AlfalfaGEDB | Msa1003120

M. sativa cultivar zhongmu-4 / Msa1003120

KEGG: K14488
GO: -
PFAM: PF02519.17

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1003120	XP_013447781.1	95.783	166	3	1	1	166	1	162	2.62e-112	326

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1003120	sp\|Q9SGU2\|SAU71_ARATH	46.479	71	38	0	61	131	28	98	9.66e-17	74.7

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1003120	I3T7S1	95.783	166	3	1	1	166	1	162	1.25e-112	326

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0038010	Msa1003120	0.809678	1.680469e-50	-8.615850e-47
Msa0043840	Msa1003120	0.809729	1.638622e-50	-8.615850e-47
Msa0059880	Msa1003120	0.801241	9.880628e-49	-8.615850e-47
Msa0085710	Msa1003120	0.802639	5.099217e-49	-8.615850e-47
Msa0090500	Msa1003120	0.802449	5.581893e-49	-8.615850e-47
Msa0096860	Msa1003120	0.814386	1.581626e-51	-8.615850e-47
Msa0622890	Msa1003120	0.819478	1.137309e-52	-8.615850e-47
Msa0641700	Msa1003120	0.822448	2.356238e-53	-8.615850e-47
Msa0655370	Msa1003120	0.811518	6.725865e-51	-8.615850e-47
Msa0666580	Msa1003120	0.800293	1.542841e-48	-8.615850e-47
Msa0689840	Msa1003120	0.820457	6.792303e-53	-8.615850e-47
Msa0711240	Msa1003120	0.810015	1.422041e-50	-8.615850e-47
Msa0716600	Msa1003120	0.812212	4.748463e-51	-8.615850e-47
Msa0728520	Msa1003120	0.808970	2.384259e-50	-8.615850e-47
Msa0735340	Msa1003120	0.825219	5.282006e-54	-8.615850e-47
Msa0750830	Msa1003120	0.812547	4.013104e-51	-8.615850e-47
Msa0753410	Msa1003120	0.825139	5.516531e-54	-8.615850e-47
Msa0756570	Msa1003120	0.822834	1.915747e-53	-8.615850e-47
Msa0758000	Msa1003120	0.802526	5.379580e-49	-8.615850e-47
Msa0758150	Msa1003120	0.805512	1.288300e-49	-8.615850e-47
Msa0776540	Msa1003120	0.810517	1.108302e-50	-8.615850e-47
Msa0777210	Msa1003120	0.805305	1.423575e-49	-8.615850e-47
Msa0795330	Msa1003120	0.821485	3.937225e-53	-8.615850e-47
Msa0814350	Msa1003120	0.811191	7.922110e-51	-8.615850e-47
Msa0817100	Msa1003120	0.806395	8.401200e-50	-8.615850e-47
Msa0819110	Msa1003120	0.803220	3.867603e-49	-8.615850e-47
Msa0129270	Msa1003120	0.805302	1.425087e-49	-8.615850e-47
Msa0132250	Msa1003120	0.807928	3.977331e-50	-8.615850e-47
Msa0137970	Msa1003120	0.807395	5.161225e-50	-8.615850e-47
Msa0154750	Msa1003120	0.810420	1.163097e-50	-8.615850e-47
Msa0183920	Msa1003120	0.803736	3.023690e-49	-8.615850e-47
Msa0375550	Msa1003120	0.802642	5.092671e-49	-8.615850e-47
Msa0424240	Msa1003120	0.806934	6.462045e-50	-8.615850e-47
Msa0478400	Msa1003120	0.809675	1.682712e-50	-8.615850e-47
Msa0987550	Msa1003120	0.826117	3.234428e-54	-8.615850e-47
Msa1003120	Msa1036590	0.801994	6.923937e-49	-8.615850e-47
Msa1003120	Msa1046220	0.824776	6.721243e-54	-8.615850e-47
Msa1003120	Msa1047300	0.806302	8.786358e-50	-8.615850e-47
Msa1003120	Msa1047340	0.805189	1.505082e-49	-8.615850e-47
Msa1003120	Msa1076900	0.805324	1.410488e-49	-8.615850e-47
Msa1003120	Msa1085820	0.804324	2.281883e-49	-8.615850e-47
Msa1003120	Msa1090990	0.971400	4.190844e-133	-8.615850e-47
Msa1003120	Msa1100330	0.800739	1.251309e-48	-8.615850e-47
Msa1003120	Msa1133850	0.986779	6.104219e-168	-8.615850e-47
Msa1003120	Msa1191270	0.800965	1.125200e-48	-8.615850e-47
Msa1003120	Msa1211320	0.820629	6.201459e-53	-8.615850e-47
Msa1003120	Msa1259570	0.810830	9.481417e-51	-8.615850e-47
Msa1003120	Msa1335500	0.817645	2.961353e-52	-8.615850e-47
Msa1003120	Msa1357840	0.803522	3.348417e-49	-8.615850e-47
Msa1003120	Msa1364690	0.803742	3.014745e-49	-8.615850e-47
Msa1003120	Msa1376520	0.807639	4.580738e-50	-8.615850e-47
Msa1003120	Msa1377190	0.822552	2.228337e-53	-8.615850e-47
Msa1003120	Msa1377460	0.807001	6.255999e-50	-8.615850e-47
Msa1003120	Msa1378950	0.804800	1.815112e-49	-8.615850e-47
Msa1003120	Msa1379250	0.802308	5.968266e-49	-8.615850e-47
Msa1003120	Msa1409060	0.813629	2.323912e-51	-8.615850e-47
Msa1003120	Msa1445780	0.821550	3.804767e-53	-8.615850e-47
Msa0240580	Msa1003120	0.806646	7.436442e-50	-8.615850e-47
Msa0245660	Msa1003120	0.819016	1.448741e-52	-8.615850e-47
Msa0336640	Msa1003120	0.810953	8.921660e-51	-8.615850e-47
Msa0538520	Msa1003120	0.800400	1.466790e-48	-8.615850e-47
Msa0538650	Msa1003120	0.807919	3.994294e-50	-8.615850e-47
Msa0568920	Msa1003120	0.808105	3.647702e-50	-8.615850e-47
Msa0863840	Msa1003120	0.818923	1.521161e-52	-8.615850e-47
Msa0863850	Msa1003120	0.809439	1.891298e-50	-8.615850e-47
Msa0868820	Msa1003120	0.814782	1.293127e-51	-8.615850e-47
Msa0874750	Msa1003120	0.805928	1.053150e-49	-8.615850e-47
Msa0886370	Msa1003120	0.805176	1.514428e-49	-8.615850e-47
Msa0896920	Msa1003120	0.802381	5.764512e-49	-8.615850e-47
Msa0902340	Msa1003120	0.814957	1.182087e-51	-8.615850e-47
Msa0910590	Msa1003120	0.822460	2.340702e-53	-8.615850e-47
Msa0910830	Msa1003120	0.800640	1.311041e-48	-8.615850e-47
Msa0913500	Msa1003120	0.833794	4.345753e-56	-8.615850e-47
Msa0931370	Msa1003120	0.801227	9.944564e-49	-8.615850e-47
Msa0932890	Msa1003120	0.800009	1.761882e-48	-8.615850e-47
Msa0948430	Msa1003120	0.820108	8.163192e-53	-8.615850e-47
Msa0951060	Msa1003120	0.810639	1.043128e-50	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1003120	MtrunA17_Chr7g0214201	95.783	166	3	1	1	166	1	162	2.41e-116	326
Msa1003120	MtrunA17_Chr3g0131991	47.692	130	56	3	7	136	1	118	2.56e-31	110
Msa1003120	MtrunA17_Chr8g0386111	45.455	110	53	2	43	145	14	123	7.22e-26	96.3
Msa1003120	MtrunA17_Chr8g0386131	54.430	79	32	1	71	145	49	127	3.62e-24	92.4
Msa1003120	MtrunA17_Chr8g0386121	54.688	64	29	0	72	135	47	110	7.03e-21	82.4
Msa1003120	MtrunA17_Chr4g0036141	51.562	64	31	0	71	134	37	100	1.66e-17	74.3
Msa1003120	MtrunA17_Chr3g0127561	43.373	83	45	1	57	137	19	101	4.15e-17	72.8
Msa1003120	MtrunA17_Chr4g0070071	46.970	66	35	0	71	136	69	134	8.50e-17	73.2
Msa1003120	MtrunA17_Chr2g0311341	42.391	92	40	1	40	131	40	118	1.10e-16	72.4
Msa1003120	MtrunA17_Chr2g0301531	42.254	71	41	0	71	141	76	146	1.83e-16	72.4
Msa1003120	MtrunA17_Chr3g0139171	35.461	141	73	4	15	146	15	146	3.41e-16	72.0
Msa1003120	MtrunA17_Chr8g0358871	50.769	65	32	0	67	131	31	95	6.40e-16	69.7
Msa1003120	MtrunA17_Chr3g0121801	41.667	84	44	2	47	129	5	84	1.02e-15	68.6
Msa1003120	MtrunA17_Chr7g0266581	41.667	72	38	1	74	145	53	120	1.64e-15	68.9
Msa1003120	MtrunA17_Chr1g0156341	39.744	78	47	0	65	142	31	108	2.14e-15	69.3
Msa1003120	MtrunA17_Chr3g0145401	40.000	95	51	3	38	130	15	105	4.93e-15	67.4
Msa1003120	MtrunA17_Chr1g0178451	41.096	73	43	0	63	135	41	113	7.31e-15	67.4
Msa1003120	MtrunA17_Chr7g0276101	43.478	69	37	1	71	137	23	91	2.60e-14	65.1
Msa1003120	MtrunA17_Chr4g0000251	36.620	71	45	0	70	140	69	139	3.46e-14	66.2
Msa1003120	MtrunA17_Chr7g0266571	43.548	62	35	0	74	135	53	114	7.87e-14	64.7
Msa1003120	MtrunA17_Chr4g0036711	43.056	72	40	1	66	136	10	81	8.86e-14	63.2
Msa1003120	MtrunA17_Chr4g0036561	39.474	76	45	1	56	130	5	80	1.56e-13	62.8
Msa1003120	MtrunA17_Chr3g0121721	40.000	85	46	2	47	130	5	85	1.59e-13	62.8
Msa1003120	MtrunA17_Chr3g0121731	37.647	85	48	2	47	130	5	85	1.79e-13	62.8
Msa1003120	MtrunA17_Chr3g0121701	37.647	85	48	2	47	130	5	85	1.97e-13	62.8
Msa1003120	MtrunA17_Chr1g0147571	40.909	66	39	0	71	136	104	169	3.65e-13	64.7
Msa1003120	MtrunA17_Chr4g0036181	43.056	72	40	1	57	127	69	140	4.10e-13	63.2
Msa1003120	MtrunA17_Chr3g0130911	40.000	85	42	2	63	139	2	85	4.90e-13	62.0
Msa1003120	MtrunA17_Chr8g0358971	47.541	61	31	1	71	130	25	85	5.64e-13	61.2
Msa1003120	MtrunA17_Chr1g0179511	39.062	64	39	0	71	134	19	82	6.02e-13	62.4
Msa1003120	MtrunA17_Chr8g0346181	41.975	81	41	3	69	143	25	105	6.85e-13	61.6
Msa1003120	MtrunA17_Chr4g0036531	42.424	66	37	1	71	135	25	90	7.35e-13	61.2
Msa1003120	MtrunA17_Chr8g0358981	37.647	85	48	2	47	130	5	85	7.84e-13	61.2
Msa1003120	MtrunA17_Chr8g0359011	50.000	58	28	1	71	127	3	60	8.00e-13	60.5
Msa1003120	MtrunA17_Chr7g0264401	47.541	61	32	0	71	131	40	100	9.15e-13	61.6
Msa1003120	MtrunA17_Chr2g0281291	50.769	65	29	2	69	130	22	86	9.42e-13	60.8
Msa1003120	MtrunA17_Chr1g0199531	46.032	63	34	0	69	131	48	110	1.18e-12	61.2
Msa1003120	MtrunA17_Chr4g0036751	38.158	76	46	1	56	130	5	80	1.88e-12	60.1
Msa1003120	MtrunA17_Chr4g0036461	45.902	61	32	1	71	130	25	85	2.10e-12	60.1
Msa1003120	MtrunA17_Chr4g0036611	47.541	61	31	1	71	130	25	85	2.47e-12	59.7
Msa1003120	MtrunA17_Chr4g0036271	42.424	66	37	1	71	135	23	88	2.61e-12	59.7
Msa1003120	MtrunA17_Chr4g0036211	36.047	86	54	1	57	141	150	235	3.09e-12	62.8
Msa1003120	MtrunA17_Chr4g0036201	37.500	80	49	1	57	135	12	91	4.85e-12	58.9
Msa1003120	MtrunA17_Chr3g0121761	49.153	59	27	2	71	127	25	82	5.89e-12	58.9
Msa1003120	MtrunA17_Chr4g0036841	48.276	58	29	1	71	127	35	92	5.97e-12	58.9
Msa1003120	MtrunA17_Chr4g0036831	38.667	75	45	1	57	130	12	86	6.46e-12	58.5
Msa1003120	MtrunA17_Chr4g0036811	40.909	66	38	1	71	135	26	91	7.03e-12	58.5
Msa1003120	MtrunA17_Chr4g0011821	37.662	77	45	1	71	144	79	155	7.64e-12	60.1
Msa1003120	MtrunA17_Chr7g0264551	38.889	72	42	1	62	131	43	114	1.13e-11	58.9
Msa1003120	MtrunA17_Chr3g0139711	36.471	85	50	2	47	130	5	86	1.41e-11	57.8
Msa1003120	MtrunA17_Chr4g0036571	36.559	93	54	3	42	130	29	120	1.61e-11	58.5
Msa1003120	MtrunA17_Chr3g0121781	47.458	59	28	2	71	127	25	82	1.70e-11	57.4
Msa1003120	MtrunA17_Chr8g0358991	47.458	59	28	2	71	127	25	82	1.83e-11	57.4
Msa1003120	MtrunA17_Chr3g0139701	37.647	85	48	2	47	130	63	143	2.25e-11	58.5
Msa1003120	MtrunA17_Chr4g0036221	47.541	61	30	2	71	130	26	85	2.54e-11	57.0
Msa1003120	MtrunA17_Chr4g0036801	45.902	61	32	1	71	130	26	86	2.63e-11	57.0
Msa1003120	MtrunA17_Chr4g0036491	45.902	61	32	1	71	130	25	85	2.99e-11	57.0
Msa1003120	MtrunA17_Chr1g0181011	32.500	120	54	2	14	131	55	149	3.68e-11	58.5
Msa1003120	MtrunA17_Chr3g0121741	45.763	59	29	2	71	127	25	82	4.31e-11	56.6
Msa1003120	MtrunA17_Chr4g0036191	48.333	60	28	2	72	130	27	84	4.68e-11	56.2
Msa1003120	MtrunA17_Chr3g0121711	45.763	59	29	2	71	127	25	82	5.85e-11	56.2
Msa1003120	MtrunA17_Chr4g0036581	45.763	59	31	1	73	130	27	85	5.85e-11	56.2
Msa1003120	MtrunA17_Chr4g0036541	36.842	76	47	1	56	130	5	80	6.29e-11	55.8
Msa1003120	MtrunA17_Chr4g0036431	37.975	79	43	2	58	130	7	85	6.57e-11	55.8
Msa1003120	MtrunA17_Chr4g0036401	33.721	86	51	2	56	135	5	90	7.54e-11	55.8
Msa1003120	MtrunA17_Chr4g0036761	44.262	61	33	1	71	130	23	83	7.83e-11	55.8
Msa1003120	MtrunA17_Chr8g0385011	36.471	85	48	2	54	138	5	83	8.36e-11	56.2
Msa1003120	MtrunA17_Chr4g0036821	39.394	66	39	1	71	135	26	91	8.40e-11	55.8
Msa1003120	MtrunA17_Chr4g0036691	36.842	76	47	1	56	130	5	80	8.49e-11	55.5
Msa1003120	MtrunA17_Chr4g0036651	34.524	84	49	2	58	135	7	90	8.56e-11	55.8

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1003120	AT5G50760.1	43.966	116	63	1	19	134	5	118	5.53e-24	92.8
Msa1003120	AT1G56150.1	46.479	71	38	0	61	131	28	98	9.82e-18	74.7
Msa1003120	AT5G20810.1	48.485	66	34	0	71	136	79	144	1.87e-17	75.5
Msa1003120	AT5G20810.2	48.485	66	34	0	71	136	79	144	2.70e-17	75.5
Msa1003120	AT3G43120.1	46.970	66	35	0	71	136	79	144	6.04e-17	73.9
Msa1003120	AT3G12830.1	40.206	97	54	1	39	131	14	110	6.97e-16	70.5
Msa1003120	AT1G16510.1	46.970	66	35	0	66	131	49	114	1.71e-15	69.7
Msa1003120	AT2G46690.1	44.444	72	37	1	69	137	22	93	2.21e-15	68.9
Msa1003120	AT3G61900.1	40.230	87	40	2	69	143	28	114	2.92e-15	68.9
Msa1003120	AT4G00880.1	42.169	83	44	2	57	137	16	96	1.43e-14	66.6
Msa1003120	AT4G34750.2	42.623	61	35	0	71	131	37	97	2.19e-14	67.0
Msa1003120	AT4G34750.1	42.623	61	35	0	71	131	37	97	2.19e-14	67.0
Msa1003120	AT1G75590.1	47.368	57	30	0	71	127	42	98	1.05e-13	65.5
Msa1003120	AT5G10990.1	36.735	98	58	2	32	127	2	97	1.30e-13	65.1
Msa1003120	AT5G53590.1	41.096	73	38	1	71	138	46	118	2.72e-13	63.9
Msa1003120	AT1G79130.1	36.275	102	52	2	33	134	23	111	2.80e-13	63.5
Msa1003120	AT2G24400.1	41.379	87	49	1	53	137	46	132	1.72e-12	62.8
Msa1003120	AT1G19840.1	42.623	61	35	0	71	131	41	101	2.42e-12	61.6
Msa1003120	AT4G31320.1	41.250	80	42	2	72	146	81	160	3.84e-12	62.0
Msa1003120	AT3G20220.1	41.270	63	36	1	71	132	47	109	1.09e-11	58.9
Msa1003120	AT4G34760.1	27.273	121	63	2	7	127	4	99	1.40e-11	58.5
Msa1003120	AT2G37030.1	42.623	61	35	0	71	131	49	109	1.77e-11	58.5
Msa1003120	AT3G60690.1	38.542	96	52	3	59	149	74	167	2.08e-11	59.7
Msa1003120	AT5G66260.1	37.879	66	40	1	71	136	34	98	3.96e-11	57.0
Msa1003120	AT3G51200.1	40.323	62	37	0	70	131	39	100	6.39e-11	56.6

Find 41 sgRNAs with CRISPR-Local

Find 52 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ATCATCTTCTTAGCCCTTCC+AGG	0.273002	7_1:+176024	Msa1003120:CDS
CCTTCCCAAGGTTGTACTTT+TGG	0.273068	7_1:+175984	Msa1003120:CDS
ATCACAAACCTTTGCATTTG+AGG	0.328411	7_1:-175813	None:intergenic
GGAAAAGGGAACAAGAAAAT+AGG	0.347522	7_1:+175597	Msa1003120:CDS
GAAGAAGCTGAATCAGAATA+TGG	0.364921	7_1:+175879	Msa1003120:CDS
TTACAAAGTGTTGATGGAAA+TGG	0.371199	7_1:+175950	Msa1003120:CDS
TTATAGCTGCCAAGGACCTT+TGG	0.404368	7_1:+175902	Msa1003120:CDS
AAGAACATGAAGCAAGGAAA+AGG	0.428717	7_1:+175582	Msa1003120:CDS
GATTTGCTCCTTCTTGTCGT+TGG	0.461730	7_1:-175711	None:intergenic
GTTGTTTAAAACAATCATCC+TGG	0.485523	7_1:-176042	None:intergenic
AGAAAATAGACGAAAGAAAG+TGG	0.505985	7_1:+175758	Msa1003120:CDS
TAAAAGACATCAACATTACA+AGG	0.510903	7_1:-175930	None:intergenic
AGAACATGAAGCAAGGAAAA+GGG	0.512113	7_1:+175583	Msa1003120:CDS
TGCAAGTCCATAGGAGGAGG+AGG	0.512745	7_1:+175645	Msa1003120:CDS
ATCATGGCCTAGTCTTCCGC+GGG	0.516084	7_1:+175731	Msa1003120:CDS
AAGGAAGAGCCAAAGGTCCT+TGG	0.517712	7_1:-175911	None:intergenic
CGACAAGAAGGAGCAAATCA+TGG	0.519386	7_1:+175715	Msa1003120:CDS
TAGACGAAAGAAAGTGGCCC+CGG	0.522285	7_1:+175764	Msa1003120:CDS
ACACCGAAAAGCATCCCTCC+GGG	0.524201	7_1:-175782	None:intergenic
TTTAAAACAATCATCCTGGA+AGG	0.525683	7_1:-176038	None:intergenic
TCAAGCAACATCTTGAACAA+AGG	0.532123	7_1:-175858	None:intergenic
ACGACCAAAAGTACAACCTT+GGG	0.533998	7_1:-175988	None:intergenic
CGAAAGAAAGTGGCCCCGGA+GGG	0.535522	7_1:+175768	Msa1003120:CDS
AACGACCAAAAGTACAACCT+TGG	0.538821	7_1:-175989	None:intergenic
AGATGCAAGTCCATAGGAGG+AGG	0.541895	7_1:+175642	Msa1003120:CDS
TACACCGAAAAGCATCCCTC+CGG	0.548704	7_1:-175783	None:intergenic
AAGTCCATAGGAGGAGGAGG+AGG	0.549753	7_1:+175648	Msa1003120:CDS
GAATATGGTTATAGCTGCCA+AGG	0.552741	7_1:+175894	Msa1003120:CDS
CAGTGATTCCAACGACAAGA+AGG	0.563887	7_1:+175703	Msa1003120:CDS
TTAAAACAATCATCCTGGAA+GGG	0.592351	7_1:-176037	None:intergenic
TGGGAGAGATGCAAGTCCAT+AGG	0.597578	7_1:+175636	Msa1003120:CDS
AATCATGGCCTAGTCTTCCG+CGG	0.600149	7_1:+175730	Msa1003120:CDS
GAGAGATGCAAGTCCATAGG+AGG	0.601664	7_1:+175639	Msa1003120:CDS
GATAATGAAGCTCCTTCCCA+AGG	0.617597	7_1:+175972	Msa1003120:CDS
ACATTACAAGGAAGAGCCAA+AGG	0.626356	7_1:-175918	None:intergenic
ACGTTGGACCTCAAATGCAA+AGG	0.634178	7_1:+175805	Msa1003120:CDS
ATTGGCAAGAACATGAAGCA+AGG	0.634830	7_1:+175576	Msa1003120:CDS
ACGAAAGAAAGTGGCCCCGG+AGG	0.651502	7_1:+175767	Msa1003120:CDS
CCAAAAGTACAACCTTGGGA+AGG	0.674764	7_1:-175984	None:intergenic
CACCGAAAAGCATCCCTCCG+GGG	0.706013	7_1:-175781	None:intergenic
TCATGGCCTAGTCTTCCGCG+GGG	0.775767	7_1:+175732	Msa1003120:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!	TAAAAGACATCAACATTACA+AGG	-	chr7_1:175933-175952	None:intergenic	25.0%
	AGAAAATAGACGAAAGAAAG+TGG	+	chr7_1:175758-175777	Msa1003120:CDS	30.0%
!!!	TGTCTTTTACAAAGTGTTGA+TGG	+	chr7_1:175944-175963	Msa1003120:CDS	30.0%
!!	TTACAAAGTGTTGATGGAAA+TGG	+	chr7_1:175950-175969	Msa1003120:CDS	30.0%
	TTAAAACAATCATCCTGGAA+GGG	-	chr7_1:176040-176059	None:intergenic	30.0%
!	TTTAAAACAATCATCCTGGA+AGG	-	chr7_1:176041-176060	None:intergenic	30.0%
!	GTTGTTTAAAACAATCATCC+TGG	-	chr7_1:176045-176064	None:intergenic	30.0%
	AAGAACATGAAGCAAGGAAA+AGG	+	chr7_1:175582-175601	Msa1003120:CDS	35.0%
	AGAACATGAAGCAAGGAAAA+GGG	+	chr7_1:175583-175602	Msa1003120:CDS	35.0%
	GGAAAAGGGAACAAGAAAAT+AGG	+	chr7_1:175597-175616	Msa1003120:CDS	35.0%
	ATCACAAACCTTTGCATTTG+AGG	-	chr7_1:175816-175835	None:intergenic	35.0%
	TCAAGCAACATCTTGAACAA+AGG	-	chr7_1:175861-175880	None:intergenic	35.0%
	GAAGAAGCTGAATCAGAATA+TGG	+	chr7_1:175879-175898	Msa1003120:CDS	35.0%
	ATTGGCAAGAACATGAAGCA+AGG	+	chr7_1:175576-175595	Msa1003120:CDS	40.0%
	GAATATGGTTATAGCTGCCA+AGG	+	chr7_1:175894-175913	Msa1003120:CDS	40.0%
	ACATTACAAGGAAGAGCCAA+AGG	-	chr7_1:175921-175940	None:intergenic	40.0%
!	ACGACCAAAAGTACAACCTT+GGG	-	chr7_1:175991-176010	None:intergenic	40.0%
!	AACGACCAAAAGTACAACCT+TGG	-	chr7_1:175992-176011	None:intergenic	40.0%
	TAGGCCTCATCACAAAAACG+TGG	+	chr7_1:175616-175635	Msa1003120:CDS	45.0%
	AGGCCTCATCACAAAAACGT+GGG	+	chr7_1:175617-175636	Msa1003120:CDS	45.0%
!	TCTCCCACGTTTTTGTGATG+AGG	-	chr7_1:175623-175642	None:intergenic	45.0%
	CAGTGATTCCAACGACAAGA+AGG	+	chr7_1:175703-175722	Msa1003120:CDS	45.0%
!	GATTTGCTCCTTCTTGTCGT+TGG	-	chr7_1:175714-175733	None:intergenic	45.0%
	CGACAAGAAGGAGCAAATCA+TGG	+	chr7_1:175715-175734	Msa1003120:CDS	45.0%
	ACGTTGGACCTCAAATGCAA+AGG	+	chr7_1:175805-175824	Msa1003120:CDS	45.0%
	TTATAGCTGCCAAGGACCTT+TGG	+	chr7_1:175902-175921	Msa1003120:CDS	45.0%
	GATAATGAAGCTCCTTCCCA+AGG	+	chr7_1:175972-175991	Msa1003120:CDS	45.0%
!	CCAAAAGTACAACCTTGGGA+AGG	-	chr7_1:175987-176006	None:intergenic	45.0%
!	CCTTCCCAAGGTTGTACTTT+TGG	+	chr7_1:175984-176003	Msa1003120:CDS	45.0%
	ATCATCTTCTTAGCCCTTCC+AGG	+	chr7_1:176024-176043	Msa1003120:CDS	45.0%
	TGGGAGAGATGCAAGTCCAT+AGG	+	chr7_1:175636-175655	Msa1003120:CDS	50.0%
	GAGAGATGCAAGTCCATAGG+AGG	+	chr7_1:175639-175658	Msa1003120:CDS	50.0%
	AGATGCAAGTCCATAGGAGG+AGG	+	chr7_1:175642-175661	Msa1003120:CDS	50.0%
!	AATCATGGCCTAGTCTTCCG+CGG	+	chr7_1:175730-175749	Msa1003120:CDS	50.0%
	TAGACGAAAGAAAGTGGCCC+CGG	+	chr7_1:175764-175783	Msa1003120:CDS	50.0%
!!	TACACCGAAAAGCATCCCTC+CGG	-	chr7_1:175786-175805	None:intergenic	50.0%
!!	GGATGCTTTTCGGTGTACGT+TGG	+	chr7_1:175789-175808	Msa1003120:CDS	50.0%
	AAGGAAGAGCCAAAGGTCCT+TGG	-	chr7_1:175914-175933	None:intergenic	50.0%
	TGCAAGTCCATAGGAGGAGG+AGG	+	chr7_1:175645-175664	Msa1003120:CDS	55.0%
	AAGTCCATAGGAGGAGGAGG+AGG	+	chr7_1:175648-175667	Msa1003120:CDS	55.0%
!	ATCATGGCCTAGTCTTCCGC+GGG	+	chr7_1:175731-175750	Msa1003120:CDS	55.0%
!	CGTCTATTTTCTTCGCCCCG+CGG	-	chr7_1:175750-175769	None:intergenic	55.0%
!!	ACACCGAAAAGCATCCCTCC+GGG	-	chr7_1:175785-175804	None:intergenic	55.0%
	TCCATAGGAGGAGGAGGAGG+AGG	+	chr7_1:175651-175670	Msa1003120:CDS	60.0%
	TCCTCCTCCTCCTCCTCCTA+TGG	-	chr7_1:175655-175674	None:intergenic	60.0%
	ATAGGAGGAGGAGGAGGAGG+AGG	+	chr7_1:175654-175673	Msa1003120:CDS	60.0%
!	TCATGGCCTAGTCTTCCGCG+GGG	+	chr7_1:175732-175751	Msa1003120:CDS	60.0%
	ACGAAAGAAAGTGGCCCCGG+AGG	+	chr7_1:175767-175786	Msa1003120:CDS	60.0%
	CGAAAGAAAGTGGCCCCGGA+GGG	+	chr7_1:175768-175787	Msa1003120:CDS	60.0%
!!	CACCGAAAAGCATCCCTCCG+GGG	-	chr7_1:175784-175803	None:intergenic	60.0%
	TCTTCGCCCCGCGGAAGACT+AGG	-	chr7_1:175741-175760	None:intergenic	65.0%
!	GGCCCCGGAGGGATGCTTTT+CGG	+	chr7_1:175779-175798	Msa1003120:CDS	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	175570	176070	175570	ID=Msa1003120;Name=Msa1003120
chr7_1	mRNA	175570	176070	175570	ID=Msa1003120-mRNA-1;Parent=Msa1003120;Name=Msa1003120-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|166
chr7_1	exon	175570	176070	175570	ID=Msa1003120-mRNA-1:exon:11;Parent=Msa1003120-mRNA-1
chr7_1	CDS	175570	176070	175570	ID=Msa1003120-mRNA-1:cds;Parent=Msa1003120-mRNA-1

Gene Sequence

>Msa1003120

ATGGATATTGGCAAGAACATGAAGCAAGGAAAAGGGAACAAGAAAATAGGCCTCATCACAAAAACGTGGGAGAGATGCAAGTCCATAGGAGGAGGAGGAGGAGGAGGACACAAGAGTAAATCATATTCATCATCAGTGATTCCAACGACAAGAAGGAGCAAATCATGGCCTAGTCTTCCGCGGGGCGAAGAAAATAGACGAAAGAAAGTGGCCCCGGAGGGATGCTTTTCGGTGTACGTTGGACCTCAAATGCAAAGGTTTGTGATCAAAACTGAGTATGCTAATCATCCTTTGTTCAAGATGTTGCTTGAAGAAGCTGAATCAGAATATGGTTATAGCTGCCAAGGACCTTTGGCTCTTCCTTGTAATGTTGATGTCTTTTACAAAGTGTTGATGGAAATGGATAATGAAGCTCCTTCCCAAGGTTGTACTTTTGGTCGTTCTCGTTCTTCTTATCATCTTCTTAGCCCTTCCAGGATGATTGTTTTAAACAACTTCTAA

Protein sequence

>Msa1003120

MDIGKNMKQGKGNKKIGLITKTWERCKSIGGGGGGGHKSKSYSSSVIPTTRRSKSWPSLPRGEENRRKKVAPEGCFSVYVGPQMQRFVIKTEYANHPLFKMLLEEAESEYGYSCQGPLALPCNVDVFYKVLMEMDNEAPSQGCTFGRSRSSYHLLSPSRMIVLNNF*