AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0855560


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0855560 MtrunA17_Chr5g0433491 97.619 210 3 2 1 208 1 210 2.34e-147 408
Msa0855560 MtrunA17_Chr3g0109681 61.751 217 73 5 1 208 2 217 2.44e-87 256
Msa0855560 MtrunA17_Chr7g0231191 34.682 173 109 3 22 192 6 176 1.17e-34 121
Msa0855560 MtrunA17_Chr2g0290281 29.885 174 112 4 34 198 8 180 2.02e-19 81.6
Msa0855560 MtrunA17_Chr4g0042551 33.913 115 74 1 68 180 96 210 1.31e-13 67.0
Msa0855560 MtrunA17_Chr7g0217691 27.778 180 120 4 11 181 2 180 6.41e-13 64.7
Msa0855560 MtrunA17_Chr4g0021111 27.815 151 98 4 35 180 6 150 9.78e-12 60.8
Msa0855560 MtrunA17_Chr7g0251531 23.636 165 119 2 29 186 22 186 2.82e-11 60.1
Msa0855560 MtrunA17_Chr4g0072591 27.907 129 84 1 70 189 46 174 3.85e-11 59.7
Msa0855560 MtrunA17_Chr5g0417761 26.136 176 122 2 14 181 5 180 4.14e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0855560 AT1G17200.1 60.000 180 69 3 29 206 24 202 2.24e-71 216
Msa0855560 AT3G14380.1 54.839 155 69 1 38 191 24 178 8.62e-50 160
Msa0855560 AT1G17200.2 55.046 109 47 2 99 206 1 108 6.72e-35 120
Msa0855560 AT5G54980.1 34.337 166 104 3 34 196 29 192 8.92e-23 91.3
Msa0855560 AT4G16442.1 30.539 167 107 3 34 191 8 174 5.42e-16 73.2
Msa0855560 AT2G35760.1 26.471 204 133 4 4 198 5 200 1.28e-14 69.7
Msa0855560 AT1G03700.1 28.105 153 99 4 41 188 13 159 6.26e-13 64.7
Msa0855560 AT1G14160.1 33.613 119 77 1 68 184 88 206 2.59e-11 60.8
Msa0855560 AT2G27370.1 30.769 117 79 1 70 184 101 217 8.57e-11 59.7

Find 62 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCCGATCTTGGTGCTTTC+AGG 0.152073 5_4:+48904926 Msa0855560:CDS
TTTCACTCATATCCTCTTAT+AGG 0.157418 5_4:+48907386 Msa0855560:CDS
ATCAAAACTATAAATCTAAA+AGG 0.252172 5_4:-48907532 None:intergenic
GTTCTATACCTTGCTGAATA+TGG 0.284110 5_4:+48907253 Msa0855560:CDS
TCTGTTGCCTATTCCGATCT+TGG 0.310861 5_4:+48904916 Msa0855560:CDS
TTGTTATAACTATCTTATAT+TGG 0.311251 5_4:+48907672 Msa0855560:three_prime_UTR
TACAAGATCTTCCATTGAAA+TGG 0.311295 5_4:+48904747 Msa0855560:CDS
ATAAAGGTACAAATTGAGTT+TGG 0.324980 5_4:-48904641 None:intergenic
AAAGGAAATGACCAACGATT+AGG 0.339951 5_4:-48907514 None:intergenic
TTCAACTATGCCTAAGGCTT+GGG 0.359587 5_4:+48905918 Msa0855560:CDS
TGGGAGTTGTTGACTTGTGC+TGG 0.377358 5_4:-48907430 None:intergenic
AGTTCAGCTTGTGGATCTTT+CGG 0.384816 5_4:+48907295 Msa0855560:CDS
ATTGGCATTGCTGCTTTCAA+TGG 0.396424 5_4:+48907460 Msa0855560:CDS
AAGGAAATGACCAACGATTA+GGG 0.397305 5_4:-48907513 None:intergenic
GAAAGCACCAAGATCGGAAT+AGG 0.406731 5_4:-48904923 None:intergenic
AATAACATGGACAAGGGAAT+TGG 0.407691 5_4:+48904712 Msa0855560:exon
TACTGAATTTCCCATTTCAA+TGG 0.408880 5_4:-48904758 None:intergenic
GCTGTTACACATAAACAAAT+AGG 0.414973 5_4:-48904850 None:intergenic
AATTCTGAGGAAAATGAGTA+TGG 0.430525 5_4:+48904892 Msa0855560:CDS
GTAGTTGATGAAGAATTTGA+AGG 0.438687 5_4:+48904778 Msa0855560:CDS
ACTAGTATATAGCTACAAAT+TGG 0.439685 5_4:-48904682 None:intergenic
CTTCAACTATGCCTAAGGCT+TGG 0.448431 5_4:+48905917 Msa0855560:CDS
CTTGCTAAATAGCCTATAAG+AGG 0.450822 5_4:-48907398 None:intergenic
AGCTTCATTGCTACGTATTG+TGG 0.458863 5_4:+48904807 Msa0855560:CDS
AGGTACAAATTGAGTTTGGT+TGG 0.466935 5_4:-48904637 None:intergenic
ACAAGATCTTCCATTGAAAT+GGG 0.467090 5_4:+48904748 Msa0855560:CDS
CATGTACTTTGTTATCCACC+AGG 0.504588 5_4:-48907636 None:intergenic
ACCTACATAATCCTAGCTGC+TGG 0.505252 5_4:+48907214 Msa0855560:CDS
CCGTCCTTCAACTATGCCTA+AGG 0.510562 5_4:+48905912 Msa0855560:CDS
CTTAGGCATAGTTGAAGGAC+GGG 0.514097 5_4:-48905911 None:intergenic
AGTTATCACATTTATTGCTG+TGG 0.518652 5_4:+48907348 Msa0855560:CDS
GAGTGAGTAATAATATTGTA+AGG 0.546708 5_4:-48907487 None:intergenic
ATTCATGTACACATCACAAA+GGG 0.551225 5_4:-48907605 None:intergenic
CATGCCAATGGTATTTGTGC+AGG 0.554512 5_4:+48905853 Msa0855560:CDS
AGCAATGCCAATGTCCTTGT+GGG 0.557112 5_4:-48907449 None:intergenic
GAATATGGAGTCCCTACTGC+AGG 0.568100 5_4:+48907268 Msa0855560:CDS
AACAACTCCCACAAGGACAT+TGG 0.574862 5_4:+48907442 Msa0855560:CDS
ATACCTGAAAGCACCAAGAT+CGG 0.574879 5_4:-48904929 None:intergenic
GCTGAACTCCATCCTGCAGT+AGG 0.577795 5_4:-48907280 None:intergenic
CAGCAATGCCAATGTCCTTG+TGG 0.579924 5_4:-48907450 None:intergenic
TCCAGCAGCTAGGATTATGT+AGG 0.582929 5_4:-48907215 None:intergenic
CTGAACTCCATCCTGCAGTA+GGG 0.588006 5_4:-48907279 None:intergenic
CATTATGCTGAAGAATTCTG+AGG 0.589250 5_4:+48904879 Msa0855560:CDS
CAAGCCTTAGGCATAGTTGA+AGG 0.590779 5_4:-48905916 None:intergenic
AGGTATTTGGTGCATGCCAA+TGG 0.592552 5_4:+48905841 Msa0855560:intron
TTAATACAGCTCCAGCAGCT+AGG 0.598816 5_4:-48907225 None:intergenic
ATATCCTGCACAAATACCAT+TGG 0.600027 5_4:-48905857 None:intergenic
CCTTAGGCATAGTTGAAGGA+CGG 0.602862 5_4:-48905912 None:intergenic
GCAGGATGGAGTTCAGCTTG+TGG 0.603477 5_4:+48907286 Msa0855560:CDS
CTCACTCTGTCCCTAATCGT+TGG 0.614120 5_4:+48907503 Msa0855560:three_prime_UTR
ATGGAGTCCCTACTGCAGGA+TGG 0.616514 5_4:+48907272 Msa0855560:CDS
CACAATAATAACATGGACAA+GGG 0.617085 5_4:+48904706 Msa0855560:exon
GTACATGAATAATTATATCC+TGG 0.624732 5_4:+48907618 Msa0855560:three_prime_UTR
TATTCATGTACACATCACAA+AGG 0.633588 5_4:-48907606 None:intergenic
CATGAATAATTATATCCTGG+TGG 0.635470 5_4:+48907621 Msa0855560:three_prime_UTR
GCACAATAATAACATGGACA+AGG 0.662151 5_4:+48904705 Msa0855560:exon
AATATAAGATAGTTATAACA+AGG 0.663165 5_4:-48907670 None:intergenic
TAGGGACTCCATATTCAGCA+AGG 0.672967 5_4:-48907261 None:intergenic
ACAAGTCAACAACTCCCACA+AGG 0.673400 5_4:+48907435 Msa0855560:CDS
ACTAGTGCACAATAATAACA+TGG 0.684958 5_4:+48904699 Msa0855560:exon
TGCTGGAGCTGTATTAACAG+AGG 0.687633 5_4:+48907231 Msa0855560:CDS
TTAGGCATAGTTGAAGGACG+GGG 0.688488 5_4:-48905910 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAAAGTAAATAAAAATTAT+AGG + chr5_4:48906690-48906709 Msa0855560:intron 10.0%
!! AAAGTAAATAAAAATTATAG+GGG + chr5_4:48906692-48906711 Msa0855560:intron 10.0%
!! CAAAAGTAAATAAAAATTAT+AGG + chr5_4:48906690-48906709 Msa0855560:intron 10.0%
!! AAAGTAAATAAAAATTATAG+GGG + chr5_4:48906692-48906711 Msa0855560:intron 10.0%
!!! ATTTTTACATCAAAATTTAA+AGG - chr5_4:48907106-48907125 None:intergenic 10.0%
!!! ATTTTTTGTGGAAAAAATAA+AGG - chr5_4:48904660-48904679 None:intergenic 15.0%
!!! TTTTTTTCATCTACTTAAAT+TGG + chr5_4:48905003-48905022 Msa0855560:intron 15.0%
!!! TTAAACAAATTTTATCTAGA+GGG - chr5_4:48905480-48905499 None:intergenic 15.0%
!!! TTTAAACAAATTTTATCTAG+AGG - chr5_4:48905481-48905500 None:intergenic 15.0%
!! CTGTTAAATATTCATATAAA+AGG + chr5_4:48906625-48906644 Msa0855560:intron 15.0%
!! AAGTAAATAAAAATTATAGG+GGG + chr5_4:48906693-48906712 Msa0855560:intron 15.0%
!! TAAAAAAATCCAAATATTAC+AGG + chr5_4:48906849-48906868 Msa0855560:intron 15.0%
!! AAAAAAATCCAAATATTACA+GGG + chr5_4:48906850-48906869 Msa0855560:intron 15.0%
!! AAGTAAATAAAAATTATAGG+GGG + chr5_4:48906693-48906712 Msa0855560:intron 15.0%
!! TAAAAAAATCCAAATATTAC+AGG + chr5_4:48906849-48906868 Msa0855560:intron 15.0%
!! AAAAAAATCCAAATATTACA+GGG + chr5_4:48906850-48906869 Msa0855560:intron 15.0%
!! ATCAAAACTATAAATCTAAA+AGG - chr5_4:48907535-48907554 None:intergenic 15.0%
!! AATATAAGATAGTTATAACA+AGG - chr5_4:48907673-48907692 None:intergenic 15.0%
!!! TACAAATTGGTTATTTTTTG+TGG - chr5_4:48904672-48904691 None:intergenic 20.0%
!! GAATAATATCCTTATGTTTA+TGG - chr5_4:48905031-48905050 None:intergenic 20.0%
!!! GAATTATGTTTTACATCAAT+AGG + chr5_4:48905594-48905613 Msa0855560:intron 20.0%
!! ACAAAACAAAATAACTAGTT+AGG + chr5_4:48905716-48905735 Msa0855560:intron 20.0%
!!! GTATTTTAATCAGTTTGTAT+AGG + chr5_4:48906202-48906221 Msa0855560:intron 20.0%
!! TATCTAAGAATTAACCATAT+TGG + chr5_4:48906540-48906559 Msa0855560:intron 20.0%
!! TTTCTTATTCATTACCAATA+TGG - chr5_4:48906557-48906576 None:intergenic 20.0%
!! GAATAAGAAAAATACTCAAA+AGG + chr5_4:48906567-48906586 Msa0855560:intron 20.0%
!! AAGGATAGAAAATAATTATC+AGG + chr5_4:48906586-48906605 Msa0855560:intron 20.0%
!! TAACATTCAAATTGAAAATG+AGG + chr5_4:48906719-48906738 Msa0855560:intron 20.0%
!! AACATTCAAATTGAAAATGA+GGG + chr5_4:48906720-48906739 Msa0855560:intron 20.0%
!! TAACATTCAAATTGAAAATG+AGG + chr5_4:48906719-48906738 Msa0855560:intron 20.0%
!! AACATTCAAATTGAAAATGA+GGG + chr5_4:48906720-48906739 Msa0855560:intron 20.0%
!! ATAAAGGTACAAATTGAGTT+TGG - chr5_4:48904644-48904663 None:intergenic 25.0%
! ACTAGTATATAGCTACAAAT+TGG - chr5_4:48904685-48904704 None:intergenic 25.0%
! AAATTGGATCCATAAACATA+AGG + chr5_4:48905019-48905038 Msa0855560:intron 25.0%
!!! TATTCAATTGTTTTGAGCTA+AGG + chr5_4:48905046-48905065 Msa0855560:intron 25.0%
!!! TTTGACTAACCTTTGAAATA+AGG + chr5_4:48905165-48905184 Msa0855560:intron 25.0%
!!! AATTTTGCACCTTATTTCAA+AGG - chr5_4:48905177-48905196 None:intergenic 25.0%
! AGAAACTAGTTAAATTGAGT+TGG - chr5_4:48905203-48905222 None:intergenic 25.0%
! TCTTAAATTCTTAGATACCT+TGG + chr5_4:48905446-48905465 Msa0855560:intron 25.0%
!!! ACCAAACTTATTTTAGTGTT+TGG + chr5_4:48905804-48905823 Msa0855560:intron 25.0%
! TCCAAACACTAAAATAAGTT+TGG - chr5_4:48905808-48905827 None:intergenic 25.0%
!! TTTTGCATATTGTAGGTATT+TGG + chr5_4:48905828-48905847 Msa0855560:intron 25.0%
!!! AATTTGCATCTTACTTTTTC+TGG + chr5_4:48906252-48906271 Msa0855560:intron 25.0%
! TAATACCATCACACATTAAA+TGG - chr5_4:48906323-48906342 None:intergenic 25.0%
! ATATTGAATGATTGCATGAA+GGG - chr5_4:48906426-48906445 None:intergenic 25.0%
! TTCTTAGATACCTTAAAGTT+TGG - chr5_4:48906530-48906549 None:intergenic 25.0%
! AGGGTTCTATAAATATTCTA+GGG + chr5_4:48906739-48906758 Msa0855560:intron 25.0%
! AGGGTTCTATAAATATTCTA+GGG + chr5_4:48906739-48906758 Msa0855560:intron 25.0%
! ACATCAAAATTTAAAGGTCT+GGG - chr5_4:48907100-48907119 None:intergenic 25.0%
! TACATCAAAATTTAAAGGTC+TGG - chr5_4:48907101-48907120 None:intergenic 25.0%
! ATTTGTGTTTGATATCCTAT+AGG + chr5_4:48907186-48907205 Msa0855560:intron 25.0%
! GAGTGAGTAATAATATTGTA+AGG - chr5_4:48907490-48907509 None:intergenic 25.0%
! GTACATGAATAATTATATCC+TGG + chr5_4:48907618-48907637 Msa0855560:three_prime_UTR 25.0%
ACTAGTGCACAATAATAACA+TGG + chr5_4:48904699-48904718 Msa0855560:exon 30.0%
CACAATAATAACATGGACAA+GGG + chr5_4:48904706-48904725 Msa0855560:exon 30.0%
TACAAGATCTTCCATTGAAA+TGG + chr5_4:48904747-48904766 Msa0855560:CDS 30.0%
ACAAGATCTTCCATTGAAAT+GGG + chr5_4:48904748-48904767 Msa0855560:CDS 30.0%
TACTGAATTTCCCATTTCAA+TGG - chr5_4:48904761-48904780 None:intergenic 30.0%
!! GTAGTTGATGAAGAATTTGA+AGG + chr5_4:48904778-48904797 Msa0855560:CDS 30.0%
GCTGTTACACATAAACAAAT+AGG - chr5_4:48904853-48904872 None:intergenic 30.0%
! AATTCTGAGGAAAATGAGTA+TGG + chr5_4:48904892-48904911 Msa0855560:CDS 30.0%
AATTTGGCAAACTTCATTGA+TGG - chr5_4:48904958-48904977 None:intergenic 30.0%
!!! ATTGTTTTGAGCTAAGGTTT+TGG + chr5_4:48905052-48905071 Msa0855560:intron 30.0%
! GTTTGAAATGAAAACTCACT+TGG + chr5_4:48905111-48905130 Msa0855560:intron 30.0%
TTTCTAACATTGAGTGATTG+AGG + chr5_4:48905218-48905237 Msa0855560:intron 30.0%
GTTGATTGTTGAGATTCAAT+TGG + chr5_4:48905406-48905425 Msa0855560:intron 30.0%
ATTCTTAGATACCTTGGTAT+CGG + chr5_4:48905452-48905471 Msa0855560:intron 30.0%
GAGCAAGTAAAACAATAGTT+AGG + chr5_4:48905691-48905710 Msa0855560:intron 30.0%
TGCAATATATTTCATGTCTG+GGG - chr5_4:48905773-48905792 None:intergenic 30.0%
CTGCAATATATTTCATGTCT+GGG - chr5_4:48905774-48905793 None:intergenic 30.0%
! GTTTGGATTTTGCATATTGT+AGG + chr5_4:48905821-48905840 Msa0855560:intron 30.0%
! TTTCAAGTAAGATATTGACC+TGG - chr5_4:48905960-48905979 None:intergenic 30.0%
!! AATGGAAGTACTTGTCAATA+TGG - chr5_4:48906305-48906324 None:intergenic 30.0%
TACTTCCATTTAATGTGTGA+TGG + chr5_4:48906315-48906334 Msa0855560:intron 30.0%
ACAACATTACCCATAATGTT+TGG + chr5_4:48906389-48906408 Msa0855560:intron 30.0%
GATATTGAATGATTGCATGA+AGG - chr5_4:48906427-48906446 None:intergenic 30.0%
TGAAATCCAACCAAACTTTA+AGG + chr5_4:48906517-48906536 Msa0855560:intron 30.0%
TAGATACCTTAAAGTTTGGT+TGG - chr5_4:48906526-48906545 None:intergenic 30.0%
GAGGGTTCTATAAATATTCT+AGG + chr5_4:48906738-48906757 Msa0855560:intron 30.0%
GGGTTCTATAAATATTCTAG+GGG + chr5_4:48906740-48906759 Msa0855560:intron 30.0%
GGTTCTATAAATATTCTAGG+GGG + chr5_4:48906741-48906760 Msa0855560:intron 30.0%
TTCTAGCATTCATACTGAAT+AGG + chr5_4:48906815-48906834 Msa0855560:intron 30.0%
ATTCATACTGAATAGGTAGA+AGG + chr5_4:48906822-48906841 Msa0855560:intron 30.0%
TTCATACTGAATAGGTAGAA+GGG + chr5_4:48906823-48906842 Msa0855560:intron 30.0%
GAGGGTTCTATAAATATTCT+AGG + chr5_4:48906738-48906757 Msa0855560:intron 30.0%
GGGTTCTATAAATATTCTAG+GGG + chr5_4:48906740-48906759 Msa0855560:intron 30.0%
GGTTCTATAAATATTCTAGG+GGG + chr5_4:48906741-48906760 Msa0855560:intron 30.0%
TTCTAGCATTCATACTGAAT+AGG + chr5_4:48906815-48906834 Msa0855560:intron 30.0%
ATTCATACTGAATAGGTAGA+AGG + chr5_4:48906822-48906841 Msa0855560:intron 30.0%
TTCATACTGAATAGGTAGAA+GGG + chr5_4:48906823-48906842 Msa0855560:intron 30.0%
AGTTATCACATTTATTGCTG+TGG + chr5_4:48907348-48907367 Msa0855560:CDS 30.0%
TTTCACTCATATCCTCTTAT+AGG + chr5_4:48907386-48907405 Msa0855560:CDS 30.0%
ATTCATGTACACATCACAAA+GGG - chr5_4:48907608-48907627 None:intergenic 30.0%
TATTCATGTACACATCACAA+AGG - chr5_4:48907609-48907628 None:intergenic 30.0%
CATGAATAATTATATCCTGG+TGG + chr5_4:48907621-48907640 Msa0855560:three_prime_UTR 30.0%
GCACAATAATAACATGGACA+AGG + chr5_4:48904705-48904724 Msa0855560:exon 35.0%
AATAACATGGACAAGGGAAT+TGG + chr5_4:48904712-48904731 Msa0855560:exon 35.0%
CATTATGCTGAAGAATTCTG+AGG + chr5_4:48904879-48904898 Msa0855560:CDS 35.0%
! CTCTATGTTTCTTTGATGGT+TGG - chr5_4:48905674-48905693 None:intergenic 35.0%
CTTGCTCTATGTTTCTTTGA+TGG - chr5_4:48905678-48905697 None:intergenic 35.0%
GCAATATATTTCATGTCTGG+GGG - chr5_4:48905772-48905791 None:intergenic 35.0%
GCTGCAATATATTTCATGTC+TGG - chr5_4:48905775-48905794 None:intergenic 35.0%
ATATCCTGCACAAATACCAT+TGG - chr5_4:48905860-48905879 None:intergenic 35.0%
TACACAAGTTAATTCACGCT+GGG + chr5_4:48906078-48906097 Msa0855560:intron 35.0%
!!! TAGGAGTGAGTGTTTTTAGT+TGG + chr5_4:48906221-48906240 Msa0855560:intron 35.0%
!!! CTTACTTTTTCTGGAATGAG+AGG + chr5_4:48906261-48906280 Msa0855560:intron 35.0%
CATGCTCAACCAAACATTAT+GGG - chr5_4:48906401-48906420 None:intergenic 35.0%
ACATGCTCAACCAAACATTA+TGG - chr5_4:48906402-48906421 None:intergenic 35.0%
! GTTGGATTTCAGTAACTTGT+TGG - chr5_4:48906508-48906527 None:intergenic 35.0%
TTATGTAGGTTTGCACCTAT+AGG - chr5_4:48907204-48907223 None:intergenic 35.0%
GTTCTATACCTTGCTGAATA+TGG + chr5_4:48907253-48907272 Msa0855560:CDS 35.0%
CTTGCTAAATAGCCTATAAG+AGG - chr5_4:48907401-48907420 None:intergenic 35.0%
AAGGAAATGACCAACGATTA+GGG - chr5_4:48907516-48907535 None:intergenic 35.0%
AAAGGAAATGACCAACGATT+AGG - chr5_4:48907517-48907536 None:intergenic 35.0%
AGCTTCATTGCTACGTATTG+TGG + chr5_4:48904807-48904826 Msa0855560:CDS 40.0%
!! ATACCTGAAAGCACCAAGAT+CGG - chr5_4:48904932-48904951 None:intergenic 40.0%
CTCACTTGGTCATTTGATAG+AGG + chr5_4:48905125-48905144 Msa0855560:intron 40.0%
ACTTGGTCATTTGATAGAGG+AGG + chr5_4:48905128-48905147 Msa0855560:intron 40.0%
CTTGGTCATTTGATAGAGGA+GGG + chr5_4:48905129-48905148 Msa0855560:intron 40.0%
GAGTGATTGAGGAGATTTGA+AGG + chr5_4:48905229-48905248 Msa0855560:intron 40.0%
TTCAACTATGCCTAAGGCTT+GGG + chr5_4:48905918-48905937 Msa0855560:CDS 40.0%
AAAAAGAAAGCCCAAGCCTT+AGG - chr5_4:48905931-48905950 None:intergenic 40.0%
!!! GAGAGTGAGCGTTTTTTGTT+AGG - chr5_4:48905994-48906013 None:intergenic 40.0%
!! AACGTGAGTTAACTTGTGTG+CGG - chr5_4:48906038-48906057 None:intergenic 40.0%
CACACAAGTTAACTCACGTT+CGG + chr5_4:48906038-48906057 Msa0855560:intron 40.0%
!! CAGCGTGAATTAACTTGTGT+AGG - chr5_4:48906079-48906098 None:intergenic 40.0%
CTACACAAGTTAATTCACGC+TGG + chr5_4:48906077-48906096 Msa0855560:intron 40.0%
! TTAAGTCACGTTGGCTACAT+TGG - chr5_4:48906139-48906158 None:intergenic 40.0%
AACGTGACTTAAGTCACGTT+GGG + chr5_4:48906147-48906166 Msa0855560:intron 40.0%
TCCAAATATTACAGGGTAGC+TGG + chr5_4:48906857-48906876 Msa0855560:intron 40.0%
ACCAGCTACCCTGTAATATT+TGG - chr5_4:48906861-48906880 None:intergenic 40.0%
TCCAAATATTACAGGGTAGC+TGG + chr5_4:48906857-48906876 Msa0855560:intron 40.0%
ACCAGCTACCCTGTAATATT+TGG - chr5_4:48906861-48906880 None:intergenic 40.0%
AGTTCAGCTTGTGGATCTTT+CGG + chr5_4:48907295-48907314 Msa0855560:CDS 40.0%
!! ATTGGCATTGCTGCTTTCAA+TGG + chr5_4:48907460-48907479 Msa0855560:CDS 40.0%
! CATGTACTTTGTTATCCACC+AGG - chr5_4:48907639-48907658 None:intergenic 40.0%
TCTGTTGCCTATTCCGATCT+TGG + chr5_4:48904916-48904935 Msa0855560:CDS 45.0%
!! GAAAGCACCAAGATCGGAAT+AGG - chr5_4:48904926-48904945 None:intergenic 45.0%
!! ATTCCGATCTTGGTGCTTTC+AGG + chr5_4:48904926-48904945 Msa0855560:CDS 45.0%
! GATACAAGAAGTGCAAGACG+AGG + chr5_4:48905616-48905635 Msa0855560:intron 45.0%
!! AGGTATTTGGTGCATGCCAA+TGG + chr5_4:48905841-48905860 Msa0855560:intron 45.0%
CATGCCAATGGTATTTGTGC+AGG + chr5_4:48905853-48905872 Msa0855560:CDS 45.0%
TTAGGCATAGTTGAAGGACG+GGG - chr5_4:48905913-48905932 None:intergenic 45.0%
CTTAGGCATAGTTGAAGGAC+GGG - chr5_4:48905914-48905933 None:intergenic 45.0%
CCTTAGGCATAGTTGAAGGA+CGG - chr5_4:48905915-48905934 None:intergenic 45.0%
CAAGCCTTAGGCATAGTTGA+AGG - chr5_4:48905919-48905938 None:intergenic 45.0%
CTTCAACTATGCCTAAGGCT+TGG + chr5_4:48905917-48905936 Msa0855560:CDS 45.0%
! GGCTTTCTTTTTGCTTGACC+AGG + chr5_4:48905939-48905958 Msa0855560:CDS 45.0%
!! AACTTGTGTGCGGGGTATTT+TGG - chr5_4:48906028-48906047 None:intergenic 45.0%
!! ACGTGAGTTAACTTGTGTGC+GGG - chr5_4:48906037-48906056 None:intergenic 45.0%
CAACGTGACTTAAGTCACGT+TGG - chr5_4:48906146-48906165 None:intergenic 45.0%
CAACGTGACTTAAGTCACGT+TGG + chr5_4:48906146-48906165 Msa0855560:intron 45.0%
ACCTACATAATCCTAGCTGC+TGG + chr5_4:48907214-48907233 Msa0855560:CDS 45.0%
TCCAGCAGCTAGGATTATGT+AGG - chr5_4:48907218-48907237 None:intergenic 45.0%
TTAATACAGCTCCAGCAGCT+AGG - chr5_4:48907228-48907247 None:intergenic 45.0%
TGCTGGAGCTGTATTAACAG+AGG + chr5_4:48907231-48907250 Msa0855560:CDS 45.0%
TAGGGACTCCATATTCAGCA+AGG - chr5_4:48907264-48907283 None:intergenic 45.0%
ACAAGTCAACAACTCCCACA+AGG + chr5_4:48907435-48907454 Msa0855560:CDS 45.0%
AACAACTCCCACAAGGACAT+TGG + chr5_4:48907442-48907461 Msa0855560:CDS 45.0%
AGCAATGCCAATGTCCTTGT+GGG - chr5_4:48907452-48907471 None:intergenic 45.0%
!! ATTATTAAAACTATAAAATT+TGG - chr5_4:48904974-48904993 None:intergenic 5.0%
!! NNNNNNNNAAATAATTTGAT+TGG + chr5_4:48905362-48905381 Msa0855560:intron 5.0%
!!! TCTAAAATATTAATTTTATT+AGG + chr5_4:48906361-48906380 Msa0855560:intron 5.0%
!! AAAAGTAAATAAAAATTATA+GGG + chr5_4:48906691-48906710 Msa0855560:intron 5.0%
!! AAAAGTAAATAAAAATTATA+GGG + chr5_4:48906691-48906710 Msa0855560:intron 5.0%
!! TCTAGAGGGTACCGATACCA+AGG - chr5_4:48905466-48905485 None:intergenic 50.0%
CCGTCCTTCAACTATGCCTA+AGG + chr5_4:48905912-48905931 Msa0855560:CDS 50.0%
!! CGTGAGTTAACTTGTGTGCG+GGG - chr5_4:48906036-48906055 None:intergenic 50.0%
CTCCGTGACTTAAGTCACGT+GGG + chr5_4:48906178-48906197 Msa0855560:intron 50.0%
TCCGTGACTTAAGTCACGTG+GGG + chr5_4:48906179-48906198 Msa0855560:intron 50.0%
GAATATGGAGTCCCTACTGC+AGG + chr5_4:48907268-48907287 Msa0855560:CDS 50.0%
CTGAACTCCATCCTGCAGTA+GGG - chr5_4:48907282-48907301 None:intergenic 50.0%
!! TGGGAGTTGTTGACTTGTGC+TGG - chr5_4:48907433-48907452 None:intergenic 50.0%
CAGCAATGCCAATGTCCTTG+TGG - chr5_4:48907453-48907472 None:intergenic 50.0%
CTCACTCTGTCCCTAATCGT+TGG + chr5_4:48907503-48907522 Msa0855560:three_prime_UTR 50.0%
CCACGTGACTTAAGTCACGG+AGG - chr5_4:48906180-48906199 None:intergenic 55.0%
CCTCCGTGACTTAAGTCACG+TGG + chr5_4:48906177-48906196 Msa0855560:intron 55.0%
CCCCCACGTGACTTAAGTCA+CGG - chr5_4:48906183-48906202 None:intergenic 55.0%
CCGTGACTTAAGTCACGTGG+GGG + chr5_4:48906180-48906199 Msa0855560:intron 55.0%
ATGGAGTCCCTACTGCAGGA+TGG + chr5_4:48907272-48907291 Msa0855560:CDS 55.0%
GCTGAACTCCATCCTGCAGT+AGG - chr5_4:48907283-48907302 None:intergenic 55.0%
GCAGGATGGAGTTCAGCTTG+TGG + chr5_4:48907286-48907305 Msa0855560:CDS 55.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 48904640 48907694 48904640 ID=Msa0855560;Name=Msa0855560
chr5_4 mRNA 48904640 48907694 48904640 ID=Msa0855560-mRNA-1;Parent=Msa0855560;Name=Msa0855560-mRNA-1;_AED=0.00;_eAED=0.00;_QI=78|1|1|1|1|1|3|208|208
chr5_4 exon 48904640 48904947 48904640 ID=Msa0855560-mRNA-1:exon:15461;Parent=Msa0855560-mRNA-1
chr5_4 exon 48905843 48905960 48905843 ID=Msa0855560-mRNA-1:exon:15462;Parent=Msa0855560-mRNA-1
chr5_4 exon 48907208 48907694 48907208 ID=Msa0855560-mRNA-1:exon:15463;Parent=Msa0855560-mRNA-1
chr5_4 five_prime_UTR 48904640 48904717 48904640 ID=Msa0855560-mRNA-1:five_prime_utr;Parent=Msa0855560-mRNA-1
chr5_4 CDS 48904718 48904947 48904718 ID=Msa0855560-mRNA-1:cds;Parent=Msa0855560-mRNA-1
chr5_4 CDS 48905843 48905960 48905843 ID=Msa0855560-mRNA-1:cds;Parent=Msa0855560-mRNA-1
chr5_4 CDS 48907208 48907486 48907208 ID=Msa0855560-mRNA-1:cds;Parent=Msa0855560-mRNA-1
chr5_4 three_prime_UTR 48907487 48907694 48907487 ID=Msa0855560-mRNA-1:three_prime_utr;Parent=Msa0855560-mRNA-1
Gene Sequence

>Msa0855560

ATGGACAAGGGAATTGGTGTTGAACTAGCTACAAGATCTTCCATTGAAATGGGAAATTCAGTAGTTGATGAAGAATTTGAAGGCAAAGAAGCTTCATTGCTACGTATTGTGGAGACTTTCTTGCGTTTGTTTCCTATTTGTTTATGTGTAACAGCTCTTATCATTATGCTGAAGAATTCTGAGGAAAATGAGTATGGTTCTGTTGCCTATTCCGATCTTGGTGCTTTCAGGTATTTGGTGCATGCCAATGGTATTTGTGCAGGATATTCACTATTCTCAGCAGTCATTGTTGCTGTGCCCCGTCCTTCAACTATGCCTAAGGCTTGGGCTTTCTTTTTGCTTGACCAGGTGCAAACCTACATAATCCTAGCTGCTGGAGCTGTATTAACAGAGGTTCTATACCTTGCTGAATATGGAGTCCCTACTGCAGGATGGAGTTCAGCTTGTGGATCTTTCGGTTCATTTTGTCACAAGATCAAAGCTTCATTAGTTATCACATTTATTGCTGTGGTTTGCTATATATTGCTTTCACTCATATCCTCTTATAGGCTATTTAGCAAGTATGATGCACCAGCACAAGTCAACAACTCCCACAAGGACATTGGCATTGCTGCTTTCAATGGCTGA

Protein sequence

>Msa0855560

MDKGIGVELATRSSIEMGNSVVDEEFEGKEASLLRIVETFLRLFPICLCVTALIIMLKNSEENEYGSVAYSDLGAFRYLVHANGICAGYSLFSAVIVAVPRPSTMPKAWAFFLLDQVQTYIILAAGAVLTEVLYLAEYGVPTAGWSSACGSFGSFCHKIKASLVITFIAVVCYILLSLISSYRLFSKYDAPAQVNNSHKDIGIAAFNG*