AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1163730


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1163730 MtrunA17_Chr7g0261061 91.128 665 19 1 1 625 1 665 0.0 1241
Msa1163730 MtrunA17_Chr1g0184231 57.269 681 217 10 1 623 1 665 0.0 729
Msa1163730 MtrunA17_Chr4g0025571 56.771 192 79 2 426 617 707 894 1.55e-60 217
Msa1163730 MtrunA17_Chr4g0025571 35.220 159 89 4 5 151 5 161 3.02e-17 85.9
Msa1163730 MtrunA17_Chr2g0322001 55.729 192 81 2 426 617 668 855 2.46e-59 213
Msa1163730 MtrunA17_Chr2g0322001 30.675 163 95 5 5 151 5 165 2.10e-14 77.0
Msa1163730 MtrunA17_Chr1g0188861 45.856 181 89 3 442 617 573 749 7.54e-43 164
Msa1163730 MtrunA17_Chr1g0188861 31.788 151 65 4 1 149 5 119 1.05e-13 74.7
Msa1163730 MtrunA17_Chr7g0239641 37.282 287 153 9 342 608 387 666 2.52e-39 153
Msa1163730 MtrunA17_Chr7g0239641 35.443 158 85 4 5 150 6 158 1.18e-21 99.8
Msa1163730 MtrunA17_Chr1g0152981 29.651 172 93 8 5 152 12 179 6.07e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1163730 AT2G31280.2 36.209 707 283 20 7 596 33 688 9.75e-107 338
Msa1163730 AT1G06150.2 49.100 389 174 6 255 621 348 734 4.01e-94 305
Msa1163730 AT1G06150.2 51.316 152 63 2 1 152 1 141 9.67e-41 159
Msa1163730 AT1G06150.1 49.357 389 171 7 255 621 348 732 7.77e-93 302
Msa1163730 AT1G06150.1 51.316 152 63 2 1 152 1 141 9.47e-41 159
Msa1163730 AT2G31280.1 49.706 340 147 6 294 620 388 716 3.30e-84 279
Msa1163730 AT2G31280.1 53.061 147 49 4 7 152 7 134 5.01e-39 153
Msa1163730 AT2G31280.3 47.339 357 147 7 294 620 388 733 4.28e-80 268
Msa1163730 AT2G31280.3 52.703 148 50 4 6 152 6 134 5.20e-39 153
Msa1163730 AT2G27230.2 40.484 289 143 6 341 617 349 620 5.81e-53 192
Msa1163730 AT2G27230.2 36.735 147 82 5 5 149 5 142 2.42e-16 83.2
Msa1163730 AT2G27230.1 40.484 289 143 6 341 617 349 620 5.81e-53 192
Msa1163730 AT2G27230.1 36.735 147 82 5 5 149 5 142 2.42e-16 83.2
Msa1163730 AT1G64625.3 47.802 182 80 2 436 617 327 493 5.26e-45 167
Msa1163730 AT1G64625.2 47.802 182 80 2 436 617 341 507 6.46e-45 167
Msa1163730 AT1G64625.1 47.802 182 80 2 436 617 351 517 6.96e-45 167
Msa1163730 AT1G64625.4 64.286 70 25 0 436 505 341 410 3.80e-24 105
Msa1163730 AT3G15240.2 30.128 156 96 5 5 149 34 187 1.64e-13 72.8
Msa1163730 AT5G53900.2 30.120 166 85 7 5 149 21 176 1.31e-11 67.0

Find 188 sgRNAs with CRISPR-Local

Find 461 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACACAACTCATTCTGCTTAT+TGG 0.152338 7_4:-55088524 Msa1163730:CDS
ATGACATATCAAAGTGTTTA+AGG 0.178131 7_4:+55092184 None:intergenic
TTGCATTCAATTTATTATTA+TGG 0.194889 7_4:-55092108 Msa1163730:five_prime_UTR
TTGACGCCCCTTCAATGTTC+TGG 0.198121 7_4:-55088555 Msa1163730:CDS
ACAGAGGAAGTTAGCTAGTT+AGG 0.220301 7_4:-55091851 Msa1163730:five_prime_UTR
TGACTTATGAGTATACTTTA+TGG 0.222832 7_4:+55092888 None:intergenic
CTTCTGCTATTTCAAGAAAA+TGG 0.233515 7_4:+55086534 None:intergenic
CACAACTCATTCTGCTTATT+GGG 0.245900 7_4:-55088523 Msa1163730:CDS
ATCCTCCATGAAGTTCCTTT+TGG 0.266459 7_4:-55092785 Msa1163730:five_prime_UTR
CCACACTCCCTCGCATTTAC+AGG 0.273451 7_4:+55088378 None:intergenic
AATAATCAAGTTACAAGTTC+TGG 0.277737 7_4:-55090678 Msa1163730:CDS
AGACATTGACTGAAGCAAAA+TGG 0.289702 7_4:+55088443 None:intergenic
ATCTCATCCAGAGCATCTTT+TGG 0.297480 7_4:-55088064 Msa1163730:CDS
AGTGGAATTATGCAATCTTT+TGG 0.303004 7_4:-55091638 Msa1163730:CDS
TCATTCTGCTTATTGGGAAA+TGG 0.305416 7_4:-55088517 Msa1163730:CDS
GTTGGGCAGGTAGCTGTTAC+TGG 0.308114 7_4:-55090726 Msa1163730:CDS
GAACGAAATTACAAAATAAA+AGG 0.314287 7_4:-55092584 Msa1163730:five_prime_UTR
TCATATAATGCATATCCATT+AGG 0.320068 7_4:-55090839 Msa1163730:CDS
CCCACCCTCAATCTGTTCTA+AGG 0.320262 7_4:+55090904 None:intergenic
AATGTGGAGCATCAGGAATT+TGG 0.324771 7_4:-55088411 Msa1163730:CDS
TTCTGTTTAATTTACCGATT+AGG 0.330925 7_4:-55092026 Msa1163730:five_prime_UTR
GCAAGAAGAGGGCCAGGCCT+GGG 0.333975 7_4:-55087780 Msa1163730:CDS
TAACCATACCCTTGCCCTAA+TGG 0.338415 7_4:+55090824 None:intergenic
TCTGTTTAATTTACCGATTA+GGG 0.342230 7_4:-55092025 Msa1163730:five_prime_UTR
TGCATTCTAATCTTATGTTT+AGG 0.346668 7_4:-55092679 Msa1163730:five_prime_UTR
ACCTCTTTCTTAAACTCCTT+TGG 0.347068 7_4:+55092553 None:intergenic
GAGTTCTGGTGACCAATAAA+AGG 0.353943 7_4:+55085879 None:intergenic
GAAAGTTCATTCAATATTAG+TGG 0.354416 7_4:-55086769 Msa1163730:CDS
GCAGAAGCTGTAAGAAGCTT+GGG 0.363557 7_4:-55086518 Msa1163730:CDS
TGACGCCCCTTCAATGTTCT+GGG 0.364838 7_4:-55088554 Msa1163730:CDS
AGAGCTTAATAAGAAAAGTA+TGG 0.365328 7_4:-55085631 Msa1163730:three_prime_UTR
AATCACATCACAATATATAA+TGG 0.368044 7_4:+55085586 None:intergenic
TTCAAACTTTACTCCCTAAT+CGG 0.368322 7_4:+55092012 None:intergenic
CATATAATGCATATCCATTA+GGG 0.368715 7_4:-55090838 Msa1163730:CDS
ATGCAATCTGCATTGAGTTC+TGG 0.368808 7_4:-55087970 Msa1163730:CDS
TTCTTCTTCTATATTGTAGT+TGG 0.369340 7_4:+55092386 None:intergenic
TTGGGAAATGGGTGATAATA+TGG 0.369765 7_4:-55088505 Msa1163730:CDS
TTCAAGTGTAATAGAGGGTT+TGG 0.369787 7_4:-55092049 Msa1163730:five_prime_UTR
TTTGATTGTATGTTTGTGTT+TGG 0.374751 7_4:-55085750 Msa1163730:three_prime_UTR
TAACATTAGCATCCACCATT+AGG 0.380986 7_4:+55092832 None:intergenic
CAGAGGAAGTTAGCTAGTTA+GGG 0.384167 7_4:-55091850 Msa1163730:five_prime_UTR
TTCTGAGCAGGGTTCAAGTT+GGG 0.392393 7_4:-55086814 Msa1163730:CDS
CAAGTTGGGCAGTTGAGGTA+GGG 0.392788 7_4:-55086800 Msa1163730:CDS
AGCAAGAAGAGGGCCAGGCC+TGG 0.394004 7_4:-55087781 Msa1163730:CDS
GGAACTTCATGGAGGATTAG+AGG 0.394934 7_4:+55092791 None:intergenic
CCATTAGGACAAATCCAAAA+AGG 0.396210 7_4:+55092847 None:intergenic
CATTCTGCTTATTGGGAAAT+GGG 0.399460 7_4:-55088516 Msa1163730:CDS
TGGATCCTCTAGTTCTGAGC+AGG 0.399527 7_4:-55086826 Msa1163730:CDS
TCCTTTGTTTACAGTATTGT+TGG 0.400842 7_4:-55090744 Msa1163730:intron
TTTGCTTGAGGGTGTCTTTG+AGG 0.401530 7_4:-55091748 Msa1163730:five_prime_UTR
TGGATCAGTTGCCTGTCTCT+TGG 0.401708 7_4:+55087739 None:intergenic
TGATCATCAAAAGATAAATC+TGG 0.403829 7_4:+55085673 None:intergenic
TAAGCTCCTTAATTCGATCT+TGG 0.404174 7_4:+55087719 None:intergenic
CAAAGACACCCTCAAGCAAA+AGG 0.411836 7_4:+55091751 None:intergenic
ACTGATCCAAGATCGAATTA+AGG 0.412041 7_4:-55087725 Msa1163730:CDS
CTCATAAGTCATAACCCAAT+TGG 0.417840 7_4:-55092876 Msa1163730:five_prime_UTR
CCCCTAGGCGTTGTTCAGCT+TGG 0.419014 7_4:-55089878 Msa1163730:CDS
AGTAATAATGATGTTAATAG+TGG 0.420137 7_4:-55088012 Msa1163730:CDS
AGTACTCTCGAATGTTTAGA+AGG 0.420878 7_4:+55092471 None:intergenic
TCAAGTTGGGCAGTTGAGGT+AGG 0.422938 7_4:-55086801 Msa1163730:CDS
ATAAATCTGGAACATCAAAA+AGG 0.423107 7_4:+55085686 None:intergenic
GACATTGACTGAAGCAAAAT+GGG 0.423409 7_4:+55088444 None:intergenic
CAGAGATCAAGAATGAGTTC+TGG 0.426182 7_4:+55085865 None:intergenic
AAGTCCCAAAAGGAACTTCA+TGG 0.432399 7_4:+55092780 None:intergenic
AACAGTAACTGTTTGATTCG+TGG 0.442090 7_4:-55085913 Msa1163730:exon
TTACTCCCTTTCAAAGAAGA+TGG 0.443135 7_4:+55088174 None:intergenic
TGGAAACTTCAACGGTGTAT+AGG 0.443844 7_4:+55088227 None:intergenic
CTGTTGATACACAACGCTCT+TGG 0.444435 7_4:+55085931 None:intergenic
CGCCATTAAAACGGCGAGCT+GGG 0.446408 7_4:-55091905 Msa1163730:five_prime_UTR
TATGATTAATGTGGAGCATC+AGG 0.449098 7_4:-55088418 Msa1163730:CDS
GAAGAGAACCGCCATTAAAA+CGG 0.451794 7_4:-55091914 Msa1163730:five_prime_UTR
AGCAGAAGCTGTAAGAAGCT+TGG 0.453234 7_4:-55086519 Msa1163730:CDS
CAACAGAAATGTACACAGAT+TGG 0.454049 7_4:-55085987 Msa1163730:CDS
GAGAATGAGCTTGTAGTAGT+TGG 0.454136 7_4:+55092293 None:intergenic
CAAATGGAAACAGACATTCT+TGG 0.454352 7_4:-55086846 Msa1163730:CDS
TCTACAACTTTCCCCAGGCC+TGG 0.456634 7_4:+55087768 None:intergenic
CCGCCATTAAAACGGCGAGC+TGG 0.457090 7_4:-55091906 Msa1163730:five_prime_UTR
ATTGCTTCCAAAAGATGCTC+TGG 0.457697 7_4:+55088057 None:intergenic
TGACATATCAAAGTGTTTAA+GGG 0.458315 7_4:+55092185 None:intergenic
CTTGGACCATCTTCTTTGAA+AGG 0.461847 7_4:-55088180 Msa1163730:CDS
GATAATATGGTCAAGCATGA+AGG 0.464680 7_4:-55088492 Msa1163730:CDS
TTGTGGTGTGAGTGATGGGT+TGG 0.466870 7_4:-55091962 Msa1163730:five_prime_UTR
TTATAAGAGGAAGAAGAAGA+TGG 0.466997 7_4:-55091706 Msa1163730:exon
TGTGGTGTGAGTGATGGGTT+GGG 0.468455 7_4:-55091961 Msa1163730:five_prime_UTR
CCTTTGTTTACAGTATTGTT+GGG 0.473762 7_4:-55090743 Msa1163730:intron
TGTTTACAGTATTGTTGGGC+AGG 0.476243 7_4:-55090739 Msa1163730:intron
GCCAAAGGAGTTTAAGAAAG+AGG 0.479233 7_4:-55092554 Msa1163730:five_prime_UTR
AAGTTGGGCAGTTGAGGTAG+GGG 0.482715 7_4:-55086799 Msa1163730:CDS
TTCAATACACCAATCGGAAA+AGG 0.488411 7_4:-55088256 Msa1163730:CDS
CTATGATTCAATACACCAAT+CGG 0.489438 7_4:-55088262 Msa1163730:CDS
TTGGACCATCTTCTTTGAAA+GGG 0.489648 7_4:-55088179 Msa1163730:CDS
TTGTCCTCTCTGACAAGAGA+AGG 0.489749 7_4:+55087901 None:intergenic
TTGCTGAGAAGAAAGTGAAT+AGG 0.490654 7_4:+55092319 None:intergenic
TGTTCCTCCCAGAACATTGA+AGG 0.492163 7_4:+55088547 None:intergenic
GTAGACCTCGGCCAAGAGAC+AGG 0.493853 7_4:-55087750 Msa1163730:CDS
CGGAGGAAGCAAGCTGGAAG+AGG 0.495959 7_4:-55091879 Msa1163730:five_prime_UTR
TTGCAGGATCTTGACATTGG+AGG 0.497906 7_4:-55090987 Msa1163730:intron
CAAGAAGAGGGCCAGGCCTG+GGG 0.498222 7_4:-55087779 Msa1163730:CDS
AATGCGAGGGAGTGTGGAGG+GGG 0.499268 7_4:-55088372 Msa1163730:CDS
GGGTTCAAGTTGGGCAGTTG+AGG 0.499697 7_4:-55086805 Msa1163730:CDS
AAATGTAACTTTAGAAGGAA+AGG 0.500891 7_4:+55092501 None:intergenic
TAAAACGGCGAGCTGGGTTG+CGG 0.503111 7_4:-55091899 Msa1163730:five_prime_UTR
AATGTAACTTTAGAAGGAAA+GGG 0.506221 7_4:+55092502 None:intergenic
GTGTAGTATTGATTCACTAC+TGG 0.507034 7_4:-55087576 Msa1163730:CDS
TAAATGCGAGGGAGTGTGGA+GGG 0.509830 7_4:-55088374 Msa1163730:CDS
AAAGTTACCTTAGCTCCATT+CGG 0.511291 7_4:+55087685 None:intergenic
ATTACTACTGTGACAGATGT+TGG 0.513389 7_4:+55088029 None:intergenic
AATTAAGGAGCTTAGAGAGT+TGG 0.520317 7_4:-55087710 Msa1163730:CDS
ACTGAGTCTTGCTCATTACA+AGG 0.524930 7_4:+55085815 None:intergenic
AAAACAGCAAGAAGAGGGCC+AGG 0.528144 7_4:-55087786 Msa1163730:CDS
CCTGTAAATGCGAGGGAGTG+TGG 0.529660 7_4:-55088378 Msa1163730:CDS
TGACTAGTGTTAAACACATC+CGG 0.531499 7_4:+55088099 None:intergenic
AAAGAGTGACAAAATGTCAA+TGG 0.531997 7_4:+55092343 None:intergenic
AATTCTGCTATAAATAATGT+TGG 0.533904 7_4:-55088288 Msa1163730:CDS
TTGTGTGATTGGAATTTGGA+GGG 0.538053 7_4:-55091808 Msa1163730:five_prime_UTR
TTTGATTCGTGGAAACTTCG+CGG 0.538267 7_4:-55085902 Msa1163730:three_prime_UTR
GAAGACCTTAGAACAGATTG+AGG 0.538646 7_4:-55090909 Msa1163730:CDS
GCCAAGCTGAACAACGCCTA+GGG 0.540978 7_4:+55089877 None:intergenic
TCTCGAATGTTTAGAAGGAA+AGG 0.541813 7_4:+55092476 None:intergenic
ATCGATATGCTTTATCGTTG+AGG 0.544767 7_4:-55086450 Msa1163730:intron
TTTGTGTGATTGGAATTTGG+AGG 0.545243 7_4:-55091809 Msa1163730:five_prime_UTR
GGGTTGCGGAGGAAGCAAGC+TGG 0.549832 7_4:-55091885 Msa1163730:five_prime_UTR
AGTTGCCTGTCTCTTGGCCG+AGG 0.552330 7_4:+55087745 None:intergenic
ATAATATGGTCAAGCATGAA+GGG 0.556894 7_4:-55088491 Msa1163730:CDS
TCAAGTAGTTCACATCCAGC+TGG 0.559673 7_4:+55088207 None:intergenic
ACACCGTTGAAGTTTCCAGC+TGG 0.560171 7_4:-55088222 Msa1163730:CDS
ATGCATATCCATTAGGGCAA+GGG 0.560663 7_4:-55090832 Msa1163730:intron
TATGAAAATTGCGGATGTGC+CGG 0.562668 7_4:-55088118 Msa1163730:CDS
TAGATGATGAACTCAAACAA+TGG 0.565458 7_4:+55087875 None:intergenic
ATTGACTTTGGAGACTAACA+AGG 0.566240 7_4:+55092753 None:intergenic
AAAGACACCCTCAAGCAAAA+GGG 0.568843 7_4:+55091752 None:intergenic
AACGGCGAGCTGGGTTGCGG+AGG 0.569654 7_4:-55091896 Msa1163730:five_prime_UTR
ACTTGCTGATACTAAATCAA+AGG 0.571474 7_4:-55087489 Msa1163730:intron
AATGCATATCCATTAGGGCA+AGG 0.575204 7_4:-55090833 Msa1163730:CDS
CTGTTACTGGAAAGCATCAG+TGG 0.576674 7_4:-55090713 Msa1163730:CDS
ATAAAAGGTTAGAGCGCCAA+AGG 0.577056 7_4:-55092569 Msa1163730:five_prime_UTR
CATCCAGCTGGAAACTTCAA+CGG 0.581618 7_4:+55088219 None:intergenic
GTTCCTCCCAGAACATTGAA+GGG 0.582788 7_4:+55088548 None:intergenic
GTTCTGAGCAGGGTTCAAGT+TGG 0.582839 7_4:-55086815 Msa1163730:CDS
GTTGTGTCTGTAGTTCCCCT+AGG 0.584029 7_4:-55089893 Msa1163730:CDS
ACCTTAGAACAGATTGAGGG+TGG 0.585645 7_4:-55090905 Msa1163730:CDS
GGATCCTCTAGTTCTGAGCA+GGG 0.587080 7_4:-55086825 Msa1163730:CDS
CTTAGAGAGTTGGTACCGAA+TGG 0.588731 7_4:-55087700 Msa1163730:CDS
CAACAGACAGATGCTTATTG+AGG 0.589879 7_4:-55086733 Msa1163730:intron
CGAGGTCTACAACTTTCCCC+AGG 0.591527 7_4:+55087763 None:intergenic
CATTCGAGAGTACTTTAGAT+CGG 0.591727 7_4:-55092462 Msa1163730:five_prime_UTR
AAATGCGAGGGAGTGTGGAG+GGG 0.591820 7_4:-55088373 Msa1163730:CDS
GATAAGACCTGTAAATGCGA+GGG 0.592645 7_4:-55088385 Msa1163730:CDS
AGTGATGGGTTGGGATTGTG+TGG 0.593340 7_4:-55091952 Msa1163730:five_prime_UTR
GACATCTTGAATAGAAGCAT+CGG 0.594521 7_4:+55087939 None:intergenic
GTTGGTACCGAATGGAGCTA+AGG 0.594912 7_4:-55087692 Msa1163730:intron
AAACTTCAACGGTGTATAGG+AGG 0.595634 7_4:+55088230 None:intergenic
ATATTATGCCTGCGTGCATG+AGG 0.596933 7_4:-55088596 Msa1163730:CDS
TGTGAACTACTTGAAGCACT+TGG 0.597240 7_4:-55088198 Msa1163730:CDS
TACACAGATTGGACATCTTG+TGG 0.604378 7_4:-55085976 Msa1163730:CDS
AATTGTTCACTACAAGCACT+AGG 0.605309 7_4:+55087832 None:intergenic
GTCTTTGTTTCAATACTCAG+TGG 0.605365 7_4:-55091656 Msa1163730:CDS
CTGGGGAAAGTTGTAGACCT+CGG 0.606115 7_4:-55087762 Msa1163730:CDS
TGAACCCTGCTCAGAACTAG+AGG 0.606197 7_4:+55086821 None:intergenic
GTAAATGCGAGGGAGTGTGG+AGG 0.608053 7_4:-55088375 Msa1163730:CDS
AAGACCTTAGAACAGATTGA+GGG 0.608096 7_4:-55090908 Msa1163730:CDS
CGAGAGTACTTTAGATCGGA+CGG 0.611164 7_4:-55092458 Msa1163730:five_prime_UTR
CCTCTCTGACAAGAGAAGGA+TGG 0.616107 7_4:+55087905 None:intergenic
ACTCACATCACTATAGAGCT+CGG 0.616116 7_4:+55088467 None:intergenic
AGTTGGGCAGTTGAGGTAGG+GGG 0.617248 7_4:-55086798 Msa1163730:CDS
GATTGTAGTATCTGAACAAG+TGG 0.620442 7_4:+55085953 None:intergenic
AGATAAGACCTGTAAATGCG+AGG 0.621221 7_4:-55088386 Msa1163730:CDS
GAGAAGGATGGTCTATAGTG+TGG 0.624376 7_4:+55087917 None:intergenic
TTCCTCCCAGAACATTGAAG+GGG 0.627170 7_4:+55088549 None:intergenic
TAATCAAGATATGAAAATTG+CGG 0.627898 7_4:-55088127 Msa1163730:CDS
AGCCAAGCTGAACAACGCCT+AGG 0.629984 7_4:+55089876 None:intergenic
TGTGTGGTGCTACAAACAGT+TGG 0.631625 7_4:-55091936 Msa1163730:five_prime_UTR
GGAGGAAGCAAGCTGGAAGA+GGG 0.631639 7_4:-55091878 Msa1163730:five_prime_UTR
CAGAAGCTGTAAGAAGCTTG+GGG 0.638694 7_4:-55086517 Msa1163730:CDS
CGCCCCTTCAATGTTCTGGG+AGG 0.639766 7_4:-55088551 Msa1163730:CDS
CCATCCTTCTCTTGTCAGAG+AGG 0.641149 7_4:-55087905 Msa1163730:CDS
AATGTCTGATATGATTAATG+TGG 0.647024 7_4:-55088427 Msa1163730:CDS
GGAGAATATACTGCAACTTG+CGG 0.655687 7_4:-55085610 Msa1163730:three_prime_UTR
CTGAGTCTTGCTCATTACAA+GGG 0.658378 7_4:+55085816 None:intergenic
GTCTTGCTCATTACAAGGGT+AGG 0.661672 7_4:+55085820 None:intergenic
TTGACTTTGGAGACTAACAA+GGG 0.665925 7_4:+55092754 None:intergenic
GCTGGAAGAGGGTCTTACAG+AGG 0.669202 7_4:-55091867 Msa1163730:five_prime_UTR
TAATATGGTCAAGCATGAAG+GGG 0.670408 7_4:-55088490 Msa1163730:CDS
CCTTAGAACAGATTGAGGGT+GGG 0.678640 7_4:-55090904 Msa1163730:CDS
CTTATGAGTATACTTTATGG+TGG 0.700093 7_4:+55092891 None:intergenic
CCAAGCTGAACAACGCCTAG+GGG 0.707163 7_4:+55089878 None:intergenic
TCCCAAAAGGAACTTCATGG+AGG 0.723239 7_4:+55092783 None:intergenic
GTGCATGAGGAATAAAACAG+TGG 0.796780 7_4:-55088583 Msa1163730:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATTAAATTATATATAAT+TGG + chr7_4:55092164-55092183 None:intergenic 0.0%
!!! TATTTTTTTTTTTTTTTTGC+AGG - chr7_4:55087422-55087441 Msa1163730:intron 10.0%
!! TATATTATTTCAATAAAGTT+TGG + chr7_4:55088366-55088385 None:intergenic 10.0%
!! AAATATTTATTTACAGATTA+TGG + chr7_4:55090999-55091018 None:intergenic 10.0%
!! TTGCATTCAATTTATTATTA+TGG - chr7_4:55086317-55086336 Msa1163730:intron 15.0%
!! AAAAAAAATATAACATGATC+TGG + chr7_4:55087213-55087232 None:intergenic 15.0%
!! AACACTTATAATAATGATAA+TGG - chr7_4:55088215-55088234 Msa1163730:CDS 15.0%
!!! TTGTTGATGATATATTTATT+TGG - chr7_4:55088246-55088265 Msa1163730:CDS 15.0%
!! TATATTTATTTGGAAAAGTA+TGG - chr7_4:55088256-55088275 Msa1163730:CDS 15.0%
!! AAAATTAAACAAACTATACA+AGG + chr7_4:55089252-55089271 None:intergenic 15.0%
!!! ATTTGTCTTATTAAATGTTA+GGG - chr7_4:55089638-55089657 Msa1163730:intron 15.0%
!! ATAAAAACATAATAAATCCA+TGG + chr7_4:55092358-55092377 None:intergenic 15.0%
!!! CAAATTTTAGTTTCTATAAA+TGG - chr7_4:55092880-55092899 Msa1163730:five_prime_UTR 15.0%
!!! ATGAAACAAAAAATTGACTT+TGG + chr7_4:55085687-55085706 None:intergenic 20.0%
!!! ACATATATTTGTTTTTCTTG+TGG + chr7_4:55085786-55085805 None:intergenic 20.0%
!! CAAGAAAAACAAATATATGT+AGG - chr7_4:55085786-55085805 Msa1163730:three_prime_UTR 20.0%
!! GAACGAAATTACAAAATAAA+AGG - chr7_4:55085841-55085860 Msa1163730:three_prime_UTR 20.0%
!!! AGTTTCTAACTTTTTATAAG+AGG - chr7_4:55086706-55086725 Msa1163730:intron 20.0%
!!! CATGTATTGAATCTTTTATT+TGG - chr7_4:55086877-55086896 Msa1163730:intron 20.0%
!!! AAGATTTGAAACTTTCATTT+AGG - chr7_4:55087641-55087660 Msa1163730:intron 20.0%
!!! CTAGATTTTCAAATTTTCTA+CGG + chr7_4:55087819-55087838 None:intergenic 20.0%
!!! TGAAAATCTAGAATTTGTAT+TGG - chr7_4:55087828-55087847 Msa1163730:CDS 20.0%
!!! GAAAATCTAGAATTTGTATT+GGG - chr7_4:55087829-55087848 Msa1163730:CDS 20.0%
!! AACTGAAAATCAAACAAAAA+GGG + chr7_4:55087905-55087924 None:intergenic 20.0%
!! AAACTGAAAATCAAACAAAA+AGG + chr7_4:55087906-55087925 None:intergenic 20.0%
!!! TTTAAAACACAACAAATACA+AGG + chr7_4:55088669-55088688 None:intergenic 20.0%
!!! GATTTGTCTTATTAAATGTT+AGG - chr7_4:55089637-55089656 Msa1163730:intron 20.0%
!!! TTTGTCTTATTAAATGTTAG+GGG - chr7_4:55089639-55089658 Msa1163730:intron 20.0%
!! ATCCTGGTTATAAATAATTA+TGG + chr7_4:55089738-55089757 None:intergenic 20.0%
!! AATTCTGCTATAAATAATGT+TGG - chr7_4:55090137-55090156 Msa1163730:intron 20.0%
!! TAATCAAGATATGAAAATTG+CGG - chr7_4:55090298-55090317 Msa1163730:intron 20.0%
!! AGTAATAATGATGTTAATAG+TGG - chr7_4:55090413-55090432 Msa1163730:intron 20.0%
!! TTAAAACTACTAAAAAGGAA+TGG + chr7_4:55091106-55091125 None:intergenic 20.0%
!!! ATTCCTTTTTAGTAGTTTTA+AGG - chr7_4:55091105-55091124 Msa1163730:intron 20.0%
!! TAACCTTAAAACTACTAAAA+AGG + chr7_4:55091111-55091130 None:intergenic 20.0%
!! ATCAAAAGTAACAAAGTTTA+TGG + chr7_4:55091154-55091173 None:intergenic 20.0%
!!! AAATAGTTAAAGGGTATTAT+TGG + chr7_4:55091194-55091213 None:intergenic 20.0%
!! TACAAAAGTGATCATTAAAA+AGG - chr7_4:55091335-55091354 Msa1163730:intron 20.0%
!!! TTTGTTGTTTTTCTTAAGTT+TGG - chr7_4:55092632-55092651 Msa1163730:five_prime_UTR 20.0%
!!! TTGTTGTTTTTCTTAAGTTT+GGG - chr7_4:55092633-55092652 Msa1163730:five_prime_UTR 20.0%
!! AATCACATCACAATATATAA+TGG + chr7_4:55092842-55092861 None:intergenic 20.0%
! TGACTTATGAGTATACTTTA+TGG + chr7_4:55085540-55085559 None:intergenic 25.0%
! TGCATTCTAATCTTATGTTT+AGG - chr7_4:55085746-55085765 Msa1163730:three_prime_UTR 25.0%
!! AATGTAACTTTAGAAGGAAA+GGG + chr7_4:55085926-55085945 None:intergenic 25.0%
!! AAATGTAACTTTAGAAGGAA+AGG + chr7_4:55085927-55085946 None:intergenic 25.0%
! AGGAAAAATGTAACTTTAGA+AGG + chr7_4:55085932-55085951 None:intergenic 25.0%
! TGGAACTTGAAAAAAGATTA+TGG + chr7_4:55086022-55086041 None:intergenic 25.0%
! TTCTTCTTCTATATTGTAGT+TGG + chr7_4:55086042-55086061 None:intergenic 25.0%
!! TGACATATCAAAGTGTTTAA+GGG + chr7_4:55086243-55086262 None:intergenic 25.0%
!! ATGACATATCAAAGTGTTTA+AGG + chr7_4:55086244-55086263 None:intergenic 25.0%
!! TACTTTGTTCTTGATTTTGA+AGG + chr7_4:55086295-55086314 None:intergenic 25.0%
!! TTCTGTTTAATTTACCGATT+AGG - chr7_4:55086399-55086418 Msa1163730:intron 25.0%
!! TCTGTTTAATTTACCGATTA+GGG - chr7_4:55086400-55086419 Msa1163730:intron 25.0%
! GTTGTAGTAATAACATACAT+TGG + chr7_4:55086831-55086850 None:intergenic 25.0%
!!! TGAATCTTTTATTTGGATGT+TGG - chr7_4:55086884-55086903 Msa1163730:intron 25.0%
!!! ATGAGTTGAAGTTGTATTTT+TGG - chr7_4:55086925-55086944 Msa1163730:intron 25.0%
!! TTAATCATCTTTTAGTGCAA+AGG - chr7_4:55087231-55087250 Msa1163730:intron 25.0%
!! TAGGCATTACCTTAAATTTT+CGG - chr7_4:55087392-55087411 Msa1163730:intron 25.0%
! TCATATAATGCATATCCATT+AGG - chr7_4:55087586-55087605 Msa1163730:intron 25.0%
! CATATAATGCATATCCATTA+GGG - chr7_4:55087587-55087606 Msa1163730:intron 25.0%
! AATAATCAAGTTACAAGTTC+TGG - chr7_4:55087747-55087766 Msa1163730:CDS 25.0%
!!! TTGTTATTTAATATTGTCCC+CGG - chr7_4:55087793-55087812 Msa1163730:CDS 25.0%
! ACTGAAAATCAAACAAAAAG+GGG + chr7_4:55087904-55087923 None:intergenic 25.0%
!!! GCTTACTGATTTATTAGAAT+TGG - chr7_4:55087969-55087988 Msa1163730:CDS 25.0%
!! ACTACGAAATTGTTTTCTAT+CGG + chr7_4:55088438-55088457 None:intergenic 25.0%
!!! CTAGCTGTTGATTTAAATAT+TGG - chr7_4:55088780-55088799 Msa1163730:intron 25.0%
! AAAAGAAAGATAAACAAGTG+AGG - chr7_4:55088862-55088881 Msa1163730:intron 25.0%
! TATAAAACAGTTGCCTAAAT+TGG - chr7_4:55089079-55089098 Msa1163730:intron 25.0%
! AAAAACTAATTAGCTACTTC+TGG + chr7_4:55089127-55089146 None:intergenic 25.0%
! TTAGAGAAAGAGAAACAAAT+AGG + chr7_4:55089164-55089183 None:intergenic 25.0%
! CTTTGGTTAGAAAATTCATT+AGG - chr7_4:55089211-55089230 Msa1163730:intron 25.0%
! AAACTACTTTGTATTTGACT+AGG + chr7_4:55089485-55089504 None:intergenic 25.0%
!! TTGTCTTATTAAATGTTAGG+GGG - chr7_4:55089640-55089659 Msa1163730:intron 25.0%
! TGCCATAATTATTTATAACC+AGG - chr7_4:55089733-55089752 Msa1163730:intron 25.0%
!!! TTAAACTTCTTTTTTTCAGC+CGG - chr7_4:55089779-55089798 Msa1163730:intron 25.0%
! AATGTCTGATATGATTAATG+TGG - chr7_4:55089998-55090017 Msa1163730:intron 25.0%
!!! AAGGGAGTAAATATTTTGAT+TGG - chr7_4:55090264-55090283 Msa1163730:intron 25.0%
!!! GAGTAAATATTTTGATTGGT+TGG - chr7_4:55090268-55090287 Msa1163730:intron 25.0%
!! ACTACATTTTACATCAAGTT+GGG - chr7_4:55091020-55091039 Msa1163730:intron 25.0%
! CAGATTTGCATACAAAATTA+TGG - chr7_4:55091060-55091079 Msa1163730:intron 25.0%
! TGGGATGATAAATAGTTAAA+GGG + chr7_4:55091203-55091222 None:intergenic 25.0%
!!! AATGCAACATAACTGTTTTT+TGG + chr7_4:55091276-55091295 None:intergenic 25.0%
! AAGTGATCATTAAAAAGGAA+CGG - chr7_4:55091340-55091359 Msa1163730:intron 25.0%
! CAGTAGTGTTAATTAAAGAA+GGG + chr7_4:55091542-55091561 None:intergenic 25.0%
! GAAAGTTCATTCAATATTAG+TGG - chr7_4:55091656-55091675 Msa1163730:CDS 25.0%
! ATCAAATTGAAATATTCCAC+AGG + chr7_4:55091733-55091752 None:intergenic 25.0%
! AAATAAACAGTGCAGTAAAA+AGG + chr7_4:55092103-55092122 None:intergenic 25.0%
! TGACAACTGTTATTAAACTA+AGG - chr7_4:55092134-55092153 Msa1163730:five_prime_UTR 25.0%
! GACAACTGTTATTAAACTAA+GGG - chr7_4:55092135-55092154 Msa1163730:five_prime_UTR 25.0%
! ACAAATAAACTCACAATGAT+TGG + chr7_4:55092212-55092231 None:intergenic 25.0%
! TTTGATTGTATGTTTGTGTT+TGG - chr7_4:55092675-55092694 Msa1163730:five_prime_UTR 25.0%
!! ATAAATCTGGAACATCAAAA+AGG + chr7_4:55092742-55092761 None:intergenic 25.0%
! TGATCATCAAAAGATAAATC+TGG + chr7_4:55092755-55092774 None:intergenic 25.0%
! AGAGCTTAATAAGAAAAGTA+TGG - chr7_4:55092794-55092813 Msa1163730:five_prime_UTR 25.0%
CTTATGAGTATACTTTATGG+TGG + chr7_4:55085537-55085556 None:intergenic 30.0%
CAAAAAGGAACAATCCAATT+GGG + chr7_4:55085566-55085585 None:intergenic 30.0%
AAAGAGTGACAAAATGTCAA+TGG + chr7_4:55086085-55086104 None:intergenic 30.0%
! TCTCTTTTTCTCTGTGAAAA+GGG - chr7_4:55086153-55086172 Msa1163730:intron 30.0%
!!! TTGCTTTTCAAGTGTAATAG+AGG - chr7_4:55086370-55086389 Msa1163730:intron 30.0%
!!! TGCTTTTCAAGTGTAATAGA+GGG - chr7_4:55086371-55086390 Msa1163730:intron 30.0%
TTCAAACTTTACTCCCTAAT+CGG + chr7_4:55086416-55086435 None:intergenic 30.0%
!! GTAAAGTTTGAAGCTTTTGT+TGG - chr7_4:55086424-55086443 Msa1163730:intron 30.0%
!! TTTGATTGCTTTTGTGTGAT+TGG - chr7_4:55086606-55086625 Msa1163730:intron 30.0%
!!! TCTTTTTTGGAGGACTAATT+TGG - chr7_4:55086647-55086666 Msa1163730:intron 30.0%
TTATAAGAGGAAGAAGAAGA+TGG - chr7_4:55086719-55086738 Msa1163730:intron 30.0%
! AGTGGAATTATGCAATCTTT+TGG - chr7_4:55086787-55086806 Msa1163730:CDS 30.0%
AAACTCCAAATTACTAGAGA+GGG + chr7_4:55086965-55086984 None:intergenic 30.0%
! TAATTTGGAGTTTGGTATAG+AGG - chr7_4:55086972-55086991 Msa1163730:intron 30.0%
ATACAACCAATTAAGCTAAC+CGG + chr7_4:55087159-55087178 None:intergenic 30.0%
AAAGACAAGGAAGAACATAA+AGG + chr7_4:55087269-55087288 None:intergenic 30.0%
!!! TCTTTTTTTCCTTCCATGTT+TGG - chr7_4:55087284-55087303 Msa1163730:intron 30.0%
GGCAAATGTTAGTAAATTAG+TGG - chr7_4:55087338-55087357 Msa1163730:intron 30.0%
! AGGCATTACCTTAAATTTTC+GGG - chr7_4:55087393-55087412 Msa1163730:intron 30.0%
! AAATTTTCACATGACGCTTT+GGG - chr7_4:55087544-55087563 Msa1163730:CDS 30.0%
TACTGTAAACAAAGGATCTT+AGG + chr7_4:55087677-55087696 None:intergenic 30.0%
! TCCTTTGTTTACAGTATTGT+TGG - chr7_4:55087681-55087700 Msa1163730:intron 30.0%
! CCTTTGTTTACAGTATTGTT+GGG - chr7_4:55087682-55087701 Msa1163730:intron 30.0%
! ATTTTCAAATTTTCTACGGC+CGG + chr7_4:55087815-55087834 None:intergenic 30.0%
CTGAAAATCAAACAAAAAGG+GGG + chr7_4:55087903-55087922 None:intergenic 30.0%
!!! TTTGATTTTCAGTTTGCTGA+TGG - chr7_4:55087911-55087930 Msa1163730:CDS 30.0%
!!! TTGATTTTCAGTTTGCTGAT+GGG - chr7_4:55087912-55087931 Msa1163730:CDS 30.0%
! TCAATTTTCTGCTGGAATTA+GGG - chr7_4:55087943-55087962 Msa1163730:CDS 30.0%
TACATCATGTTGTCAAAAAG+CGG - chr7_4:55088130-55088149 Msa1163730:CDS 30.0%
AGCATCATGAAGAGATATTA+TGG + chr7_4:55088630-55088649 None:intergenic 30.0%
AGTTCTCAAATGACATAACT+AGG + chr7_4:55088902-55088921 None:intergenic 30.0%
ATTTACTAAACTAGAGCTGA+TGG - chr7_4:55088970-55088989 Msa1163730:intron 30.0%
ATGACTCTTTCTACCAATTT+AGG + chr7_4:55089095-55089114 None:intergenic 30.0%
! AAGCTGTTCTATGATTTTGA+TGG - chr7_4:55089285-55089304 Msa1163730:intron 30.0%
! ATGGATTGTAAGATATTTCC+AGG - chr7_4:55089304-55089323 Msa1163730:intron 30.0%
TTCCAGGATATAAACTTATG+AGG - chr7_4:55089320-55089339 Msa1163730:intron 30.0%
TTCCTCATAAGTTTATATCC+TGG + chr7_4:55089325-55089344 None:intergenic 30.0%
TTTGTATTTGACTAGGAATG+TGG + chr7_4:55089478-55089497 None:intergenic 30.0%
AACTGTAGAATTATTACTGC+AGG + chr7_4:55089557-55089576 None:intergenic 30.0%
TTATTAAATGTTAGGGGGTA+AGG - chr7_4:55089645-55089664 Msa1163730:intron 30.0%
TATTAAATGTTAGGGGGTAA+GGG - chr7_4:55089646-55089665 Msa1163730:intron 30.0%
GATTGTTGAGCATTATCATA+AGG - chr7_4:55089755-55089774 Msa1163730:intron 30.0%
CTTGAAGGAAAAATCATCTT+CGG - chr7_4:55089806-55089825 Msa1163730:intron 30.0%
ATAATATGGTCAAGCATGAA+GGG - chr7_4:55089934-55089953 Msa1163730:intron 30.0%
TGGCTGCAAAAATATGATAT+TGG - chr7_4:55090082-55090101 Msa1163730:intron 30.0%
CTATGATTCAATACACCAAT+CGG - chr7_4:55090163-55090182 Msa1163730:intron 30.0%
TAGATGATGAACTCAAACAA+TGG + chr7_4:55090553-55090572 None:intergenic 30.0%
ATCTAAAAACAGCAAGAAGA+GGG - chr7_4:55090634-55090653 Msa1163730:intron 30.0%
ATCACTCAAAATGCAAAAAC+GGG + chr7_4:55090782-55090801 None:intergenic 30.0%
CATCACTCAAAATGCAAAAA+CGG + chr7_4:55090783-55090802 None:intergenic 30.0%
! ACTTGCTGATACTAAATCAA+AGG - chr7_4:55090936-55090955 Msa1163730:CDS 30.0%
CTGATACTAAATCAAAGGTA+AGG - chr7_4:55090941-55090960 Msa1163730:CDS 30.0%
AAATCAAAGGTAAGGTTTAG+AGG - chr7_4:55090949-55090968 Msa1163730:CDS 30.0%
AATCAAAGGTAAGGTTTAGA+GGG - chr7_4:55090950-55090969 Msa1163730:CDS 30.0%
GATTTGAGAAATATATCCTC+TGG - chr7_4:55090972-55090991 Msa1163730:CDS 30.0%
! GACTACATTTTACATCAAGT+TGG - chr7_4:55091019-55091038 Msa1163730:intron 30.0%
AACTACTAAAAAGGAATGGA+GGG + chr7_4:55091102-55091121 None:intergenic 30.0%
AAACTACTAAAAAGGAATGG+AGG + chr7_4:55091103-55091122 None:intergenic 30.0%
GTGGGATGATAAATAGTTAA+AGG + chr7_4:55091204-55091223 None:intergenic 30.0%
TTTCCTAAACATGTACCTTT+AGG - chr7_4:55091417-55091436 Msa1163730:intron 30.0%
! TATCCTAAAGGTACATGTTT+AGG + chr7_4:55091423-55091442 None:intergenic 30.0%
CAACTTGAAATGTATCCTAA+AGG + chr7_4:55091435-55091454 None:intergenic 30.0%
GCAGTAGTGTTAATTAAAGA+AGG + chr7_4:55091543-55091562 None:intergenic 30.0%
! AATTTTGCAGTTGCATCAAA+TGG - chr7_4:55091563-55091582 Msa1163730:intron 30.0%
!! CTTCTGCTATTTCAAGAAAA+TGG + chr7_4:55091894-55091913 None:intergenic 30.0%
TACGTGTTCTAGTAAAGAAA+AGG + chr7_4:55092286-55092305 None:intergenic 30.0%
TGATGAACAAATTGTGTATC+AGG - chr7_4:55092408-55092427 Msa1163730:five_prime_UTR 30.0%
GATGAACAAATTGTGTATCA+GGG - chr7_4:55092409-55092428 Msa1163730:five_prime_UTR 30.0%
! TGTTTTTCTTAAGTTTGGGT+TGG - chr7_4:55092637-55092656 Msa1163730:five_prime_UTR 30.0%
! CTTTTCTTATTAAGCTCTCA+AGG + chr7_4:55092792-55092811 None:intergenic 30.0%
CTCATAAGTCATAACCCAAT+TGG - chr7_4:55085549-55085568 Msa1163730:three_prime_UTR 35.0%
CCAAAAAGGAACAATCCAAT+TGG + chr7_4:55085567-55085586 None:intergenic 35.0%
! CCAATTGGATTGTTCCTTTT+TGG - chr7_4:55085564-55085583 Msa1163730:three_prime_UTR 35.0%
CCATTAGGACAAATCCAAAA+AGG + chr7_4:55085581-55085600 None:intergenic 35.0%
! CCTTTTTGGATTTGTCCTAA+TGG - chr7_4:55085578-55085597 Msa1163730:three_prime_UTR 35.0%
! TTTTGGATTTGTCCTAATGG+TGG - chr7_4:55085581-55085600 Msa1163730:three_prime_UTR 35.0%
TAACATTAGCATCCACCATT+AGG + chr7_4:55085596-55085615 None:intergenic 35.0%
! TTGACTTTGGAGACTAACAA+GGG + chr7_4:55085674-55085693 None:intergenic 35.0%
! ATTGACTTTGGAGACTAACA+AGG + chr7_4:55085675-55085694 None:intergenic 35.0%
ACCTCTTTCTTAAACTCCTT+TGG + chr7_4:55085875-55085894 None:intergenic 35.0%
TCTCGAATGTTTAGAAGGAA+AGG + chr7_4:55085952-55085971 None:intergenic 35.0%
AGTACTCTCGAATGTTTAGA+AGG + chr7_4:55085957-55085976 None:intergenic 35.0%
!! CATTCGAGAGTACTTTAGAT+CGG - chr7_4:55085963-55085982 Msa1163730:CDS 35.0%
TTGCTGAGAAGAAAGTGAAT+AGG + chr7_4:55086109-55086128 None:intergenic 35.0%
! CTCTCTTTTTCTCTGTGAAA+AGG - chr7_4:55086152-55086171 Msa1163730:intron 35.0%
TTCAAGTGTAATAGAGGGTT+TGG - chr7_4:55086376-55086395 Msa1163730:intron 35.0%
!! AAGTTTGAAGCTTTTGTTGG+TGG - chr7_4:55086427-55086446 Msa1163730:intron 35.0%
!! AGTTTGAAGCTTTTGTTGGT+GGG - chr7_4:55086428-55086447 Msa1163730:intron 35.0%
! AATTTTGTGGTGTGAGTGAT+GGG - chr7_4:55086459-55086478 Msa1163730:CDS 35.0%
! GCTTTTGTGTGATTGGAATT+TGG - chr7_4:55086613-55086632 Msa1163730:intron 35.0%
TTTGTGTGATTGGAATTTGG+AGG - chr7_4:55086616-55086635 Msa1163730:intron 35.0%
TTGTGTGATTGGAATTTGGA+GGG - chr7_4:55086617-55086636 Msa1163730:intron 35.0%
! GGAGGGTTTTTCTTCTTTTT+TGG - chr7_4:55086634-55086653 Msa1163730:intron 35.0%
!!! GGGTTTTTCTTCTTTTTTGG+AGG - chr7_4:55086637-55086656 Msa1163730:intron 35.0%
! GTCTTTGTTTCAATACTCAG+TGG - chr7_4:55086769-55086788 Msa1163730:CDS 35.0%
GCACACAAAAAAAGGAGTAA+AGG + chr7_4:55086853-55086872 None:intergenic 35.0%
CATGTGATGCACACAAAAAA+AGG + chr7_4:55086861-55086880 None:intergenic 35.0%
AATTACTAGAGAGGGATTGA+GGG + chr7_4:55086957-55086976 None:intergenic 35.0%
AAATTACTAGAGAGGGATTG+AGG + chr7_4:55086958-55086977 None:intergenic 35.0%
TCAATCCCTCTCTAGTAATT+TGG - chr7_4:55086957-55086976 Msa1163730:intron 35.0%
CAAACTCCAAATTACTAGAG+AGG + chr7_4:55086966-55086985 None:intergenic 35.0%
! CTCTCTAGTAATTTGGAGTT+TGG - chr7_4:55086964-55086983 Msa1163730:intron 35.0%
TACCAAAGATTATTCCAGCA+AGG - chr7_4:55087005-55087024 Msa1163730:intron 35.0%
ATCCTTGCTGGAATAATCTT+TGG + chr7_4:55087010-55087029 None:intergenic 35.0%
! TTTTGCATGATTGTATCCCT+TGG - chr7_4:55087102-55087121 Msa1163730:intron 35.0%
CGATTCAAATTTCAGACCAA+GGG + chr7_4:55087121-55087140 None:intergenic 35.0%
! CCTTGGTCTGAAATTTGAAT+CGG - chr7_4:55087119-55087138 Msa1163730:intron 35.0%
CATGGAAGGAAAAAAAGACA+AGG + chr7_4:55087282-55087301 None:intergenic 35.0%
TGAAAATCACCAAACATGGA+AGG + chr7_4:55087296-55087315 None:intergenic 35.0%
GCATTGAAAATCACCAAACA+TGG + chr7_4:55087300-55087319 None:intergenic 35.0%
! TTCAATGCCTGTCGTTATTT+TGG - chr7_4:55087312-55087331 Msa1163730:intron 35.0%
TTCACTTAGCACAAAGAGTT+AGG - chr7_4:55087373-55087392 Msa1163730:intron 35.0%
!! TACCTTAAATTTTCGGGATG+TGG - chr7_4:55087399-55087418 Msa1163730:intron 35.0%
TACCACATCCCGAAAATTTA+AGG + chr7_4:55087404-55087423 None:intergenic 35.0%
! TTTTTGCAGGATCTTGACAT+TGG - chr7_4:55087435-55087454 Msa1163730:intron 35.0%
AAGACCTTAGAACAGATTGA+GGG - chr7_4:55087517-55087536 Msa1163730:CDS 35.0%
! GAAATTTTCACATGACGCTT+TGG - chr7_4:55087543-55087562 Msa1163730:CDS 35.0%
! AATTTTCACATGACGCTTTG+GGG - chr7_4:55087545-55087564 Msa1163730:CDS 35.0%
CCCAACAATACTGTAAACAA+AGG + chr7_4:55087685-55087704 None:intergenic 35.0%
! TTTTCAAATTTTCTACGGCC+GGG + chr7_4:55087814-55087833 None:intergenic 35.0%
! CTCAATTTTCTGCTGGAATT+AGG - chr7_4:55087942-55087961 Msa1163730:CDS 35.0%
GTATTACTATCGGTATTGTG+AGG + chr7_4:55088034-55088053 None:intergenic 35.0%
ACACTGCTTGGTATTACTAT+CGG + chr7_4:55088044-55088063 None:intergenic 35.0%
! TTGGAAAAGTATGGTTCATG+TGG - chr7_4:55088265-55088284 Msa1163730:CDS 35.0%
AGTATGGTTCATGTGGTAAT+AGG - chr7_4:55088272-55088291 Msa1163730:CDS 35.0%
! TTTTCTATCGGCGAATTTCT+AGG + chr7_4:55088426-55088445 None:intergenic 35.0%
CACAACAACAATTGTCTACA+AGG + chr7_4:55088518-55088537 None:intergenic 35.0%
AGCAAGTCATGAAATCTGAA+TGG + chr7_4:55088728-55088747 None:intergenic 35.0%
CTCAAATGACATAACTAGGA+GGG + chr7_4:55088898-55088917 None:intergenic 35.0%
TCTCAAATGACATAACTAGG+AGG + chr7_4:55088899-55088918 None:intergenic 35.0%
GAGTTCAATATGCAAGTCTT+TGG - chr7_4:55089194-55089213 Msa1163730:intron 35.0%
TTTAAAGAGCTCTTCATCTC+AGG - chr7_4:55089502-55089521 Msa1163730:intron 35.0%
GATTTGTGTAACAATTCGCA+TGG - chr7_4:55089668-55089687 Msa1163730:intron 35.0%
! ATGATAATGCTCAACAATCC+TGG + chr7_4:55089754-55089773 None:intergenic 35.0%
! GATTTTTCCTTCAAGACATC+CGG + chr7_4:55089801-55089820 None:intergenic 35.0%
ACACAACTCATTCTGCTTAT+TGG - chr7_4:55089901-55089920 Msa1163730:CDS 35.0%
CACAACTCATTCTGCTTATT+GGG - chr7_4:55089902-55089921 Msa1163730:CDS 35.0%
TCATTCTGCTTATTGGGAAA+TGG - chr7_4:55089908-55089927 Msa1163730:intron 35.0%
CATTCTGCTTATTGGGAAAT+GGG - chr7_4:55089909-55089928 Msa1163730:intron 35.0%
TTGGGAAATGGGTGATAATA+TGG - chr7_4:55089920-55089939 Msa1163730:intron 35.0%
GATAATATGGTCAAGCATGA+AGG - chr7_4:55089933-55089952 Msa1163730:intron 35.0%
TAATATGGTCAAGCATGAAG+GGG - chr7_4:55089935-55089954 Msa1163730:intron 35.0%
! GACATTGACTGAAGCAAAAT+GGG + chr7_4:55089984-55090003 None:intergenic 35.0%
! AGACATTGACTGAAGCAAAA+TGG + chr7_4:55089985-55090004 None:intergenic 35.0%
! TATGATTAATGTGGAGCATC+AGG - chr7_4:55090007-55090026 Msa1163730:intron 35.0%
TTCAATACACCAATCGGAAA+AGG - chr7_4:55090169-55090188 Msa1163730:intron 35.0%
! TTGGACCATCTTCTTTGAAA+GGG - chr7_4:55090246-55090265 Msa1163730:intron 35.0%
TTACTCCCTTTCAAAGAAGA+TGG + chr7_4:55090254-55090273 None:intergenic 35.0%
!!! ATATTTTGATTGGTTGGCTC+AGG - chr7_4:55090274-55090293 Msa1163730:intron 35.0%
TGACTAGTGTTAAACACATC+CGG + chr7_4:55090329-55090348 None:intergenic 35.0%
ATTACTACTGTGACAGATGT+TGG + chr7_4:55090399-55090418 None:intergenic 35.0%
! GACATCTTGAATAGAAGCAT+CGG + chr7_4:55090489-55090508 None:intergenic 35.0%
AATTGTTCACTACAAGCACT+AGG + chr7_4:55090596-55090615 None:intergenic 35.0%
!!! CTCTTCTTGCTGTTTTTAGA+TGG + chr7_4:55090635-55090654 None:intergenic 35.0%
CATCTAAAAACAGCAAGAAG+AGG - chr7_4:55090633-55090652 Msa1163730:intron 35.0%
ACTGATCCAAGATCGAATTA+AGG - chr7_4:55090700-55090719 Msa1163730:CDS 35.0%
TAAGCTCCTTAATTCGATCT+TGG + chr7_4:55090709-55090728 None:intergenic 35.0%
AATTAAGGAGCTTAGAGAGT+TGG - chr7_4:55090715-55090734 Msa1163730:CDS 35.0%
AAAGTTACCTTAGCTCCATT+CGG + chr7_4:55090743-55090762 None:intergenic 35.0%
!! CGTTTTTGCATTTTGAGTGA+TGG - chr7_4:55090781-55090800 Msa1163730:intron 35.0%
!! GTGTAGTATTGATTCACTAC+TGG - chr7_4:55090849-55090868 Msa1163730:CDS 35.0%
ATTTACAGATTATGGACCAG+AGG + chr7_4:55090991-55091010 None:intergenic 35.0%
TGATCATTAAAAAGGAACGG+AGG - chr7_4:55091343-55091362 Msa1163730:intron 35.0%
GATCATTAAAAAGGAACGGA+GGG - chr7_4:55091344-55091363 Msa1163730:intron 35.0%
CTGTTTCCAGTATTAAACCA+GGG + chr7_4:55091386-55091405 None:intergenic 35.0%
ACTGTTTCCAGTATTAAACC+AGG + chr7_4:55091387-55091406 None:intergenic 35.0%
TGGTTTAATACTGGAAACAG+TGG - chr7_4:55091386-55091405 Msa1163730:intron 35.0%
CAAATGGAAACAGACATTCT+TGG - chr7_4:55091579-55091598 Msa1163730:intron 35.0%
ATGTATGCAATACCTCAACA+GGG + chr7_4:55091819-55091838 None:intergenic 35.0%
AATGTATGCAATACCTCAAC+AGG + chr7_4:55091820-55091839 None:intergenic 35.0%
! TTGGGGCTTACAATTTTGAA+GGG - chr7_4:55091925-55091944 Msa1163730:five_prime_UTR 35.0%
ATCGATATGCTTTATCGTTG+AGG - chr7_4:55091975-55091994 Msa1163730:five_prime_UTR 35.0%
!! CAAGCCTTATTCCTATAGAT+CGG + chr7_4:55092053-55092072 None:intergenic 35.0%
CAACAGAAATGTACACAGAT+TGG - chr7_4:55092438-55092457 Msa1163730:five_prime_UTR 35.0%
GATTGTAGTATCTGAACAAG+TGG + chr7_4:55092475-55092494 None:intergenic 35.0%
! AACAGTAACTGTTTGATTCG+TGG - chr7_4:55092512-55092531 Msa1163730:five_prime_UTR 35.0%
! AATCTGGAACATCAAAAAGG+TGG + chr7_4:55092739-55092758 None:intergenic 35.0%
! ATCCTCCATGAAGTTCCTTT+TGG - chr7_4:55085640-55085659 Msa1163730:three_prime_UTR 40.0%
! TCCTCCATGAAGTTCCTTTT+GGG - chr7_4:55085641-55085660 Msa1163730:three_prime_UTR 40.0%
AAGTCCCAAAAGGAACTTCA+TGG + chr7_4:55085648-55085667 None:intergenic 40.0%
ACAAGGGAAAAAGTCCCAAA+AGG + chr7_4:55085658-55085677 None:intergenic 40.0%
! ATAAAAGGTTAGAGCGCCAA+AGG - chr7_4:55085856-55085875 Msa1163730:three_prime_UTR 40.0%
GCCAAAGGAGTTTAAGAAAG+AGG - chr7_4:55085871-55085890 Msa1163730:three_prime_UTR 40.0%
GAGAATGAGCTTGTAGTAGT+TGG + chr7_4:55086135-55086154 None:intergenic 40.0%
!! GTTTGAAGCTTTTGTTGGTG+GGG - chr7_4:55086429-55086448 Msa1163730:intron 40.0%
! GAATTTTGTGGTGTGAGTGA+TGG - chr7_4:55086458-55086477 Msa1163730:CDS 40.0%
GAAGAGAACCGCCATTAAAA+CGG - chr7_4:55086511-55086530 Msa1163730:CDS 40.0%
ACAGAGGAAGTTAGCTAGTT+AGG - chr7_4:55086574-55086593 Msa1163730:intron 40.0%
CAGAGGAAGTTAGCTAGTTA+GGG - chr7_4:55086575-55086594 Msa1163730:intron 40.0%
AAAGACACCCTCAAGCAAAA+GGG + chr7_4:55086676-55086695 None:intergenic 40.0%
ATCATTCGTCAAATCCTTGC+TGG + chr7_4:55087022-55087041 None:intergenic 40.0%
TGGTTAATGAGCTTCAGCTA+AGG + chr7_4:55087049-55087068 None:intergenic 40.0%
ACCATTTGAGTCCAACCAAT+TGG - chr7_4:55087065-55087084 Msa1163730:intron 40.0%
ACTACAACTTCACAGCCAAT+TGG + chr7_4:55087083-55087102 None:intergenic 40.0%
CCGATTCAAATTTCAGACCA+AGG + chr7_4:55087122-55087141 None:intergenic 40.0%
ATCGGTCTTCTAAACATGTC+CGG - chr7_4:55087137-55087156 Msa1163730:intron 40.0%
!! ACATGTCCGGTTAGCTTAAT+TGG - chr7_4:55087150-55087169 Msa1163730:intron 40.0%
!!! TGCCTGTCGTTATTTTGGAT+AGG - chr7_4:55087317-55087336 Msa1163730:intron 40.0%
TGCCTATCCAAAATAACGAC+AGG + chr7_4:55087322-55087341 None:intergenic 40.0%
GAAGACCTTAGAACAGATTG+AGG - chr7_4:55087516-55087535 Msa1163730:CDS 40.0%
AATGCATATCCATTAGGGCA+AGG - chr7_4:55087592-55087611 Msa1163730:intron 40.0%
ATGCATATCCATTAGGGCAA+GGG - chr7_4:55087593-55087612 Msa1163730:intron 40.0%
AACAAAGGATCTTAGGACGA+GGG + chr7_4:55087670-55087689 None:intergenic 40.0%
AAACAAAGGATCTTAGGACG+AGG + chr7_4:55087671-55087690 None:intergenic 40.0%
TGTTTACAGTATTGTTGGGC+AGG - chr7_4:55087686-55087705 Msa1163730:intron 40.0%
!!! AAGTTCTGGCTTGTCTTTTG+AGG - chr7_4:55087761-55087780 Msa1163730:CDS 40.0%
! TTTCAAATTTTCTACGGCCG+GGG + chr7_4:55087813-55087832 None:intergenic 40.0%
AAAAGGGGGAAGAATGAGAA+TGG + chr7_4:55087889-55087908 None:intergenic 40.0%
!!! ATTTTCAGTTTGCTGATGGG+TGG - chr7_4:55087915-55087934 Msa1163730:CDS 40.0%
! TGGCAATCTCAATTTTCTGC+TGG - chr7_4:55087935-55087954 Msa1163730:CDS 40.0%
TTACTATCGGTATTGTGAGG+TGG + chr7_4:55088031-55088050 None:intergenic 40.0%
! TACCAAGCAGTGTTGTTAAC+TGG - chr7_4:55088051-55088070 Msa1163730:CDS 40.0%
TACCAGTTAACAACACTGCT+TGG + chr7_4:55088056-55088075 None:intergenic 40.0%
AATGAGCCAGAGTCATGTAA+TGG + chr7_4:55088321-55088340 None:intergenic 40.0%
ATATTATGGCGCTCAAGCAA+AGG + chr7_4:55088616-55088635 None:intergenic 40.0%
AACCTGACGTGATGTTAGTA+TGG - chr7_4:55089019-55089038 Msa1163730:intron 40.0%
CTGCAGGTGAATGAAGATAT+GGG - chr7_4:55089398-55089417 Msa1163730:intron 40.0%
TGCAGGTGAATGAAGATATG+GGG - chr7_4:55089399-55089418 Msa1163730:intron 40.0%
ATTATTACTGCAGGCAATCC+AGG + chr7_4:55089548-55089567 None:intergenic 40.0%
!! CTCGACCATTGATTTGAGAT+TGG - chr7_4:55089593-55089612 Msa1163730:intron 40.0%
GTCGTCCAATCTCAAATCAA+TGG + chr7_4:55089601-55089620 None:intergenic 40.0%
TGTTAGTGAACACGTGACAA+TGG + chr7_4:55089694-55089713 None:intergenic 40.0%
TTGTCACGTGTTCACTAACA+TGG - chr7_4:55089694-55089713 Msa1163730:intron 40.0%
GTGCATGAGGAATAAAACAG+TGG - chr7_4:55089842-55089861 Msa1163730:intron 40.0%
ACTCACATCACTATAGAGCT+CGG + chr7_4:55089961-55089980 None:intergenic 40.0%
! AATGTGGAGCATCAGGAATT+TGG - chr7_4:55090014-55090033 Msa1163730:intron 40.0%
AGATAAGACCTGTAAATGCG+AGG - chr7_4:55090039-55090058 Msa1163730:intron 40.0%
GATAAGACCTGTAAATGCGA+GGG - chr7_4:55090040-55090059 Msa1163730:intron 40.0%
AAACTTCAACGGTGTATAGG+AGG + chr7_4:55090198-55090217 None:intergenic 40.0%
TGGAAACTTCAACGGTGTAT+AGG + chr7_4:55090201-55090220 None:intergenic 40.0%
! TGTGAACTACTTGAAGCACT+TGG - chr7_4:55090227-55090246 Msa1163730:intron 40.0%
CTTGGACCATCTTCTTTGAA+AGG - chr7_4:55090245-55090264 Msa1163730:intron 40.0%
TATGAAAATTGCGGATGTGC+CGG - chr7_4:55090307-55090326 Msa1163730:intron 40.0%
!! ATCTCATCCAGAGCATCTTT+TGG - chr7_4:55090361-55090380 Msa1163730:intron 40.0%
ATTGCTTCCAAAAGATGCTC+TGG + chr7_4:55090371-55090390 None:intergenic 40.0%
!! AGAGCATCTTTTGGAAGCAA+TGG - chr7_4:55090370-55090389 Msa1163730:intron 40.0%
ATGCAATCTGCATTGAGTTC+TGG - chr7_4:55090455-55090474 Msa1163730:intron 40.0%
TTTGAGTGATGGTTGCAGTT+CGG - chr7_4:55090792-55090811 Msa1163730:intron 40.0%
! GAGACAGAAATAGGTTGAGT+GGG + chr7_4:55091222-55091241 None:intergenic 40.0%
! AGAGACAGAAATAGGTTGAG+TGG + chr7_4:55091223-55091242 None:intergenic 40.0%
TACTGCAGAGAGACAGAAAT+AGG + chr7_4:55091231-55091250 None:intergenic 40.0%
TTCTCACCCTGGTTTAATAC+TGG - chr7_4:55091377-55091396 Msa1163730:intron 40.0%
CAACAGACAGATGCTTATTG+AGG - chr7_4:55091692-55091711 Msa1163730:exon 40.0%
TGTATGCAATACCTCAACAG+GGG + chr7_4:55091818-55091837 None:intergenic 40.0%
! CTTGGGGCTTACAATTTTGA+AGG - chr7_4:55091924-55091943 Msa1163730:five_prime_UTR 40.0%
CCTTATTCCTATAGATCGGT+TGG + chr7_4:55092049-55092068 None:intergenic 40.0%
CCAACCGATCTATAGGAATA+AGG - chr7_4:55092046-55092065 Msa1163730:five_prime_UTR 40.0%
CGATCTATAGGAATAAGGCT+TGG - chr7_4:55092051-55092070 Msa1163730:five_prime_UTR 40.0%
TACCAATTGAAACTGCTCCA+TGG - chr7_4:55092338-55092357 Msa1163730:five_prime_UTR 40.0%
ATCCATGGAGCAGTTTCAAT+TGG + chr7_4:55092343-55092362 None:intergenic 40.0%
TACACAGATTGGACATCTTG+TGG - chr7_4:55092449-55092468 Msa1163730:five_prime_UTR 40.0%
! TTTGATTCGTGGAAACTTCG+CGG - chr7_4:55092523-55092542 Msa1163730:five_prime_UTR 40.0%
! GAGTTCTGGTGACCAATAAA+AGG + chr7_4:55092549-55092568 None:intergenic 40.0%
CAGAGATCAAGAATGAGTTC+TGG + chr7_4:55092563-55092582 None:intergenic 40.0%
CTGAGTCTTGCTCATTACAA+GGG + chr7_4:55092612-55092631 None:intergenic 40.0%
ACTGAGTCTTGCTCATTACA+AGG + chr7_4:55092613-55092632 None:intergenic 40.0%
AAAAAGGTGGCACTAAGAAC+TGG + chr7_4:55092726-55092745 None:intergenic 40.0%
GGAGAATATACTGCAACTTG+CGG - chr7_4:55092815-55092834 Msa1163730:five_prime_UTR 40.0%
GGAACTTCATGGAGGATTAG+AGG + chr7_4:55085637-55085656 None:intergenic 45.0%
TCCCAAAAGGAACTTCATGG+AGG + chr7_4:55085645-55085664 None:intergenic 45.0%
!! CGAGAGTACTTTAGATCGGA+CGG - chr7_4:55085967-55085986 Msa1163730:CDS 45.0%
!! TGTGTGGTGCTACAAACAGT+TGG - chr7_4:55086489-55086508 Msa1163730:CDS 45.0%
! TTTGGAGACCCTTTTGCTTG+AGG - chr7_4:55086665-55086684 Msa1163730:intron 45.0%
! TTGGAGACCCTTTTGCTTGA+GGG - chr7_4:55086666-55086685 Msa1163730:intron 45.0%
CAAAGACACCCTCAAGCAAA+AGG + chr7_4:55086677-55086696 None:intergenic 45.0%
!! TTTGCTTGAGGGTGTCTTTG+AGG - chr7_4:55086677-55086696 Msa1163730:intron 45.0%
GCCAATTGGTTGGACTCAAA+TGG + chr7_4:55087069-55087088 None:intergenic 45.0%
CAACTTCACAGCCAATTGGT+TGG + chr7_4:55087079-55087098 None:intergenic 45.0%
TTGCAGGATCTTGACATTGG+AGG - chr7_4:55087438-55087457 Msa1163730:intron 45.0%
ACCTTAGAACAGATTGAGGG+TGG - chr7_4:55087520-55087539 Msa1163730:CDS 45.0%
CCTTAGAACAGATTGAGGGT+GGG - chr7_4:55087521-55087540 Msa1163730:CDS 45.0%
TATCCATTAGGGCAAGGGTA+TGG - chr7_4:55087598-55087617 Msa1163730:intron 45.0%
TAACCATACCCTTGCCCTAA+TGG + chr7_4:55087604-55087623 None:intergenic 45.0%
!! CTGTTACTGGAAAGCATCAG+TGG - chr7_4:55087712-55087731 Msa1163730:CDS 45.0%
GTGTTGTCAACTGTAGATCG+CGG + chr7_4:55088200-55088219 None:intergenic 45.0%
ACCAAGCCATTACATGACTC+TGG - chr7_4:55088312-55088331 Msa1163730:CDS 45.0%
CTCCATACTAACATCACGTC+AGG + chr7_4:55089024-55089043 None:intergenic 45.0%
GCTGCAGGTGAATGAAGATA+TGG - chr7_4:55089397-55089416 Msa1163730:intron 45.0%
GCAGGTGAATGAAGATATGG+GGG - chr7_4:55089400-55089419 Msa1163730:intron 45.0%
CAGGTAAGCTTCTTCGTACA+CGG - chr7_4:55089521-55089540 Msa1163730:intron 45.0%
TCACTAACATGGAAAGCGAG+TGG - chr7_4:55089705-55089724 Msa1163730:intron 45.0%
! TTTTCAGCCGGATGTCTTGA+AGG - chr7_4:55089791-55089810 Msa1163730:intron 45.0%
ATATTATGCCTGCGTGCATG+AGG - chr7_4:55089829-55089848 Msa1163730:intron 45.0%
!! GTTTTATTCCTCATGCACGC+AGG + chr7_4:55089840-55089859 None:intergenic 45.0%
TTCCTCCCAGAACATTGAAG+GGG + chr7_4:55089879-55089898 None:intergenic 45.0%
GTTCCTCCCAGAACATTGAA+GGG + chr7_4:55089880-55089899 None:intergenic 45.0%
TGTTCCTCCCAGAACATTGA+AGG + chr7_4:55089881-55089900 None:intergenic 45.0%
! AGGAGGAATCCTTTTCCGAT+TGG + chr7_4:55090181-55090200 None:intergenic 45.0%
CATCCAGCTGGAAACTTCAA+CGG + chr7_4:55090209-55090228 None:intergenic 45.0%
TCAAGTAGTTCACATCCAGC+TGG + chr7_4:55090221-55090240 None:intergenic 45.0%
!! GCATCTTTTGGAAGCAATGG+TGG - chr7_4:55090373-55090392 Msa1163730:intron 45.0%
!! CTTAGAGAGTTGGTACCGAA+TGG - chr7_4:55090725-55090744 Msa1163730:CDS 45.0%
TTGAGTGATGGTTGCAGTTC+GGG - chr7_4:55090793-55090812 Msa1163730:intron 45.0%
! TTCTGAGCAGGGTTCAAGTT+GGG - chr7_4:55091611-55091630 Msa1163730:intron 45.0%
AAGAAAAACTCCCCCTGTTG+AGG - chr7_4:55091804-55091823 Msa1163730:five_prime_UTR 45.0%
GTATGCAATACCTCAACAGG+GGG + chr7_4:55091817-55091836 None:intergenic 45.0%
AGCAGAAGCTGTAAGAAGCT+TGG - chr7_4:55091906-55091925 Msa1163730:five_prime_UTR 45.0%
GCAGAAGCTGTAAGAAGCTT+GGG - chr7_4:55091907-55091926 Msa1163730:five_prime_UTR 45.0%
CAGAAGCTGTAAGAAGCTTG+GGG - chr7_4:55091908-55091927 Msa1163730:five_prime_UTR 45.0%
AACCTAGCCAACCGATCTAT+AGG - chr7_4:55092039-55092058 Msa1163730:five_prime_UTR 45.0%
! TTCCTATAGATCGGTTGGCT+AGG + chr7_4:55092044-55092063 None:intergenic 45.0%
CTGTTGATACACAACGCTCT+TGG + chr7_4:55092497-55092516 None:intergenic 45.0%
! GAAACTTCGCGGCCTTTTAT+TGG - chr7_4:55092534-55092553 Msa1163730:five_prime_UTR 45.0%
GTCTTGCTCATTACAAGGGT+AGG + chr7_4:55092608-55092627 None:intergenic 45.0%
!!! TATTTTTATAGTATATAATT+AGG + chr7_4:55088823-55088842 None:intergenic 5.0%
!! TGAAGCTTTTGTTGGTGGGG+TGG - chr7_4:55086432-55086451 Msa1163730:intron 50.0%
!! TTGTGGTGTGAGTGATGGGT+TGG - chr7_4:55086463-55086482 Msa1163730:CDS 50.0%
!! TGTGGTGTGAGTGATGGGTT+GGG - chr7_4:55086464-55086483 Msa1163730:CDS 50.0%
!! AGTGATGGGTTGGGATTGTG+TGG - chr7_4:55086473-55086492 Msa1163730:CDS 50.0%
!! AACCCAGCTCGCCGTTTTAA+TGG + chr7_4:55086525-55086544 None:intergenic 50.0%
CCCACCCTCAATCTGTTCTA+AGG + chr7_4:55087524-55087543 None:intergenic 50.0%
GGGGGAAGAATGAGAATGGT+AGG + chr7_4:55087885-55087904 None:intergenic 50.0%
GCCAGAGTCATGTAATGGCT+TGG + chr7_4:55088316-55088335 None:intergenic 50.0%
GTTGTGTCTGTAGTTCCCCT+AGG - chr7_4:55088532-55088551 Msa1163730:CDS 50.0%
TTGACGCCCCTTCAATGTTC+TGG - chr7_4:55089870-55089889 Msa1163730:CDS 50.0%
TGACGCCCCTTCAATGTTCT+GGG - chr7_4:55089871-55089890 Msa1163730:CDS 50.0%
! TAAATGCGAGGGAGTGTGGA+GGG - chr7_4:55090051-55090070 Msa1163730:intron 50.0%
ACACCGTTGAAGTTTCCAGC+TGG - chr7_4:55090203-55090222 Msa1163730:intron 50.0%
AAAACAGCAAGAAGAGGGCC+AGG - chr7_4:55090639-55090658 Msa1163730:intron 50.0%
CTGGGGAAAGTTGTAGACCT+CGG - chr7_4:55090663-55090682 Msa1163730:intron 50.0%
TGGATCAGTTGCCTGTCTCT+TGG + chr7_4:55090689-55090708 None:intergenic 50.0%
! GTTGGTACCGAATGGAGCTA+AGG - chr7_4:55090733-55090752 Msa1163730:CDS 50.0%
! GAGTAGCTGATTTCTCACCC+TGG - chr7_4:55091366-55091385 Msa1163730:intron 50.0%
!! TGGATCCTCTAGTTCTGAGC+AGG - chr7_4:55091599-55091618 Msa1163730:intron 50.0%
!! GGATCCTCTAGTTCTGAGCA+GGG - chr7_4:55091600-55091619 Msa1163730:intron 50.0%
TGAACCCTGCTCAGAACTAG+AGG + chr7_4:55091607-55091626 None:intergenic 50.0%
! GTTCTGAGCAGGGTTCAAGT+TGG - chr7_4:55091610-55091629 Msa1163730:intron 50.0%
!! TCAAGTTGGGCAGTTGAGGT+AGG - chr7_4:55091624-55091643 Msa1163730:CDS 50.0%
! CAAGTTGGGCAGTTGAGGTA+GGG - chr7_4:55091625-55091644 Msa1163730:CDS 50.0%
AAGTTGGGCAGTTGAGGTAG+GGG - chr7_4:55091626-55091645 Msa1163730:CDS 50.0%
!! AGCTTTTGTTGGTGGGGTGG+TGG - chr7_4:55086435-55086454 Msa1163730:intron 55.0%
!! GCTTTTGTTGGTGGGGTGGT+GGG - chr7_4:55086436-55086455 Msa1163730:intron 55.0%
!!! GTGGGGTGGTGGGAATTTTG+TGG - chr7_4:55086446-55086465 Msa1163730:intron 55.0%
!! CCAGCTCGCCGTTTTAATGG+CGG + chr7_4:55086522-55086541 None:intergenic 55.0%
CGCCATTAAAACGGCGAGCT+GGG - chr7_4:55086520-55086539 Msa1163730:CDS 55.0%
TAAAACGGCGAGCTGGGTTG+CGG - chr7_4:55086526-55086545 Msa1163730:CDS 55.0%
GGAGGAAGCAAGCTGGAAGA+GGG - chr7_4:55086547-55086566 Msa1163730:CDS 55.0%
GCTGGAAGAGGGTCTTACAG+AGG - chr7_4:55086558-55086577 Msa1163730:intron 55.0%
GTTGGGCAGGTAGCTGTTAC+TGG - chr7_4:55087699-55087718 Msa1163730:CDS 55.0%
CCAAGCTGAACAACGCCTAG+GGG + chr7_4:55088550-55088569 None:intergenic 55.0%
GCCAAGCTGAACAACGCCTA+GGG + chr7_4:55088551-55088570 None:intergenic 55.0%
AGCCAAGCTGAACAACGCCT+AGG + chr7_4:55088552-55088571 None:intergenic 55.0%
! TTTTTGCCACTCGCTGCTGC+AGG - chr7_4:55089382-55089401 Msa1163730:intron 55.0%
AGCTTCTTCGTACACGGACC+TGG - chr7_4:55089527-55089546 Msa1163730:intron 55.0%
CCACACTCCCTCGCATTTAC+AGG + chr7_4:55090050-55090069 None:intergenic 55.0%
CCTGTAAATGCGAGGGAGTG+TGG - chr7_4:55090047-55090066 Msa1163730:intron 55.0%
! GTAAATGCGAGGGAGTGTGG+AGG - chr7_4:55090050-55090069 Msa1163730:intron 55.0%
! AAATGCGAGGGAGTGTGGAG+GGG - chr7_4:55090052-55090071 Msa1163730:intron 55.0%
TCTACAACTTTCCCCAGGCC+TGG + chr7_4:55090660-55090679 None:intergenic 55.0%
CGAGGTCTACAACTTTCCCC+AGG + chr7_4:55090665-55090684 None:intergenic 55.0%
!! GGGTTCAAGTTGGGCAGTTG+AGG - chr7_4:55091620-55091639 Msa1163730:CDS 55.0%
AGTTGGGCAGTTGAGGTAGG+GGG - chr7_4:55091627-55091646 Msa1163730:CDS 55.0%
GTACGCGTGAGTATGACCTG+TGG - chr7_4:55091714-55091733 Msa1163730:five_prime_UTR 55.0%
CCGCCATTAAAACGGCGAGC+TGG - chr7_4:55086519-55086538 Msa1163730:CDS 60.0%
CGGAGGAAGCAAGCTGGAAG+AGG - chr7_4:55086546-55086565 Msa1163730:CDS 60.0%
! CCCCTAGGCGTTGTTCAGCT+TGG - chr7_4:55088547-55088566 Msa1163730:CDS 60.0%
CATTCACCTGCAGCAGCGAG+TGG + chr7_4:55089391-55089410 None:intergenic 60.0%
! CGCCCCTTCAATGTTCTGGG+AGG - chr7_4:55089874-55089893 Msa1163730:CDS 60.0%
! AATGCGAGGGAGTGTGGAGG+GGG - chr7_4:55090053-55090072 Msa1163730:intron 60.0%
GTAGACCTCGGCCAAGAGAC+AGG - chr7_4:55090675-55090694 Msa1163730:CDS 60.0%
AGTTGCCTGTCTCTTGGCCG+AGG + chr7_4:55090683-55090702 None:intergenic 60.0%
GGGTTGCGGAGGAAGCAAGC+TGG - chr7_4:55086540-55086559 Msa1163730:CDS 65.0%
GAGTGTGGAGGGGGCAGTAG+TGG - chr7_4:55090062-55090081 Msa1163730:intron 65.0%
AGCAAGAAGAGGGCCAGGCC+TGG - chr7_4:55090644-55090663 Msa1163730:intron 65.0%
GCAAGAAGAGGGCCAGGCCT+GGG - chr7_4:55090645-55090664 Msa1163730:intron 65.0%
CAAGAAGAGGGCCAGGCCTG+GGG - chr7_4:55090646-55090665 Msa1163730:intron 65.0%
AACGGCGAGCTGGGTTGCGG+AGG - chr7_4:55086529-55086548 Msa1163730:CDS 70.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 55085530 55092917 55085530 ID=Msa1163730;Name=Msa1163730
chr7_4 mRNA 55085530 55092917 55085530 ID=Msa1163730-mRNA-1;Parent=Msa1163730;Name=Msa1163730-mRNA-1;_AED=0.08;_eAED=0.08;_QI=1208|0.88|1|1|1|1|10|398|625
chr7_4 exon 55085530 55086017 55085530 ID=Msa1163730-mRNA-1:exon:16114;Parent=Msa1163730-mRNA-1
chr7_4 exon 55086451 55086576 55086451 ID=Msa1163730-mRNA-1:exon:16113;Parent=Msa1163730-mRNA-1
chr7_4 exon 55086734 55086874 55086734 ID=Msa1163730-mRNA-1:exon:16112;Parent=Msa1163730-mRNA-1
chr7_4 exon 55087490 55087597 55087490 ID=Msa1163730-mRNA-1:exon:16111;Parent=Msa1163730-mRNA-1
chr7_4 exon 55087693 55088649 55087693 ID=Msa1163730-mRNA-1:exon:16110;Parent=Msa1163730-mRNA-1
chr7_4 exon 55089865 55089924 55089865 ID=Msa1163730-mRNA-1:exon:16109;Parent=Msa1163730-mRNA-1
chr7_4 exon 55090483 55090524 55090483 ID=Msa1163730-mRNA-1:exon:16108;Parent=Msa1163730-mRNA-1
chr7_4 exon 55090665 55090752 55090665 ID=Msa1163730-mRNA-1:exon:16107;Parent=Msa1163730-mRNA-1
chr7_4 exon 55090833 55091003 55090833 ID=Msa1163730-mRNA-1:exon:16106;Parent=Msa1163730-mRNA-1
chr7_4 exon 55091615 55092917 55091615 ID=Msa1163730-mRNA-1:exon:16105;Parent=Msa1163730-mRNA-1
chr7_4 five_prime_UTR 55091710 55092917 55091710 ID=Msa1163730-mRNA-1:five_prime_utr;Parent=Msa1163730-mRNA-1
chr7_4 CDS 55091615 55091709 55091615 ID=Msa1163730-mRNA-1:cds;Parent=Msa1163730-mRNA-1
chr7_4 CDS 55090833 55091003 55090833 ID=Msa1163730-mRNA-1:cds;Parent=Msa1163730-mRNA-1
chr7_4 CDS 55090665 55090752 55090665 ID=Msa1163730-mRNA-1:cds;Parent=Msa1163730-mRNA-1
chr7_4 CDS 55090483 55090524 55090483 ID=Msa1163730-mRNA-1:cds;Parent=Msa1163730-mRNA-1
chr7_4 CDS 55089865 55089924 55089865 ID=Msa1163730-mRNA-1:cds;Parent=Msa1163730-mRNA-1
chr7_4 CDS 55087693 55088649 55087693 ID=Msa1163730-mRNA-1:cds;Parent=Msa1163730-mRNA-1
chr7_4 CDS 55087490 55087597 55087490 ID=Msa1163730-mRNA-1:cds;Parent=Msa1163730-mRNA-1
chr7_4 CDS 55086734 55086874 55086734 ID=Msa1163730-mRNA-1:cds;Parent=Msa1163730-mRNA-1
chr7_4 CDS 55086451 55086576 55086451 ID=Msa1163730-mRNA-1:cds;Parent=Msa1163730-mRNA-1
chr7_4 CDS 55085928 55086017 55085928 ID=Msa1163730-mRNA-1:cds;Parent=Msa1163730-mRNA-1
chr7_4 three_prime_UTR 55085530 55085927 55085530 ID=Msa1163730-mRNA-1:three_prime_utr;Parent=Msa1163730-mRNA-1
Gene Sequence

>Msa1163730

ATGGTTAACAACTTGCATCAACTACTTAGAAGTCTTTGTTTCAATACTCAGTGGAATTATGCAATCTTTTGGAAGCTCAAACATTGTGCTCCAATGATCTTGACATTGGAGGATGCTTACTATGACAATTCAGATTATTTTGACGCTTCAGAAAATAAGTACTGTCAGAAGACCTTAGAACAGATTGAGGGTGGGAAATTTTCACATGACGCTTTGGGGTTAGCTGTTGCAAAGATGTCATATAATGCATATCCATTAGGGCAAGGTATTGTTGGGCAGGTAGCTGTTACTGGAAAGCATCAGTGGATCTGTGCAGATAATAATCAAGTTACAAGTTCTGGCTTGTCTTTTGAGTTTGCTGATGGGTGGCAATCTCAATTTTCTGCTGGAATTAGGACAATTGTTGTTGTGTCTGTAGTTCCCCTAGGCGTTGTTCAGCTTGGCTCTCTAATAAAACCGGATGTCTTGAAGGAAAAATCATCTTCGGATATTATGCCTGCGTGCATGAGGAATAAAACAGTGGATGTTTTGACGCCCCTTCAATGTTCTGGGAGGAACAACACAACTCATTCTGCTTATTGGGAAATGGGTGATAATATGGTCAAGCATGAAGGGGCCGAGCTCTATAGTGATGTGAGTCCCATTTTGCTTCAGTCAATGTCTGATATGATTAATGTGGAGCATCAGGAATTTGGAGAGATAAGACCTGTAAATGCGAGGGAGTGTGGAGGGGGCAGTAGTGGCTGCAAAAATATGATATTGGACTCTGAACAAAATCGCTCGTCATTTTTAAACAATTCTGCTATAAATAATGTTGGCGTCTATGATTCAATACACCAATCGGAAAAGGATTCCTCCTATACACCGTTGAAGTTTCCAGCTGGATGTGAACTACTTGAAGCACTTGGACCATCTTCTTTGAAAGGGAGTAAATATTTTGATTGGTTGGCTCAGGTTAATCAAGATATGAAAATTGCGGATGTGCCGGATGTGTTTAACACTAGTCAGTTGACTTCTGAATCTCATCCAGAGCATCTTTTGGAAGCAATGGTGGCCAACATCTGTCACAGTAGTAATAATGATGTTAATAGTGGATTATCATTTTGTAGATCAATGCAATCTGCATTGAGTTCTGGAAAAACAACCGATGCTTCTATTCAAGATGTCCACACTATAGACCATCCTTCTCTTGTCAGAGAGGACAAAAACCATTGTTTGAGTTCATCATCTAAAGTTGTTTCTTCTACATGTCCTAGTGCTTGTAGTGAACAATTTGAAAGATCTTCTGAACCATCTAAAAACAGCAAGAAGAGGGCCAGGCCTGGGGAAAGTTGTAGACCTCGGCCAAGAGACAGGCAACTGATCCAAGATCGAATTAAGGAGCTTAGAGAGTTGGTACCGAATGGAGCTAAGTGTAGTATTGATTCACTACTGGAGCGCTCGATAAAGCACATGCTCTTTCTGCAAAGCATAACTAAGCATGCTGACAAGCTAACTAAACTTGCTGATACTAAATCAAAGTTGCATCAAATGGAAACAGACATTCTTGGATCCTCTAGTTCTGAGCAGGGTTCAAGTTGGGCAGTTGAGGTAGGGGGTCATCTGAAAGTTCATTCAATATTAGTGGAGAATCTTAGCAACAACAGACAGATGCTTATTGAGACGCTATGTGAAGAGAGCAGCCATTTTCTTGAAATAGCAGAAGCTGTAAGAAGCTTGGGGCTTACAATTTTGAAGGGTGCAACAAAAGCTCGTGATAAGAAGATATCGATATGCTTTATCGTTGAGGGTGAAAACAACAGAAATGTACACAGATTGGACATCTTGTGGCCACTTGTTCAGATACTACAATCCAAGAGCGTTGTGTATCAACAGTAA

Protein sequence

>Msa1163730

MVNNLHQLLRSLCFNTQWNYAIFWKLKHCAPMILTLEDAYYDNSDYFDASENKYCQKTLEQIEGGKFSHDALGLAVAKMSYNAYPLGQGIVGQVAVTGKHQWICADNNQVTSSGLSFEFADGWQSQFSAGIRTIVVVSVVPLGVVQLGSLIKPDVLKEKSSSDIMPACMRNKTVDVLTPLQCSGRNNTTHSAYWEMGDNMVKHEGAELYSDVSPILLQSMSDMINVEHQEFGEIRPVNARECGGGSSGCKNMILDSEQNRSSFLNNSAINNVGVYDSIHQSEKDSSYTPLKFPAGCELLEALGPSSLKGSKYFDWLAQVNQDMKIADVPDVFNTSQLTSESHPEHLLEAMVANICHSSNNDVNSGLSFCRSMQSALSSGKTTDASIQDVHTIDHPSLVREDKNHCLSSSSKVVSSTCPSACSEQFERSSEPSKNSKKRARPGESCRPRPRDRQLIQDRIKELRELVPNGAKCSIDSLLERSIKHMLFLQSITKHADKLTKLADTKSKLHQMETDILGSSSSEQGSSWAVEVGGHLKVHSILVENLSNNRQMLIETLCEESSHFLEIAEAVRSLGLTILKGATKARDKKISICFIVEGENNRNVHRLDILWPLVQILQSKSVVYQQ*