msa1075540 | 0.801478 | 8.835418e-49 | -8.615850e-47 |
| Msa0680200 | Msa1078420 | 0.800902 | 1.158888e-48 | -8.615850e-47 |
| Msa0680200 | Msa1079590 | 0.801765 | 7.715154e-49 | -8.615850e-47 |
| Msa0680200 | Msa1100050 | 0.809952 | 1.467094e-50 | -8.615850e-47 |
| Msa0680200 | Msa1107900 | 0.806061 | 9.876509e-50 | -8.615850e-47 |
| Msa0680200 | Msa1109680 | 0.823374 | 1.433790e-53 | -8.615850e-47 |
| Msa0680200 | Msa1135470 | 0.800070 | 1.712687e-48 | -8.615850e-47 |
| Msa0680200 | Msa1137570 | 0.825375 | 4.850309e-54 | -8.615850e-47 |
| Msa0680200 | Msa1154280 | 0.801197 | 1.008599e-48 | -8.615850e-47 |
| Msa0680200 | Msa1156020 | 0.802059 | 6.712794e-49 | -8.615850e-47 |
| Msa0680200 | Msa1167340 | 0.831307 | 1.797396e-55 | -8.615850e-47 |
| Msa0680200 | Msa1169550 | 0.806473 | 8.086853e-50 | -8.615850e-47 |
| Msa0680200 | Msa1193290 | 0.821754 | 3.413479e-53 | -8.615850e-47 |
| Msa0680200 | Msa1204530 | 0.807078 | 6.024722e-50 | -8.615850e-47 |
| Msa0680200 | Msa1204630 | 0.800171 | 1.633464e-48 | -8.615850e-47 |
| Msa0680200 | Msa1232740 | 0.806515 | 7.923248e-50 | -8.615850e-47 |
| Msa0680200 | Msa1233890 | 0.823289 | 1.500524e-53 | -8.615850e-47 |
| Msa0680200 | Msa1245930 | 0.801988 | 6.944251e-49 | -8.615850e-47 |
| Msa0680200 | Msa1253020 | 0.808282 | 3.342996e-50 | -8.615850e-47 |
| Msa0680200 | Msa1254730 | 0.810531 | 1.100678e-50 | -8.615850e-47 |
| Msa0680200 | Msa1287460 | 0.820231 | 7.649389e-53 | -8.615850e-47 |
| Msa0680200 | Msa1306850 | 0.810915 | 9.091847e-51 | -8.615850e-47 |
| Msa0680200 | Msa1310700 | 0.807151 | 5.814941e-50 | -8.615850e-47 |
| Msa0680200 | Msa1313320 | 0.821305 | 4.332714e-53 | -8.615850e-47 |
| Msa0680200 | Msa1317970 | 0.811567 | 6.562507e-51 | -8.615850e-47 |
| Msa0680200 | Msa1317980 | 0.832889 | 7.306803e-56 | -8.615850e-47 |
| Msa0680200 | Msa1336570 | 0.822720 | 2.036946e-53 | -8.615850e-47 |
| Msa0680200 | Msa1345220 | 0.800716 | 1.264981e-48 | -8.615850e-47 |
| Msa0680200 | Msa1352760 | 0.804208 | 2.412464e-49 | -8.615850e-47 |
| Msa0680200 | Msa1359040 | 0.819206 | 1.311470e-52 | -8.615850e-47 |
| Msa0680200 | Msa1372760 | 0.808856 | 2.521658e-50 | -8.615850e-47 |
| Msa0680200 | Msa1392780 | 0.800326 | 1.519192e-48 | -8.615850e-47 |
| Msa0680200 | Msa1394500 | 0.809079 | 2.259484e-50 | -8.615850e-47 |
| Msa0680200 | Msa1410100 | 0.810170 | 1.316650e-50 | -8.615850e-47 |
| Msa0680200 | Msa1412530 | 0.805407 | 1.354942e-49 | -8.615850e-47 |
| Msa0680200 | Msa1426000 | 0.803839 | 2.877636e-49 | -8.615850e-47 |
| Msa0680200 | Msa1427230 | 0.837897 | 3.962361e-57 | -8.615850e-47 |
| Msa0680200 | Msa1439320 | 0.800310 | 1.530413e-48 | -8.615850e-47 |
| Msa0680200 | Msa1451550 | 0.809786 | 1.592543e-50 | -8.615850e-47 |
| Msa0680200 | Msa1458750 | 0.831060 | 2.067470e-55 | -8.615850e-47 |
| Msa0680200 | Msa1460830 | 0.827626 | 1.409920e-54 | -8.615850e-47 |
| Msa0680200 | Msa1466540 | 0.815273 | 1.006040e-51 | -8.615850e-47 |
| Msa0124060 | Msa0680200 | 0.805706 | 1.172818e-49 | -8.615850e-47 |
| Msa0150840 | Msa0680200 | 0.829570 | 4.780707e-55 | -8.615850e-47 |
| Msa0166560 | Msa0680200 | 0.816726 | 4.765872e-52 | -8.615850e-47 |
| Msa0168500 | Msa0680200 | 0.802132 | 6.485412e-49 | -8.615850e-47 |
| Msa0180500 | Msa0680200 | 0.851031 | 1.156610e-60 | -8.615850e-47 |
| Msa0205510 | Msa0680200 | 0.816874 | 4.414579e-52 | -8.615850e-47 |
| Msa0220740 | Msa0680200 | 0.800396 | 1.469718e-48 | -8.615850e-47 |
| Msa0223010 | Msa0680200 | 0.827822 | 1.265445e-54 | -8.615850e-47 |
| Msa0395790 | Msa0680200 | 0.800944 | 1.136079e-48 | -8.615850e-47 |
| Msa0402790 | Msa0680200 | 0.812155 | 4.886979e-51 | -8.615850e-47 |
| Msa0405370 | Msa0680200 | 0.808760 | 2.643873e-50 | -8.615850e-47 |
| Msa0416300 | Msa0680200 | 0.818112 | 2.323208e-52 | -8.615850e-47 |
| Msa0425790 | Msa0680200 | 0.830170 | 3.413935e-55 | -8.615850e-47 |
| Msa0436490 | Msa0680200 | -0.803036 | 4.222363e-49 | -8.615850e-47 |
| Msa0440750 | Msa0680200 | 0.810929 | 9.027494e-51 | -8.615850e-47 |
| Msa0453350 | Msa0680200 | 0.808355 | 3.225676e-50 | -8.615850e-47 |
| Msa0459260 | Msa0680200 | 0.812030 | 5.203172e-51 | -8.615850e-47 |
| Msa0466390 | Msa0680200 | 0.800299 | 1.538598e-48 | -8.615850e-47 |
| Msa0255080 | Msa0680200 | 0.800901 | 1.159401e-48 | -8.615850e-47 |
| Msa0257460 | Msa0680200 | 0.800936 | 1.140390e-48 | -8.615850e-47 |
| Msa0259370 | Msa0680200 | 0.804445 | 2.152785e-49 | -8.615850e-47 |
| Msa0264150 | Msa0680200 | 0.802731 | 4.882542e-49 | -8.615850e-47 |
| Msa0278110 | Msa0680200 | 0.800979 | 1.117952e-48 | -8.615850e-47 |
| Msa0285170 | Msa0680200 | 0.800233 | 1.586269e-48 | -8.615850e-47 |
| Msa0287650 | Msa0680200 | 0.817628 | 2.987824e-52 | -8.615850e-47 |
| Msa0336320 | Msa0680200 | 0.802958 | 4.382647e-49 | -8.615850e-47 |
| Msa0337620 | Msa0680200 | 0.801127 | 1.042685e-48 | -8.615850e-47 |
| Msa0339620 | Msa0680200 | 0.817109 | 3.909994e-52 | -8.615850e-47 |
| Msa0342750 | Msa0680200 | 0.809653 | 1.701153e-50 | -8.615850e-47 |
| Msa0359030 | Msa0680200 | 0.826800 | 2.224096e-54 | -8.615850e-47 |
| Msa0498650 | Msa0680200 | 0.806917 | 6.516600e-50 | -8.615850e-47 |
| Msa0519000 | Msa0680200 | 0.814858 | 1.243794e-51 | -8.615850e-47 |
| Msa0523940 | Msa0680200 | 0.814176 | 1.759858e-51 | -8.615850e-47 |
| Msa0529040 | Msa0680200 | 0.825375 | 4.851026e-54 | -8.615850e-47 |
| Msa0545700 | Msa0680200 | 0.802041 | 6.770745e-49 | -8.615850e-47 |
| Msa0548920 | Msa0680200 | 0.810927 | 9.036112e-51 | -8.615850e-47 |
| Msa0556060 | Msa0680200 | 0.806852 | 6.724759e-50 | -8.615850e-47 |
| Msa0578860 | Msa0680200 | 0.818554 | 1.845455e-52 | -8.615850e-47 |
| Msa0585230 | Msa0680200 | 0.808739 | 2.671116e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0680200 | MtrunA17_Chr4g0026231 | 94.709 | 189 | 3 | 1 | 1 | 182 | 1 | 189 | 4.35e-134 | 372 |
| Msa0680200 | MtrunA17_Chr4g0026211 | 82.184 | 174 | 24 | 1 | 17 | 183 | 38 | 211 | 9.55e-108 | 306 |
| Msa0680200 | MtrunA17_Chr8g0344281 | 61.905 | 168 | 57 | 2 | 17 | 183 | 5 | 166 | 1.66e-73 | 218 |
| Msa0680200 | MtrunA17_Chr8g0344261 | 65.574 | 61 | 21 | 0 | 79 | 139 | 8 | 68 | 6.64e-24 | 89.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0680200 | AT3G03420.1 | 63.218 | 174 | 57 | 1 | 17 | 183 | 21 | 194 | 1.47e-83 | 245 |
| Msa0680200 | AT3G03420.2 | 51.456 | 103 | 43 | 1 | 17 | 112 | 21 | 123 | 5.67e-36 | 123 |
Find 58 sgRNAs with CRISPR-Local
Find 274 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTGGCTTGATACCATTTA+AGG | 0.083993 | 4_4:-39093848 | Msa0680200:three_prime_UTR |
| CAACCATTGTTTCCATTCTT+TGG | 0.207039 | 4_4:-39093865 | Msa0680200:three_prime_UTR |
| CAAATTCATCCATCTGATTC+AGG | 0.216452 | 4_4:+39096740 | None:intergenic |
| AAATTTATGATCACCTTAAA+TGG | 0.220888 | 4_4:+39093835 | None:intergenic |
| AAAACTGTGTGGTATGTTAC+TGG | 0.326936 | 4_4:-39093900 | Msa0680200:three_prime_UTR |
| GAGAGCTTTCTTCTCAGATT+TGG | 0.355644 | 4_4:+39096696 | None:intergenic |
| GAGATTCTTAAGAGAACATT+TGG | 0.369159 | 4_4:-39096531 | Msa0680200:CDS |
| CATGCTGGCGGTTATGTTCC+CGG | 0.371233 | 4_4:-39096449 | Msa0680200:CDS |
| GGCGGTTATGTTCCCGGTGA+AGG | 0.373640 | 4_4:-39096443 | Msa0680200:CDS |
| TTGAAGAAATTATCTTGAAC+AGG | 0.376229 | 4_4:+39096494 | None:intergenic |
| AAGCATTGATGGAACTTGAT+TGG | 0.379107 | 4_4:-39093139 | Msa0680200:three_prime_UTR |
| AGCTTTCTTCTCAGATTTGG+TGG | 0.407596 | 4_4:+39096699 | None:intergenic |
| AGAGAACATTTGGAGAAAGC+TGG | 0.412333 | 4_4:-39096521 | Msa0680200:CDS |
| TGACTGCCGAGCTGCAAACT+TGG | 0.431388 | 4_4:-39095439 | Msa0680200:CDS |
| AGAATGCTATGGAAGCTGTA+TGG | 0.443268 | 4_4:-39093967 | Msa0680200:CDS |
| GCGGTTATGTTCCCGGTGAA+GGG | 0.449770 | 4_4:-39096442 | Msa0680200:CDS |
| GCCGAGCTGCAAACTTGGAT+TGG | 0.462029 | 4_4:-39095434 | Msa0680200:CDS |
| ATCCAAACGTACCCCTTCAC+CGG | 0.464531 | 4_4:+39096430 | None:intergenic |
| CTTCTCAGATTTGGTGGAGG+AGG | 0.464853 | 4_4:+39096705 | None:intergenic |
| GTGGTGATTGTCATTACAAA+CGG | 0.465275 | 4_4:-39095262 | Msa0680200:CDS |
| AATGGTATCAAGCCAAAGAA+TGG | 0.481182 | 4_4:+39093853 | None:intergenic |
| AAATGCAAGACCAGGTTGAC+CGG | 0.481498 | 4_4:-39095494 | Msa0680200:CDS |
| TCAGCAGCTACAGATGTGTA+AGG | 0.492524 | 4_4:+39096771 | None:intergenic |
| GCTACAGATGTGTAAGGGTT+CGG | 0.506063 | 4_4:+39096777 | None:intergenic |
| TTTCTTCTCAGATTTGGTGG+AGG | 0.506180 | 4_4:+39096702 | None:intergenic |
| CCTTGAAGGAATGCATCAAA+AGG | 0.510031 | 4_4:-39094042 | Msa0680200:intron |
| AAATTCATCCATCTGATTCA+GGG | 0.511495 | 4_4:+39096741 | None:intergenic |
| GAGAACATTTGGAGAAAGCT+GGG | 0.518773 | 4_4:-39096520 | Msa0680200:CDS |
| TGGTGATTGTCATTACAAAC+GGG | 0.520121 | 4_4:-39095261 | Msa0680200:CDS |
| GAATGCTATGGAAGCTGTAT+GGG | 0.521051 | 4_4:-39093966 | Msa0680200:CDS |
| TCCAATCCAAGTTTGCAGCT+CGG | 0.557734 | 4_4:+39095433 | None:intergenic |
| TATATGAAACAGATAAGAGC+TGG | 0.568061 | 4_4:-39095293 | Msa0680200:intron |
| ATGTGAAAGCATGATTCAGA+AGG | 0.568410 | 4_4:-39096668 | Msa0680200:CDS |
| GCAGATGAACCAGAACAAAA+CGG | 0.568490 | 4_4:+39093992 | None:intergenic |
| GCACTATCACCCGGTCAACC+TGG | 0.568691 | 4_4:+39095484 | None:intergenic |
| TTCATCTGCGAAGAATGCTA+TGG | 0.571015 | 4_4:-39093978 | Msa0680200:CDS |
| AAGTATAACCCTGAATCAGA+TGG | 0.574229 | 4_4:-39096749 | Msa0680200:exon |
| TGAAGGAATGCATCAAAAGG+AGG | 0.575266 | 4_4:-39094039 | Msa0680200:intron |
| AATGCAAGACCAGGTTGACC+GGG | 0.583326 | 4_4:-39095493 | Msa0680200:CDS |
| AACAAACCTCACTACAAGCA+TGG | 0.583377 | 4_4:+39095397 | None:intergenic |
| TCTCTTAAGAATCTCGCCGT+TGG | 0.587003 | 4_4:+39096539 | None:intergenic |
| CGGTTATGTTCCCGGTGAAG+GGG | 0.591105 | 4_4:-39096441 | Msa0680200:intron |
| TGCTCACCATGCTTGTAGTG+AGG | 0.595210 | 4_4:-39095403 | Msa0680200:intron |
| TCCAAACGTACCCCTTCACC+GGG | 0.603119 | 4_4:+39096431 | None:intergenic |
| GAAGGAATGCATCAAAAGGA+GGG | 0.603223 | 4_4:-39094038 | Msa0680200:intron |
| CGAGGACATTTGAAAATACG+AGG | 0.614137 | 4_4:-39095230 | Msa0680200:CDS |
| AATTGCGATCAAAATCATGC+TGG | 0.615386 | 4_4:-39096464 | Msa0680200:CDS |
| AAGCCAAAGAATGGAAACAA+TGG | 0.622662 | 4_4:+39093862 | None:intergenic |
| ATAAGAGCTGGTCATCTAAG+TGG | 0.623759 | 4_4:-39095281 | Msa0680200:CDS |
| TCAGATAGAAATGCAAGACC+AGG | 0.632881 | 4_4:-39095502 | Msa0680200:intron |
| TGCGATCAAAATCATGCTGG+CGG | 0.640797 | 4_4:-39096461 | Msa0680200:CDS |
| CAGCAGCTACAGATGTGTAA+GGG | 0.641378 | 4_4:+39096772 | None:intergenic |
| TTGTCATATCTCTCACTGTG+TGG | 0.646442 | 4_4:+39093429 | None:intergenic |
| TTAGCTCGTGCACTATCACC+CGG | 0.650268 | 4_4:+39095475 | None:intergenic |
| TGTGAAAGCATGATTCAGAA+GGG | 0.663566 | 4_4:-39096667 | Msa0680200:CDS |
| ACACAGTGAGAGATATGACA+AGG | 0.728819 | 4_4:-39093427 | Msa0680200:three_prime_UTR |
| GAGGACATTTGAAAATACGA+GGG | 0.729192 | 4_4:-39095229 | Msa0680200:CDS |
| TACAAACGGGAACTTCTACG+AGG | 0.776697 | 4_4:-39095248 | Msa0680200:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTCTGTTTTAAAATTTTA+TGG | - | chr4_4:39095821-39095840 | Msa0680200:intron | 10.0% |
| !! | ATCAATAAAAAAATGATTGA+AGG | + | chr4_4:39094611-39094630 | None:intergenic | 15.0% |
| !! | CTTTCACTATAAAAAAAAAA+AGG | + | chr4_4:39096730-39096749 | None:intergenic | 15.0% |
| !!! | TTTATTTTCGTAAGTTCTAT+AGG | - | chr4_4:39093625-39093644 | Msa0680200:intron | 20.0% |
| !! | TATAAACAAGCTTAATTAAG+AGG | - | chr4_4:39093720-39093739 | Msa0680200:intron | 20.0% |
| !! | TAGTAAATTGAAAACCTTAT+AGG | + | chr4_4:39094358-39094377 | None:intergenic | 20.0% |
| !! | CAAAATCTGTATGAATAAAA+GGG | + | chr4_4:39094566-39094585 | None:intergenic | 20.0% |
| !! | TCAAAATCTGTATGAATAAA+AGG | + | chr4_4:39094567-39094586 | None:intergenic | 20.0% |
| !! | TTTATACACAACATTTACTT+TGG | - | chr4_4:39094755-39094774 | Msa0680200:intron | 20.0% |
| !!! | TGAAATTCTTCTTTTATCAA+TGG | + | chr4_4:39094941-39094960 | None:intergenic | 20.0% |
| !!! | TAAAAATCATCTAAGATGAT+TGG | - | chr4_4:39095486-39095505 | Msa0680200:CDS | 20.0% |
| !! | AAATTATAACCATTGTAGAA+GGG | + | chr4_4:39095722-39095741 | None:intergenic | 20.0% |
| !! | AAATTTATGATCACCTTAAA+TGG | + | chr4_4:39096095-39096114 | None:intergenic | 20.0% |
| !!! | TTTTGAAACAGATACAAATG+GGG | + | chr4_4:39093116-39093135 | None:intergenic | 25.0% |
| !!! | GTTTTGAAACAGATACAAAT+GGG | + | chr4_4:39093117-39093136 | None:intergenic | 25.0% |
| !!! | AGTTTTGAAACAGATACAAA+TGG | + | chr4_4:39093118-39093137 | None:intergenic | 25.0% |
| ! | TTGAAGAAATTATCTTGAAC+AGG | + | chr4_4:39093436-39093455 | None:intergenic | 25.0% |
| ! | TATACTGACATAAATACTTG+TGG | - | chr4_4:39093537-39093556 | Msa0680200:intron | 25.0% |
| ! | TTTCTGACTTTAGTCTATTT+AGG | - | chr4_4:39094096-39094115 | Msa0680200:intron | 25.0% |
| !! | TACTTCTCAATTTTCTAACT+TGG | + | chr4_4:39094199-39094218 | None:intergenic | 25.0% |
| ! | TCATATGATTGTTTCCTATA+AGG | - | chr4_4:39094341-39094360 | Msa0680200:intron | 25.0% |
| ! | ACGAAGAGAAGATAATTATA+GGG | - | chr4_4:39094966-39094985 | Msa0680200:intron | 25.0% |
| ! | AAGATAATTATAGGGTTAGA+TGG | - | chr4_4:39094974-39094993 | Msa0680200:intron | 25.0% |
| !!! | GCTTTATTTTGAAGTTAAGA+GGG | - | chr4_4:39095083-39095102 | Msa0680200:intron | 25.0% |
| ! | AAAATCAAAACCCTCTTATA+TGG | - | chr4_4:39095197-39095216 | Msa0680200:intron | 25.0% |
| ! | GAGAAGAAAAAAAATAGAGA+GGG | + | chr4_4:39095344-39095363 | None:intergenic | 25.0% |
| ! | ATCTGTAAAGTCAGAAATAT+AGG | + | chr4_4:39095556-39095575 | None:intergenic | 25.0% |
| ! | GTATAAAAAGGTAGTCAAAA+GGG | + | chr4_4:39095641-39095660 | None:intergenic | 25.0% |
| ! | CAAATTATAACCATTGTAGA+AGG | + | chr4_4:39095723-39095742 | None:intergenic | 25.0% |
| ! | GAAATCTGGATATAATCTAT+GGG | + | chr4_4:39095782-39095801 | None:intergenic | 25.0% |
| ! | TGAAATCTGGATATAATCTA+TGG | + | chr4_4:39095783-39095802 | None:intergenic | 25.0% |
| ! | AATTCAAATCGTAGAAAACA+AGG | - | chr4_4:39096115-39096134 | Msa0680200:intron | 25.0% |
| ! | TTACAAGTTGTAACTTCAAA+TGG | - | chr4_4:39096173-39096192 | Msa0680200:intron | 25.0% |
| !!! | TATTTTTTGCTTGCCATAAA+TGG | - | chr4_4:39096215-39096234 | Msa0680200:intron | 25.0% |
| ! | GTTCATTTAACATCCATTTA+TGG | + | chr4_4:39096231-39096250 | None:intergenic | 25.0% |
| ! | AAAAAAAAAGTTGGATGCTA+CGG | + | chr4_4:39096533-39096552 | None:intergenic | 25.0% |
| !!! | TAGCATCCAACTTTTTTTTT+GGG | - | chr4_4:39096533-39096552 | Msa0680200:CDS | 25.0% |
| !!! | TTTTTATAGTGAAAGCATGA+TGG | - | chr4_4:39096735-39096754 | Msa0680200:exon | 25.0% |
| AAATTCATCCATCTGATTCA+GGG | + | chr4_4:39093189-39093208 | None:intergenic | 30.0% | |
| AAAAGCTTAACAATAGAGAG+GGG | + | chr4_4:39093321-39093340 | None:intergenic | 30.0% | |
| GAAAAGCTTAACAATAGAGA+GGG | + | chr4_4:39093322-39093341 | None:intergenic | 30.0% | |
| AGAAAAGCTTAACAATAGAG+AGG | + | chr4_4:39093323-39093342 | None:intergenic | 30.0% | |
| !! | TGTTTTTATATCAGCTCCAA+CGG | - | chr4_4:39093372-39093391 | Msa0680200:intron | 30.0% |
| GAGATTCTTAAGAGAACATT+TGG | - | chr4_4:39093396-39093415 | Msa0680200:three_prime_UTR | 30.0% | |
| AATGCAGTGTTGTCAAATAT+TGG | - | chr4_4:39093778-39093797 | Msa0680200:intron | 30.0% | |
| ATGCAGTGTTGTCAAATATT+GGG | - | chr4_4:39093779-39093798 | Msa0680200:intron | 30.0% | |
| TATATGAAACAGATAAGAGC+TGG | - | chr4_4:39094634-39094653 | Msa0680200:intron | 30.0% | |
| ! | TCTTCTTTTATCAATGGTAC+AGG | + | chr4_4:39094935-39094954 | None:intergenic | 30.0% |
| GACGAAGAGAAGATAATTAT+AGG | - | chr4_4:39094965-39094984 | Msa0680200:intron | 30.0% | |
| ATTATAGGGTTAGATGGATA+AGG | - | chr4_4:39094980-39094999 | Msa0680200:intron | 30.0% | |
| TTATAGGGTTAGATGGATAA+GGG | - | chr4_4:39094981-39095000 | Msa0680200:intron | 30.0% | |
| TCTTAAATAGAGTGTGTGAT+AGG | + | chr4_4:39095009-39095028 | None:intergenic | 30.0% | |
| GCAGAATGTGCAAATTATTT+AGG | - | chr4_4:39095061-39095080 | Msa0680200:intron | 30.0% | |
| !!! | GGCTTTATTTTGAAGTTAAG+AGG | - | chr4_4:39095082-39095101 | Msa0680200:intron | 30.0% |
| !!! | ATTTTGAAGTTAAGAGGGAA+AGG | - | chr4_4:39095088-39095107 | Msa0680200:intron | 30.0% |
| GAGGGAAAAAAGAATGTTTA+TGG | + | chr4_4:39095326-39095345 | None:intergenic | 30.0% | |
| GGAGAAGAAAAAAAATAGAG+AGG | + | chr4_4:39095345-39095364 | None:intergenic | 30.0% | |
| !!! | TTTTTTTCTTCTCCCAAACA+AGG | - | chr4_4:39095351-39095370 | Msa0680200:intron | 30.0% |
| TGACTTATGATTCTTCAGAA+GGG | + | chr4_4:39095430-39095449 | None:intergenic | 30.0% | |
| ! | AAGATATTTTGTTCATGCCA+CGG | - | chr4_4:39095519-39095538 | Msa0680200:intron | 30.0% |
| CGTATAAAAAGGTAGTCAAA+AGG | + | chr4_4:39095642-39095661 | None:intergenic | 30.0% | |
| ! | TTGACTACCTTTTTATACGT+TGG | - | chr4_4:39095643-39095662 | Msa0680200:intron | 30.0% |
| TGATGTGAAACAATGAAATC+TGG | + | chr4_4:39095796-39095815 | None:intergenic | 30.0% | |
| ! | TAACTCAGTATTGAACTAGT+TGG | + | chr4_4:39095855-39095874 | None:intergenic | 30.0% |
| GTTAATTTATTCCACCTTGA+AGG | - | chr4_4:39095871-39095890 | Msa0680200:intron | 30.0% | |
| !! | TTTTAAGGAGCTCTATCAAA+AGG | + | chr4_4:39096010-39096029 | None:intergenic | 30.0% |
| ! | AACATACCACACAGTTTTTA+AGG | + | chr4_4:39096025-39096044 | None:intergenic | 30.0% |
| ATGGATGTTAAATGAACACT+TGG | - | chr4_4:39096234-39096253 | Msa0680200:intron | 30.0% | |
| TGGATGTTAAATGAACACTT+GGG | - | chr4_4:39096235-39096254 | Msa0680200:intron | 30.0% | |
| TGTAGTTATAGTTATTGCAC+TGG | - | chr4_4:39096349-39096368 | Msa0680200:intron | 30.0% | |
| !!! | GTAGCATCCAACTTTTTTTT+TGG | - | chr4_4:39096532-39096551 | Msa0680200:CDS | 30.0% |
| ACATGACCCAAAAAAAAAGT+TGG | + | chr4_4:39096542-39096561 | None:intergenic | 30.0% | |
| !!! | TTACAGTTTTGAAGCATTGA+TGG | - | chr4_4:39096777-39096796 | Msa0680200:five_prime_UTR | 30.0% |
| AAGTATAACCCTGAATCAGA+TGG | - | chr4_4:39093178-39093197 | Msa0680200:three_prime_UTR | 35.0% | |
| CAAATTCATCCATCTGATTC+AGG | + | chr4_4:39093190-39093209 | None:intergenic | 35.0% | |
| ! | ATGTGAAAGCATGATTCAGA+AGG | - | chr4_4:39093259-39093278 | Msa0680200:intron | 35.0% |
| ! | TGTGAAAGCATGATTCAGAA+GGG | - | chr4_4:39093260-39093279 | Msa0680200:intron | 35.0% |
| AATTGCGATCAAAATCATGC+TGG | - | chr4_4:39093463-39093482 | Msa0680200:three_prime_UTR | 35.0% | |
| GACATAAATACTTGTGGATG+TGG | - | chr4_4:39093543-39093562 | Msa0680200:intron | 35.0% | |
| !!! | AGATATTGGTGGCTGTTTTT+GGG | - | chr4_4:39093808-39093827 | Msa0680200:intron | 35.0% |
| ACCACCATAATCTGATATGA+TGG | - | chr4_4:39093928-39093947 | Msa0680200:CDS | 35.0% | |
| TACGCCATCATATCAGATTA+TGG | + | chr4_4:39093935-39093954 | None:intergenic | 35.0% | |
| AGACTAAAGTCAGAAATCCT+TGG | + | chr4_4:39094092-39094111 | None:intergenic | 35.0% | |
| ! | AAGTAGACAATCACTCCTTT+TGG | - | chr4_4:39094214-39094233 | Msa0680200:intron | 35.0% |
| CTAATAAGTACACCATCGTA+AGG | + | chr4_4:39094258-39094277 | None:intergenic | 35.0% | |
| !! | GTTGTTGTTGTCTTGTTTAG+TGG | - | chr4_4:39094295-39094314 | Msa0680200:intron | 35.0% |
| GTGGTGATTGTCATTACAAA+CGG | - | chr4_4:39094665-39094684 | Msa0680200:intron | 35.0% | |
| TGGTGATTGTCATTACAAAC+GGG | - | chr4_4:39094666-39094685 | Msa0680200:intron | 35.0% | |
| GAGGACATTTGAAAATACGA+GGG | - | chr4_4:39094698-39094717 | Msa0680200:intron | 35.0% | |
| ACAGGAGTAAAAAAGTTGCT+TGG | + | chr4_4:39094917-39094936 | None:intergenic | 35.0% | |
| AAGGAAGGAAAAAATGGAAG+TGG | - | chr4_4:39095131-39095150 | Msa0680200:intron | 35.0% | |
| AAAAAACCCCGTGTAAAGTT+GGG | + | chr4_4:39095171-39095190 | None:intergenic | 35.0% | |
| ATCAAAACCCTCTTATATGG+AGG | - | chr4_4:39095200-39095219 | Msa0680200:intron | 35.0% | |
| TTGAGTTCCTCCATATAAGA+GGG | + | chr4_4:39095210-39095229 | None:intergenic | 35.0% | |
| ACTTATGATTCTTCAGAAGG+GGG | + | chr4_4:39095428-39095447 | None:intergenic | 35.0% | |
| GACTTATGATTCTTCAGAAG+GGG | + | chr4_4:39095429-39095448 | None:intergenic | 35.0% | |
| CTGACTTATGATTCTTCAGA+AGG | + | chr4_4:39095431-39095450 | None:intergenic | 35.0% | |
| ! | ACCTTTTTATACGTTGGACT+TGG | - | chr4_4:39095649-39095668 | Msa0680200:intron | 35.0% |
| ! | CCTTTTTATACGTTGGACTT+GGG | - | chr4_4:39095650-39095669 | Msa0680200:intron | 35.0% |
| GTCTATCATTCTCAATGAAG+TGG | - | chr4_4:39095752-39095771 | Msa0680200:intron | 35.0% | |
| !! | AAGGAGGGTTTTAACATCAT+TGG | - | chr4_4:39095904-39095923 | Msa0680200:intron | 35.0% |
| AAAACTGTGTGGTATGTTAC+TGG | - | chr4_4:39096027-39096046 | Msa0680200:intron | 35.0% | |
| CAACCATTGTTTCCATTCTT+TGG | - | chr4_4:39096062-39096081 | Msa0680200:intron | 35.0% | |
| AAGCCAAAGAATGGAAACAA+TGG | + | chr4_4:39096068-39096087 | None:intergenic | 35.0% | |
| AATGGTATCAAGCCAAAGAA+TGG | + | chr4_4:39096077-39096096 | None:intergenic | 35.0% | |
| !! | CTTTGGCTTGATACCATTTA+AGG | - | chr4_4:39096079-39096098 | Msa0680200:intron | 35.0% |
| ! | ATGAACACTTGGGTTGTTTA+CGG | - | chr4_4:39096245-39096264 | Msa0680200:intron | 35.0% |
| ATACAATACTCCAGCAACAA+CGG | + | chr4_4:39096285-39096304 | None:intergenic | 35.0% | |
| ! | GAGTATTGTATAACAGCCAT+TGG | - | chr4_4:39096294-39096313 | Msa0680200:intron | 35.0% |
| CTATAACTACACCAACACAA+TGG | + | chr4_4:39096340-39096359 | None:intergenic | 35.0% | |
| !! | AAGCATTGATGGAACTTGAT+TGG | - | chr4_4:39096788-39096807 | Msa0680200:five_prime_UTR | 35.0% |
| !! | TTTCTTCTCAGATTTGGTGG+AGG | + | chr4_4:39093228-39093247 | None:intergenic | 40.0% |
| AGCTTTCTTCTCAGATTTGG+TGG | + | chr4_4:39093231-39093250 | None:intergenic | 40.0% | |
| GAGAGCTTTCTTCTCAGATT+TGG | + | chr4_4:39093234-39093253 | None:intergenic | 40.0% | |
| AGAGAACATTTGGAGAAAGC+TGG | - | chr4_4:39093406-39093425 | Msa0680200:three_prime_UTR | 40.0% | |
| GAGAACATTTGGAGAAAGCT+GGG | - | chr4_4:39093407-39093426 | Msa0680200:three_prime_UTR | 40.0% | |
| AGAGGTTATCGTTACAAACG+AGG | - | chr4_4:39093738-39093757 | Msa0680200:intron | 40.0% | |
| GTTATCGTTACAAACGAGGA+GGG | - | chr4_4:39093742-39093761 | Msa0680200:intron | 40.0% | |
| GTGTTGTCAAATATTGGGCA+TGG | - | chr4_4:39093784-39093803 | Msa0680200:intron | 40.0% | |
| ATATTGGGCATGGCAGATAT+TGG | - | chr4_4:39093794-39093813 | Msa0680200:intron | 40.0% | |
| !! | CAGATATTGGTGGCTGTTTT+TGG | - | chr4_4:39093807-39093826 | Msa0680200:intron | 40.0% |
| GCCATCATATCAGATTATGG+TGG | + | chr4_4:39093932-39093951 | None:intergenic | 40.0% | |
| TATCAGATTATGGTGGTCCA+TGG | + | chr4_4:39093925-39093944 | None:intergenic | 40.0% | |
| ACCACCATAATCTGATACGA+TGG | - | chr4_4:39093991-39094010 | Msa0680200:CDS | 40.0% | |
| TCAGATAGAAATGCAAGACC+AGG | - | chr4_4:39094425-39094444 | Msa0680200:intron | 40.0% | |
| AACAAACCTCACTACAAGCA+TGG | + | chr4_4:39094533-39094552 | None:intergenic | 40.0% | |
| ATAAGAGCTGGTCATCTAAG+TGG | - | chr4_4:39094646-39094665 | Msa0680200:intron | 40.0% | |
| CGAGGACATTTGAAAATACG+AGG | - | chr4_4:39094697-39094716 | Msa0680200:intron | 40.0% | |
| TTAAGAGGGAAAGGAATGAG+AGG | - | chr4_4:39095097-39095116 | Msa0680200:intron | 40.0% | |
| GGAAAGGAATGAGAGGATTT+GGG | - | chr4_4:39095104-39095123 | Msa0680200:intron | 40.0% | |
| GAAAGGAATGAGAGGATTTG+GGG | - | chr4_4:39095105-39095124 | Msa0680200:intron | 40.0% | |
| AAAGGAATGAGAGGATTTGG+GGG | - | chr4_4:39095106-39095125 | Msa0680200:intron | 40.0% | |
| TGATAGTCCCCAACTTTACA+CGG | - | chr4_4:39095160-39095179 | Msa0680200:intron | 40.0% | |
| AAAAACCCCGTGTAAAGTTG+GGG | + | chr4_4:39095170-39095189 | None:intergenic | 40.0% | |
| GAAAAAACCCCGTGTAAAGT+TGG | + | chr4_4:39095172-39095191 | None:intergenic | 40.0% | |
| CTTGAGTTCCTCCATATAAG+AGG | + | chr4_4:39095211-39095230 | None:intergenic | 40.0% | |
| !! | ACTCAAGAAGAGTATTCGAG+AGG | - | chr4_4:39095224-39095243 | Msa0680200:CDS | 40.0% |
| !!! | ATTCGAGAGGTGGTTTTAGA+CGG | - | chr4_4:39095237-39095256 | Msa0680200:CDS | 40.0% |
| CTTATGATTCTTCAGAAGGG+GGG | + | chr4_4:39095427-39095446 | None:intergenic | 40.0% | |
| ! | AAGGCATGTGTGAGTTGTTT+TGG | - | chr4_4:39095462-39095481 | Msa0680200:CDS | 40.0% |
| CCCAAGTCCAACGTATAAAA+AGG | + | chr4_4:39095653-39095672 | None:intergenic | 40.0% | |
| AACCATTGTAGAAGGGCAAA+AGG | + | chr4_4:39095715-39095734 | None:intergenic | 40.0% | |
| TTTGATGCATTCCTTCAAGG+TGG | + | chr4_4:39095885-39095904 | None:intergenic | 40.0% | |
| ! | CCTTTTGATGCATTCCTTCA+AGG | + | chr4_4:39095888-39095907 | None:intergenic | 40.0% |
| CCTTGAAGGAATGCATCAAA+AGG | - | chr4_4:39095885-39095904 | Msa0680200:intron | 40.0% | |
| TGAAGGAATGCATCAAAAGG+AGG | - | chr4_4:39095888-39095907 | Msa0680200:intron | 40.0% | |
| GAAGGAATGCATCAAAAGGA+GGG | - | chr4_4:39095889-39095908 | Msa0680200:intron | 40.0% | |
| GCAGATGAACCAGAACAAAA+CGG | + | chr4_4:39095938-39095957 | None:intergenic | 40.0% | |
| TTCATCTGCGAAGAATGCTA+TGG | - | chr4_4:39095949-39095968 | Msa0680200:intron | 40.0% | |
| AGAATGCTATGGAAGCTGTA+TGG | - | chr4_4:39095960-39095979 | Msa0680200:intron | 40.0% | |
| GAATGCTATGGAAGCTGTAT+GGG | - | chr4_4:39095961-39095980 | Msa0680200:intron | 40.0% | |
| AGAGCTCCTTAAAAACTGTG+TGG | - | chr4_4:39096016-39096035 | Msa0680200:intron | 40.0% | |
| TTGTCATATCTCTCACTGTG+TGG | + | chr4_4:39096501-39096520 | None:intergenic | 40.0% | |
| ACACAGTGAGAGATATGACA+AGG | - | chr4_4:39096500-39096519 | Msa0680200:CDS | 40.0% | |
| AAAAAGTTGGATGCTACGGT+GGG | + | chr4_4:39096529-39096548 | None:intergenic | 40.0% | |
| AAAAAAGTTGGATGCTACGG+TGG | + | chr4_4:39096530-39096549 | None:intergenic | 40.0% | |
| !! | TCATGTTAACTTGTGCCCTT+AGG | - | chr4_4:39096556-39096575 | Msa0680200:intron | 40.0% |
| !! | CATGTTAACTTGTGCCCTTA+GGG | - | chr4_4:39096557-39096576 | Msa0680200:intron | 40.0% |
| TTCCTTAACATGTGCCCTAA+GGG | + | chr4_4:39096574-39096593 | None:intergenic | 40.0% | |
| !! | ATGTTAACTTGTGCCCTCAA+GGG | + | chr4_4:39096704-39096723 | None:intergenic | 40.0% |
| !! | AATGTTAACTTGTGCCCTCA+AGG | + | chr4_4:39096705-39096724 | None:intergenic | 40.0% |
| GCTACAGATGTGTAAGGGTT+CGG | + | chr4_4:39093153-39093172 | None:intergenic | 45.0% | |
| CAGCAGCTACAGATGTGTAA+GGG | + | chr4_4:39093158-39093177 | None:intergenic | 45.0% | |
| TCAGCAGCTACAGATGTGTA+AGG | + | chr4_4:39093159-39093178 | None:intergenic | 45.0% | |
| TCTCTTAAGAATCTCGCCGT+TGG | + | chr4_4:39093391-39093410 | None:intergenic | 45.0% | |
| TGCGATCAAAATCATGCTGG+CGG | - | chr4_4:39093466-39093485 | Msa0680200:three_prime_UTR | 45.0% | |
| GGTTATCGTTACAAACGAGG+AGG | - | chr4_4:39093741-39093760 | Msa0680200:intron | 45.0% | |
| GGTGGAAAATGTGGCCATAT+CGG | + | chr4_4:39093845-39093864 | None:intergenic | 45.0% | |
| ! | TCGGACTATGGTGGAAAATG+TGG | + | chr4_4:39093854-39093873 | None:intergenic | 45.0% |
| ACTGTCATATCGGACTATGG+TGG | + | chr4_4:39093863-39093882 | None:intergenic | 45.0% | |
| ACCTTGTGGCACTGTCATAT+CGG | + | chr4_4:39093873-39093892 | None:intergenic | 45.0% | |
| !!! | GGGGTTTTGATTCTCCACAA+TGG | - | chr4_4:39093905-39093924 | Msa0680200:exon | 45.0% |
| CAGATTATGGTGGTCCATTG+TGG | + | chr4_4:39093922-39093941 | None:intergenic | 45.0% | |
| ! | ATGATGGCGTACAGCCAATA+TGG | - | chr4_4:39093944-39093963 | Msa0680200:CDS | 45.0% |
| GCCATCGTATCAGATTATGG+TGG | + | chr4_4:39093995-39094014 | None:intergenic | 45.0% | |
| !! | CAGTCAATATGGCGGGATTT+TGG | - | chr4_4:39094021-39094040 | Msa0680200:CDS | 45.0% |
| !! | GACAATCACTCCTTTTGGAG+AGG | - | chr4_4:39094219-39094238 | Msa0680200:intron | 45.0% |
| !! | AATCACTCCTTTTGGAGAGG+AGG | - | chr4_4:39094222-39094241 | Msa0680200:intron | 45.0% |
| !! | ATCACTCCTTTTGGAGAGGA+GGG | - | chr4_4:39094223-39094242 | Msa0680200:intron | 45.0% |
| ! | AAATGCAAGACCAGGTTGAC+CGG | - | chr4_4:39094433-39094452 | Msa0680200:intron | 45.0% |
| TCCAATCCAAGTTTGCAGCT+CGG | + | chr4_4:39094497-39094516 | None:intergenic | 45.0% | |
| TACAAACGGGAACTTCTACG+AGG | - | chr4_4:39094679-39094698 | Msa0680200:intron | 45.0% | |
| !! | AGTCGAGTTAGCTTGCAACA+AGG | - | chr4_4:39094825-39094844 | Msa0680200:intron | 45.0% |
| CTGCATCAGCATAAGCTTCT+AGG | + | chr4_4:39095045-39095064 | None:intergenic | 45.0% | |
| GGGAAAGGAATGAGAGGATT+TGG | - | chr4_4:39095103-39095122 | Msa0680200:intron | 45.0% | |
| AAGGAATGAGAGGATTTGGG+GGG | - | chr4_4:39095107-39095126 | Msa0680200:intron | 45.0% | |
| GGGGGAAAGGAAGGAAAAAA+TGG | - | chr4_4:39095125-39095144 | Msa0680200:intron | 45.0% | |
| GATAGTCCCCAACTTTACAC+GGG | - | chr4_4:39095161-39095180 | Msa0680200:intron | 45.0% | |
| ATAGTCCCCAACTTTACACG+GGG | - | chr4_4:39095162-39095181 | Msa0680200:intron | 45.0% | |
| !! | CAAGAAGAGTATTCGAGAGG+TGG | - | chr4_4:39095227-39095246 | Msa0680200:CDS | 45.0% |
| !!! | GAGGTGGTTTTAGACGGATT+TGG | - | chr4_4:39095243-39095262 | Msa0680200:CDS | 45.0% |
| ! | GGGAGTTTCTCACCTTGTTT+GGG | + | chr4_4:39095366-39095385 | None:intergenic | 45.0% |
| TAAGTCAGACCCAATGCTCA+AGG | - | chr4_4:39095443-39095462 | Msa0680200:CDS | 45.0% | |
| TCACACATGCCTTGAGCATT+GGG | + | chr4_4:39095455-39095474 | None:intergenic | 45.0% | |
| TTGTTCATGCCACGGATTCT+TGG | - | chr4_4:39095527-39095546 | Msa0680200:intron | 45.0% | |
| TATAGGACACCAAGAATCCG+TGG | + | chr4_4:39095539-39095558 | None:intergenic | 45.0% | |
| GCGACGATAATGTCTAGACA+GGG | - | chr4_4:39095672-39095691 | Msa0680200:intron | 45.0% | |
| ! | CTCCTTTTGCCCTTCTACAA+TGG | - | chr4_4:39095710-39095729 | Msa0680200:intron | 45.0% |
| !! | GCTGCAAATCCGTTTTGTTC+TGG | - | chr4_4:39095926-39095945 | Msa0680200:intron | 45.0% |
| ! | CAGCAACAACGGAGCAATTT+TGG | + | chr4_4:39096274-39096293 | None:intergenic | 45.0% |
| CAAAATTGCTCCGTTGTTGC+TGG | - | chr4_4:39096272-39096291 | Msa0680200:intron | 45.0% | |
| TAGCCAAACAACGGAACCAA+TGG | + | chr4_4:39096313-39096332 | None:intergenic | 45.0% | |
| AATGGCTGCTAGCCAAACAA+CGG | + | chr4_4:39096322-39096341 | None:intergenic | 45.0% | |
| GTTCCTTAACATGTGCCCTA+AGG | + | chr4_4:39096575-39096594 | None:intergenic | 45.0% | |
| TTCCTTAACATGTGCCCTTG+AGG | - | chr4_4:39096687-39096706 | Msa0680200:CDS | 45.0% | |
| TCCTTAACATGTGCCCTTGA+GGG | - | chr4_4:39096688-39096707 | Msa0680200:CDS | 45.0% | |
| !! | CTTCTCAGATTTGGTGGAGG+AGG | + | chr4_4:39093225-39093244 | None:intergenic | 50.0% |
| ATCCAAACGTACCCCTTCAC+CGG | + | chr4_4:39093500-39093519 | None:intergenic | 50.0% | |
| TTGGGCATGGCAGATATTGG+TGG | - | chr4_4:39093797-39093816 | Msa0680200:intron | 50.0% | |
| GGGCTCAATTTCAGCCGATA+TGG | - | chr4_4:39093828-39093847 | Msa0680200:three_prime_UTR | 50.0% | |
| GGCACTGTCATATCGGACTA+TGG | + | chr4_4:39093866-39093885 | None:intergenic | 50.0% | |
| TCCGATATGACAGTGCCACA+AGG | - | chr4_4:39093869-39093888 | Msa0680200:three_prime_UTR | 50.0% | |
| GATATGACAGTGCCACAAGG+TGG | - | chr4_4:39093872-39093891 | Msa0680200:three_prime_UTR | 50.0% | |
| ATGGCGTACAGCCAATATGG+CGG | - | chr4_4:39093947-39093966 | Msa0680200:CDS | 50.0% | |
| !! | CAGCCAATATGGCGGGATTT+TGG | - | chr4_4:39093955-39093974 | Msa0680200:CDS | 50.0% |
| GAGCCAAAATCCCGCCATAT+TGG | + | chr4_4:39093961-39093980 | None:intergenic | 50.0% | |
| GGCGCCATCGTATCAGATTA+TGG | + | chr4_4:39093998-39094017 | None:intergenic | 50.0% | |
| ATGGCGCCACACAGTCAATA+TGG | - | chr4_4:39094010-39094029 | Msa0680200:CDS | 50.0% | |
| ! | ATCCCGCCATATTGACTGTG+TGG | + | chr4_4:39094019-39094038 | None:intergenic | 50.0% |
| AACACACCCTCCTCTCCAAA+AGG | + | chr4_4:39094232-39094251 | None:intergenic | 50.0% | |
| ! | GGGTGTGTTGTTCCTTACGA+TGG | - | chr4_4:39094243-39094262 | Msa0680200:intron | 50.0% |
| ! | AATGCAAGACCAGGTTGACC+GGG | - | chr4_4:39094434-39094453 | Msa0680200:intron | 50.0% |
| TTAGCTCGTGCACTATCACC+CGG | + | chr4_4:39094455-39094474 | None:intergenic | 50.0% | |
| TGCTCACCATGCTTGTAGTG+AGG | - | chr4_4:39094524-39094543 | Msa0680200:intron | 50.0% | |
| ATGAGAGGATTTGGGGGGAA+AGG | - | chr4_4:39095112-39095131 | Msa0680200:intron | 50.0% | |
| GGGGAGTTTCTCACCTTGTT+TGG | + | chr4_4:39095367-39095386 | None:intergenic | 50.0% | |
| GTAGGGGAGGAAAAGGGAAA+GGG | + | chr4_4:39095391-39095410 | None:intergenic | 50.0% | |
| TTGAGGGTAGGGGAGGAAAA+GGG | + | chr4_4:39095397-39095416 | None:intergenic | 50.0% | |
| TTTGAGGGTAGGGGAGGAAA+AGG | + | chr4_4:39095398-39095417 | None:intergenic | 50.0% | |
| !!! | AATGGTTTTGAGGGTAGGGG+AGG | + | chr4_4:39095404-39095423 | None:intergenic | 50.0% |
| !!! | GGGAATGGTTTTGAGGGTAG+GGG | + | chr4_4:39095407-39095426 | None:intergenic | 50.0% |
| !!! | GGGGAATGGTTTTGAGGGTA+GGG | + | chr4_4:39095408-39095427 | None:intergenic | 50.0% |
| !!! | GAAGGGGGGAATGGTTTTGA+GGG | + | chr4_4:39095413-39095432 | None:intergenic | 50.0% |
| !! | AGAAGGGGGGAATGGTTTTG+AGG | + | chr4_4:39095414-39095433 | None:intergenic | 50.0% |
| GATTCTTCAGAAGGGGGGAA+TGG | + | chr4_4:39095422-39095441 | None:intergenic | 50.0% | |
| CTCACACATGCCTTGAGCAT+TGG | + | chr4_4:39095456-39095475 | None:intergenic | 50.0% | |
| GGCGACGATAATGTCTAGAC+AGG | - | chr4_4:39095671-39095690 | Msa0680200:intron | 50.0% | |
| !! | CAGCCATTGGTTCCGTTGTT+TGG | - | chr4_4:39096307-39096326 | Msa0680200:intron | 50.0% |
| TTGGCTAGCAGCCATTGTGT+TGG | - | chr4_4:39096326-39096345 | Msa0680200:intron | 50.0% | |
| TGCCCTTAGGGCACATGTTA+AGG | - | chr4_4:39096569-39096588 | Msa0680200:intron | 50.0% | |
| CATGCTGGCGGTTATGTTCC+CGG | - | chr4_4:39093478-39093497 | Msa0680200:three_prime_UTR | 55.0% | |
| GCGGTTATGTTCCCGGTGAA+GGG | - | chr4_4:39093485-39093504 | Msa0680200:intron | 55.0% | |
| CGGTTATGTTCCCGGTGAAG+GGG | - | chr4_4:39093486-39093505 | Msa0680200:intron | 55.0% | |
| TCCAAACGTACCCCTTCACC+GGG | + | chr4_4:39093499-39093518 | None:intergenic | 55.0% | |
| TGACAGTGCCACAAGGTGGT+TGG | - | chr4_4:39093876-39093895 | Msa0680200:three_prime_UTR | 55.0% | |
| ! | GTGCCACAAGGTGGTTGGTA+TGG | - | chr4_4:39093881-39093900 | Msa0680200:three_prime_UTR | 55.0% |
| ! | CCACAAGGTGGTTGGTATGG+CGG | - | chr4_4:39093884-39093903 | Msa0680200:three_prime_UTR | 55.0% |
| ! | CACAAGGTGGTTGGTATGGC+GGG | - | chr4_4:39093885-39093904 | Msa0680200:three_prime_UTR | 55.0% |
| ! | ACAAGGTGGTTGGTATGGCG+GGG | - | chr4_4:39093886-39093905 | Msa0680200:three_prime_UTR | 55.0% |
| TGGCGTACAGCCAATATGGC+GGG | - | chr4_4:39093948-39093967 | Msa0680200:CDS | 55.0% | |
| !!! | GGGATTTTGGCTCTCTGCCA+TGG | - | chr4_4:39093968-39093987 | Msa0680200:CDS | 55.0% |
| GCGCCACACAGTCAATATGG+CGG | - | chr4_4:39094013-39094032 | Msa0680200:CDS | 55.0% | |
| CGCCACACAGTCAATATGGC+GGG | - | chr4_4:39094014-39094033 | Msa0680200:CDS | 55.0% | |
| GGTTAGACCAGTGTCGTCGA+TGG | + | chr4_4:39094071-39094090 | None:intergenic | 55.0% | |
| ! | CGACGACACTGGTCTAACCA+AGG | - | chr4_4:39094072-39094091 | Msa0680200:intron | 55.0% |
| TGACTGCCGAGCTGCAAACT+TGG | - | chr4_4:39094488-39094507 | Msa0680200:intron | 55.0% | |
| GCCGAGCTGCAAACTTGGAT+TGG | - | chr4_4:39094493-39094512 | Msa0680200:intron | 55.0% | |
| GAGGATTTGGGGGGAAAGGA+AGG | - | chr4_4:39095116-39095135 | Msa0680200:intron | 55.0% | |
| GGAGGAAAAGGGAAAGGGAG+GGG | + | chr4_4:39095386-39095405 | None:intergenic | 55.0% | |
| GGGAGGAAAAGGGAAAGGGA+GGG | + | chr4_4:39095387-39095406 | None:intergenic | 55.0% | |
| GGTAGGGGAGGAAAAGGGAA+AGG | + | chr4_4:39095392-39095411 | None:intergenic | 55.0% | |
| !!! | GGGGGAATGGTTTTGAGGGT+AGG | + | chr4_4:39095409-39095428 | None:intergenic | 55.0% |
| ! | GCCCTCAAGGGCACATGTTA+AGG | + | chr4_4:39096692-39096711 | None:intergenic | 55.0% |
| GGCGGTTATGTTCCCGGTGA+AGG | - | chr4_4:39093484-39093503 | Msa0680200:intron | 60.0% | |
| ! | TCCCGGTGAAGGGGTACGTT+TGG | - | chr4_4:39093495-39093514 | Msa0680200:intron | 60.0% |
| CCGCCATACCAACCACCTTG+TGG | + | chr4_4:39093887-39093906 | None:intergenic | 60.0% | |
| !!! | GGGATTTTGGCTCTCCGCCA+TGG | - | chr4_4:39094034-39094053 | Msa0680200:CDS | 60.0% |
| ! | TGGCAGATGGTGGTCCATGG+CGG | + | chr4_4:39094051-39094070 | None:intergenic | 60.0% |
| ! | CGATGGCAGATGGTGGTCCA+TGG | + | chr4_4:39094054-39094073 | None:intergenic | 60.0% |
| GTGTCGTCGATGGCAGATGG+TGG | + | chr4_4:39094061-39094080 | None:intergenic | 60.0% | |
| CCAGTGTCGTCGATGGCAGA+TGG | + | chr4_4:39094064-39094083 | None:intergenic | 60.0% | |
| CCATCTGCCATCGACGACAC+TGG | - | chr4_4:39094061-39094080 | Msa0680200:intron | 60.0% | |
| GCACTATCACCCGGTCAACC+TGG | + | chr4_4:39094446-39094465 | None:intergenic | 60.0% | |
| GGGGAGGAAAAGGGAAAGGG+AGG | + | chr4_4:39095388-39095407 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 39093111 | 39096838 | 39093111 | ID=Msa0680200;Name=Msa0680200 |
| chr4_4 | mRNA | 39093111 | 39096838 | 39093111 | ID=Msa0680200-mRNA-1;Parent=Msa0680200;Name=Msa0680200-mRNA-1;_AED=0.35;_eAED=0.35;_QI=86|0.83|0.85|1|0.66|0.57|7|299|183 |
| chr4_4 | exon | 39093111 | 39093205 | 39093111 | ID=Msa0680200-mRNA-1:exon:9223;Parent=Msa0680200-mRNA-1 |
| chr4_4 | exon | 39093395 | 39093497 | 39093395 | ID=Msa0680200-mRNA-1:exon:9222;Parent=Msa0680200-mRNA-1 |
| chr4_4 | exon | 39093821 | 39094056 | 39093821 | ID=Msa0680200-mRNA-1:exon:9221;Parent=Msa0680200-mRNA-1 |
| chr4_4 | exon | 39095220 | 39095303 | 39095220 | ID=Msa0680200-mRNA-1:exon:9220;Parent=Msa0680200-mRNA-1 |
| chr4_4 | exon | 39095404 | 39095520 | 39095404 | ID=Msa0680200-mRNA-1:exon:9219;Parent=Msa0680200-mRNA-1 |
| chr4_4 | exon | 39096442 | 39096563 | 39096442 | ID=Msa0680200-mRNA-1:exon:9218;Parent=Msa0680200-mRNA-1 |
| chr4_4 | exon | 39096659 | 39096838 | 39096659 | ID=Msa0680200-mRNA-1:exon:9217;Parent=Msa0680200-mRNA-1 |
| chr4_4 | five_prime_UTR | 39096753 | 39096838 | 39096753 | ID=Msa0680200-mRNA-1:five_prime_utr;Parent=Msa0680200-mRNA-1 |
| chr4_4 | CDS | 39096659 | 39096752 | 39096659 | ID=Msa0680200-mRNA-1:cds;Parent=Msa0680200-mRNA-1 |
| chr4_4 | CDS | 39096442 | 39096563 | 39096442 | ID=Msa0680200-mRNA-1:cds;Parent=Msa0680200-mRNA-1 |
| chr4_4 | CDS | 39095404 | 39095520 | 39095404 | ID=Msa0680200-mRNA-1:cds;Parent=Msa0680200-mRNA-1 |
| chr4_4 | CDS | 39095220 | 39095303 | 39095220 | ID=Msa0680200-mRNA-1:cds;Parent=Msa0680200-mRNA-1 |
| chr4_4 | CDS | 39093922 | 39094056 | 39093922 | ID=Msa0680200-mRNA-1:cds;Parent=Msa0680200-mRNA-1 |
| chr4_4 | three_prime_UTR | 39093821 | 39093921 | 39093821 | ID=Msa0680200-mRNA-1:three_prime_utr;Parent=Msa0680200-mRNA-1 |
| chr4_4 | three_prime_UTR | 39093395 | 39093497 | 39093395 | ID=Msa0680200-mRNA-1:three_prime_utr;Parent=Msa0680200-mRNA-1 |
| chr4_4 | three_prime_UTR | 39093111 | 39093205 | 39093111 | ID=Msa0680200-mRNA-1:three_prime_utr;Parent=Msa0680200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
