Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0875990 | XP_013451289.1 | 79.672 | 305 | 12 | 2 | 1 | 255 | 1 | 305 | 6.69e-168 | 476 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0875990 | A0A072U6F4 | 79.672 | 305 | 12 | 2 | 1 | 255 | 1 | 305 | 3.20e-168 | 476 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0009210 | Msa0875990 | 0.800003 | 1.767279e-48 | -8.615850e-47 |
| Msa0605670 | Msa0875990 | 0.839863 | 1.228394e-57 | -8.615850e-47 |
| Msa0623760 | Msa0875990 | 0.818010 | 2.450393e-52 | -8.615850e-47 |
| Msa0640880 | Msa0875990 | 0.801993 | 6.928569e-49 | -8.615850e-47 |
| Msa0643800 | Msa0875990 | 0.842725 | 2.170437e-58 | -8.615850e-47 |
| Msa0646710 | Msa0875990 | 0.823908 | 1.075065e-53 | -8.615850e-47 |
| Msa0683650 | Msa0875990 | 0.847555 | 1.074079e-59 | -8.615850e-47 |
| Msa0712070 | Msa0875990 | 0.803723 | 3.042663e-49 | -8.615850e-47 |
| Msa0734430 | Msa0875990 | 0.803366 | 3.607412e-49 | -8.615850e-47 |
| Msa0786090 | Msa0875990 | 0.806629 | 7.496011e-50 | -8.615850e-47 |
| Msa0815340 | Msa0875990 | 0.822448 | 2.355914e-53 | -8.615850e-47 |
| Msa0823300 | Msa0875990 | 0.803205 | 3.895703e-49 | -8.615850e-47 |
| Msa0382290 | Msa0875990 | 0.830082 | 3.586915e-55 | -8.615850e-47 |
| Msa0415460 | Msa0875990 | 0.822053 | 2.909314e-53 | -8.615850e-47 |
| Msa0418480 | Msa0875990 | 0.817258 | 3.619424e-52 | -8.615850e-47 |
| Msa0436310 | Msa0875990 | 0.808086 | 3.680227e-50 | -8.615850e-47 |
| Msa0450860 | Msa0875990 | 0.821603 | 3.698185e-53 | -8.615850e-47 |
| Msa0465860 | Msa0875990 | 0.835627 | 1.503162e-56 | -8.615850e-47 |
| Msa0475130 | Msa0875990 | 0.806829 | 6.803603e-50 | -8.615850e-47 |
| Msa0482580 | Msa0875990 | 0.806567 | 7.725381e-50 | -8.615850e-47 |
| Msa0247310 | Msa0875990 | 0.816440 | 5.522890e-52 | -8.615850e-47 |
| Msa0285710 | Msa0875990 | 0.811820 | 5.782577e-51 | -8.615850e-47 |
| Msa0301800 | Msa0875990 | 0.804490 | 2.107255e-49 | -8.615850e-47 |
| Msa0334780 | Msa0875990 | 0.814918 | 1.206067e-51 | -8.615850e-47 |
| Msa0358230 | Msa0875990 | 0.830396 | 3.006731e-55 | -8.615850e-47 |
| Msa0489620 | Msa0875990 | 0.815756 | 7.851662e-52 | -8.615850e-47 |
| Msa0510230 | Msa0875990 | 0.840471 | 8.521672e-58 | -8.615850e-47 |
| Msa0517300 | Msa0875990 | 0.814871 | 1.235141e-51 | -8.615850e-47 |
| Msa0520730 | Msa0875990 | 0.824245 | 8.961986e-54 | -8.615850e-47 |
| Msa0547780 | Msa0875990 | 0.810067 | 1.386056e-50 | -8.615850e-47 |
| Msa0550280 | Msa0875990 | 0.833821 | 4.278197e-56 | -8.615850e-47 |
| Msa0602670 | Msa0875990 | 0.831147 | 1.968737e-55 | -8.615850e-47 |
| Msa0855560 | Msa0875990 | 0.803357 | 3.624001e-49 | -8.615850e-47 |
| Msa0875990 | Msa0941140 | 0.823607 | 1.264923e-53 | -8.615850e-47 |
| Msa0875990 | Msa0978260 | 0.911285 | 7.231428e-83 | -8.615850e-47 |
| Msa0875990 | Msa1022310 | 0.806794 | 6.918006e-50 | -8.615850e-47 |
| Msa0875990 | Msa1024140 | 0.809859 | 1.536511e-50 | -8.615850e-47 |
| Msa0875990 | Msa1045440 | 0.812383 | 4.357713e-51 | -8.615850e-47 |
| Msa0875990 | Msa1061180 | 0.809274 | 2.051455e-50 | -8.615850e-47 |
| Msa0875990 | Msa1067430 | 0.827873 | 1.230036e-54 | -8.615850e-47 |
| Msa0875990 | Msa1106760 | 0.817233 | 3.667911e-52 | -8.615850e-47 |
| Msa0875990 | Msa1138840 | 0.816120 | 6.512480e-52 | -8.615850e-47 |
| Msa0875990 | Msa1150170 | 0.822130 | 2.792901e-53 | -8.615850e-47 |
| Msa0875990 | Msa1173020 | 0.827304 | 1.684618e-54 | -8.615850e-47 |
| Msa0875990 | Msa1180410 | 0.816024 | 6.842461e-52 | -8.615850e-47 |
| Msa0875990 | Msa1183760 | 0.811936 | 5.456382e-51 | -8.615850e-47 |
| Msa0875990 | Msa1186210 | 0.806063 | 9.865232e-50 | -8.615850e-47 |
| Msa0875990 | Msa1207280 | 0.816444 | 5.513946e-52 | -8.615850e-47 |
| Msa0875990 | Msa1224140 | 0.808184 | 3.508079e-50 | -8.615850e-47 |
| Msa0875990 | Msa1232010 | 0.821964 | 3.050930e-53 | -8.615850e-47 |
| Msa0875990 | Msa1232860 | 0.803460 | 3.449008e-49 | -8.615850e-47 |
| Msa0875990 | Msa1257520 | 0.804453 | 2.144998e-49 | -8.615850e-47 |
| Msa0875990 | Msa1261340 | 0.825618 | 4.248798e-54 | -8.615850e-47 |
| Msa0875990 | Msa1261360 | 0.817185 | 3.760169e-52 | -8.615850e-47 |
| Msa0875990 | Msa1261370 | 0.822694 | 2.065756e-53 | -8.615850e-47 |
| Msa0875990 | Msa1261400 | 0.810971 | 8.840208e-51 | -8.615850e-47 |
| Msa0875990 | Msa1274740 | 0.833639 | 4.751765e-56 | -8.615850e-47 |
| Msa0875990 | Msa1306540 | 0.805115 | 1.559832e-49 | -8.615850e-47 |
| Msa0875990 | Msa1312730 | 0.834116 | 3.608798e-56 | -8.615850e-47 |
| Msa0875990 | Msa1331900 | 0.801108 | 1.052063e-48 | -8.615850e-47 |
| Msa0875990 | Msa1336320 | 0.806988 | 6.295638e-50 | -8.615850e-47 |
| Msa0875990 | Msa1355860 | 0.809085 | 2.252470e-50 | -8.615850e-47 |
| Msa0875990 | Msa1367810 | 0.813666 | 2.279972e-51 | -8.615850e-47 |
| Msa0875990 | Msa1375400 | 0.820664 | 6.088203e-53 | -8.615850e-47 |
| Msa0875990 | Msa1415250 | 0.827000 | 1.991530e-54 | -8.615850e-47 |
| Msa0875990 | Msa1421810 | 0.814683 | 1.359991e-51 | -8.615850e-47 |
| Msa0875990 | Msa1424240 | 0.812904 | 3.351898e-51 | -8.615850e-47 |
| Msa0875990 | Msa1429390 | 0.822608 | 2.162717e-53 | -8.615850e-47 |
| Msa0875990 | Msa1432470 | 0.820318 | 7.306068e-53 | -8.615850e-47 |
| Msa0875990 | Msa1439680 | 0.802038 | 6.782216e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0875990 | MtrunA17_Chr6g0457141 | 79.672 | 305 | 12 | 2 | 1 | 255 | 1 | 305 | 6.16e-172 | 476 |
| Msa0875990 | MtrunA17_Chr7g0220871 | 51.148 | 305 | 84 | 8 | 6 | 251 | 4 | 302 | 6.66e-88 | 263 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0875990 | AT3G02500.2 | 56.954 | 151 | 50 | 4 | 15 | 164 | 3 | 139 | 1.97e-49 | 164 |
| Msa0875990 | AT5G16030.4 | 57.962 | 157 | 41 | 6 | 14 | 150 | 2 | 153 | 9.22e-46 | 154 |
| Msa0875990 | AT3G02500.3 | 51.807 | 166 | 50 | 5 | 15 | 164 | 3 | 154 | 2.50e-45 | 154 |
| Msa0875990 | AT3G02500.1 | 51.807 | 166 | 50 | 5 | 15 | 164 | 3 | 154 | 2.77e-45 | 154 |
| Msa0875990 | AT5G16030.1 | 57.962 | 157 | 41 | 6 | 14 | 150 | 2 | 153 | 1.36e-44 | 153 |
| Msa0875990 | AT5G16030.2 | 57.595 | 158 | 41 | 6 | 14 | 150 | 2 | 154 | 1.83e-44 | 153 |
| Msa0875990 | AT5G16030.3 | 57.962 | 157 | 41 | 6 | 14 | 150 | 2 | 153 | 2.00e-44 | 153 |
| Msa0875990 | AT5G16030.5 | 71.642 | 67 | 15 | 1 | 84 | 150 | 1 | 63 | 1.86e-23 | 95.9 |
Find 40 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAATAATATTTATAATATTT+TGG | 0.130153 | 6_1:+13295030 | None:intergenic |
| TATATATGCAACCCTCTTTC+AGG | 0.198253 | 6_1:-13297524 | Msa0875990:CDS |
| TCTCCTGGATATACATTAAA+AGG | 0.205126 | 6_1:-13298541 | Msa0875990:intron |
| TCTTGTTTCATTGAACTATA+AGG | 0.296631 | 6_1:+13298721 | None:intergenic |
| ATATGCTATTATTCCTTGTT+TGG | 0.314840 | 6_1:+13295083 | None:intergenic |
| CAAGATCAGTTTACAAAAGT+TGG | 0.315706 | 6_1:-13297604 | Msa0875990:CDS |
| CTTCTCTGCTTCATTCCATT+TGG | 0.321987 | 6_1:+13297547 | None:intergenic |
| TCTAGCACTGCTTCTTCTCC+TGG | 0.359111 | 6_1:-13298556 | Msa0875990:CDS |
| AGAGTTCAATTTAACAGAAT+GGG | 0.365032 | 6_1:-13298692 | Msa0875990:CDS |
| CAGAGTTCAATTTAACAGAA+TGG | 0.417830 | 6_1:-13298693 | Msa0875990:CDS |
| AAGATCAGTTTACAAAAGTT+GGG | 0.421442 | 6_1:-13297603 | Msa0875990:CDS |
| GAATTTAATGCAAATCCATC+TGG | 0.425169 | 6_1:+13297569 | None:intergenic |
| AGAAGAAGCAGTGCTAGAAA+TGG | 0.469708 | 6_1:+13298561 | None:intergenic |
| GATTTGCATTAAATTCCAAA+TGG | 0.480750 | 6_1:-13297562 | Msa0875990:CDS |
| ATATATGCAACCCTCTTTCA+GGG | 0.494830 | 6_1:-13297523 | Msa0875990:CDS |
| GCTCATCAATTTCATAGTCC+AGG | 0.497078 | 6_1:-13297338 | Msa0875990:intron |
| TCAAACTAAATCTGAGGAAG+AGG | 0.515168 | 6_1:-13296632 | Msa0875990:intron |
| ATTGGTACTTCCCCTGAAAG+AGG | 0.520887 | 6_1:+13297512 | None:intergenic |
| TTTGCAGATAAACATTCCAT+TGG | 0.521868 | 6_1:+13297494 | None:intergenic |
| AAAACACATGGCTTCCACAT+TGG | 0.532609 | 6_1:-13298758 | Msa0875990:exon |
| GATGAACAACTTTGCAGACA+AGG | 0.536730 | 6_1:-13295154 | Msa0875990:CDS |
| TACTATAGATGCTAGAGAGA+GGG | 0.537986 | 6_1:-13294984 | Msa0875990:three_prime_UTR |
| TGGGAGTGTTTATCACCAGA+TGG | 0.544959 | 6_1:-13297584 | Msa0875990:CDS |
| ATCAAAACAAATTCAAACAA+AGG | 0.552023 | 6_1:-13297399 | Msa0875990:CDS |
| GAGTTCAATTTAACAGAATG+GGG | 0.572131 | 6_1:-13298691 | Msa0875990:CDS |
| TTGGTACTTCCCCTGAAAGA+GGG | 0.575017 | 6_1:+13297513 | None:intergenic |
| AAAGACTAAAGGAGCTGACA+TGG | 0.580020 | 6_1:+13297424 | None:intergenic |
| ACAAATTCAAACAAAGGCAA+TGG | 0.585184 | 6_1:-13297393 | Msa0875990:CDS |
| TCTTTCAGGGGAAGTACCAA+TGG | 0.590000 | 6_1:-13297510 | Msa0875990:CDS |
| GCATGTGCAGGTGGAAGTGA+AGG | 0.607259 | 6_1:-13295224 | Msa0875990:intron |
| ACTATAGATGCTAGAGAGAG+GGG | 0.619681 | 6_1:-13294983 | Msa0875990:three_prime_UTR |
| TGACAATCAAACTAAATCTG+AGG | 0.626809 | 6_1:-13296638 | Msa0875990:CDS |
| CTACTATAGATGCTAGAGAG+AGG | 0.629885 | 6_1:-13294985 | Msa0875990:three_prime_UTR |
| AAGTGAAGGACAAAGAAACA+TGG | 0.633365 | 6_1:-13295210 | Msa0875990:CDS |
| TAATGTATATATACCTCATG+TGG | 0.645884 | 6_1:-13294860 | Msa0875990:three_prime_UTR |
| AGTGAAGGACAAAGAAACAT+GGG | 0.649441 | 6_1:-13295209 | Msa0875990:CDS |
| AAGGGAAAGAAAACCAAACA+AGG | 0.650546 | 6_1:-13295096 | Msa0875990:CDS |
| TATATGCAACCCTCTTTCAG+GGG | 0.673086 | 6_1:-13297522 | Msa0875990:CDS |
| AGATGATTGCATATCCAATG+TGG | 0.681129 | 6_1:+13298744 | None:intergenic |
| GAACAACTTTGCAGACAAGG+TGG | 0.683163 | 6_1:-13295151 | Msa0875990:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAATAATAAAATATAAAT+GGG | + | chr6_1:13297454-13297473 | None:intergenic | 0.0% |
| !! | AATTAATAATAAAATATAAA+TGG | + | chr6_1:13297455-13297474 | None:intergenic | 0.0% |
| !!! | TAATAATATTTATAATATTT+TGG | + | chr6_1:13298562-13298581 | None:intergenic | 0.0% |
| !!! | ATTTTATTTTTTTTAAAAAA+AGG | - | chr6_1:13298581-13298600 | Msa0875990:CDS | 0.0% |
| !!! | AAATTTTGAATACATATTAA+AGG | - | chr6_1:13296555-13296574 | Msa0875990:intron | 10.0% |
| !!! | ATTTTTCACAAAATATTATA+TGG | + | chr6_1:13297282-13297301 | None:intergenic | 10.0% |
| !! | AAAAAAATTATTTACATCAT+TGG | + | chr6_1:13298004-13298023 | None:intergenic | 10.0% |
| !!! | ATGATGTAAATAATTTTTTT+TGG | - | chr6_1:13298004-13298023 | Msa0875990:intron | 10.0% |
| !!! | ATGTAATTTTCTCAAATTAT+TGG | - | chr6_1:13295362-13295381 | Msa0875990:intron | 15.0% |
| !!! | AATTTTATTCATATACACTT+TGG | + | chr6_1:13295884-13295903 | None:intergenic | 15.0% |
| !!! | TAACTTTTACATCTAATAAT+CGG | - | chr6_1:13296630-13296649 | Msa0875990:intron | 15.0% |
| !! | AATTAATAAGTAAAAAGATG+AGG | + | chr6_1:13296677-13296696 | None:intergenic | 15.0% |
| !! | TTATATGGAGTTTATATATA+TGG | + | chr6_1:13297267-13297286 | None:intergenic | 15.0% |
| !! | ATAATAAAATATAAATGGGT+AGG | + | chr6_1:13297450-13297469 | None:intergenic | 15.0% |
| !! | ATTATTGAACATATATAAGT+TGG | - | chr6_1:13297751-13297770 | Msa0875990:intron | 15.0% |
| !!! | AATAATTTTTTTTGGTACAA+TGG | - | chr6_1:13298012-13298031 | Msa0875990:intron | 15.0% |
| !! | TTAATAAACTCAAATAATGA+AGG | - | chr6_1:13298211-13298230 | Msa0875990:intron | 15.0% |
| !!! | AAGAAAGCATTAAAAATAAA+GGG | + | chr6_1:13298635-13298654 | None:intergenic | 15.0% |
| !! | AATCATTATGCTAATTATGA+AGG | + | chr6_1:13295251-13295270 | None:intergenic | 20.0% |
| !!! | TAATTTTCTCAAATTATTGG+CGG | - | chr6_1:13295365-13295384 | Msa0875990:intron | 20.0% |
| !! | AATTTATAAACTATGAAGCA+CGG | + | chr6_1:13295438-13295457 | None:intergenic | 20.0% |
| !! | TAAACTTGACAAAATAATGA+TGG | - | chr6_1:13295598-13295617 | Msa0875990:intron | 20.0% |
| !! | ATCAAAACAAATTCAAACAA+AGG | - | chr6_1:13296190-13296209 | Msa0875990:intron | 20.0% |
| !! | AAACAAATTAAATATGAACC+TGG | + | chr6_1:13296272-13296291 | None:intergenic | 20.0% |
| !! | GATATATAGAAGAAAGAATA+AGG | + | chr6_1:13296301-13296320 | None:intergenic | 20.0% |
| !!! | TTATATTTTTCTCTCATCTA+TGG | + | chr6_1:13296512-13296531 | None:intergenic | 20.0% |
| !!! | TTTTGAATACATATTAAAGG+AGG | - | chr6_1:13296558-13296577 | Msa0875990:intron | 20.0% |
| !! | GAAAAAAAAAAAAAACTAGC+CGG | - | chr6_1:13296601-13296620 | Msa0875990:intron | 20.0% |
| !!! | TTTGTTATCGAGTTTAATAA+TGG | - | chr6_1:13296695-13296714 | Msa0875990:intron | 20.0% |
| !! | TCAATATTTAAAAAATCGAC+CGG | + | chr6_1:13296754-13296773 | None:intergenic | 20.0% |
| !! | AACAAAACAAAATAATGCAT+TGG | + | chr6_1:13297089-13297108 | None:intergenic | 20.0% |
| !! | TCTTGGAAAATGTATATTAA+TGG | + | chr6_1:13297216-13297235 | None:intergenic | 20.0% |
| !!! | AATATTTTGTGAAAAATGTG+TGG | - | chr6_1:13297285-13297304 | Msa0875990:intron | 20.0% |
| !!! | ATCATTATTCGAATTTTGAT+TGG | + | chr6_1:13297604-13297623 | None:intergenic | 20.0% |
| !! | ATCTACGATATCAATTTATA+AGG | - | chr6_1:13297816-13297835 | Msa0875990:intron | 20.0% |
| !! | GATATCAATTTATAAGGTAA+GGG | - | chr6_1:13297822-13297841 | Msa0875990:intron | 20.0% |
| !!! | CAATTTGTTATCAAAGTATT+TGG | + | chr6_1:13297974-13297993 | None:intergenic | 20.0% |
| !! | TTATTTACATCATTGGTATA+TGG | + | chr6_1:13297997-13298016 | None:intergenic | 20.0% |
| !!! | TTAATTTCTTTTTTCTCCAT+TGG | - | chr6_1:13298183-13298202 | Msa0875990:intron | 20.0% |
| !! | AACATGAAACAATTATAGAA+GGG | - | chr6_1:13298284-13298303 | Msa0875990:intron | 20.0% |
| !! | GTTTATGAAGTATATCTATA+AGG | - | chr6_1:13298306-13298325 | Msa0875990:intron | 20.0% |
| !! | ACATCAATGTTACATATATT+TGG | + | chr6_1:13298334-13298353 | None:intergenic | 20.0% |
| !! | ATATATGTAACATTGATGTA+AGG | - | chr6_1:13298335-13298354 | Msa0875990:intron | 20.0% |
| !!! | GAAGAAAGCATTAAAAATAA+AGG | + | chr6_1:13298636-13298655 | None:intergenic | 20.0% |
| !! | TCTTGTTTCATTGAACTATA+AGG | + | chr6_1:13294871-13294890 | None:intergenic | 25.0% |
| ! | AGAGTTCAATTTAACAGAAT+GGG | - | chr6_1:13294897-13294916 | Msa0875990:three_prime_UTR | 25.0% |
| ! | TAAACTTCTTTGTGAATGTT+TGG | + | chr6_1:13295795-13295814 | None:intergenic | 25.0% |
| ! | ATGAAATTGGTTGACAAATA+GGG | + | chr6_1:13295941-13295960 | None:intergenic | 25.0% |
| ! | AAGATCAGTTTACAAAAGTT+GGG | - | chr6_1:13295986-13296005 | Msa0875990:intron | 25.0% |
| ! | GATTTGCATTAAATTCCAAA+TGG | - | chr6_1:13296027-13296046 | Msa0875990:intron | 25.0% |
| !!! | TGTTTTGATGAAAAGACTAA+AGG | + | chr6_1:13296179-13296198 | None:intergenic | 25.0% |
| !!! | GTTTTAAAATCAGACTGAAT+CGG | - | chr6_1:13296340-13296359 | Msa0875990:intron | 25.0% |
| ! | GATGTAAAAGTTAGTTAAAC+CGG | + | chr6_1:13296623-13296642 | None:intergenic | 25.0% |
| ! | AATAAGTAAAAAGATGAGGA+GGG | + | chr6_1:13296673-13296692 | None:intergenic | 25.0% |
| ! | TAATAAGTAAAAAGATGAGG+AGG | + | chr6_1:13296674-13296693 | None:intergenic | 25.0% |
| !!! | TCATTTTTCTTTTCTGCATA+AGG | + | chr6_1:13296805-13296824 | None:intergenic | 25.0% |
| ! | TTATGCAGAAAAGAAAAATG+AGG | - | chr6_1:13296804-13296823 | Msa0875990:intron | 25.0% |
| ! | TATGCAGAAAAGAAAAATGA+GGG | - | chr6_1:13296805-13296824 | Msa0875990:intron | 25.0% |
| ! | CCAAAAGAAAAATAATGCAT+TGG | + | chr6_1:13297049-13297068 | None:intergenic | 25.0% |
| !!! | CCAATGCATTATTTTTCTTT+TGG | - | chr6_1:13297046-13297065 | Msa0875990:intron | 25.0% |
| ! | AAGATTTGATTCTCTTATCT+TGG | + | chr6_1:13297233-13297252 | None:intergenic | 25.0% |
| ! | ATAAAATATAAATGGGTAGG+TGG | + | chr6_1:13297447-13297466 | None:intergenic | 25.0% |
| !!! | TTATTCGAATTTTGATTGGA+GGG | + | chr6_1:13297600-13297619 | None:intergenic | 25.0% |
| !!! | ATTATTCGAATTTTGATTGG+AGG | + | chr6_1:13297601-13297620 | None:intergenic | 25.0% |
| ! | CGATATCAATTTATAAGGTA+AGG | - | chr6_1:13297821-13297840 | Msa0875990:intron | 25.0% |
| !!! | ATAAGTCATGGTCATTTTTT+GGG | + | chr6_1:13297902-13297921 | None:intergenic | 25.0% |
| !!! | TATAAGTCATGGTCATTTTT+TGG | + | chr6_1:13297903-13297922 | None:intergenic | 25.0% |
| ! | TTGTTTCATGTTGTTGTAAT+AGG | + | chr6_1:13298276-13298295 | None:intergenic | 25.0% |
| ! | CAACATGAAACAATTATAGA+AGG | - | chr6_1:13298283-13298302 | Msa0875990:intron | 25.0% |
| ! | ATAAGGAAGAAAAAGATGAA+AGG | - | chr6_1:13298474-13298493 | Msa0875990:intron | 25.0% |
| ! | TAAGGAAGAAAAAGATGAAA+GGG | - | chr6_1:13298475-13298494 | Msa0875990:intron | 25.0% |
| ! | ATATGCTATTATTCCTTGTT+TGG | + | chr6_1:13298509-13298528 | None:intergenic | 25.0% |
| ! | TAATGTATATATACCTCATG+TGG | - | chr6_1:13298729-13298748 | Msa0875990:CDS | 25.0% |
| !! | GAAAAGTTCTGAAAAACACA+TGG | - | chr6_1:13294819-13294838 | Msa0875990:three_prime_UTR | 30.0% |
| CAGAGTTCAATTTAACAGAA+TGG | - | chr6_1:13294896-13294915 | Msa0875990:three_prime_UTR | 30.0% | |
| GAGTTCAATTTAACAGAATG+GGG | - | chr6_1:13294898-13294917 | Msa0875990:three_prime_UTR | 30.0% | |
| TCTCCTGGATATACATTAAA+AGG | - | chr6_1:13295048-13295067 | Msa0875990:exon | 30.0% | |
| ! | GTACCTTTTAATGTATATCC+AGG | + | chr6_1:13295054-13295073 | None:intergenic | 30.0% |
| ! | TAGTGAAAGAATAGGTTGAA+GGG | + | chr6_1:13295198-13295217 | None:intergenic | 30.0% |
| CATTATGCTAATTATGAAGG+TGG | + | chr6_1:13295248-13295267 | None:intergenic | 30.0% | |
| TTCAGTGTATTTACAAATGC+CGG | + | chr6_1:13295340-13295359 | None:intergenic | 30.0% | |
| GATACATTGTCAACAAATCA+CGG | - | chr6_1:13295471-13295490 | Msa0875990:intron | 30.0% | |
| AAGATTGACAAAATCATGGT+GGG | + | chr6_1:13295692-13295711 | None:intergenic | 30.0% | |
| TAAGATTGACAAAATCATGG+TGG | + | chr6_1:13295693-13295712 | None:intergenic | 30.0% | |
| CAGTAAGATTGACAAAATCA+TGG | + | chr6_1:13295696-13295715 | None:intergenic | 30.0% | |
| CTTAGCGAGATTAACATTTA+TGG | + | chr6_1:13295769-13295788 | None:intergenic | 30.0% | |
| AGAGATTATGATTGATTGAC+AGG | - | chr6_1:13295841-13295860 | Msa0875990:intron | 30.0% | |
| CATGAAATTGGTTGACAAAT+AGG | + | chr6_1:13295942-13295961 | None:intergenic | 30.0% | |
| CTATTTGTCAACCAATTTCA+TGG | - | chr6_1:13295940-13295959 | Msa0875990:intron | 30.0% | |
| GCAATATATCACCATGAAAT+TGG | + | chr6_1:13295954-13295973 | None:intergenic | 30.0% | |
| CAAGATCAGTTTACAAAAGT+TGG | - | chr6_1:13295985-13296004 | Msa0875990:intron | 30.0% | |
| GAATTTAATGCAAATCCATC+TGG | + | chr6_1:13296023-13296042 | None:intergenic | 30.0% | |
| TTTGCAGATAAACATTCCAT+TGG | + | chr6_1:13296098-13296117 | None:intergenic | 30.0% | |
| TTATCTGCAAAAACTCTTAG+TGG | - | chr6_1:13296107-13296126 | Msa0875990:intron | 30.0% | |
| ACAAATTCAAACAAAGGCAA+TGG | - | chr6_1:13296196-13296215 | Msa0875990:intron | 30.0% | |
| TTACATCCTATACCAAACTT+CGG | + | chr6_1:13296446-13296465 | None:intergenic | 30.0% | |
| GGATTACTTGAACTAAAAGA+AGG | + | chr6_1:13296868-13296887 | None:intergenic | 30.0% | |
| ! | ATTTGTTGACATCTCTACAA+TGG | + | chr6_1:13296911-13296930 | None:intergenic | 30.0% |
| TGACAATCAAACTAAATCTG+AGG | - | chr6_1:13296951-13296970 | Msa0875990:intron | 30.0% | |
| TTGTGAAAAATGTGTGGTAT+AGG | - | chr6_1:13297291-13297310 | Msa0875990:intron | 30.0% | |
| GTAGTACGTACTAGATATAT+TGG | - | chr6_1:13297318-13297337 | Msa0875990:intron | 30.0% | |
| GTACAATTGAAACAGAGATA+GGG | + | chr6_1:13297345-13297364 | None:intergenic | 30.0% | |
| TGTACAATTGAAACAGAGAT+AGG | + | chr6_1:13297346-13297365 | None:intergenic | 30.0% | |
| AAACATGAGAAACTCTACTA+TGG | + | chr6_1:13297552-13297571 | None:intergenic | 30.0% | |
| AACTTCTCAAACAATCAAAC+GGG | + | chr6_1:13297668-13297687 | None:intergenic | 30.0% | |
| GAACTTCTCAAACAATCAAA+CGG | + | chr6_1:13297669-13297688 | None:intergenic | 30.0% | |
| GTTTGATAAGTAGCTATTAG+TGG | - | chr6_1:13297716-13297735 | Msa0875990:intron | 30.0% | |
| TCAAGATAATGTGTCTCAAA+AGG | + | chr6_1:13297879-13297898 | None:intergenic | 30.0% | |
| GAGTTTATTAACTATGCCAA+TGG | + | chr6_1:13298202-13298221 | None:intergenic | 30.0% | |
| ACATAAAAATGTACCACATG+AGG | + | chr6_1:13298745-13298764 | None:intergenic | 30.0% | |
| !!! | CAGAACTTTTCTAAAGCTCA+AGG | + | chr6_1:13294810-13294829 | None:intergenic | 35.0% |
| AGATGATTGCATATCCAATG+TGG | + | chr6_1:13294848-13294867 | None:intergenic | 35.0% | |
| ! | GTAGTGAAAGAATAGGTTGA+AGG | + | chr6_1:13295199-13295218 | None:intergenic | 35.0% |
| AAGAGCAGTAGTGAAAGAAT+AGG | + | chr6_1:13295206-13295225 | None:intergenic | 35.0% | |
| TCTTTCACTACTGCTCTTAA+AGG | - | chr6_1:13295208-13295227 | Msa0875990:CDS | 35.0% | |
| AAAATCACATTAAGCCAGCT+CGG | - | chr6_1:13295622-13295641 | Msa0875990:intron | 35.0% | |
| !! | TTGCTTTTGCAAAATCACAG+TGG | - | chr6_1:13295666-13295685 | Msa0875990:intron | 35.0% |
| TTAACATTTATGGCGAGTCT+TGG | + | chr6_1:13295759-13295778 | None:intergenic | 35.0% | |
| TATATATGCAACCCTCTTTC+AGG | - | chr6_1:13296065-13296084 | Msa0875990:intron | 35.0% | |
| ATATATGCAACCCTCTTTCA+GGG | - | chr6_1:13296066-13296085 | Msa0875990:intron | 35.0% | |
| !! | ATAAGACCAAGGTATTGTAC+CGG | + | chr6_1:13296409-13296428 | None:intergenic | 35.0% |
| !! | TACCTTGGTCTTATTGAACA+AGG | - | chr6_1:13296415-13296434 | Msa0875990:intron | 35.0% |
| AACCTTGTTCAATAAGACCA+AGG | + | chr6_1:13296420-13296439 | None:intergenic | 35.0% | |
| AACAAGGTTAAACCGAAGTT+TGG | - | chr6_1:13296431-13296450 | Msa0875990:intron | 35.0% | |
| GTTAAACCGAAGTTTGGTAT+AGG | - | chr6_1:13296437-13296456 | Msa0875990:intron | 35.0% | |
| TTTCTGGATCATGGTTCAAT+TGG | + | chr6_1:13296726-13296745 | None:intergenic | 35.0% | |
| GATGGAGTTAAATTAGTGCT+TGG | + | chr6_1:13296889-13296908 | None:intergenic | 35.0% | |
| TCAAACTAAATCTGAGGAAG+AGG | - | chr6_1:13296957-13296976 | Msa0875990:intron | 35.0% | |
| TCTCTCTCTCTCAAATAAGT+TGG | - | chr6_1:13297006-13297025 | Msa0875990:intron | 35.0% | |
| CAGAGACATGACAAATTTGA+AGG | + | chr6_1:13297117-13297136 | None:intergenic | 35.0% | |
| TGAAAAATGTGTGGTATAGG+AGG | - | chr6_1:13297294-13297313 | Msa0875990:intron | 35.0% | |
| GAAAAATGTGTGGTATAGGA+GGG | - | chr6_1:13297295-13297314 | Msa0875990:intron | 35.0% | |
| AAAAATGTGTGGTATAGGAG+GGG | - | chr6_1:13297296-13297315 | Msa0875990:intron | 35.0% | |
| TGTGTAGACAGCAAAAAACT+CGG | + | chr6_1:13297408-13297427 | None:intergenic | 35.0% | |
| AAATGACCATGACTTATACG+TGG | - | chr6_1:13297905-13297924 | Msa0875990:intron | 35.0% | |
| AAGTGAAGGACAAAGAAACA+TGG | - | chr6_1:13298379-13298398 | Msa0875990:intron | 35.0% | |
| AGTGAAGGACAAAGAAACAT+GGG | - | chr6_1:13298380-13298399 | Msa0875990:intron | 35.0% | |
| AAGGGAAAGAAAACCAAACA+AGG | - | chr6_1:13298493-13298512 | Msa0875990:intron | 35.0% | |
| TACTATAGATGCTAGAGAGA+GGG | - | chr6_1:13298605-13298624 | Msa0875990:CDS | 35.0% | |
| AAAACACATGGCTTCCACAT+TGG | - | chr6_1:13294831-13294850 | Msa0875990:three_prime_UTR | 40.0% | |
| AGAAGAAGCAGTGCTAGAAA+TGG | + | chr6_1:13295031-13295050 | None:intergenic | 40.0% | |
| TATGAAGCACAAACACTCCT+TGG | - | chr6_1:13295278-13295297 | Msa0875990:intron | 40.0% | |
| TCTCAAATTATTGGCGGTGT+CGG | - | chr6_1:13295371-13295390 | Msa0875990:intron | 40.0% | |
| ATTGTGCACATGTGAGTGAA+CGG | - | chr6_1:13295515-13295534 | Msa0875990:intron | 40.0% | |
| ACATGCACTCATCAAACTCA+CGG | + | chr6_1:13295566-13295585 | None:intergenic | 40.0% | |
| GAGTTTGATGAGTGCATGTT+TGG | - | chr6_1:13295567-13295586 | Msa0875990:intron | 40.0% | |
| CTTCTCTGCTTCATTCCATT+TGG | + | chr6_1:13296045-13296064 | None:intergenic | 40.0% | |
| TATATGCAACCCTCTTTCAG+GGG | - | chr6_1:13296067-13296086 | Msa0875990:intron | 40.0% | |
| AAAGACTAAAGGAGCTGACA+TGG | + | chr6_1:13296168-13296187 | None:intergenic | 40.0% | |
| GCTCATCAATTTCATAGTCC+AGG | - | chr6_1:13296251-13296270 | Msa0875990:intron | 40.0% | |
| !! | TAAGACCAAGGTATTGTACC+GGG | + | chr6_1:13296408-13296427 | None:intergenic | 40.0% |
| AGAGATGCATGTACTCTAAG+TGG | - | chr6_1:13296835-13296854 | Msa0875990:intron | 40.0% | |
| GTTGACATCTCTACAATGGA+TGG | + | chr6_1:13296907-13296926 | None:intergenic | 40.0% | |
| ! | TGTACATGCCACTCAAGTTT+TGG | - | chr6_1:13297360-13297379 | Msa0875990:CDS | 40.0% |
| CAAAAAACTCGGGGAAAGTA+TGG | + | chr6_1:13297397-13297416 | None:intergenic | 40.0% | |
| TGTAGACAGCAAAAAACTCG+GGG | + | chr6_1:13297406-13297425 | None:intergenic | 40.0% | |
| GTGTAGACAGCAAAAAACTC+GGG | + | chr6_1:13297407-13297426 | None:intergenic | 40.0% | |
| !!! | TCGAATTTTGATTGGAGGGT+AGG | + | chr6_1:13297596-13297615 | None:intergenic | 40.0% |
| ATCAAACGGGTGAAGTCTAA+CGG | + | chr6_1:13297655-13297674 | None:intergenic | 40.0% | |
| AAGCAACCACGTATAAGTCA+TGG | + | chr6_1:13297914-13297933 | None:intergenic | 40.0% | |
| TAAGGTACAAATGCATGTGC+AGG | - | chr6_1:13298353-13298372 | Msa0875990:intron | 40.0% | |
| GATGAACAACTTTGCAGACA+AGG | - | chr6_1:13298435-13298454 | Msa0875990:intron | 40.0% | |
| !!! | GTGGTTGCTTTTCATGGATA+AGG | - | chr6_1:13298457-13298476 | Msa0875990:intron | 40.0% |
| CTACTATAGATGCTAGAGAG+AGG | - | chr6_1:13298604-13298623 | Msa0875990:CDS | 40.0% | |
| ACTATAGATGCTAGAGAGAG+GGG | - | chr6_1:13298606-13298625 | Msa0875990:CDS | 40.0% | |
| GCACAAACACTCCTTGGATT+AGG | - | chr6_1:13295284-13295303 | Msa0875990:intron | 45.0% | |
| !! | TACAAATGCCGGTGTTGTGT+CGG | + | chr6_1:13295329-13295348 | None:intergenic | 45.0% |
| ACGGATACAGACACGGTAAT+CGG | + | chr6_1:13295419-13295438 | None:intergenic | 45.0% | |
| ATGAAGCACGGATACAGACA+CGG | + | chr6_1:13295426-13295445 | None:intergenic | 45.0% | |
| CGGTGAGCTCAGTAAAATCA+TGG | - | chr6_1:13295535-13295554 | Msa0875990:intron | 45.0% | |
| !! | TGGGAGTGTTTATCACCAGA+TGG | - | chr6_1:13296005-13296024 | Msa0875990:intron | 45.0% |
| TTGGTACTTCCCCTGAAAGA+GGG | + | chr6_1:13296079-13296098 | None:intergenic | 45.0% | |
| ATTGGTACTTCCCCTGAAAG+AGG | + | chr6_1:13296080-13296099 | None:intergenic | 45.0% | |
| !! | TCTTTCAGGGGAAGTACCAA+TGG | - | chr6_1:13296079-13296098 | Msa0875990:intron | 45.0% |
| TAGTTGAAGCGAGAACCCAT+CGG | - | chr6_1:13296364-13296383 | Msa0875990:intron | 45.0% | |
| ATACCAACGAGTGAACCGAT+GGG | + | chr6_1:13296382-13296401 | None:intergenic | 45.0% | |
| !! | AAGACCAAGGTATTGTACCG+GGG | + | chr6_1:13296407-13296426 | None:intergenic | 45.0% |
| CCATGATCCAGAAACTCTTC+CGG | - | chr6_1:13296732-13296751 | Msa0875990:intron | 45.0% | |
| AAATCGACCGGAAGAGTTTC+TGG | + | chr6_1:13296742-13296761 | None:intergenic | 45.0% | |
| ! | ACTCGGGGAAAGTATGGATA+CGG | + | chr6_1:13297391-13297410 | None:intergenic | 45.0% |
| GAACAACTTTGCAGACAAGG+TGG | - | chr6_1:13298438-13298457 | Msa0875990:intron | 45.0% | |
| !!! | GACAAGGTGGTTGCTTTTCA+TGG | - | chr6_1:13298451-13298470 | Msa0875990:intron | 45.0% |
| !!! | TATTATATTATTATTTTTAG+TGG | - | chr6_1:13296483-13296502 | Msa0875990:intron | 5.0% |
| TCTAGCACTGCTTCTTCTCC+TGG | - | chr6_1:13295033-13295052 | Msa0875990:three_prime_UTR | 50.0% | |
| ! | TCCTTGGATTAGGCGTGTTC+CGG | - | chr6_1:13295294-13295313 | Msa0875990:intron | 50.0% |
| AAGCTTCAACGAAACCGAGC+TGG | + | chr6_1:13295639-13295658 | None:intergenic | 50.0% | |
| CATACCAACGAGTGAACCGA+TGG | + | chr6_1:13296383-13296402 | None:intergenic | 50.0% | |
| TTCACTCGTTGGTATGACCC+CGG | - | chr6_1:13296387-13296406 | Msa0875990:intron | 50.0% | |
| ATGACCCCGGTACAATACCT+TGG | - | chr6_1:13296400-13296419 | Msa0875990:intron | 50.0% | |
| ! | CCGGAAGAGTTTCTGGATCA+TGG | + | chr6_1:13296735-13296754 | None:intergenic | 50.0% |
| ! | GGGGAAAGTATGGATACGGA+GGG | + | chr6_1:13297387-13297406 | None:intergenic | 50.0% |
| GGTACAAATGCATGTGCAGG+TGG | - | chr6_1:13298356-13298375 | Msa0875990:intron | 50.0% | |
| ACCGGAACACGCCTAATCCA+AGG | + | chr6_1:13295298-13295317 | None:intergenic | 55.0% | |
| !! | GAACCCATCGGTTCACTCGT+TGG | - | chr6_1:13296376-13296395 | Msa0875990:intron | 55.0% |
| CGGAGGGACCAAAACTTGAG+TGG | + | chr6_1:13297371-13297390 | None:intergenic | 55.0% | |
| ! | CGGGGAAAGTATGGATACGG+AGG | + | chr6_1:13297388-13297407 | None:intergenic | 55.0% |
| GCATGTGCAGGTGGAAGTGA+AGG | - | chr6_1:13298365-13298384 | Msa0875990:intron | 55.0% | |
| !! | GTTGTGTCGGTGTCGGACAC+CGG | + | chr6_1:13295316-13295335 | None:intergenic | 60.0% |
| GTCCGACACCGACACAACAC+CGG | - | chr6_1:13295318-13295337 | Msa0875990:intron | 60.0% | |
| !! | TGCCGGTGTTGTGTCGGTGT+CGG | + | chr6_1:13295323-13295342 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 13294803 | 13298808 | 13294803 | ID=Msa0875990;Name=Msa0875990 |
| chr6_1 | mRNA | 13294803 | 13298808 | 13294803 | ID=Msa0875990-mRNA-1;Parent=Msa0875990;Name=Msa0875990-mRNA-1;_AED=0.29;_eAED=0.29;_QI=35|0.33|0.75|1|1|1|4|257|255 |
| chr6_1 | exon | 13294803 | 13295236 | 13294803 | ID=Msa0875990-mRNA-1:exon:3932;Parent=Msa0875990-mRNA-1 |
| chr6_1 | exon | 13296633 | 13296694 | 13296633 | ID=Msa0875990-mRNA-1:exon:3931;Parent=Msa0875990-mRNA-1 |
| chr6_1 | exon | 13297339 | 13297635 | 13297339 | ID=Msa0875990-mRNA-1:exon:3930;Parent=Msa0875990-mRNA-1 |
| chr6_1 | exon | 13298542 | 13298808 | 13298542 | ID=Msa0875990-mRNA-1:exon:3929;Parent=Msa0875990-mRNA-1 |
| chr6_1 | five_prime_UTR | 13298774 | 13298808 | 13298774 | ID=Msa0875990-mRNA-1:five_prime_utr;Parent=Msa0875990-mRNA-1 |
| chr6_1 | CDS | 13298542 | 13298773 | 13298542 | ID=Msa0875990-mRNA-1:cds;Parent=Msa0875990-mRNA-1 |
| chr6_1 | CDS | 13297339 | 13297635 | 13297339 | ID=Msa0875990-mRNA-1:cds;Parent=Msa0875990-mRNA-1 |
| chr6_1 | CDS | 13296633 | 13296694 | 13296633 | ID=Msa0875990-mRNA-1:cds;Parent=Msa0875990-mRNA-1 |
| chr6_1 | CDS | 13295060 | 13295236 | 13295060 | ID=Msa0875990-mRNA-1:cds;Parent=Msa0875990-mRNA-1 |
| chr6_1 | three_prime_UTR | 13294803 | 13295059 | 13294803 | ID=Msa0875990-mRNA-1:three_prime_utr;Parent=Msa0875990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
