Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
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Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0017510 | Msa1169000 | 0.852069 | 5.878331e-61 | -8.615850e-47 |
Msa0089630 | Msa1169000 | 0.812121 | 4.972473e-51 | -8.615850e-47 |
Msa0101810 | Msa1169000 | -0.801920 | 7.172042e-49 | -8.615850e-47 |
Msa0608620 | Msa1169000 | 0.801210 | 1.002427e-48 | -8.615850e-47 |
Msa0657970 | Msa1169000 | 0.839895 | 1.205343e-57 | -8.615850e-47 |
Msa0661650 | Msa1169000 | 0.801725 | 7.861375e-49 | -8.615850e-47 |
Msa0661870 | Msa1169000 | 0.831292 | 1.812865e-55 | -8.615850e-47 |
Msa0669320 | Msa1169000 | 0.814054 | 1.872683e-51 | -8.615850e-47 |
Msa0669440 | Msa1169000 | 0.802623 | 5.139515e-49 | -8.615850e-47 |
Msa0673450 | Msa1169000 | 0.800734 | 1.254370e-48 | -8.615850e-47 |
Msa0673460 | Msa1169000 | 0.810977 | 8.813303e-51 | -8.615850e-47 |
Msa0696640 | Msa1169000 | 0.811083 | 8.358064e-51 | -8.615850e-47 |
Msa0710060 | Msa1169000 | 0.805109 | 1.564235e-49 | -8.615850e-47 |
Msa0743720 | Msa1169000 | 0.819839 | 9.405505e-53 | -8.615850e-47 |
Msa0769390 | Msa1169000 | 0.823999 | 1.023589e-53 | -8.615850e-47 |
Msa0789690 | Msa1169000 | 0.814886 | 1.226304e-51 | -8.615850e-47 |
Msa0806090 | Msa1169000 | 0.817543 | 3.123342e-52 | -8.615850e-47 |
Msa0832370 | Msa1169000 | 0.818578 | 1.821600e-52 | -8.615850e-47 |
Msa0139060 | Msa1169000 | 0.805992 | 1.021212e-49 | -8.615850e-47 |
Msa0153910 | Msa1169000 | 0.810466 | 1.136973e-50 | -8.615850e-47 |
Msa0157290 | Msa1169000 | 0.852319 | 4.991286e-61 | -8.615850e-47 |
Msa0173990 | Msa1169000 | 0.800372 | 1.486596e-48 | -8.615850e-47 |
Msa0200260 | Msa1169000 | 0.829907 | 3.958475e-55 | -8.615850e-47 |
Msa0216910 | Msa1169000 | 0.803076 | 4.142888e-49 | -8.615850e-47 |
Msa0220580 | Msa1169000 | 0.805441 | 1.332834e-49 | -8.615850e-47 |
Msa0220740 | Msa1169000 | 0.825563 | 4.378341e-54 | -8.615850e-47 |
Msa0379640 | Msa1169000 | 0.804303 | 2.304496e-49 | -8.615850e-47 |
Msa0380740 | Msa1169000 | 0.823180 | 1.591643e-53 | -8.615850e-47 |
Msa0388960 | Msa1169000 | 0.801105 | 1.053294e-48 | -8.615850e-47 |
Msa0395790 | Msa1169000 | 0.804149 | 2.480996e-49 | -8.615850e-47 |
Msa0398710 | Msa1169000 | 0.805465 | 1.317356e-49 | -8.615850e-47 |
Msa0398790 | Msa1169000 | 0.810177 | 1.312238e-50 | -8.615850e-47 |
Msa0402290 | Msa1169000 | 0.807378 | 5.205173e-50 | -8.615850e-47 |
Msa0406120 | Msa1169000 | 0.806760 | 7.035508e-50 | -8.615850e-47 |
Msa0417100 | Msa1169000 | 0.810445 | 1.148774e-50 | -8.615850e-47 |
Msa0426640 | Msa1169000 | 0.807646 | 4.565528e-50 | -8.615850e-47 |
Msa0432300 | Msa1169000 | 0.801549 | 8.543687e-49 | -8.615850e-47 |
Msa0437990 | Msa1169000 | 0.938698 | 4.373401e-99 | -8.615850e-47 |
Msa0443260 | Msa1169000 | 0.820979 | 5.152187e-53 | -8.615850e-47 |
Msa0466390 | Msa1169000 | 0.823666 | 1.224726e-53 | -8.615850e-47 |
Msa0480980 | Msa1169000 | 0.814219 | 1.722110e-51 | -8.615850e-47 |
Msa0993290 | Msa1169000 | 0.802357 | 5.830460e-49 | -8.615850e-47 |
Msa0993600 | Msa1169000 | 0.810379 | 1.187207e-50 | -8.615850e-47 |
Msa0995270 | Msa1169000 | 0.811352 | 7.309174e-51 | -8.615850e-47 |
Msa1014540 | Msa1169000 | 0.842073 | 3.230409e-58 | -8.615850e-47 |
Msa1024240 | Msa1169000 | 0.814142 | 1.790895e-51 | -8.615850e-47 |
Msa1030970 | Msa1169000 | 0.824128 | 9.547053e-54 | -8.615850e-47 |
Msa1045200 | Msa1169000 | 0.803776 | 2.965732e-49 | -8.615850e-47 |
Msa1070010 | Msa1169000 | 0.813230 | 2.843453e-51 | -8.615850e-47 |
Msa1075220 | Msa1169000 | -0.816295 | 5.952898e-52 | -8.615850e-47 |
Msa1075540 | Msa1169000 | 0.816509 | 5.329988e-52 | -8.615850e-47 |
Msa1079180 | Msa1169000 | 0.935541 | 7.209108e-97 | -8.615850e-47 |
Msa1082500 | Msa1169000 | 0.818080 | 2.362481e-52 | -8.615850e-47 |
Msa0243100 | Msa1169000 | 0.825562 | 4.381439e-54 | -8.615850e-47 |
Msa0261340 | Msa1169000 | 0.810497 | 1.119424e-50 | -8.615850e-47 |
Msa0284420 | Msa1169000 | 0.801353 | 9.371204e-49 | -8.615850e-47 |
Msa0287650 | Msa1169000 | 0.802662 | 5.044079e-49 | -8.615850e-47 |
Msa0345970 | Msa1169000 | 0.805190 | 1.504254e-49 | -8.615850e-47 |
Msa1124050 | Msa1169000 | 0.821641 | 3.624787e-53 | -8.615850e-47 |
Msa1162550 | Msa1169000 | -0.819483 | 1.134500e-52 | -8.615850e-47 |
Msa1169000 | Msa1169090 | 0.870245 | 1.687778e-66 | -8.615850e-47 |
Msa1169000 | Msa1186060 | 0.818347 | 2.055614e-52 | -8.615850e-47 |
Msa1169000 | Msa1190400 | 0.824203 | 9.167395e-54 | -8.615850e-47 |
Msa1169000 | Msa1205130 | 0.806125 | 9.574384e-50 | -8.615850e-47 |
Msa1169000 | Msa1226660 | 0.820486 | 6.687175e-53 | -8.615850e-47 |
Msa1169000 | Msa1228210 | 0.800810 | 1.210160e-48 | -8.615850e-47 |
Msa1169000 | Msa1242220 | 0.810811 | 9.572549e-51 | -8.615850e-47 |
Msa1169000 | Msa1244250 | 0.828781 | 7.427400e-55 | -8.615850e-47 |
Msa1169000 | Msa1252140 | 0.823983 | 1.032152e-53 | -8.615850e-47 |
Msa1169000 | Msa1271290 | 0.825385 | 4.824556e-54 | -8.615850e-47 |
Msa1169000 | Msa1271300 | 0.807896 | 4.040880e-50 | -8.615850e-47 |
Msa1169000 | Msa1278840 | 0.805061 | 1.601186e-49 | -8.615850e-47 |
Msa1169000 | Msa1283860 | 0.825999 | 3.450421e-54 | -8.615850e-47 |
Msa1169000 | Msa1284680 | 0.818977 | 1.478776e-52 | -8.615850e-47 |
Msa1169000 | Msa1300490 | 0.801415 | 9.103503e-49 | -8.615850e-47 |
Msa1169000 | Msa1308380 | 0.803294 | 3.733918e-49 | -8.615850e-47 |
Msa1169000 | Msa1314170 | 0.802057 | 6.721209e-49 | -8.615850e-47 |
Msa1169000 | Msa1314340 | 0.803684 | 3.099233e-49 | -8.615850e-47 |
Msa1169000 | Msa1322890 | 0.808357 | 3.222499e-50 | -8.615850e-47 |
Msa1169000 | Msa1324500 | 0.824641 | 7.229493e-54 | -8.615850e-47 |
Msa1169000 | Msa1324780 | 0.833482 | 5.199980e-56 | -8.615850e-47 |
Msa1169000 | Msa1327680 | 0.812073 | 5.091797e-51 | -8.615850e-47 |
Msa1169000 | Msa1359040 | 0.823162 | 1.607169e-53 | -8.615850e-47 |
Msa1169000 | Msa1360060 | 0.813140 | 2.975581e-51 | -8.615850e-47 |
Msa1169000 | Msa1372760 | 0.819797 | 9.618810e-53 | -8.615850e-47 |
Msa1169000 | Msa1392260 | 0.812219 | 4.731851e-51 | -8.615850e-47 |
Msa1169000 | Msa1438250 | 0.841938 | 3.507607e-58 | -8.615850e-47 |
Msa1169000 | Msa1452240 | 0.802089 | 6.618160e-49 | -8.615850e-47 |
Msa1169000 | Msa1466540 | 0.814499 | 1.493780e-51 | -8.615850e-47 |
Msa0484780 | Msa1169000 | 0.804159 | 2.469181e-49 | -8.615850e-47 |
Msa0512900 | Msa1169000 | 0.816312 | 5.901837e-52 | -8.615850e-47 |
Msa0517110 | Msa1169000 | 0.812142 | 4.919428e-51 | -8.615850e-47 |
Msa0536220 | Msa1169000 | 0.814811 | 1.273669e-51 | -8.615850e-47 |
Msa0555020 | Msa1169000 | 0.807942 | 3.950662e-50 | -8.615850e-47 |
Msa0558640 | Msa1169000 | 0.808633 | 2.814359e-50 | -8.615850e-47 |
Msa0581760 | Msa1169000 | 0.804443 | 2.154874e-49 | -8.615850e-47 |
Msa0842650 | Msa1169000 | 0.807896 | 4.039960e-50 | -8.615850e-47 |
Msa0857680 | Msa1169000 | 0.801697 | 7.967862e-49 | -8.615850e-47 |
Msa0880140 | Msa1169000 | 0.854684 | 1.044499e-61 | -8.615850e-47 |
Msa0885280 | Msa1169000 | 0.852866 | 3.484775e-61 | -8.615850e-47 |
Msa0885290 | Msa1169000 | 0.806657 | 7.396009e-50 | -8.615850e-47 |
Msa0907070 | Msa1169000 | 0.809859 | 1.536233e-50 | -8.615850e-47 |
Msa0909120 | Msa1169000 | 0.818993 | 1.466722e-52 | -8.615850e-47 |
Msa0922410 | Msa1169000 | 0.808175 | 3.523284e-50 | -8.615850e-47 |
Msa0922720 | Msa1169000 | 0.802405 | 5.699923e-49 | -8.615850e-47 |
Msa0942200 | Msa1169000 | 0.809345 | 1.980859e-50 | -8.615850e-47 |
Msa0969520 | Msa1169000 | 0.814752 | 1.312884e-51 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 29 sgRNAs with CRISPR-Local
Find 45 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTGCAGGTCAAGGCTGATTT+TGG | 0.138857 | 7_4:+61915010 | Msa1169000:intron |
AACCCGCATTTCTAACTTAA+TGG | 0.155002 | 7_4:-61915084 | None:intergenic |
TACTGGTGATGTTTCTAAAA+AGG | 0.173626 | 7_4:+61914785 | Msa1169000:five_prime_UTR |
TCGGATTAACCAACACAATT+AGG | 0.275265 | 7_4:+61914719 | Msa1169000:five_prime_UTR |
TGAGTTGAGAAGGTTGAATA+AGG | 0.323601 | 7_4:+61914518 | Msa1169000:five_prime_UTR |
CACTTGTAGGCTCTCTTCTA+TGG | 0.338739 | 7_4:+61914566 | Msa1169000:five_prime_UTR |
ATTTCTAACTTAATGGTACT+TGG | 0.426986 | 7_4:-61915077 | None:intergenic |
TTAACTTAAATCATACTGAT+AGG | 0.430639 | 7_4:+61914894 | Msa1169000:CDS |
AACCAACACAATTAGGCTCT+TGG | 0.438251 | 7_4:+61914726 | Msa1169000:five_prime_UTR |
GATAAGAGGAAGCGGTGAAG+GGG | 0.453973 | 7_4:+61914451 | None:intergenic |
TACCATTAAGTTAGAAATGC+GGG | 0.455867 | 7_4:+61915082 | Msa1169000:exon |
TTGTAATAGAAGATATGAAT+AGG | 0.461497 | 7_4:+61914690 | Msa1169000:five_prime_UTR |
AGCCTTGCTCTGCAAATACT+TGG | 0.488191 | 7_4:-61915053 | None:intergenic |
AGATAAGAGGAAGCGGTGAA+GGG | 0.491215 | 7_4:+61914450 | None:intergenic |
AGATATGAATAGGCTCTCTT+CGG | 0.510356 | 7_4:+61914700 | Msa1169000:five_prime_UTR |
AGAAGAGGAACCTCACTTGT+AGG | 0.517175 | 7_4:+61914553 | Msa1169000:five_prime_UTR |
GTCCAAGTATTTGCAGAGCA+AGG | 0.527011 | 7_4:+61915051 | Msa1169000:CDS |
AGCCAAGAGCCTAATTGTGT+TGG | 0.531992 | 7_4:-61914728 | None:intergenic |
TTACTGAGTTGGACTTAAAG+TGG | 0.536061 | 7_4:+61914838 | Msa1169000:five_prime_UTR |
ATAAGAGGAAGCGGTGAAGG+GGG | 0.538898 | 7_4:+61914452 | None:intergenic |
TTGAAGTTGTTGAGTTGAGA+AGG | 0.559117 | 7_4:+61914508 | Msa1169000:five_prime_UTR |
TGTATGCTATCTTACTGAGT+TGG | 0.580470 | 7_4:+61914827 | Msa1169000:five_prime_UTR |
AGGAGCTGCATATGTAGAAG+AGG | 0.591272 | 7_4:+61914538 | Msa1169000:five_prime_UTR |
ATGATTTAAGTTAATAACCA+TGG | 0.599391 | 7_4:-61914885 | None:intergenic |
GTACCATTAAGTTAGAAATG+CGG | 0.611734 | 7_4:+61915081 | Msa1169000:exon |
TCATACTGATAGGACAGTGA+TGG | 0.631868 | 7_4:+61914904 | Msa1169000:CDS |
TAGAAGAGAGCCTACAAGTG+AGG | 0.633933 | 7_4:-61914563 | None:intergenic |
TAGTTGTGCCTGCCAAAACA+CGG | 0.641537 | 7_4:-61914764 | None:intergenic |
TAACTTGCTGAGAAATACCA+TGG | 0.684621 | 7_4:+61914868 | Msa1169000:exon |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTGTAATAGAAGATATGAAT+AGG | + | chr7_4:61914690-61914709 | Msa1169000:five_prime_UTR | 20.0% |
!!! | ATGATTTAAGTTAATAACCA+TGG | - | chr7_4:61914888-61914907 | None:intergenic | 20.0% |
!! | TTAACTTAAATCATACTGAT+AGG | + | chr7_4:61914894-61914913 | Msa1169000:CDS | 20.0% |
!! | TGACATAATTTCTTTTCTCA+TGG | + | chr7_4:61914658-61914677 | Msa1169000:five_prime_UTR | 25.0% |
!! | GACATAATTTCTTTTCTCAT+GGG | + | chr7_4:61914659-61914678 | Msa1169000:five_prime_UTR | 25.0% |
! | ATTTCTAACTTAATGGTACT+TGG | - | chr7_4:61915080-61915099 | None:intergenic | 25.0% |
! | TACTGGTGATGTTTCTAAAA+AGG | + | chr7_4:61914785-61914804 | Msa1169000:five_prime_UTR | 30.0% |
! | ACTGGTGATGTTTCTAAAAA+GGG | + | chr7_4:61914786-61914805 | Msa1169000:five_prime_UTR | 30.0% |
!! | AGTACTTGATAACCTCATTT+TGG | - | chr7_4:61914963-61914982 | None:intergenic | 30.0% |
GTACCATTAAGTTAGAAATG+CGG | + | chr7_4:61915081-61915100 | Msa1169000:exon | 30.0% | |
TACCATTAAGTTAGAAATGC+GGG | + | chr7_4:61915082-61915101 | Msa1169000:exon | 30.0% | |
TAAAAAGTAAACAAGCAGCA+AGG | - | chr7_4:61915122-61915141 | None:intergenic | 30.0% | |
!!! | TTGCTGCTTGTTTACTTTTT+AGG | + | chr7_4:61915121-61915140 | Msa1169000:three_prime_UTR | 30.0% |
!! | TTGAAGTTGTTGAGTTGAGA+AGG | + | chr7_4:61914508-61914527 | Msa1169000:five_prime_UTR | 35.0% |
! | TGAGTTGAGAAGGTTGAATA+AGG | + | chr7_4:61914518-61914537 | Msa1169000:five_prime_UTR | 35.0% |
AGATATGAATAGGCTCTCTT+CGG | + | chr7_4:61914700-61914719 | Msa1169000:five_prime_UTR | 35.0% | |
TCGGATTAACCAACACAATT+AGG | + | chr7_4:61914719-61914738 | Msa1169000:five_prime_UTR | 35.0% | |
!! | TTTTGATTGATGCCGTGTTT+TGG | + | chr7_4:61914752-61914771 | Msa1169000:five_prime_UTR | 35.0% |
! | ATGTTTCTAAAAAGGGTCGA+TGG | + | chr7_4:61914793-61914812 | Msa1169000:five_prime_UTR | 35.0% |
TGTATGCTATCTTACTGAGT+TGG | + | chr7_4:61914827-61914846 | Msa1169000:five_prime_UTR | 35.0% | |
! | TTACTGAGTTGGACTTAAAG+TGG | + | chr7_4:61914838-61914857 | Msa1169000:five_prime_UTR | 35.0% |
!! | TAACTTGCTGAGAAATACCA+TGG | + | chr7_4:61914868-61914887 | Msa1169000:exon | 35.0% |
TTTGGACAGAGTAAACTTCA+AGG | - | chr7_4:61914945-61914964 | None:intergenic | 35.0% | |
AGTTTACTCTGTCCAAAATG+AGG | + | chr7_4:61914948-61914967 | Msa1169000:intron | 35.0% | |
AACCCGCATTTCTAACTTAA+TGG | - | chr7_4:61915087-61915106 | None:intergenic | 35.0% | |
AACCAACACAATTAGGCTCT+TGG | + | chr7_4:61914726-61914745 | Msa1169000:five_prime_UTR | 40.0% | |
TCATACTGATAGGACAGTGA+TGG | + | chr7_4:61914904-61914923 | Msa1169000:CDS | 40.0% | |
CAGTAGAGGATAGGCAAATT+GGG | - | chr7_4:61914993-61915012 | None:intergenic | 40.0% | |
AGGAGCTGCATATGTAGAAG+AGG | + | chr7_4:61914538-61914557 | Msa1169000:five_prime_UTR | 45.0% | |
AGAAGAGGAACCTCACTTGT+AGG | + | chr7_4:61914553-61914572 | Msa1169000:five_prime_UTR | 45.0% | |
TAGAAGAGAGCCTACAAGTG+AGG | - | chr7_4:61914566-61914585 | None:intergenic | 45.0% | |
CACTTGTAGGCTCTCTTCTA+TGG | + | chr7_4:61914566-61914585 | Msa1169000:five_prime_UTR | 45.0% | |
AGCCAAGAGCCTAATTGTGT+TGG | - | chr7_4:61914731-61914750 | None:intergenic | 45.0% | |
TAGTTGTGCCTGCCAAAACA+CGG | - | chr7_4:61914767-61914786 | None:intergenic | 45.0% | |
GCAGTAGAGGATAGGCAAAT+TGG | - | chr7_4:61914994-61915013 | None:intergenic | 45.0% | |
ATTTGCCTATCCTCTACTGC+AGG | + | chr7_4:61914994-61915013 | Msa1169000:intron | 45.0% | |
!! | TGCAGGTCAAGGCTGATTTT+GGG | + | chr7_4:61915011-61915030 | Msa1169000:intron | 45.0% |
GTCCAAGTATTTGCAGAGCA+AGG | + | chr7_4:61915051-61915070 | Msa1169000:CDS | 45.0% | |
AGCCTTGCTCTGCAAATACT+TGG | - | chr7_4:61915056-61915075 | None:intergenic | 45.0% | |
!!! | GATTGATGCCGTGTTTTGGC+AGG | + | chr7_4:61914756-61914775 | Msa1169000:five_prime_UTR | 50.0% |
!! | GTTTTGGCAGGCACAACTAC+TGG | + | chr7_4:61914768-61914787 | Msa1169000:five_prime_UTR | 50.0% |
CTTGACCTGCAGTAGAGGAT+AGG | - | chr7_4:61915002-61915021 | None:intergenic | 50.0% | |
CTATCCTCTACTGCAGGTCA+AGG | + | chr7_4:61915000-61915019 | Msa1169000:intron | 50.0% | |
!! | CTGCAGGTCAAGGCTGATTT+TGG | + | chr7_4:61915010-61915029 | Msa1169000:intron | 50.0% |
TCAGCCTTGACCTGCAGTAG+AGG | - | chr7_4:61915007-61915026 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7_4 | gene | 61914465 | 61915164 | 61914465 | ID=Msa1169000;Name=Msa1169000 |
chr7_4 | mRNA | 61914465 | 61915164 | 61914465 | ID=Msa1169000-mRNA-1;Parent=Msa1169000;Name=Msa1169000-mRNA-1;_AED=0.28;_eAED=0.28;_QI=422|1|1|1|1|1|2|74|37 |
chr7_4 | exon | 61914465 | 61914925 | 61914465 | ID=Msa1169000-mRNA-1:exon:19540;Parent=Msa1169000-mRNA-1 |
chr7_4 | exon | 61915016 | 61915164 | 61915016 | ID=Msa1169000-mRNA-1:exon:19541;Parent=Msa1169000-mRNA-1 |
chr7_4 | five_prime_UTR | 61914465 | 61914886 | 61914465 | ID=Msa1169000-mRNA-1:five_prime_utr;Parent=Msa1169000-mRNA-1 |
chr7_4 | CDS | 61914887 | 61914925 | 61914887 | ID=Msa1169000-mRNA-1:cds;Parent=Msa1169000-mRNA-1 |
chr7_4 | CDS | 61915016 | 61915090 | 61915016 | ID=Msa1169000-mRNA-1:cds;Parent=Msa1169000-mRNA-1 |
chr7_4 | three_prime_UTR | 61915091 | 61915164 | 61915091 | ID=Msa1169000-mRNA-1:three_prime_utr;Parent=Msa1169000-mRNA-1 |
Gene Sequence |
Protein sequence |