AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0978260


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0978260 MtrunA17_Chr6g0457141 80.656 305 9 2 1 255 1 305 5.12e-175 484
Msa0978260 MtrunA17_Chr7g0220871 52.508 299 79 8 11 251 9 302 7.30e-89 265
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0978260 AT3G02500.2 60.741 135 47 3 15 148 3 132 3.75e-49 163
Msa0978260 AT5G16030.4 57.325 157 42 6 14 150 2 153 1.31e-45 154
Msa0978260 AT3G02500.1 54.667 150 47 4 15 148 3 147 5.04e-45 153
Msa0978260 AT3G02500.3 54.667 150 47 4 15 148 3 147 5.11e-45 153
Msa0978260 AT5G16030.1 57.325 157 42 6 14 150 2 153 1.97e-44 153
Msa0978260 AT5G16030.3 57.325 157 42 6 14 150 2 153 2.55e-44 152
Msa0978260 AT5G16030.2 56.962 158 42 6 14 150 2 154 2.57e-44 152
Msa0978260 AT5G16030.5 71.642 67 15 1 84 150 1 63 1.67e-23 95.9

Find 42 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATAATATTTATAATATTT+TGG 0.130153 6_4:-13976280 None:intergenic
TCCCCTGGATATACATTAAA+AGG 0.175482 6_4:+13972926 Msa0978260:CDS
TATATATGCAACCCTCTTTC+AGG 0.198253 6_4:+13973952 Msa0978260:CDS
TCTTGTTTCATTGAACTATA+AGG 0.296631 6_4:-13972746 None:intergenic
ATATGCTATTATTCCTTGTT+TGG 0.314840 6_4:-13976228 None:intergenic
CAAGATCAGTTTACAAAAGT+TGG 0.315706 6_4:+13973872 Msa0978260:CDS
CTTCTCTGCTTCATTCCATT+TGG 0.321987 6_4:-13973929 None:intergenic
AGAGTTCAATTTAACAGAAT+GGG 0.365032 6_4:+13972775 Msa0978260:CDS
TCTAGCACTGCTTCTTCCCC+TGG 0.414391 6_4:+13972911 Msa0978260:CDS
CAGAGTTCAATTTAACAGAA+TGG 0.417830 6_4:+13972774 Msa0978260:CDS
AAGATCAGTTTACAAAAGTT+GGG 0.421442 6_4:+13973873 Msa0978260:CDS
GAATTTAATGCAAATCCATC+TGG 0.425169 6_4:-13973907 None:intergenic
ATAAACCTTGAGCTTTAGAA+AGG 0.435384 6_4:+13972680 None:intergenic
GCTCTTCAATTTCATAGTCC+AGG 0.458142 6_4:+13974138 Msa0978260:CDS
GATTTGCATTAAATTCCAAA+TGG 0.480750 6_4:+13973914 Msa0978260:CDS
ATATATGCAACCCTCTTTCA+GGG 0.494830 6_4:+13973953 Msa0978260:CDS
CAGAACCTTTCTAAAGCTCA+AGG 0.501020 6_4:-13972685 None:intergenic
TCAAACTAAATCTGAGGAAG+AGG 0.510446 6_4:+13974844 Msa0978260:CDS
ATTGGTACTTCCCCTGAAAG+AGG 0.520887 6_4:-13973964 None:intergenic
GGAAGAAGCAGTGCTAGAAA+TGG 0.521110 6_4:-13972906 None:intergenic
TTCATTGAACTATAAGGAGA+TGG 0.521597 6_4:-13972740 None:intergenic
TTTGCAGATAAACATTCCAT+TGG 0.521868 6_4:-13973982 None:intergenic
AAAACACATGGCTTCCACAT+TGG 0.533224 6_4:+13972709 Msa0978260:exon
GATGAACAACTTTGCAGACA+AGG 0.536730 6_4:+13976157 Msa0978260:CDS
TACTATAGATGCTAGAGAGA+GGG 0.537986 6_4:+13976328 Msa0978260:three_prime_UTR
TGGGAGTGTTTATCACCAGA+TGG 0.544959 6_4:+13973892 Msa0978260:CDS
GAGTTCAATTTAACAGAATG+GGG 0.572131 6_4:+13972776 Msa0978260:CDS
TTGGTACTTCCCCTGAAAGA+GGG 0.575017 6_4:-13973963 None:intergenic
AAAGACTAAAGGAGCTGACA+TGG 0.580020 6_4:-13974052 None:intergenic
TCTTTCAGGGGAAGTACCAA+TGG 0.590000 6_4:+13973966 Msa0978260:CDS
GCATGTGCAGGTGGAAGTGA+AGG 0.607259 6_4:+13976087 Msa0978260:intron
ACTATAGATGCTAGAGAGAG+GGG 0.619681 6_4:+13976329 Msa0978260:three_prime_UTR
ACAAATTCAAACAAAGACAA+TGG 0.619710 6_4:+13974083 Msa0978260:CDS
AGATGGTTGCATTTCCAATG+TGG 0.621268 6_4:-13972723 None:intergenic
CTACTATAGATGCTAGAGAG+AGG 0.629885 6_4:+13976327 Msa0978260:three_prime_UTR
AAGTGAAGGACAAAGAAACA+TGG 0.633365 6_4:+13976101 Msa0978260:CDS
TGATAATCAAACTAAATCTG+AGG 0.644716 6_4:+13974838 Msa0978260:CDS
TAATGTATATATACCTCATG+TGG 0.645884 6_4:+13976451 Msa0978260:three_prime_UTR
AGTGAAGGACAAAGAAACAT+GGG 0.649441 6_4:+13976102 Msa0978260:CDS
AAGGGAAAGAAAACCAAACA+AGG 0.650546 6_4:+13976215 Msa0978260:CDS
TATATGCAACCCTCTTTCAG+GGG 0.673086 6_4:+13973954 Msa0978260:CDS
GAACAACTTTGCAGACAAGG+TGG 0.683163 6_4:+13976160 Msa0978260:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAATAATAAAATATAAAT+GGG - chr6_4:13975280-13975299 None:intergenic 0.0%
!! AATTAATAATAAAATATAAA+TGG - chr6_4:13975281-13975300 None:intergenic 0.0%
!!! TAATAATATTTATAATATTT+TGG - chr6_4:13976283-13976302 None:intergenic 0.0%
!!! TATTATATTACTATTTTTTG+TGG + chr6_4:13974367-13974386 Msa0978260:intron 10.0%
!! ATTATTGAACATATATAAAT+TGG + chr6_4:13975670-13975689 Msa0978260:intron 10.0%
!! ATTATTGAACATATATAAAT+TGG + chr6_4:13975670-13975689 Msa0978260:intron 10.0%
!! AAAAAAATTATTTACATCAT+TGG - chr6_4:13975838-13975857 None:intergenic 10.0%
!!! ATGATGTAAATAATTTTTTT+TGG + chr6_4:13975838-13975857 Msa0978260:intron 10.0%
!!! TAATTTTCTCAAATTATTAG+CGG + chr6_4:13973245-13973264 Msa0978260:intron 15.0%
!!! TGATAATTAGTTTTTTTACT+TGG - chr6_4:13974466-13974485 None:intergenic 15.0%
!!! AACTAGTTAATTATTTTCAT+TGG - chr6_4:13974491-13974510 None:intergenic 15.0%
!! ATAAATAAGCAAAAAAGATA+AGG - chr6_4:13974563-13974582 None:intergenic 15.0%
!! AAGAAAGAAATAAAATGTTT+CGG - chr6_4:13974923-13974942 None:intergenic 15.0%
!!! ATTTTTCACAAAATATTACA+TGG - chr6_4:13975108-13975127 None:intergenic 15.0%
!! ATAATAAAATATAAATGGGT+AGG - chr6_4:13975276-13975295 None:intergenic 15.0%
!!! AATAATTTTTTTTGGTACAA+TGG + chr6_4:13975846-13975865 Msa0978260:intron 15.0%
!!! AAGAAAGCATTAAAAATAAA+GGG - chr6_4:13976358-13976377 None:intergenic 15.0%
!! AATCATTATGCTAATTATGA+AGG - chr6_4:13973132-13973151 None:intergenic 20.0%
!! AATTTATAAACTATGAAGCA+CGG - chr6_4:13973312-13973331 None:intergenic 20.0%
!!! CTTTAGTTCATATTTGAATT+TGG - chr6_4:13973580-13973599 None:intergenic 20.0%
!!! TTTTTTTTATACTAACGGTA+CGG + chr6_4:13973747-13973766 Msa0978260:intron 20.0%
!! TAAAGAATTAACCTATGTTA+TGG - chr6_4:13974209-13974228 None:intergenic 20.0%
!! TTTATAAAATCAGACTGAAT+CGG + chr6_4:13974225-13974244 Msa0978260:intron 20.0%
!! TCAATATTTAAAAAATCGAC+CGG - chr6_4:13974641-13974660 None:intergenic 20.0%
!! TTACATGGAGTTTATATATA+TGG - chr6_4:13975093-13975112 None:intergenic 20.0%
!!! AATATTTTGTGAAAAATGTG+TGG + chr6_4:13975111-13975130 Msa0978260:intron 20.0%
!!! ATGAATAGTGTTTTTTTTTG+TGG - chr6_4:13975442-13975461 None:intergenic 20.0%
!!! ATTGGACTTTTGATAAAAAA+AGG + chr6_4:13975688-13975707 Msa0978260:intron 20.0%
!!! TTGGACTTTTGATAAAAAAA+GGG + chr6_4:13975689-13975708 Msa0978260:intron 20.0%
!!! AATTGGACTTTTGATAAAAA+AGG + chr6_4:13975687-13975706 Msa0978260:intron 20.0%
!!! ATTGGACTTTTGATAAAAAA+GGG + chr6_4:13975688-13975707 Msa0978260:intron 20.0%
!!! TTAATTTCTTTTTTCTCCAT+TGG + chr6_4:13975917-13975936 Msa0978260:intron 20.0%
!!! TAACTTGTCTTATTTTTTGT+GGG - chr6_4:13975966-13975985 None:intergenic 20.0%
!!! ATAACTTGTCTTATTTTTTG+TGG - chr6_4:13975967-13975986 None:intergenic 20.0%
!! AACATGAAACAATTATAGAA+GGG + chr6_4:13976006-13976025 Msa0978260:intron 20.0%
!! GTTTATGAAGTATATCTATA+AGG + chr6_4:13976028-13976047 Msa0978260:intron 20.0%
!! ACATCAATGTTACATATATT+TGG - chr6_4:13976056-13976075 None:intergenic 20.0%
!! ATATATGTAACATTGATGTA+AGG + chr6_4:13976057-13976076 Msa0978260:intron 20.0%
!!! GAAGAAAGCATTAAAAATAA+AGG - chr6_4:13976359-13976378 None:intergenic 20.0%
!! TCTTGTTTCATTGAACTATA+AGG - chr6_4:13972749-13972768 None:intergenic 25.0%
! AGAGTTCAATTTAACAGAAT+GGG + chr6_4:13972775-13972794 Msa0978260:CDS 25.0%
!! TACCTTTTAATGTATATCCA+GGG - chr6_4:13972931-13972950 None:intergenic 25.0%
!! TTACCTTTTAATGTATATCC+AGG - chr6_4:13972932-13972951 None:intergenic 25.0%
! AAGATCAGTTTACAAAAGTT+GGG + chr6_4:13973873-13973892 Msa0978260:CDS 25.0%
! GATTTGCATTAAATTCCAAA+TGG + chr6_4:13973914-13973933 Msa0978260:CDS 25.0%
!!! TGTTTTGATGAAAAGACTAA+AGG - chr6_4:13974066-13974085 None:intergenic 25.0%
! ACAAATTCAAACAAAGACAA+TGG + chr6_4:13974083-13974102 Msa0978260:CDS 25.0%
! TCTTCTATTTACCATAACAT+AGG + chr6_4:13974195-13974214 Msa0978260:intron 25.0%
! ATAAGCAAAAAAGATAAGGA+GGG - chr6_4:13974559-13974578 None:intergenic 25.0%
! AATAAGCAAAAAAGATAAGG+AGG - chr6_4:13974560-13974579 None:intergenic 25.0%
!! TTTGTTATCGAGTTTAATGA+TGG + chr6_4:13974582-13974601 Msa0978260:intron 25.0%
!!! TCATTTTTCTTTTCTGCATA+AGG - chr6_4:13974692-13974711 None:intergenic 25.0%
! TTATGCAGAAAAGAAAAATG+AGG + chr6_4:13974691-13974710 Msa0978260:intron 25.0%
! TATGCAGAAAAGAAAAATGA+GGG + chr6_4:13974692-13974711 Msa0978260:intron 25.0%
! TGATAATCAAACTAAATCTG+AGG + chr6_4:13974838-13974857 Msa0978260:CDS 25.0%
!!! AATAGTTTTACAATCGAACA+CGG + chr6_4:13974966-13974985 Msa0978260:intron 25.0%
! AAGATTTGATTCTCTTATCT+TGG - chr6_4:13975059-13975078 None:intergenic 25.0%
! GAGTTTATATATATGGCTAT+TGG - chr6_4:13975086-13975105 None:intergenic 25.0%
! ATAAAATATAAATGGGTAGG+TGG - chr6_4:13975273-13975292 None:intergenic 25.0%
!!! AATAGTGTTTTTTTTTGTGG+TGG - chr6_4:13975439-13975458 None:intergenic 25.0%
!!! ATCATTGTTCGAATTTTGAT+TGG - chr6_4:13975529-13975548 None:intergenic 25.0%
! AAACTTCTCAAACAATCAAA+CGG - chr6_4:13975594-13975613 None:intergenic 25.0%
! TTGTTTCATGTTGTTGTAAT+AGG - chr6_4:13975998-13976017 None:intergenic 25.0%
! CAACATGAAACAATTATAGA+AGG + chr6_4:13976005-13976024 Msa0978260:intron 25.0%
! ATAAGGAAGAAAAAGATGAA+AGG + chr6_4:13976196-13976215 Msa0978260:CDS 25.0%
! TAAGGAAGAAAAAGATGAAA+GGG + chr6_4:13976197-13976216 Msa0978260:CDS 25.0%
! ATATGCTATTATTCCTTGTT+TGG - chr6_4:13976231-13976250 None:intergenic 25.0%
! TAATGTATATATACCTCATG+TGG + chr6_4:13976451-13976470 Msa0978260:three_prime_UTR 25.0%
TTCATTGAACTATAAGGAGA+TGG - chr6_4:13972743-13972762 None:intergenic 30.0%
CAGAGTTCAATTTAACAGAA+TGG + chr6_4:13972774-13972793 Msa0978260:CDS 30.0%
GAGTTCAATTTAACAGAATG+GGG + chr6_4:13972776-13972795 Msa0978260:CDS 30.0%
! ACCTTTTAATGTATATCCAG+GGG - chr6_4:13972930-13972949 None:intergenic 30.0%
AGAGAAACTTGATGAAACTA+TGG - chr6_4:13973021-13973040 None:intergenic 30.0%
! TAGTGAAAGAATAGGTTGAA+GGG - chr6_4:13973079-13973098 None:intergenic 30.0%
TATGAAGGTAGTTCATTCTT+TGG - chr6_4:13973117-13973136 None:intergenic 30.0%
TTCAGTGTAATTACAAGTGT+CGG - chr6_4:13973220-13973239 None:intergenic 30.0%
TTTGGAGAATGACAAAATCA+TGG - chr6_4:13973562-13973581 None:intergenic 30.0%
! AGTTTTTGTCAAAATCACGA+TGG + chr6_4:13973611-13973630 Msa0978260:intron 30.0%
TAGCGAGATTAATATAATCG+TGG - chr6_4:13973641-13973660 None:intergenic 30.0%
ATTACTTCTTCGTGAATGTT+TGG - chr6_4:13973669-13973688 None:intergenic 30.0%
CATGAAATTGGTTGACAAAT+AGG - chr6_4:13973829-13973848 None:intergenic 30.0%
CTATTTGTCAACCAATTTCA+TGG + chr6_4:13973827-13973846 Msa0978260:intron 30.0%
GCAATATATCACCATGAAAT+TGG - chr6_4:13973841-13973860 None:intergenic 30.0%
CAAGATCAGTTTACAAAAGT+TGG + chr6_4:13973872-13973891 Msa0978260:CDS 30.0%
GAATTTAATGCAAATCCATC+TGG - chr6_4:13973910-13973929 None:intergenic 30.0%
TTTGCAGATAAACATTCCAT+TGG - chr6_4:13973985-13974004 None:intergenic 30.0%
TTATCTGCAAAAACTCTTAG+TGG + chr6_4:13973994-13974013 Msa0978260:CDS 30.0%
AAGTATGTGAATTAAGAACC+TGG - chr6_4:13974159-13974178 None:intergenic 30.0%
TTTACATCGTATACCAACTT+CGG - chr6_4:13974331-13974350 None:intergenic 30.0%
! CTATATTTTTCTCCCATCTA+TGG - chr6_4:13974396-13974415 None:intergenic 30.0%
TTTATGGATCATGGTTCAAT+CGG - chr6_4:13974613-13974632 None:intergenic 30.0%
! ATTTGTTGACATCTCTACAA+TGG - chr6_4:13974798-13974817 None:intergenic 30.0%
TTGTGAAAAATGTGTGGTAT+AGG + chr6_4:13975117-13975136 Msa0978260:intron 30.0%
GACAATGCATAAAATATGCA+AGG + chr6_4:13975394-13975413 Msa0978260:intron 30.0%
AAACATGAGAAACTCTACTA+TGG - chr6_4:13975477-13975496 None:intergenic 30.0%
!!! TTGTTCGAATTTTGATTGGA+GGG - chr6_4:13975525-13975544 None:intergenic 30.0%
!!! ATTGTTCGAATTTTGATTGG+AGG - chr6_4:13975526-13975545 None:intergenic 30.0%
AACTTCTCAAACAATCAAAC+GGG - chr6_4:13975593-13975612 None:intergenic 30.0%
GTTTGATAAGTAGCTATTAG+TGG + chr6_4:13975636-13975655 Msa0978260:intron 30.0%
TACATCATTGGTATATTTCC+CGG - chr6_4:13975826-13975845 None:intergenic 30.0%
ACATAAAAATGTACCACATG+AGG - chr6_4:13976467-13976486 None:intergenic 30.0%
!! GAAAGGTTCTGAAAAACACA+TGG + chr6_4:13972697-13972716 Msa0978260:exon 35.0%
TCCCCTGGATATACATTAAA+AGG + chr6_4:13972926-13972945 Msa0978260:CDS 35.0%
! GTAGTGAAAGAATAGGTTGA+AGG - chr6_4:13973080-13973099 None:intergenic 35.0%
AAGAGCAGTAGTGAAAGAAT+AGG - chr6_4:13973087-13973106 None:intergenic 35.0%
TCTTTCACTACTGCTCTTAA+AGG + chr6_4:13973089-13973108 Msa0978260:intron 35.0%
TCTCAAATTATTAGCGGTGT+CGG + chr6_4:13973251-13973270 Msa0978260:intron 35.0%
CTAACTTGACAAAATCACGA+TGG + chr6_4:13973464-13973483 Msa0978260:intron 35.0%
AAAATCACATTAAGCCACGT+TGG + chr6_4:13973488-13973507 Msa0978260:intron 35.0%
TATATATGCAACCCTCTTTC+AGG + chr6_4:13973952-13973971 Msa0978260:CDS 35.0%
ATATATGCAACCCTCTTTCA+GGG + chr6_4:13973953-13973972 Msa0978260:CDS 35.0%
!! TACCTTGGTCTTATTGAACA+AGG + chr6_4:13974300-13974319 Msa0978260:intron 35.0%
AACCTTGTTCAATAAGACCA+AGG - chr6_4:13974305-13974324 None:intergenic 35.0%
!!! TTTTTTGTGGTAGCCATAGA+TGG + chr6_4:13974380-13974399 Msa0978260:intron 35.0%
! TTTTTGTGGTAGCCATAGAT+GGG + chr6_4:13974381-13974400 Msa0978260:intron 35.0%
GGATTACTTGAACTAAGAGA+AGG - chr6_4:13974755-13974774 None:intergenic 35.0%
GATGGAGTTAAATTAGTGCT+TGG - chr6_4:13974776-13974795 None:intergenic 35.0%
TCAAACTAAATCTGAGGAAG+AGG + chr6_4:13974844-13974863 Msa0978260:CDS 35.0%
TGAAAAATGTGTGGTATAGG+AGG + chr6_4:13975120-13975139 Msa0978260:intron 35.0%
GAAAAATGTGTGGTATAGGA+GGG + chr6_4:13975121-13975140 Msa0978260:intron 35.0%
AAAAATGTGTGGTATAGGAG+GGG + chr6_4:13975122-13975141 Msa0978260:intron 35.0%
GCAGTACGTACTAGATATAT+TGG + chr6_4:13975144-13975163 Msa0978260:intron 35.0%
GTCCTTATCTCTGTTTCAAT+TGG + chr6_4:13975166-13975185 Msa0978260:intron 35.0%
GTCCAATTGAAACAGAGATA+AGG - chr6_4:13975171-13975190 None:intergenic 35.0%
ATCTCTGTTTCAATTGGACA+TGG + chr6_4:13975172-13975191 Msa0978260:intron 35.0%
TGTGTAGACAGCAAAAAACT+CGG - chr6_4:13975234-13975253 None:intergenic 35.0%
! TGAGTTTAACTCAGTTGGTA+TGG + chr6_4:13975372-13975391 Msa0978260:intron 35.0%
TGCATAAAATATGCAAGGTC+CGG + chr6_4:13975399-13975418 Msa0978260:intron 35.0%
TTGATAAAAAAAGGGCAACC+CGG + chr6_4:13975697-13975716 Msa0978260:intron 35.0%
TTTGATAAAAAAGGGCAACC+CGG + chr6_4:13975772-13975791 Msa0978260:intron 35.0%
GAGTTTATTAACTACGCCAA+TGG - chr6_4:13975936-13975955 None:intergenic 35.0%
AAGTGAAGGACAAAGAAACA+TGG + chr6_4:13976101-13976120 Msa0978260:CDS 35.0%
AGTGAAGGACAAAGAAACAT+GGG + chr6_4:13976102-13976121 Msa0978260:CDS 35.0%
AAGGGAAAGAAAACCAAACA+AGG + chr6_4:13976215-13976234 Msa0978260:CDS 35.0%
TACTATAGATGCTAGAGAGA+GGG + chr6_4:13976328-13976347 Msa0978260:three_prime_UTR 35.0%
!! CAGAACCTTTCTAAAGCTCA+AGG - chr6_4:13972688-13972707 None:intergenic 40.0%
AAAACACATGGCTTCCACAT+TGG + chr6_4:13972709-13972728 Msa0978260:exon 40.0%
AGATGGTTGCATTTCCAATG+TGG - chr6_4:13972726-13972745 None:intergenic 40.0%
TATGTAGTAGAGACACTCCT+CGG + chr6_4:13973159-13973178 Msa0978260:intron 40.0%
TGAAGCACGGATATGCATAT+CGG - chr6_4:13973299-13973318 None:intergenic 40.0%
ACAATCAAATTGTGCACGTG+TGG + chr6_4:13973381-13973400 Msa0978260:intron 40.0%
CAATCAAATTGTGCACGTGT+GGG + chr6_4:13973382-13973401 Msa0978260:intron 40.0%
ACATGCACTCGTCAAAATCA+CGG - chr6_4:13973433-13973452 None:intergenic 40.0%
GGAGAATGACAAAATCATGG+TGG - chr6_4:13973559-13973578 None:intergenic 40.0%
CTTCTCTGCTTCATTCCATT+TGG - chr6_4:13973932-13973951 None:intergenic 40.0%
TATATGCAACCCTCTTTCAG+GGG + chr6_4:13973954-13973973 Msa0978260:CDS 40.0%
AAAGACTAAAGGAGCTGACA+TGG - chr6_4:13974055-13974074 None:intergenic 40.0%
GCTCTTCAATTTCATAGTCC+AGG + chr6_4:13974138-13974157 Msa0978260:CDS 40.0%
!! AAGACCAAGGTATTGTACTG+AGG - chr6_4:13974292-13974311 None:intergenic 40.0%
CCATGATCCATAAACTCTTC+CGG + chr6_4:13974619-13974638 Msa0978260:intron 40.0%
AAATCGACCGGAAGAGTTTA+TGG - chr6_4:13974629-13974648 None:intergenic 40.0%
AGAGATGCATGTACTCAAAG+TGG + chr6_4:13974722-13974741 Msa0978260:intron 40.0%
GTTGACATCTCTACAATGGA+TGG - chr6_4:13974794-13974813 None:intergenic 40.0%
CAAAAAACTCGGGGAAAGTA+TGG - chr6_4:13975223-13975242 None:intergenic 40.0%
TGTAGACAGCAAAAAACTCG+GGG - chr6_4:13975232-13975251 None:intergenic 40.0%
GTGTAGACAGCAAAAAACTC+GGG - chr6_4:13975233-13975252 None:intergenic 40.0%
CCAACTGAGTTAAACTCAAG+TGG - chr6_4:13975370-13975389 None:intergenic 40.0%
CCACTTGAGTTTAACTCAGT+TGG + chr6_4:13975367-13975386 Msa0978260:intron 40.0%
GCATAAAATATGCAAGGTCC+GGG + chr6_4:13975400-13975419 Msa0978260:intron 40.0%
CATAAAATATGCAAGGTCCG+GGG + chr6_4:13975401-13975420 Msa0978260:intron 40.0%
!!! TGTTTTTTTTTGTGGTGGCC+GGG - chr6_4:13975434-13975453 None:intergenic 40.0%
!!! GTGTTTTTTTTTGTGGTGGC+CGG - chr6_4:13975435-13975454 None:intergenic 40.0%
!!! TCGAATTTTGATTGGAGGGT+AGG - chr6_4:13975521-13975540 None:intergenic 40.0%
ATCAAACGGGTGAAGTCTAA+CGG - chr6_4:13975580-13975599 None:intergenic 40.0%
TAAGGTACAAATGCATGTGC+AGG + chr6_4:13976075-13976094 Msa0978260:intron 40.0%
GATGAACAACTTTGCAGACA+AGG + chr6_4:13976157-13976176 Msa0978260:CDS 40.0%
!!! GTGGTTGCTTTTCATGGATA+AGG + chr6_4:13976179-13976198 Msa0978260:CDS 40.0%
CTACTATAGATGCTAGAGAG+AGG + chr6_4:13976327-13976346 Msa0978260:three_prime_UTR 40.0%
ACTATAGATGCTAGAGAGAG+GGG + chr6_4:13976329-13976348 Msa0978260:three_prime_UTR 40.0%
GGAAGAAGCAGTGCTAGAAA+TGG - chr6_4:13972909-13972928 None:intergenic 45.0%
GGGTGAGCTCTGTAAAATCA+TGG + chr6_4:13973402-13973421 Msa0978260:intron 45.0%
!! TGGGAGTGTTTATCACCAGA+TGG + chr6_4:13973892-13973911 Msa0978260:CDS 45.0%
TTGGTACTTCCCCTGAAAGA+GGG - chr6_4:13973966-13973985 None:intergenic 45.0%
ATTGGTACTTCCCCTGAAAG+AGG - chr6_4:13973967-13973986 None:intergenic 45.0%
!! TCTTTCAGGGGAAGTACCAA+TGG + chr6_4:13973966-13973985 Msa0978260:CDS 45.0%
TAGTTGAACCGAGAACCCAT+CGG + chr6_4:13974249-13974268 Msa0978260:intron 45.0%
CTGACCTCAGTACAATACCT+TGG + chr6_4:13974285-13974304 Msa0978260:intron 45.0%
GAACAAGGTTGAACCGAAGT+TGG + chr6_4:13974315-13974334 Msa0978260:intron 45.0%
CCGGAAGAGTTTATGGATCA+TGG - chr6_4:13974622-13974641 None:intergenic 45.0%
! TGGACATGGCACTCAAGTTT+TGG + chr6_4:13975186-13975205 Msa0978260:intron 45.0%
! ACTCGGGGAAAGTATGGATA+CGG - chr6_4:13975217-13975236 None:intergenic 45.0%
!!! GTTTTTTTTTGTGGTGGCCG+GGG - chr6_4:13975433-13975452 None:intergenic 45.0%
GAACAACTTTGCAGACAAGG+TGG + chr6_4:13976160-13976179 Msa0978260:CDS 45.0%
!!! GACAAGGTGGTTGCTTTTCA+TGG + chr6_4:13976173-13976192 Msa0978260:CDS 45.0%
!!! AATTTTTTTTTTTATACTAA+CGG + chr6_4:13973742-13973761 Msa0978260:intron 5.0%
!!! TTATTTTTTTTAAAAAAGAA+AGG + chr6_4:13976304-13976323 Msa0978260:three_prime_UTR 5.0%
! TCCTCGGATTAGACGTGTTC+CGG + chr6_4:13973175-13973194 Msa0978260:intron 50.0%
ATCGGACACAACACAGACAC+TGG - chr6_4:13973281-13973300 None:intergenic 50.0%
AAGTTTCAGCGACACCAACG+TGG - chr6_4:13973505-13973524 None:intergenic 50.0%
AGACCAACGAGTGAACCGAT+GGG - chr6_4:13974267-13974286 None:intergenic 50.0%
! GGGGAAAGTATGGATACGGA+GGG - chr6_4:13975213-13975232 None:intergenic 50.0%
AAGTCCACTAATAGCGCACC+GGG - chr6_4:13975718-13975737 None:intergenic 50.0%
CAAGTCCACTAATAGCGCAC+CGG - chr6_4:13975719-13975738 None:intergenic 50.0%
GGTACAAATGCATGTGCAGG+TGG + chr6_4:13976078-13976097 Msa0978260:intron 50.0%
TCTAGCACTGCTTCTTCCCC+TGG + chr6_4:13972911-13972930 Msa0978260:CDS 55.0%
ACCGGAACACGTCTAATCCG+AGG - chr6_4:13973179-13973198 None:intergenic 55.0%
ACACGACACATGTCGGACAC+CGG - chr6_4:13973197-13973216 None:intergenic 55.0%
GTGTCGGACACGACACATGT+CGG - chr6_4:13973204-13973223 None:intergenic 55.0%
! CGAGTGAACCGATGGGTTCT+CGG - chr6_4:13974260-13974279 None:intergenic 55.0%
!! GAACCCATCGGTTCACTCGT+TGG + chr6_4:13974261-13974280 Msa0978260:intron 55.0%
CAGACCAACGAGTGAACCGA+TGG - chr6_4:13974268-13974287 None:intergenic 55.0%
! CGGGGAAAGTATGGATACGG+AGG - chr6_4:13975214-13975233 None:intergenic 55.0%
ACTAGAGCTCCCGCATATGC+AGG + chr6_4:13975798-13975817 Msa0978260:intron 55.0%
CTAGAGCTCCCGCATATGCA+GGG + chr6_4:13975799-13975818 Msa0978260:intron 55.0%
TTTCCCGGACCCTGCATATG+CGG - chr6_4:13975811-13975830 None:intergenic 55.0%
GCATGTGCAGGTGGAAGTGA+AGG + chr6_4:13976087-13976106 Msa0978260:intron 55.0%
GCAACCCGGTGCGCTATTAG+TGG + chr6_4:13975711-13975730 Msa0978260:intron 60.0%
! ATGCGGGAGCTCTAGTGCAC+CGG - chr6_4:13975794-13975813 None:intergenic 60.0%
TTCCCGGACCCTGCATATGC+GGG - chr6_4:13975810-13975829 None:intergenic 60.0%
AAGGTCCGGGGTTCGAACCC+CGG + chr6_4:13975413-13975432 Msa0978260:intron 65.0%
! TGCGGGAGCTCTAGTGCACC+GGG - chr6_4:13975793-13975812 None:intergenic 65.0%
GCTCCCGCATATGCAGGGTC+CGG + chr6_4:13975804-13975823 Msa0978260:intron 65.0%
CTCCCGCATATGCAGGGTCC+GGG + chr6_4:13975805-13975824 Msa0978260:intron 65.0%
GGTGGCCGGGGTTCGAACCC+CGG - chr6_4:13975421-13975440 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 13972681 13976526 13972681 ID=Msa0978260;Name=Msa0978260
chr6_4 mRNA 13972681 13976526 13972681 ID=Msa0978260-mRNA-1;Parent=Msa0978260;Name=Msa0978260-mRNA-1;_AED=0.29;_eAED=0.29;_QI=35|0.33|0.75|1|1|1|4|253|255
chr6_4 exon 13972681 13972947 13972681 ID=Msa0978260-mRNA-1:exon:4599;Parent=Msa0978260-mRNA-1
chr6_4 exon 13973863 13974159 13973863 ID=Msa0978260-mRNA-1:exon:4600;Parent=Msa0978260-mRNA-1
chr6_4 exon 13974804 13974865 13974804 ID=Msa0978260-mRNA-1:exon:4601;Parent=Msa0978260-mRNA-1
chr6_4 exon 13976097 13976526 13976097 ID=Msa0978260-mRNA-1:exon:4602;Parent=Msa0978260-mRNA-1
chr6_4 five_prime_UTR 13972681 13972715 13972681 ID=Msa0978260-mRNA-1:five_prime_utr;Parent=Msa0978260-mRNA-1
chr6_4 CDS 13972716 13972947 13972716 ID=Msa0978260-mRNA-1:cds;Parent=Msa0978260-mRNA-1
chr6_4 CDS 13973863 13974159 13973863 ID=Msa0978260-mRNA-1:cds;Parent=Msa0978260-mRNA-1
chr6_4 CDS 13974804 13974865 13974804 ID=Msa0978260-mRNA-1:cds;Parent=Msa0978260-mRNA-1
chr6_4 CDS 13976097 13976273 13976097 ID=Msa0978260-mRNA-1:cds;Parent=Msa0978260-mRNA-1
chr6_4 three_prime_UTR 13976274 13976526 13976274 ID=Msa0978260-mRNA-1:three_prime_utr;Parent=Msa0978260-mRNA-1
Gene Sequence

>Msa0978260

ATGGCTTCCACATTGGAAATGCAACCATCTCCTTATAGTTCAATGAAACAAGATGATTCAGAGTTCAATTTAACAGAATGGGGATTGAAAAGTAGAATCATAAGTAGAGAGAATACAAAATCAAGAAGATACTCAGCATCAATTGTAAGAAGCATTAGAGAAGATTCAAAGTCTTTTAGATCAAATATAACCATTTCTAGCACTGCTTCTTCCCCTGGATATACATTAAAAGCATTGCAAGCAAGATCAGTTTACAAAAGTTGGGAGTGTTTATCACCAGATGGATTTGCATTAAATTCCAAATGGAATGAAGCAGAGAAGTATATATGCAACCCTCTTTCAGGGGAAGTACCAATGGAATGTTTATCTGCAAAAACTCTTAGTGGAAGATTATTTCAAAACTCAACAACAAATAAAATCACCATGTCAGCTCCTTTAGTCTTTTCATCAAAACAAATTCAAACAAAGACAATGGCTTCAACTTATAGTTTCACAAAAGAAGATGTAGCTCTTCAATTTCATAGTCCAGAGATGTCAACAAATGAAGACTCTCAAAATTCAGATGATAATCAAACTAAATCTGAGGAAGAGGTGGAAGTGAAGGACAAAGAAACATGGGAAACAATAGAAGAAACATTGAAAGAGAAGAAAGATGAACAACTTTGCAGACAAGGTGGTTGCTTTTCATGGATAAGGAAGAAAAAGATGAAAGGGAAAGAAAACCAAACAAGGAATAATAGCATATTTCTAATTAATAATGTTTGCTAA

Protein sequence

>Msa0978260

MASTLEMQPSPYSSMKQDDSEFNLTEWGLKSRIISRENTKSRRYSASIVRSIREDSKSFRSNITISSTASSPGYTLKALQARSVYKSWECLSPDGFALNSKWNEAEKYICNPLSGEVPMECLSAKTLSGRLFQNSTTNKITMSAPLVFSSKQIQTKTMASTYSFTKEDVALQFHSPEMSTNEDSQNSDDNQTKSEEEVEVKDKETWETIEETLKEKKDEQLCRQGGCFSWIRKKKMKGKENQTRNNSIFLINNVC*