AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0334780


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0334780 MtrunA17_Chr2g0319111 96.907 194 6 0 1 194 1 194 6.34e-139 385
Msa0334780 MtrunA17_Chr1g0169641 37.500 88 54 1 76 163 18 104 7.07e-12 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0334780 AT5G54600.1 72.941 170 45 1 25 193 24 193 2.04e-87 256
Msa0334780 AT5G54600.2 64.118 170 41 2 25 193 24 174 3.54e-70 211
Msa0334780 AT5G23535.2 36.170 94 59 1 76 169 18 110 8.45e-12 61.2
Msa0334780 AT5G23535.1 36.170 94 59 1 76 169 18 110 8.45e-12 61.2

Find 57 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTGCTTCTGATAATGATTT+TGG 0.110324 2_4:-53611452 None:intergenic
CCATACACAACTTGAGTAAT+TGG 0.198248 2_4:+53614949 Msa0334780:three_prime_UTR
ATATACACTTAACAATAAAA+TGG 0.212660 2_4:-53614890 None:intergenic
GCTACCATTGTTGTTGTAAC+AGG 0.241999 2_4:-53611506 None:intergenic
CTCTCTTCCAACTCTTTCTT+CGG 0.281804 2_4:+53611572 Msa0334780:CDS
ATTATGTTGTGTTATTGTTT+TGG 0.299061 2_4:+53614911 Msa0334780:three_prime_UTR
TGCCTTGAATTTCAGATTGA+AGG 0.327357 2_4:+53614609 Msa0334780:intron
CACTCTCTCTCCTCTTCTTC+CGG 0.354334 2_4:+53611613 Msa0334780:CDS
AGTAGAGAAGAGGGAGAACC+AGG 0.356106 2_4:+53614286 Msa0334780:CDS
CACAAATTGCATGTTAAAGT+TGG 0.369050 2_4:+53614142 Msa0334780:CDS
TGATTGATAGTGTAGAGAAT+TGG 0.369373 2_4:+53614751 Msa0334780:CDS
AGAACCAGGGCAAATAAATA+AGG 0.386690 2_4:+53614300 Msa0334780:CDS
AACTCTCAATGTAGACTTGT+TGG 0.404882 2_4:+53615042 Msa0334780:three_prime_UTR
TAGAAGTAATATATTGAAGT+TGG 0.421672 2_4:-53615132 None:intergenic
TGTAACACTGGAAGGCTGTT+TGG 0.423940 2_4:-53614121 None:intergenic
AGTCATATCAGGACATGAAA+AGG 0.426998 2_4:+53614177 Msa0334780:CDS
GATACTGTGAAAGTCATATC+AGG 0.429641 2_4:+53614166 Msa0334780:CDS
CCAATTACTCAAGTTGTGTA+TGG 0.434585 2_4:-53614949 None:intergenic
TATACACTTAACAATAAAAT+GGG 0.446260 2_4:-53614889 None:intergenic
GACATGAAAAGGGTCAAGTC+GGG 0.450856 2_4:+53614188 Msa0334780:CDS
GAGAGAGTGATGGGAGAGAG+AGG 0.454990 2_4:-53611599 None:intergenic
ATAATCAAAACATCCTTTGT+CGG 0.463512 2_4:-53615070 None:intergenic
CATGTGAAGAGTAGAGAAGA+GGG 0.464629 2_4:+53614277 Msa0334780:CDS
AGAAGAGGAGAGAGAGTGAT+GGG 0.472459 2_4:-53611608 None:intergenic
ATCACATTTGAACTGTGAAT+AGG 0.485672 2_4:-53614633 None:intergenic
ATAACCTTATTTATTTGCCC+TGG 0.506533 2_4:-53614304 None:intergenic
AGAGAGTGAGAGTGAGGTCA+TGG 0.510092 2_4:-53611555 None:intergenic
GTTGGAAGAGAGTGAGAGTG+AGG 0.510745 2_4:-53611561 None:intergenic
GAAGCAGAAGCAAGAAGAAG+AGG 0.518926 2_4:+53611479 Msa0334780:five_prime_UTR
GTCATATCAGGACATGAAAA+GGG 0.526144 2_4:+53614178 Msa0334780:CDS
AACAATGGTAGCTATGGCTA+TGG 0.541534 2_4:+53611517 Msa0334780:exon
AGCAATGTCGTATTGTAATG+AGG 0.546477 2_4:+53613761 Msa0334780:CDS
CTTGTTGGTCCTTCCGACAA+AGG 0.546903 2_4:+53615057 Msa0334780:three_prime_UTR
TACAACAACAATGGTAGCTA+TGG 0.546953 2_4:+53611511 Msa0334780:exon
ACATGCAATTTGTGTAACAC+TGG 0.551056 2_4:-53614133 None:intergenic
GAATGATGTACCGGAAGAAG+AGG 0.552366 2_4:-53611623 None:intergenic
GGACATGAAAAGGGTCAAGT+CGG 0.554119 2_4:+53614187 Msa0334780:CDS
ATACGACATTGCTTATCTGT+CGG 0.561688 2_4:-53613751 None:intergenic
TGAATTAATATAGTAAAACT+AGG 0.562139 2_4:-53614820 None:intergenic
TTTCTGGTAGCTTAAACGAT+GGG 0.563960 2_4:+53614081 Msa0334780:intron
GCAATGTCGTATTGTAATGA+GGG 0.573580 2_4:+53613762 Msa0334780:CDS
CAAGAACTTTATGACCTACA+CGG 0.580646 2_4:-53614686 None:intergenic
AAGAATGTCGCAAGCCGTGT+AGG 0.582151 2_4:+53614672 Msa0334780:CDS
AAGAAGAGGAGAGAGAGTGA+TGG 0.583328 2_4:-53611609 None:intergenic
CTACCATTGTTGTTGTAACA+GGG 0.586494 2_4:-53611505 None:intergenic
TCAAAACATCCTTTGTCGGA+AGG 0.589800 2_4:-53615066 None:intergenic
GCATGTGAAGAGTAGAGAAG+AGG 0.595956 2_4:+53614276 Msa0334780:CDS
AGGCTGTCCGAAGAAAGAGT+TGG 0.600014 2_4:-53611579 None:intergenic
GTAGAGAAGAGGGAGAACCA+GGG 0.600154 2_4:+53614287 Msa0334780:CDS
GGTCATAAAGTTCTTGACAA+TGG 0.600337 2_4:+53614693 Msa0334780:CDS
ACATGAAAAGGGTCAAGTCG+GGG 0.610466 2_4:+53614189 Msa0334780:CDS
GCTTAAACGATGGGAGCGAA+AGG 0.614072 2_4:+53614090 Msa0334780:intron
TTGTGTATGGAGATCAACAT+AGG 0.615289 2_4:-53614936 None:intergenic
AGAGAATTGGAAGAAACTGA+AGG 0.625300 2_4:+53614764 Msa0334780:CDS
GCAATTTGTGTAACACTGGA+AGG 0.648985 2_4:-53614129 None:intergenic
TTACCCTGTTACAACAACAA+TGG 0.689972 2_4:+53611502 Msa0334780:exon
TGAAAAGGGTCAAGTCGGGG+AGG 0.705204 2_4:+53614192 Msa0334780:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAGAACATATATTTTTATAA+GGG - chr2_4:53612305-53612324 None:intergenic 10.0%
!!! AAAGAACATATATTTTTATA+AGG - chr2_4:53612306-53612325 None:intergenic 10.0%
!!! TAAATCTATATTGTTTTTAT+TGG + chr2_4:53613658-53613677 Msa0334780:intron 10.0%
!! ATAAAATTAAAGAAATTGTA+AGG - chr2_4:53613957-53613976 None:intergenic 10.0%
!!! CAATTTCTTTAATTTTATAT+TGG + chr2_4:53613959-53613978 Msa0334780:intron 10.0%
!!! GTTTCAATTTTTATTATTCT+AGG + chr2_4:53611697-53611716 Msa0334780:intron 15.0%
!!! TTCGTGTTTTTTTATTTTAT+TGG + chr2_4:53611791-53611810 Msa0334780:intron 15.0%
!!! TTTTTATTTTATTGGAATTG+TGG + chr2_4:53611799-53611818 Msa0334780:intron 15.0%
!! AATGTGAAAATATTGATAAA+AGG + chr2_4:53612262-53612281 Msa0334780:intron 15.0%
!! AATAAAATATTTATCTGTGT+CGG - chr2_4:53612443-53612462 None:intergenic 15.0%
!! TGAAAAGAAATAATCATATT+AGG - chr2_4:53613816-53613835 None:intergenic 15.0%
!!! TTCATAATAATGTTTTTTTC+TGG - chr2_4:53614344-53614363 None:intergenic 15.0%
!! TGAATTAATATAGTAAAACT+AGG - chr2_4:53614823-53614842 None:intergenic 15.0%
!! TATACACTTAACAATAAAAT+GGG - chr2_4:53614892-53614911 None:intergenic 15.0%
!! ATATACACTTAACAATAAAA+TGG - chr2_4:53614893-53614912 None:intergenic 15.0%
!!! TTTTCTACTTTTATCCATAT+GGG + chr2_4:53611726-53611745 Msa0334780:intron 20.0%
!! TAGTATCTATATGAAATTAG+TGG + chr2_4:53611852-53611871 Msa0334780:intron 20.0%
!! AGTCAATTATATATAACGAA+AGG - chr2_4:53613436-53613455 None:intergenic 20.0%
!!! TATTTCACATAACAGATTTT+TGG + chr2_4:53613505-53613524 Msa0334780:intron 20.0%
!!! ATTACACAAGACATTTTATA+AGG - chr2_4:53614044-53614063 None:intergenic 20.0%
!!! ATAATGTTTTTTTCTGGTAA+GGG - chr2_4:53614338-53614357 None:intergenic 20.0%
!!! AATAATGTTTTTTTCTGGTA+AGG - chr2_4:53614339-53614358 None:intergenic 20.0%
!!! ATTATGTTGTGTTATTGTTT+TGG + chr2_4:53614911-53614930 Msa0334780:three_prime_UTR 20.0%
!!! AATCTTCAAAATACCATTTT+TGG + chr2_4:53615097-53615116 Msa0334780:three_prime_UTR 20.0%
!!! CTTTTCTACTTTTATCCATA+TGG + chr2_4:53611725-53611744 Msa0334780:intron 25.0%
! CTTGAATTAAAAAACCCATA+TGG - chr2_4:53611743-53611762 None:intergenic 25.0%
! TTCATAATTCTGTTCATGTT+CGG + chr2_4:53611901-53611920 Msa0334780:intron 25.0%
!!! TATTTTTATAAGGGCTTAGT+TGG - chr2_4:53612296-53612315 None:intergenic 25.0%
! TATTTGAGAACAATGCATTT+CGG - chr2_4:53612685-53612704 None:intergenic 25.0%
! ATATCAAGAGAGAAAAGATA+AGG - chr2_4:53612811-53612830 None:intergenic 25.0%
! TTAGAGATAGACACAAATTA+TGG + chr2_4:53612843-53612862 Msa0334780:intron 25.0%
!!! TTGATCTTCTCTCTAAAATT+TGG - chr2_4:53612913-53612932 None:intergenic 25.0%
!!! TCTCTCTAATTTTAGCAAAA+TGG - chr2_4:53613025-53613044 None:intergenic 25.0%
!! CTTTGTGTTTTCTTTTATAG+AGG - chr2_4:53613137-53613156 None:intergenic 25.0%
!!! CATACCCTTTTTTATTTGTA+CGG + chr2_4:53613404-53613423 Msa0334780:intron 25.0%
! TGTTCCGTACAAATAAAAAA+GGG - chr2_4:53613411-53613430 None:intergenic 25.0%
! ATGTTCCGTACAAATAAAAA+AGG - chr2_4:53613412-53613431 None:intergenic 25.0%
! TGAAATCTGATTGTTTAGTA+AGG + chr2_4:53613629-53613648 Msa0334780:intron 25.0%
! AGAAATAATCATATTAGGCA+TGG - chr2_4:53613811-53613830 None:intergenic 25.0%
! AAAAAACATTTCTTTGCTCT+CGG - chr2_4:53613888-53613907 None:intergenic 25.0%
!!! AGAAATGTTTTTTCCATCAA+TGG + chr2_4:53613895-53613914 Msa0334780:intron 25.0%
!!! TTTGTTCTGTTTTTCTTTTC+TGG + chr2_4:53614065-53614084 Msa0334780:intron 25.0%
! GAAGGAGAATGTTATATAAT+AGG - chr2_4:53614395-53614414 None:intergenic 25.0%
!!! GTGTATGATGTTTGTTTTTT+CGG + chr2_4:53614546-53614565 Msa0334780:intron 25.0%
! GTTCGCTATTTAATAAAAAC+TGG + chr2_4:53614723-53614742 Msa0334780:CDS 25.0%
! CTATTTAATAAAAACTGGAG+AGG + chr2_4:53614728-53614747 Msa0334780:CDS 25.0%
! TTAAAAAAGACCAAAACCAA+AGG - chr2_4:53614988-53615007 None:intergenic 25.0%
! ATAATCAAAACATCCTTTGT+CGG - chr2_4:53615073-53615092 None:intergenic 25.0%
! GTTGTTTACAATTCCAAAAA+TGG - chr2_4:53615113-53615132 None:intergenic 25.0%
!! TCTGCTTCTGATAATGATTT+TGG - chr2_4:53611455-53611474 None:intergenic 30.0%
!! TCAAGTTCATTTTAAGAGTC+TGG + chr2_4:53611758-53611777 Msa0334780:intron 30.0%
!! CAAGTTCATTTTAAGAGTCT+GGG + chr2_4:53611759-53611778 Msa0334780:intron 30.0%
AGACAATCACAAATTTCGAT+AGG + chr2_4:53612181-53612200 Msa0334780:intron 30.0%
!! TAAATGCAAAAGTACCAGAT+AGG - chr2_4:53612355-53612374 None:intergenic 30.0%
! TATCTGGTACTTTTGCATTT+AGG + chr2_4:53612354-53612373 Msa0334780:intron 30.0%
! GTACTTTTGCATTTAGGAAT+TGG + chr2_4:53612360-53612379 Msa0334780:intron 30.0%
!!! TTATTGCTTTGTTTTACTGC+CGG + chr2_4:53612406-53612425 Msa0334780:intron 30.0%
! ACTTTTGCTCGTTTTCAATT+TGG + chr2_4:53612464-53612483 Msa0334780:intron 30.0%
TTTCGTCCATTAATTAGTTC+CGG + chr2_4:53612513-53612532 Msa0334780:intron 30.0%
AATTCACCGGAACTAATTAA+TGG - chr2_4:53612522-53612541 None:intergenic 30.0%
! TAATTAGTTCCGGTGAATTT+TGG + chr2_4:53612523-53612542 Msa0334780:intron 30.0%
AAACTAAACTCCGAATTTGT+AGG - chr2_4:53612638-53612657 None:intergenic 30.0%
AATGCATTGTTCTCAAATAG+CGG + chr2_4:53612686-53612705 Msa0334780:intron 30.0%
!! AGAAAGACACATATTTTGGA+AGG - chr2_4:53612744-53612763 None:intergenic 30.0%
! CAAGAGAAAGACACATATTT+TGG - chr2_4:53612748-53612767 None:intergenic 30.0%
AGATAGACACAAATTATGGA+AGG + chr2_4:53612847-53612866 Msa0334780:intron 30.0%
AGAAAAGGTAAGAAGATTGA+GGG + chr2_4:53612940-53612959 Msa0334780:intron 30.0%
! AGAGAGATAGACACATATTT+TGG + chr2_4:53612963-53612982 Msa0334780:intron 30.0%
! GAGAGATAGACACATATTTT+GGG + chr2_4:53612964-53612983 Msa0334780:intron 30.0%
TGCTAAAATTAGAGAGAGAT+AGG + chr2_4:53613028-53613047 Msa0334780:intron 30.0%
CTATCATAGTTTCGCAATTA+GGG + chr2_4:53613157-53613176 Msa0334780:intron 30.0%
CAACTATGCAATAGAAGAAA+AGG + chr2_4:53613222-53613241 Msa0334780:intron 30.0%
!! TGAATATGAGAGTATTACTC+TGG - chr2_4:53613340-53613359 None:intergenic 30.0%
AGCATAGCTTACATTCATAA+AGG - chr2_4:53613377-53613396 None:intergenic 30.0%
! ACAAATAAAAAAGGGTATGG+AGG - chr2_4:53613403-53613422 None:intergenic 30.0%
CGTACAAATAAAAAAGGGTA+TGG - chr2_4:53613406-53613425 None:intergenic 30.0%
TTGACTTAATTCAACCACTA+TGG + chr2_4:53613450-53613469 Msa0334780:intron 30.0%
TGACTTAATTCAACCACTAT+GGG + chr2_4:53613451-53613470 Msa0334780:intron 30.0%
TAGCAGATTACAGAAAATAG+TGG - chr2_4:53613535-53613554 None:intergenic 30.0%
TAAACAATCAGATTTCAGTC+TGG - chr2_4:53613626-53613645 None:intergenic 30.0%
!! TGTTTTTATTGGTGATATGC+AGG + chr2_4:53613723-53613742 Msa0334780:intron 30.0%
!! GTTTTTATTGGTGATATGCA+GGG + chr2_4:53613724-53613743 Msa0334780:intron 30.0%
CATAAGAAGACATCGTTTAT+AGG + chr2_4:53613989-53614008 Msa0334780:intron 30.0%
CACAAATTGCATGTTAAAGT+TGG + chr2_4:53614142-53614161 Msa0334780:CDS 30.0%
! ATAACCTTATTTATTTGCCC+TGG - chr2_4:53614307-53614326 None:intergenic 30.0%
!! TCTTTTCTCTAGAAACTTGA+GGG + chr2_4:53614504-53614523 Msa0334780:intron 30.0%
ATCACATTTGAACTGTGAAT+AGG - chr2_4:53614636-53614655 None:intergenic 30.0%
!! TGATTGATAGTGTAGAGAAT+TGG + chr2_4:53614751-53614770 Msa0334780:CDS 30.0%
!!! TGGATTTGTTTTTTGTCCTT+TGG + chr2_4:53614969-53614988 Msa0334780:three_prime_UTR 30.0%
!!! TGTTTTTTGTCCTTTGGTTT+TGG + chr2_4:53614975-53614994 Msa0334780:three_prime_UTR 30.0%
!!! CAAAGGATGTTTTGATTATC+AGG + chr2_4:53615074-53615093 Msa0334780:three_prime_UTR 30.0%
TTACCCTGTTACAACAACAA+TGG + chr2_4:53611502-53611521 Msa0334780:exon 35.0%
! CTACCATTGTTGTTGTAACA+GGG - chr2_4:53611508-53611527 None:intergenic 35.0%
TACAACAACAATGGTAGCTA+TGG + chr2_4:53611511-53611530 Msa0334780:exon 35.0%
AGTGTTAGAGAATGATGTAC+CGG - chr2_4:53611635-53611654 None:intergenic 35.0%
!! TTGCCAATGCTTTTGATTGA+AGG + chr2_4:53611947-53611966 Msa0334780:intron 35.0%
! ACACCTTCAATCAAAAGCAT+TGG - chr2_4:53611953-53611972 None:intergenic 35.0%
ACCAATGAATCAAAAACACG+CGG - chr2_4:53612029-53612048 None:intergenic 35.0%
! TGATCAGTGCTATTGGAATT+TGG + chr2_4:53612085-53612104 Msa0334780:intron 35.0%
ACATCTAGTGCATATGAAGA+AGG + chr2_4:53612216-53612235 Msa0334780:intron 35.0%
TATAAGGGCTTAGTTGGAAA+TGG - chr2_4:53612290-53612309 None:intergenic 35.0%
! TGTGTCGGTAAAATATGTTC+CGG - chr2_4:53612428-53612447 None:intergenic 35.0%
TGTAGGCTGATTGATCAAAA+GGG - chr2_4:53612621-53612640 None:intergenic 35.0%
TTGTAGGCTGATTGATCAAA+AGG - chr2_4:53612622-53612641 None:intergenic 35.0%
GATCAATCAGCCTACAAATT+CGG + chr2_4:53612625-53612644 Msa0334780:intron 35.0%
ATAACAGTGCTACAGCAAAA+TGG + chr2_4:53612711-53612730 Msa0334780:intron 35.0%
TAGACACAAATTATGGAAGG+AGG + chr2_4:53612850-53612869 Msa0334780:intron 35.0%
AGACACAAATTATGGAAGGA+GGG + chr2_4:53612851-53612870 Msa0334780:intron 35.0%
AAGATCAAGAGAGAGAGAAA+AGG + chr2_4:53612925-53612944 Msa0334780:intron 35.0%
GAGAAAAGGTAAGAAGATTG+AGG + chr2_4:53612939-53612958 Msa0334780:intron 35.0%
!! AGATAGACACATATTTTGGG+AGG + chr2_4:53612967-53612986 Msa0334780:intron 35.0%
AGAGAGATAGGCACAAATTA+TGG + chr2_4:53613040-53613059 Msa0334780:intron 35.0%
AGATAGGCACAAATTATGGA+AGG + chr2_4:53613044-53613063 Msa0334780:intron 35.0%
GATAGGCACAAATTATGGAA+GGG + chr2_4:53613045-53613064 Msa0334780:intron 35.0%
ATAGGCACAAATTATGGAAG+GGG + chr2_4:53613046-53613065 Msa0334780:intron 35.0%
GCTATCATAGTTTCGCAATT+AGG + chr2_4:53613156-53613175 Msa0334780:intron 35.0%
ATACGACATTGCTTATCTGT+CGG - chr2_4:53613754-53613773 None:intergenic 35.0%
AGCAATGTCGTATTGTAATG+AGG + chr2_4:53613761-53613780 Msa0334780:CDS 35.0%
GCAATGTCGTATTGTAATGA+GGG + chr2_4:53613762-53613781 Msa0334780:CDS 35.0%
AGAGTATGAAATGCCATTGA+TGG - chr2_4:53613911-53613930 None:intergenic 35.0%
!! TTTTCTGGTAGCTTAAACGA+TGG + chr2_4:53614080-53614099 Msa0334780:intron 35.0%
! TTTCTGGTAGCTTAAACGAT+GGG + chr2_4:53614081-53614100 Msa0334780:intron 35.0%
ACATGCAATTTGTGTAACAC+TGG - chr2_4:53614136-53614155 None:intergenic 35.0%
GATACTGTGAAAGTCATATC+AGG + chr2_4:53614166-53614185 Msa0334780:CDS 35.0%
AGTCATATCAGGACATGAAA+AGG + chr2_4:53614177-53614196 Msa0334780:CDS 35.0%
GTCATATCAGGACATGAAAA+GGG + chr2_4:53614178-53614197 Msa0334780:CDS 35.0%
AGAACCAGGGCAAATAAATA+AGG + chr2_4:53614300-53614319 Msa0334780:CDS 35.0%
! ATCCTTCCTGGAACAAATTT+TGG + chr2_4:53614437-53614456 Msa0334780:intron 35.0%
! ACTTGACCAAAATTTGTTCC+AGG - chr2_4:53614446-53614465 None:intergenic 35.0%
TTTACCTCTTGACCAAAGTT+TGG + chr2_4:53614470-53614489 Msa0334780:intron 35.0%
TAATCCAAACTTTGGTCAAG+AGG - chr2_4:53614477-53614496 None:intergenic 35.0%
! CTCAAGTTTCTAGAGAAAAG+AGG - chr2_4:53614505-53614524 None:intergenic 35.0%
!! CTCTTTTCTCTAGAAACTTG+AGG + chr2_4:53614503-53614522 Msa0334780:intron 35.0%
! CAATCTGAAATTCAAGGCAA+AGG - chr2_4:53614608-53614627 None:intergenic 35.0%
TGCCTTGAATTTCAGATTGA+AGG + chr2_4:53614609-53614628 Msa0334780:intron 35.0%
! GACCTTCAATCTGAAATTCA+AGG - chr2_4:53614614-53614633 None:intergenic 35.0%
CAAGAACTTTATGACCTACA+CGG - chr2_4:53614689-53614708 None:intergenic 35.0%
GGTCATAAAGTTCTTGACAA+TGG + chr2_4:53614693-53614712 Msa0334780:CDS 35.0%
AGAGAATTGGAAGAAACTGA+AGG + chr2_4:53614764-53614783 Msa0334780:CDS 35.0%
TTGTGTATGGAGATCAACAT+AGG - chr2_4:53614939-53614958 None:intergenic 35.0%
! CCAATTACTCAAGTTGTGTA+TGG - chr2_4:53614952-53614971 None:intergenic 35.0%
CCATACACAACTTGAGTAAT+TGG + chr2_4:53614949-53614968 Msa0334780:three_prime_UTR 35.0%
AACTCTCAATGTAGACTTGT+TGG + chr2_4:53615042-53615061 Msa0334780:three_prime_UTR 35.0%
! GCTACCATTGTTGTTGTAAC+AGG - chr2_4:53611509-53611528 None:intergenic 40.0%
AACAATGGTAGCTATGGCTA+TGG + chr2_4:53611517-53611536 Msa0334780:exon 40.0%
CTCTCTTCCAACTCTTTCTT+CGG + chr2_4:53611572-53611591 Msa0334780:CDS 40.0%
! GGCACGACAATATAACTTGT+TGG - chr2_4:53612008-53612027 None:intergenic 40.0%
TGTAGCATGATCAGTGCTAT+TGG + chr2_4:53612078-53612097 Msa0334780:intron 40.0%
AAATTATGGAAGGAGGGAGA+AGG + chr2_4:53612857-53612876 Msa0334780:intron 40.0%
!! AGACACATATTTTGGGAGGA+AGG + chr2_4:53612971-53612990 Msa0334780:intron 40.0%
!! ATATTTTGGGAGGAAGGAGA+TGG + chr2_4:53612977-53612996 Msa0334780:intron 40.0%
TAGGCACAAATTATGGAAGG+GGG + chr2_4:53613047-53613066 Msa0334780:intron 40.0%
AAATTATGGAAGGGGGTAGA+AGG + chr2_4:53613054-53613073 Msa0334780:intron 40.0%
TTTCGCAATTAGGGCAATAG+AGG + chr2_4:53613166-53613185 Msa0334780:intron 40.0%
AAATAGCTGAACTCCCATAG+TGG - chr2_4:53613467-53613486 None:intergenic 40.0%
GCAATTTGTGTAACACTGGA+AGG - chr2_4:53614132-53614151 None:intergenic 40.0%
CATGTGAAGAGTAGAGAAGA+GGG + chr2_4:53614277-53614296 Msa0334780:CDS 40.0%
ATAACATTCTCCTTCGCTTG+AGG + chr2_4:53614400-53614419 Msa0334780:intron 40.0%
TAACATTCTCCTTCGCTTGA+GGG + chr2_4:53614401-53614420 Msa0334780:intron 40.0%
! GACCAAAATTTGTTCCAGGA+AGG - chr2_4:53614442-53614461 None:intergenic 40.0%
AGGCATGGTAATCCAAACTT+TGG - chr2_4:53614485-53614504 None:intergenic 40.0%
! GTTTCTAGAGAAAAGAGGCA+TGG - chr2_4:53614500-53614519 None:intergenic 40.0%
TCAAAACATCCTTTGTCGGA+AGG - chr2_4:53615069-53615088 None:intergenic 40.0%
GAAGCAGAAGCAAGAAGAAG+AGG + chr2_4:53611479-53611498 Msa0334780:five_prime_UTR 45.0%
AGAAGAGGAGAGAGAGTGAT+GGG - chr2_4:53611611-53611630 None:intergenic 45.0%
AAGAAGAGGAGAGAGAGTGA+TGG - chr2_4:53611612-53611631 None:intergenic 45.0%
GAATGATGTACCGGAAGAAG+AGG - chr2_4:53611626-53611645 None:intergenic 45.0%
!! GCCGCGTGTTTTTGATTCAT+TGG + chr2_4:53612025-53612044 Msa0334780:intron 45.0%
TTGCTTAGTGCTTGCCTATC+TGG + chr2_4:53612338-53612357 Msa0334780:intron 45.0%
TCTGCAGCACCAAAATTCAC+CGG - chr2_4:53612535-53612554 None:intergenic 45.0%
GCTAGCAGAAACTAGAACAG+CGG - chr2_4:53613192-53613211 None:intergenic 45.0%
TGTAACACTGGAAGGCTGTT+TGG - chr2_4:53614124-53614143 None:intergenic 45.0%
GGACATGAAAAGGGTCAAGT+CGG + chr2_4:53614187-53614206 Msa0334780:CDS 45.0%
GACATGAAAAGGGTCAAGTC+GGG + chr2_4:53614188-53614207 Msa0334780:CDS 45.0%
ACATGAAAAGGGTCAAGTCG+GGG + chr2_4:53614189-53614208 Msa0334780:CDS 45.0%
GCATGTGAAGAGTAGAGAAG+AGG + chr2_4:53614276-53614295 Msa0334780:CDS 45.0%
AGAGAGTGAGAGTGAGGTCA+TGG - chr2_4:53611558-53611577 None:intergenic 50.0%
GTTGGAAGAGAGTGAGAGTG+AGG - chr2_4:53611564-53611583 None:intergenic 50.0%
AGGCTGTCCGAAGAAAGAGT+TGG - chr2_4:53611582-53611601 None:intergenic 50.0%
CACTCTCTCTCCTCTTCTTC+CGG + chr2_4:53611613-53611632 Msa0334780:CDS 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG - chr2_4:53612771-53612790 None:intergenic 50.0%
AAGGAGAGAGTGAGTGGAAG+TGG + chr2_4:53612876-53612895 Msa0334780:intron 50.0%
GGAAGGAGATGGAGAGTGAT+TGG + chr2_4:53612988-53613007 Msa0334780:intron 50.0%
GGAGATGGAGAGTGATTGGA+AGG + chr2_4:53612992-53613011 Msa0334780:intron 50.0%
ATAACCGTGTAGCGCAGATC+CGG - chr2_4:53613087-53613106 None:intergenic 50.0%
GCTTAAACGATGGGAGCGAA+AGG + chr2_4:53614090-53614109 Msa0334780:intron 50.0%
AGTAGAGAAGAGGGAGAACC+AGG + chr2_4:53614286-53614305 Msa0334780:CDS 50.0%
GTAGAGAAGAGGGAGAACCA+GGG + chr2_4:53614287-53614306 Msa0334780:CDS 50.0%
ACTCGAGTTCGAATCCTTCC+TGG + chr2_4:53614425-53614444 Msa0334780:intron 50.0%
AAGAATGTCGCAAGCCGTGT+AGG + chr2_4:53614672-53614691 Msa0334780:CDS 50.0%
CTTGTTGGTCCTTCCGACAA+AGG + chr2_4:53615057-53615076 Msa0334780:three_prime_UTR 50.0%
! GAGAGAGTGATGGGAGAGAG+AGG - chr2_4:53611602-53611621 None:intergenic 55.0%
AGGGAGAAGGAGAGAGTGAG+TGG + chr2_4:53612870-53612889 Msa0334780:intron 55.0%
GAGAGAGTGAGTGGAAGTGG+AGG + chr2_4:53612879-53612898 Msa0334780:intron 55.0%
GTGAGTGGAAGTGGAGGATC+TGG + chr2_4:53612885-53612904 Msa0334780:intron 55.0%
ATGGAAGGGGGTAGAAGGAG+AGG + chr2_4:53613059-53613078 Msa0334780:intron 55.0%
TGAAAAGGGTCAAGTCGGGG+AGG + chr2_4:53614192-53614211 Msa0334780:CDS 55.0%
ACTCGAGTTCCCTCAAGCGA+AGG - chr2_4:53614413-53614432 None:intergenic 55.0%
GGGGGTAGAAGGAGAGGATC+CGG + chr2_4:53613065-53613084 Msa0334780:intron 60.0%
GGATCCGGATCTGCGCTACA+CGG + chr2_4:53613080-53613099 Msa0334780:intron 60.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 53611450 53615139 53611450 ID=Msa0334780;Name=Msa0334780
chr2_4 mRNA 53611450 53615139 53611450 ID=Msa0334780-mRNA-1;Parent=Msa0334780;Name=Msa0334780-mRNA-1;_AED=0.01;_eAED=0.01;_QI=71|1|1|1|1|1|4|315|194
chr2_4 exon 53611450 53611634 53611450 ID=Msa0334780-mRNA-1:exon:16168;Parent=Msa0334780-mRNA-1
chr2_4 exon 53613745 53613783 53613745 ID=Msa0334780-mRNA-1:exon:16169;Parent=Msa0334780-mRNA-1
chr2_4 exon 53614091 53614321 53614091 ID=Msa0334780-mRNA-1:exon:16170;Parent=Msa0334780-mRNA-1
chr2_4 exon 53614624 53615139 53614624 ID=Msa0334780-mRNA-1:exon:16171;Parent=Msa0334780-mRNA-1
chr2_4 five_prime_UTR 53611450 53611520 53611450 ID=Msa0334780-mRNA-1:five_prime_utr;Parent=Msa0334780-mRNA-1
chr2_4 CDS 53611521 53611634 53611521 ID=Msa0334780-mRNA-1:cds;Parent=Msa0334780-mRNA-1
chr2_4 CDS 53613745 53613783 53613745 ID=Msa0334780-mRNA-1:cds;Parent=Msa0334780-mRNA-1
chr2_4 CDS 53614091 53614321 53614091 ID=Msa0334780-mRNA-1:cds;Parent=Msa0334780-mRNA-1
chr2_4 CDS 53614624 53614824 53614624 ID=Msa0334780-mRNA-1:cds;Parent=Msa0334780-mRNA-1
chr2_4 three_prime_UTR 53614825 53615139 53614825 ID=Msa0334780-mRNA-1:three_prime_utr;Parent=Msa0334780-mRNA-1
Gene Sequence

>Msa0334780

ATGGTAGCTATGGCTATGGCTTCTCTTCAGAGTTCCATGACCTCACTCTCACTCTCTTCCAACTCTTTCTTCGGACAGCCTCTCTCTCCCATCACTCTCTCTCCTCTTCTTCCGGGTAAGCCGACAGATAAGCAATGTCGTATTGTAATGAGGCTTAAACGATGGGAGCGAAAGGAATGTAAACCAAACAGCCTTCCAGTGTTACACAAATTGCATGTTAAAGTTGGAGATACTGTGAAAGTCATATCAGGACATGAAAAGGGTCAAGTCGGGGAGGTTACTAAGATCTTCAAGCACAACAGCACTATCATTGTCAAAGACATAAACTTGAAGACAAAGCATGTGAAGAGTAGAGAAGAGGGAGAACCAGGGCAAATAAATAAGATTGAAGGTCCTATTCACAGTTCAAATGTGATGCTCTACTCTAAAGAAAAGAATGTCGCAAGCCGTGTAGGTCATAAAGTTCTTGACAATGGTAAAAAAGTTCGCTATTTAATAAAAACTGGAGAGGTGATTGATAGTGTAGAGAATTGGAAGAAACTGAAGGAAGCTACTAAAAAAACTGAAGAAGTTGTTGCTGCCTAG

Protein sequence

>Msa0334780

MVAMAMASLQSSMTSLSLSSNSFFGQPLSPITLSPLLPGKPTDKQCRIVMRLKRWERKECKPNSLPVLHKLHVKVGDTVKVISGHEKGQVGEVTKIFKHNSTIIVKDINLKTKHVKSREEGEPGQINKIEGPIHSSNVMLYSKEKNVASRVGHKVLDNGKKVRYLIKTGEVIDSVENWKKLKEATKKTEEVVAA*