AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0154750

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0154750 MtrunA17_Chr1g0186441 77.663 291 18 2 78 367 3 247 3.93e-119 345
Msa0154750 MtrunA17_Chr1g0168121 68.345 278 72 5 103 367 1 275 2.01e-102 303
Msa0154750 MtrunA17_Chr1g0190051 54.633 313 110 10 79 367 1 305 1.29e-79 246
Msa0154750 MtrunA17_Chr3g0112131 59.910 222 71 5 147 356 86 301 8.47e-68 216
Msa0154750 MtrunA17_Chr5g0443311 56.364 220 76 5 140 359 51 250 1.86e-64 206
Msa0154750 MtrunA17_Chr5g0398531 74.026 154 40 0 140 293 100 253 6.92e-64 206
Msa0154750 MtrunA17_Chr8g0351651 60.262 229 84 6 140 367 86 308 2.72e-63 204
Msa0154750 MtrunA17_Chr7g0250031 50.923 271 108 5 90 348 1 258 1.62e-62 201
Msa0154750 MtrunA17_Chr3g0133051 50.556 180 85 2 132 307 66 245 1.05e-57 189
Msa0154750 MtrunA17_Chr4g0054651 57.789 199 73 3 147 343 83 272 2.61e-57 188
Msa0154750 MtrunA17_Chr5g0435681 67.133 143 47 0 147 289 96 238 3.61e-52 176
Msa0154750 MtrunA17_Chr5g0427311 43.404 235 107 6 105 327 9 229 1.24e-43 151
Msa0154750 MtrunA17_Chr1g0186461 57.303 178 28 4 127 304 39 168 1.21e-38 136
Msa0154750 MtrunA17_Chr3g0094471 38.919 185 87 2 128 286 43 227 3.27e-33 125
Msa0154750 MtrunA17_Chr5g0441851 32.143 168 103 3 131 287 68 235 5.92e-28 109
Msa0154750 MtrunA17_Chr5g0397551 34.375 192 106 7 139 318 103 286 1.43e-22 96.7
Msa0154750 MtrunA17_Chr1g0175001 29.775 178 115 2 139 306 84 261 1.42e-21 93.2
Msa0154750 MtrunA17_Chr4g0028211 32.370 173 105 3 125 287 23 193 2.98e-21 91.7
Msa0154750 MtrunA17_Chr4g0028181 32.075 159 98 2 139 287 50 208 6.27e-21 91.3
Msa0154750 MtrunA17_Chr5g0441901 33.548 155 93 3 138 283 73 226 6.72e-21 90.5
Msa0154750 MtrunA17_Chr5g0441441 36.242 149 87 2 140 281 50 197 3.52e-20 88.2
Msa0154750 MtrunA17_Chr1g0190011 37.500 136 81 2 149 280 88 223 4.28e-20 90.1
Msa0154750 MtrunA17_Chr6g0476061 39.655 116 67 1 167 279 130 245 5.84e-20 89.4
Msa0154750 MtrunA17_Chr1g0161621 31.056 161 99 2 139 287 100 260 2.37e-19 87.4
Msa0154750 MtrunA17_Chr1g0179461 39.474 114 65 2 170 279 148 261 4.30e-19 87.4
Msa0154750 MtrunA17_Chr4g0054661 36.184 152 72 5 140 279 118 256 3.03e-17 82.0
Msa0154750 MtrunA17_Chr7g0274821 39.823 113 68 0 167 279 143 255 3.24e-17 82.0
Msa0154750 MtrunA17_Chr7g0247431 34.731 167 100 3 138 298 125 288 3.39e-17 81.6
Msa0154750 MtrunA17_Chr4g0034501 39.175 97 59 0 138 234 32 128 1.37e-16 77.0
Msa0154750 MtrunA17_Chr8g0351761 35.294 153 91 2 170 318 145 293 3.12e-16 79.0
Msa0154750 MtrunA17_Chr8g0386741 31.944 144 94 3 158 298 157 299 3.34e-16 79.0
Msa0154750 MtrunA17_Chr8g0349091 40.566 106 60 1 133 235 118 223 6.15e-16 78.2
Msa0154750 MtrunA17_Chr7g0245841 47.761 67 35 0 170 236 130 196 1.41e-15 77.0
Msa0154750 MtrunA17_Chr1g0188211 37.931 116 68 2 167 279 134 248 2.04e-15 76.6
Msa0154750 MtrunA17_Chr8g0374021 31.210 157 96 4 171 316 5 160 2.64e-14 70.1
Msa0154750 MtrunA17_Chr4g0027371 38.060 134 72 4 157 279 4 137 5.17e-13 68.2
Msa0154750 MtrunA17_Chr4g0056761 43.284 67 38 0 170 236 147 213 9.23e-13 68.6
Msa0154750 MtrunA17_Chr5g0398621 29.286 140 91 3 170 302 100 238 1.37e-12 67.0
Msa0154750 MtrunA17_Chr6g0476241 38.739 111 66 2 170 280 180 288 3.98e-12 66.2
Msa0154750 MtrunA17_Chr4g0027351 38.333 120 65 4 157 268 4 122 8.10e-12 62.4
Msa0154750 MtrunA17_Chr4g0027331 37.398 123 66 4 157 268 4 126 3.64e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0154750 AT4G14465.1 61.486 296 92 7 79 367 1 281 2.30e-103 306
Msa0154750 AT3G04570.1 62.762 239 59 5 79 289 1 237 2.48e-79 246
Msa0154750 AT1G76500.1 63.102 187 55 4 116 291 49 232 1.37e-62 202
Msa0154750 AT2G35270.1 53.247 231 82 5 140 367 78 285 1.76e-61 199
Msa0154750 AT2G45430.1 59.292 226 81 6 140 358 89 310 4.54e-61 199
Msa0154750 AT2G42940.1 64.286 154 55 0 140 293 53 206 2.96e-60 195
Msa0154750 AT4G22810.1 54.357 241 76 5 140 367 105 324 3.92e-60 197
Msa0154750 AT3G60870.1 55.838 197 76 4 97 284 7 201 3.55e-59 192
Msa0154750 AT5G49700.1 41.304 276 119 9 103 367 33 276 1.18e-56 186
Msa0154750 AT4G12050.1 70.323 155 45 1 140 293 118 272 1.43e-56 188
Msa0154750 AT3G55560.1 44.179 335 112 11 79 366 1 307 1.53e-54 182
Msa0154750 AT4G17800.1 55.340 206 66 2 147 346 89 274 4.34e-54 180
Msa0154750 AT4G35390.1 68.000 150 46 1 140 287 63 212 6.14e-50 169
Msa0154750 AT1G20900.1 59.259 189 60 2 118 289 56 244 2.07e-47 163
Msa0154750 AT1G14490.2 49.444 180 79 4 141 310 25 202 2.49e-44 152
Msa0154750 AT1G14490.1 49.444 180 79 4 141 310 6 183 2.64e-44 152
Msa0154750 AT4G17950.1 41.781 146 78 3 140 280 196 339 3.79e-22 97.4
Msa0154750 AT1G63470.1 36.735 147 86 3 140 280 147 292 6.56e-22 96.3
Msa0154750 AT5G62260.2 37.097 124 75 1 167 287 160 283 9.75e-21 91.7
Msa0154750 AT2G45850.1 39.474 152 82 4 139 282 131 280 5.05e-20 90.5
Msa0154750 AT2G45850.2 39.474 152 82 4 139 282 131 280 5.05e-20 90.5
Msa0154750 AT2G33620.1 37.241 145 87 3 138 279 135 278 8.28e-20 89.7
Msa0154750 AT2G33620.4 37.241 145 87 3 138 279 135 278 8.28e-20 89.7
Msa0154750 AT2G33620.2 37.241 145 87 3 138 279 135 278 8.28e-20 89.7
Msa0154750 AT2G33620.3 37.241 145 87 3 138 279 135 278 8.28e-20 89.7
Msa0154750 AT4G12080.1 39.316 117 68 1 170 283 173 289 9.89e-20 89.7
Msa0154750 AT5G62260.1 37.931 116 69 1 167 279 160 275 1.17e-19 90.1
Msa0154750 AT5G62260.3 37.931 116 69 1 167 279 160 275 1.17e-19 90.1
Msa0154750 AT5G51590.1 38.938 113 66 1 170 279 181 293 2.98e-19 89.0
Msa0154750 AT4G25320.1 35.220 159 83 3 141 279 123 281 3.30e-19 88.6
Msa0154750 AT3G04590.2 37.273 110 69 0 170 279 174 283 8.00e-19 87.8
Msa0154750 AT2G45850.3 38.667 150 82 4 139 280 131 278 1.06e-18 85.5
Msa0154750 AT3G04590.1 37.273 110 69 0 170 279 174 283 1.44e-18 85.9
Msa0154750 AT1G63480.2 30.978 184 106 6 140 303 130 312 1.34e-16 80.5
Msa0154750 AT1G63480.1 30.978 184 106 6 140 303 130 312 1.34e-16 80.5
Msa0154750 AT1G63480.5 30.811 185 107 6 140 304 124 307 1.39e-16 80.5
Msa0154750 AT1G63480.7 30.811 185 107 6 140 304 124 307 1.39e-16 80.5
Msa0154750 AT1G63480.4 30.811 185 107 6 140 304 124 307 1.39e-16 80.5
Msa0154750 AT1G63480.3 30.811 185 107 6 140 304 124 307 1.39e-16 80.5
Msa0154750 AT1G63480.6 30.811 185 107 6 140 304 124 307 1.39e-16 80.5
Msa0154750 AT5G46640.1 42.759 145 76 3 140 280 155 296 6.31e-16 79.0
Msa0154750 AT3G61310.1 34.667 150 92 2 139 282 133 282 1.80e-14 74.3
Msa0154750 AT4G00200.2 39.655 116 67 1 170 282 126 241 5.20e-14 72.4
Msa0154750 AT4G00200.1 39.655 116 67 1 170 282 126 241 5.20e-14 72.4
Msa0154750 AT4G22770.2 38.333 120 71 1 170 286 153 272 1.22e-13 71.6
Msa0154750 AT4G22770.1 38.333 120 71 1 170 286 153 272 1.22e-13 71.6

Find 122 sgRNAs with CRISPR-Local

Find 513 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCACTTGGTGAGTGGGTTCC+TGG 0.152889 1_4:-19518008 None:intergenic
CCAAATTTGTTGCCTAATAA+TGG 0.209471 1_4:+19518746 Msa0154750:CDS
CCATTATTAGGCAACAAATT+TGG 0.219989 1_4:-19518746 None:intergenic
ACAATTCAAGGAGGGTTATC+TGG 0.264024 1_4:+19517978 Msa0154750:CDS
ACATGGCTCTTCAAAGCATT+TGG 0.272297 1_4:-19518215 None:intergenic
GTTACAAAGATGGGTGGTTT+TGG 0.295281 1_4:-19518182 None:intergenic
CTTGCCTGGGCTGCTGCTCA+TGG 0.299376 1_4:+19518791 Msa0154750:CDS
CCCATCTGCCCTCCATTATT+AGG 0.325156 1_4:-19518758 None:intergenic
AAATACTACAACAGCAGTTC+TGG 0.340855 1_4:+19517941 Msa0154750:CDS
CCACTCAACTCAACTCAATA+AGG 0.342276 1_4:-19518821 None:intergenic
AGTGTACTTGGCTGGAGGTC+AGG 0.342488 1_4:+19518466 Msa0154750:CDS
CAAAACTAATCAAGCTCAAT+TGG 0.345252 1_4:+19517867 Msa0154750:intron
GGTGCTGTTGTAGCACTTCA+TGG 0.358357 1_4:+19518371 Msa0154750:CDS
CCTGCTCCACCAGGTTCAAC+TGG 0.375523 1_4:+19518437 Msa0154750:CDS
GATCCAGGTGGTCTTCCTCT+TGG 0.385010 1_4:-19518149 None:intergenic
CATGGCTCTTCAAAGCATTT+GGG 0.396581 1_4:-19518214 None:intergenic
TGGGACATGAGGCTCTTGCC+TGG 0.399930 1_4:+19518777 Msa0154750:CDS
GTAGTTGGAGGTTGTGTTGT+TGG 0.411543 1_4:+19518494 Msa0154750:CDS
GGAGGTCAGGGTCAGGTAGT+TGG 0.413964 1_4:+19518479 Msa0154750:CDS
GTGGTCTTCCTCTTGGTCTT+CGG 0.414167 1_4:-19518142 None:intergenic
TGCAACTGATGACCAATTCC+TGG 0.414250 1_4:-19518677 None:intergenic
GGATCGCCTCCACCAGGAAT+TGG 0.416217 1_4:+19518665 Msa0154750:CDS
GTGCAAGGTGGAGGAGCATC+TGG 0.418903 1_4:+19509977 Msa0154750:CDS
CAATTCAAGGAGGGTTATCT+GGG 0.426102 1_4:+19517979 Msa0154750:CDS
CTACCTGGTCCTGCTCCACC+AGG 0.428797 1_4:+19518428 Msa0154750:CDS
GCTATCTCTTGTTACAAAGA+TGG 0.435101 1_4:-19518192 None:intergenic
GTGCAAGGTGGAGGAGCGTC+TGG 0.440396 1_4:+19518641 Msa0154750:CDS
GGATCGCCTCCATCGAGAAT+TGG 0.441380 1_4:+19510001 Msa0154750:CDS
CTTGGCTGGAGGTCAGGGTC+AGG 0.442843 1_4:+19518472 Msa0154750:CDS
AACTGGTCTTACAGTGTACT+TGG 0.444380 1_4:+19518454 Msa0154750:CDS
AGGAATTGGTCATCAGTTGC+AGG 0.445128 1_4:+19518679 Msa0154750:CDS
GTTGGAACTCTTGTTGCAGT+TGG 0.451198 1_4:+19518512 Msa0154750:CDS
CACTTGGTGAGTGGGTTCCT+GGG 0.452332 1_4:-19518007 None:intergenic
TTGGTCATCAGTTGCAGGGT+GGG 0.456584 1_4:+19518684 Msa0154750:CDS
GCCTAATAATGGAGGGCAGA+TGG 0.462555 1_4:+19518757 Msa0154750:CDS
AATCCTTGGTGGACAATTCA+AGG 0.465438 1_4:+19517966 Msa0154750:CDS
GCGGGAGGTGTGCAAGGTGG+AGG 0.466037 1_4:+19509968 Msa0154750:CDS
GCGGGAGGTGTGCAAGGTGG+AGG 0.466037 1_4:+19518632 Msa0154750:CDS
CTATCTCTTGTTACAAAGAT+GGG 0.474278 1_4:-19518191 None:intergenic
TGCACACCTCCCGCAGAACC+AGG 0.475741 1_4:-19518623 None:intergenic
AAAGGCATGGAAGAAGGATC+TGG 0.482278 1_4:-19518710 None:intergenic
CCAGTTGAACCTGGTGGAGC+AGG 0.482936 1_4:-19518437 None:intergenic
AATGAAGGGCCTGGTTCTGC+GGG 0.484847 1_4:+19518614 Msa0154750:CDS
GGTTCTGCGGGAGGTGTGCA+AGG 0.486519 1_4:+19518626 Msa0154750:CDS
CTGTTGTAGCACTTCATGGT+AGG 0.488288 1_4:+19518375 Msa0154750:CDS
GTGTACTTGGCTGGAGGTCA+GGG 0.493209 1_4:+19518467 Msa0154750:CDS
GGGACATGAGGCTCTTGCCT+GGG 0.498915 1_4:+19518778 Msa0154750:CDS
TTCTGCTATATCAGCTCCAC+CGG 0.501001 1_4:-19518249 None:intergenic
CCTAATAATGGAGGGCAGAT+GGG 0.501432 1_4:+19518758 Msa0154750:CDS
GTTTAAACCACTTGGTGAGT+GGG 0.503662 1_4:-19518015 None:intergenic
ACTTCAACTGCACCTTCTCT+AGG 0.505701 1_4:-19518113 None:intergenic
AGGTAGAAAAGTCCCGGTTA+AGG 0.506619 1_4:-19518411 None:intergenic
GATGATAATGATAATAATGA+AGG 0.507615 1_4:+19518599 Msa0154750:CDS
TCTTCCATGAGCAGCAGCCC+AGG 0.509624 1_4:-19518795 None:intergenic
GGTCAGGGTCAGGTAGTTGG+AGG 0.515248 1_4:+19518482 Msa0154750:CDS
CAGCAGTTCTGGCTAATCCT+TGG 0.516441 1_4:+19517952 Msa0154750:CDS
CTTAGACAACCTTCAGCTCC+TGG 0.520193 1_4:+19518350 Msa0154750:CDS
TTATTAGGCAACAAATTTGG+TGG 0.521583 1_4:-19518743 None:intergenic
TGCACACCTCCCGCAGAACT+AGG 0.524411 1_4:-19509959 None:intergenic
TTATACAAAGGCATGGAAGA+AGG 0.526106 1_4:-19518716 None:intergenic
AGTTCTGCGGGAGGTGTGCA+AGG 0.529790 1_4:+19509962 Msa0154750:CDS
AATGAAAAGCCTAGTTCTGC+GGG 0.534367 1_4:+19509950 Msa0154750:CDS
GGTCTTACAGTGTACTTGGC+TGG 0.537231 1_4:+19518458 Msa0154750:CDS
AATGATAATAATGAAGGGCC+TGG 0.537636 1_4:+19518605 Msa0154750:CDS
TGTTTAAACCACTTGGTGAG+TGG 0.539187 1_4:-19518016 None:intergenic
CAGTTCTGGCTAATCCTTGG+TGG 0.541662 1_4:+19517955 Msa0154750:CDS
TAATGAAGGGCCTGGTTCTG+CGG 0.545608 1_4:+19518613 Msa0154750:CDS
AGAGAAGGTGCAGTTGAAGT+TGG 0.547259 1_4:+19518116 Msa0154750:CDS
TGCTTTGAAGAGCCATGTCA+TGG 0.550949 1_4:+19518220 Msa0154750:CDS
TGGTGTTTGTTTAAACCACT+TGG 0.552489 1_4:-19518023 None:intergenic
GTTTGTGTTCTCAGTGGAAG+TGG 0.555754 1_4:+19518308 Msa0154750:CDS
GAACCTGGTGGAGCAGGACC+AGG 0.556098 1_4:-19518431 None:intergenic
AATTTGTTGCCTAATAATGG+AGG 0.564310 1_4:+19518749 Msa0154750:CDS
GTGTGGCACAATTCGCAAGA+AGG 0.565025 1_4:+19518273 Msa0154750:CDS
TCTGGTGGATCGCCTCCACC+AGG 0.566478 1_4:+19518659 Msa0154750:CDS
TGATTGTTAGGTTTGTGTTG+TGG 0.569261 1_4:-19518043 None:intergenic
GGGTTATCTGGGGTTGACCC+AGG 0.573460 1_4:+19517990 Msa0154750:CDS
GAAGGGCCTGGTTCTGCGGG+AGG 0.573762 1_4:+19518617 Msa0154750:CDS
CACCGGCTACTTCCATGACA+TGG 0.575384 1_4:-19518232 None:intergenic
CGCGGTGTTTGTGTTCTCAG+TGG 0.579327 1_4:+19518302 Msa0154750:CDS
TCATTATCATCGTCATCAAG+TGG 0.580583 1_4:-19518587 None:intergenic
TGATGACCAATTCCTGGTGG+AGG 0.582864 1_4:-19518671 None:intergenic
ACTGTAAGACCAGTTGAACC+TGG 0.584188 1_4:-19518446 None:intergenic
AGACCAAGAGGAAGACCACC+TGG 0.587335 1_4:+19518146 Msa0154750:CDS
AACTGATGACCAATTCTCGA+TGG 0.590555 1_4:-19510010 None:intergenic
AGGACCAGGTAGAAAAGTCC+CGG 0.591266 1_4:-19518417 None:intergenic
AAGTCTCTCATAAGTAGCAT+TGG 0.592390 1_4:-19518564 None:intergenic
TGGCAAATTATACAAAGGCA+TGG 0.593563 1_4:-19518723 None:intergenic
TGGAGGGCAGATGGGACATG+AGG 0.594853 1_4:+19518766 Msa0154750:CDS
TCTGCGGGAGGTGTGCAAGG+TGG 0.595107 1_4:+19518629 Msa0154750:CDS
TTTGGTGGCAAATTATACAA+AGG 0.596262 1_4:-19518728 None:intergenic
AGCCATGTCATGGAAGTAGC+CGG 0.596477 1_4:+19518230 Msa0154750:CDS
TAATGAAAAGCCTAGTTCTG+CGG 0.600682 1_4:+19509949 Msa0154750:CDS
ACAACAGCACCAGGAGCTGA+AGG 0.601528 1_4:-19518359 None:intergenic
TGAAGTGCTACAACAGCACC+AGG 0.605157 1_4:-19518368 None:intergenic
ATGATAATGATAATAATGAA+GGG 0.605731 1_4:+19518600 Msa0154750:CDS
ATTTGTTGCCTAATAATGGA+GGG 0.617852 1_4:+19518750 Msa0154750:CDS
TCTCTTGTTACAAAGATGGG+TGG 0.617894 1_4:-19518188 None:intergenic
CAAGGTGGAGGAGCGTCTGG+TGG 0.620899 1_4:+19518644 Msa0154750:CDS
GGAATTGGTCATCAGTTGCA+GGG 0.626929 1_4:+19518680 Msa0154750:CDS
CTTGGTGGACAATTCAAGGA+GGG 0.630959 1_4:+19517970 Msa0154750:CDS
AGCTGATATAGCAGAAAGTG+TGG 0.642948 1_4:+19518256 Msa0154750:CDS
TCTGCGGGAGGTGTGCAAGG+TGG 0.650042 1_4:+19509965 Msa0154750:CDS
CTTACAGTGTACTTGGCTGG+AGG 0.650202 1_4:+19518461 Msa0154750:CDS
ATTGGTCATCAGTTGCAGGG+TGG 0.653304 1_4:+19518683 Msa0154750:CDS
TGATGACCAATTCTCGATGG+AGG 0.654546 1_4:-19510007 None:intergenic
CAAGGTGGAGGAGCATCTGG+TGG 0.659188 1_4:+19509980 Msa0154750:CDS
AACAGAGATGAACCTAGAGA+AGG 0.663205 1_4:+19518101 Msa0154750:CDS
GTTGGTAACCGAAGACCAAG+AGG 0.671648 1_4:+19518134 Msa0154750:CDS
CTCAACTCAACTCAATAAGG+TGG 0.676109 1_4:-19518818 None:intergenic
CCAGGAACCCACTCACCAAG+TGG 0.676419 1_4:+19518008 Msa0154750:CDS
GAAAAGCCTAGTTCTGCGGG+AGG 0.680647 1_4:+19509953 Msa0154750:CDS
AGTAACATTAGTAAAACTAG+CGG 0.681112 1_4:-19509888 None:intergenic
AACTGATGACCAATTCCTGG+TGG 0.683488 1_4:-19518674 None:intergenic
CCTCCTTGAATTGTCCACCA+AGG 0.691826 1_4:-19517969 None:intergenic
AGTAGCATTGGTAAACGTAG+CGG 0.698289 1_4:-19518552 None:intergenic
GTAAGACCAGTTGAACCTGG+TGG 0.698978 1_4:-19518443 None:intergenic
TCATTATCATCATCATCACG+TGG 0.712149 1_4:-19509923 None:intergenic
AATTCAAGGAGGGTTATCTG+GGG 0.712203 1_4:+19517980 Msa0154750:CDS
CATGTCATGGAAGTAGCCGG+TGG 0.712235 1_4:+19518233 Msa0154750:CDS
CCTTGGTGGACAATTCAAGG+AGG 0.716947 1_4:+19517969 Msa0154750:CDS
TTCGCAAGAAGGCGTCAACG+CGG 0.746882 1_4:+19518284 Msa0154750:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CATAGTATATTATTTATTTT+AGG - chr1_4:19511240-19511259 None:intergenic 10.0%
!! TCAATATACTTTATAATATA+TGG + chr1_4:19512428-19512447 Msa0154750:intron 10.0%
!! AAATTTCAAATTGTAAATTA+CGG + chr1_4:19512576-19512595 Msa0154750:intron 10.0%
!! ATATGTTCATTTATAAAAAT+GGG - chr1_4:19512746-19512765 None:intergenic 10.0%
!!! AAAATTAGTTGATTTTTTTA+TGG - chr1_4:19513124-19513143 None:intergenic 10.0%
!! TAATATATCTTAATAGAATT+TGG - chr1_4:19513942-19513961 None:intergenic 10.0%
!! TTATTAAATATGATAAAAGT+TGG - chr1_4:19514522-19514541 None:intergenic 10.0%
!!! TTTTTTTTTTGCTTATAATA+TGG + chr1_4:19514742-19514761 Msa0154750:intron 10.0%
!!! TTTTTTTTTGCTTATAATAT+GGG + chr1_4:19514743-19514762 Msa0154750:intron 10.0%
!! ATATATTACTTAATTAAAAC+TGG + chr1_4:19514920-19514939 Msa0154750:intron 10.0%
!! AAACACATATATTAAATTTA+AGG + chr1_4:19515082-19515101 Msa0154750:intron 10.0%
!!! AGTTGAATAAAATTTTTATA+AGG - chr1_4:19515154-19515173 None:intergenic 10.0%
!! TTATTAATATATTTAGTAAG+CGG - chr1_4:19515269-19515288 None:intergenic 10.0%
!! ATTGATAGATTTATTTATAT+TGG - chr1_4:19515428-19515447 None:intergenic 10.0%
!! TATATTAATCTTCAATTAAT+TGG - chr1_4:19515557-19515576 None:intergenic 10.0%
!!! TTGAAGATTAATATAATTTT+TGG + chr1_4:19515562-19515581 Msa0154750:intron 10.0%
!!! TGAAGATTAATATAATTTTT+GGG + chr1_4:19515563-19515582 Msa0154750:intron 10.0%
!! ATAACAAAAAAAAAAACTTG+TGG - chr1_4:19511001-19511020 None:intergenic 15.0%
!!! ATACAATATTTTAGTTCAAA+GGG - chr1_4:19511296-19511315 None:intergenic 15.0%
!!! AATACAATATTTTAGTTCAA+AGG - chr1_4:19511297-19511316 None:intergenic 15.0%
!! ATGAATAATGAAAAACTAAT+TGG - chr1_4:19511326-19511345 None:intergenic 15.0%
!! TTCTCAAATTTATTTCAAAA+TGG + chr1_4:19511585-19511604 Msa0154750:intron 15.0%
!!! ATTTATTTTCCCAATATTAT+GGG - chr1_4:19512355-19512374 None:intergenic 15.0%
!!! AATTTATTTTCCCAATATTA+TGG - chr1_4:19512356-19512375 None:intergenic 15.0%
!!! TTTTCTATAGAAGAATTTTT+TGG - chr1_4:19512539-19512558 None:intergenic 15.0%
!!! GTAATTTACAATTTGAAATT+TGG - chr1_4:19512577-19512596 None:intergenic 15.0%
!! AATTTCAAATTGTAAATTAC+GGG + chr1_4:19512577-19512596 Msa0154750:intron 15.0%
!! CATATGTTCATTTATAAAAA+TGG - chr1_4:19512747-19512766 None:intergenic 15.0%
!! ATACACATATAATAATCATA+TGG - chr1_4:19512936-19512955 None:intergenic 15.0%
!!! AATATGACTTTATAAACTTT+TGG + chr1_4:19513200-19513219 Msa0154750:intron 15.0%
!! CTACAAATTAAAATTATTGA+AGG - chr1_4:19513496-19513515 None:intergenic 15.0%
!! AGAAAAGAAAATAATATACT+TGG - chr1_4:19513554-19513573 None:intergenic 15.0%
!! ATTCTATTAAGATATATTAG+TGG + chr1_4:19513943-19513962 Msa0154750:intron 15.0%
!! AAAACTTAAATGTAACTTAT+AGG + chr1_4:19514025-19514044 Msa0154750:intron 15.0%
!!! TTTTTGCTTATAATTTAAGA+CGG - chr1_4:19514460-19514479 None:intergenic 15.0%
!!! TATGTTTTAGTTTTCTTAAT+AGG + chr1_4:19514708-19514727 Msa0154750:intron 15.0%
!!! TTTTATCGTTTCTTTATATT+TGG - chr1_4:19515054-19515073 None:intergenic 15.0%
!! CCTAAAAAATTATAAACTAT+GGG - chr1_4:19515125-19515144 None:intergenic 15.0%
!! ACCTAAAAAATTATAAACTA+TGG - chr1_4:19515126-19515145 None:intergenic 15.0%
!!! AAAAAAAAAGTGATTTTAGT+TGG + chr1_4:19515203-19515222 Msa0154750:intron 15.0%
!! ATAGTCATAAACAAATTAAA+TGG - chr1_4:19515340-19515359 None:intergenic 15.0%
!!! TGTATTTACTTTCTTATTTA+TGG + chr1_4:19515458-19515477 Msa0154750:intron 15.0%
!!! GAAGATTAATATAATTTTTG+GGG + chr1_4:19515564-19515583 Msa0154750:intron 15.0%
!! TTGTCAAAATATATTGAATT+AGG + chr1_4:19517100-19517119 Msa0154750:intron 15.0%
!! TATTTGTTTGTTTATTCTAT+TGG - chr1_4:19517580-19517599 None:intergenic 15.0%
!! AGAATAAACAAACAAATAAA+TGG + chr1_4:19517582-19517601 Msa0154750:intron 15.0%
!! GAATAAACAAACAAATAAAT+GGG + chr1_4:19517583-19517602 Msa0154750:intron 15.0%
!!! ATGATAATGATAATAATGAA+GGG + chr1_4:19509936-19509955 Msa0154750:CDS 15.0%
!!! TTTTGTAGCAAATTATTCAA+AGG - chr1_4:19510067-19510086 None:intergenic 20.0%
!!! TTCTAAGTAAGATTTTAATG+AGG - chr1_4:19510616-19510635 None:intergenic 20.0%
!!! ACATGTATATCTAAAATAAG+AGG + chr1_4:19511073-19511092 Msa0154750:intron 20.0%
!! GATAACATGAATAATTATCA+AGG + chr1_4:19511259-19511278 Msa0154750:intron 20.0%
!! GAACTAAAATATTGTATTTC+AGG + chr1_4:19511299-19511318 Msa0154750:intron 20.0%
!!! TATATATCAAAGTGCTAAAA+TGG - chr1_4:19511433-19511452 None:intergenic 20.0%
!!! TCATCTTTTAAAAGTTCTTT+AGG + chr1_4:19511560-19511579 Msa0154750:intron 20.0%
!!! AGTGAATATTTTCTAAAAGA+GGG - chr1_4:19511632-19511651 None:intergenic 20.0%
!!! TAGTGAATATTTTCTAAAAG+AGG - chr1_4:19511633-19511652 None:intergenic 20.0%
!!! ATATGTCAAAAATGATAATG+AGG - chr1_4:19511902-19511921 None:intergenic 20.0%
!!! TCTTTATTTTCATAAGTTTC+AGG + chr1_4:19512008-19512027 Msa0154750:intron 20.0%
!!! ATTATGTATAAGTTCTCTTT+TGG + chr1_4:19512064-19512083 Msa0154750:intron 20.0%
!!! GAATTTTCATATTCTTACAT+AGG + chr1_4:19512086-19512105 Msa0154750:intron 20.0%
!!! TTTATTTTCCCAATATTATG+GGG - chr1_4:19512354-19512373 None:intergenic 20.0%
!! AAGTATATTGAGTTAGTAAT+TGG - chr1_4:19512419-19512438 None:intergenic 20.0%
!! TTCAATTGATGCATAAATTA+TGG - chr1_4:19512892-19512911 None:intergenic 20.0%
!! GAAGTTATAAAATATATACC+TGG + chr1_4:19512909-19512928 Msa0154750:intron 20.0%
!! TCAAATTATCAACTTTCTTT+GGG + chr1_4:19512993-19513012 Msa0154750:intron 20.0%
!! CATATATTTATTAAGCTTCA+AGG - chr1_4:19513398-19513417 None:intergenic 20.0%
!! AATAAATATATGAGACTTAG+AGG + chr1_4:19513406-19513425 Msa0154750:intron 20.0%
!!! AGTGTTAATTTGTTATCTAA+AGG - chr1_4:19513610-19513629 None:intergenic 20.0%
!! AATTAACACTCATCAATAAA+AGG + chr1_4:19513620-19513639 Msa0154750:intron 20.0%
!!! TTTTTTATGCACTAGATTTT+AGG + chr1_4:19513684-19513703 Msa0154750:intron 20.0%
!! ACTTTGATAGATCTTTATTA+AGG - chr1_4:19513910-19513929 None:intergenic 20.0%
!! TGGATCAAATATATAAAACT+AGG + chr1_4:19514075-19514094 Msa0154750:intron 20.0%
!! TAACAAAACACAATTAGAAA+AGG + chr1_4:19514251-19514270 Msa0154750:intron 20.0%
!! ATATAAAGGAACAAATTATG+TGG + chr1_4:19514361-19514380 Msa0154750:intron 20.0%
!!! GTCTTTTTTGCTTATAATTT+GGG - chr1_4:19514500-19514519 None:intergenic 20.0%
!!! CAAAAAATTATCTTTTCCAA+AGG + chr1_4:19514550-19514569 Msa0154750:intron 20.0%
!!! GATGTAAAAACAATTTTCAT+TGG - chr1_4:19514636-19514655 None:intergenic 20.0%
!! TTAAAACTGGAATTTATCAT+TGG + chr1_4:19514933-19514952 Msa0154750:intron 20.0%
!!! CCCATAGTTTATAATTTTTT+AGG + chr1_4:19515122-19515141 Msa0154750:intron 20.0%
!!! CTTTTTCAATGTAAACAAAT+AGG + chr1_4:19515292-19515311 Msa0154750:intron 20.0%
!!! TTTTAGCAATTGAATTTGTT+TGG + chr1_4:19515485-19515504 Msa0154750:intron 20.0%
!!! TTTAGCAATTGAATTTGTTT+GGG + chr1_4:19515486-19515505 Msa0154750:intron 20.0%
!! TATAGTTAAACAAGAAAGTT+AGG + chr1_4:19515714-19515733 Msa0154750:intron 20.0%
!! AAAAAATATCTAATCAACTG+TGG - chr1_4:19515922-19515941 None:intergenic 20.0%
!!! TGTTTTCTTACTTACTTTAT+TGG - chr1_4:19517284-19517303 None:intergenic 20.0%
!!! GATGATAATGATAATAATGA+AGG + chr1_4:19509935-19509954 Msa0154750:CDS 20.0%
! AGTAACATTAGTAAAACTAG+CGG - chr1_4:19509891-19509910 None:intergenic 25.0%
!!! CAAAATTTGTTGCCTAATAA+TGG + chr1_4:19510082-19510101 Msa0154750:intron 25.0%
!!! GAATTTGTCTTGTATTTTGA+AGG + chr1_4:19510239-19510258 Msa0154750:intron 25.0%
! GTTATGAATGATAAACTTAG+TGG - chr1_4:19510564-19510583 None:intergenic 25.0%
!!! AAGTAAAATTTTTGAGCAAC+TGG - chr1_4:19510830-19510849 None:intergenic 25.0%
!! AGTTGCTCAAAAATTTTACT+TGG + chr1_4:19510829-19510848 Msa0154750:intron 25.0%
!! TTGATTGGTTAAAATTCACA+TGG + chr1_4:19511117-19511136 Msa0154750:intron 25.0%
!! TGATTGGTTAAAATTCACAT+GGG + chr1_4:19511118-19511137 Msa0154750:intron 25.0%
! GATATTGAGATGAATTATGT+AGG - chr1_4:19511526-19511545 None:intergenic 25.0%
! AAAATATGAATTGTATGCCT+CGG + chr1_4:19511706-19511725 Msa0154750:intron 25.0%
!! TTTTATATAAAATTCCCCGA+AGG - chr1_4:19511742-19511761 None:intergenic 25.0%
! ACATACAAAAATCCTTGAAA+AGG - chr1_4:19512130-19512149 None:intergenic 25.0%
!! TTATTTTCCCAATATTATGG+GGG - chr1_4:19512353-19512372 None:intergenic 25.0%
! GAGGAGTTGTAAAAAAATAT+TGG - chr1_4:19512476-19512495 None:intergenic 25.0%
!! ACTTGTATATGATAACTTGT+TGG + chr1_4:19512603-19512622 Msa0154750:intron 25.0%
! ATATAATAATCATATGGACC+AGG - chr1_4:19512930-19512949 None:intergenic 25.0%
!!! CAAAGAAAGTTGATAATTTG+AGG - chr1_4:19512994-19513013 None:intergenic 25.0%
! CTCAAATTATCAACTTTCTT+TGG + chr1_4:19512992-19513011 Msa0154750:intron 25.0%
!! CTATATTACGAGACATATTT+TGG - chr1_4:19513317-19513336 None:intergenic 25.0%
! TTCAAGGATATCATTCTAAA+TGG - chr1_4:19513382-19513401 None:intergenic 25.0%
! TATCAAGAAACTAATGTTAG+TGG - chr1_4:19513530-19513549 None:intergenic 25.0%
!! AATCACAAAACTCAATTTTG+CGG + chr1_4:19513786-19513805 Msa0154750:intron 25.0%
! GGATTATATATATGAACTCA+TGG + chr1_4:19514055-19514074 Msa0154750:intron 25.0%
! TAGAAAAGGAAAAATTAGAG+AGG + chr1_4:19514265-19514284 Msa0154750:intron 25.0%
! ATGTCGAATAATATGTAAAG+AGG + chr1_4:19514398-19514417 Msa0154750:intron 25.0%
!! ATAATTTGGGACAAAGAAAA+TGG - chr1_4:19514487-19514506 None:intergenic 25.0%
!!! GGTCTTTTTTGCTTATAATT+TGG - chr1_4:19514501-19514520 None:intergenic 25.0%
!!! CTTTGCATTTAATTTTCCTT+TGG - chr1_4:19514569-19514588 None:intergenic 25.0%
!! TTTTTGCTTATAATATGGGA+CGG + chr1_4:19514747-19514766 Msa0154750:intron 25.0%
! GTGATTAGATAATAACATCA+AGG - chr1_4:19514962-19514981 None:intergenic 25.0%
! TTTGTTTATGACTATTGTCT+TGG + chr1_4:19515345-19515364 Msa0154750:intron 25.0%
!! TTAGCAATTGAATTTGTTTG+GGG + chr1_4:19515487-19515506 Msa0154750:intron 25.0%
!! TATGGTTAGTGGTTTTTAAT+TGG - chr1_4:19516038-19516057 None:intergenic 25.0%
! GAGTGTATATCTTACAATAA+TGG - chr1_4:19516086-19516105 None:intergenic 25.0%
!! ATTTACCCTTTTTATGATCT+GGG + chr1_4:19516169-19516188 Msa0154750:intron 25.0%
! ATTCCAAATGCATAAAAAGT+TGG - chr1_4:19516236-19516255 None:intergenic 25.0%
!! TGATTACATTACATCACTTT+TGG + chr1_4:19516391-19516410 Msa0154750:intron 25.0%
!!! TTTTAGGGTTCAAATACAAT+TGG - chr1_4:19516419-19516438 None:intergenic 25.0%
! GCAAAAATCTCAGTTATTAT+AGG - chr1_4:19517019-19517038 None:intergenic 25.0%
!! ACGAAATGAGTCAATTATTT+TGG + chr1_4:19517197-19517216 Msa0154750:intron 25.0%
! TGCAAATGACTAAGTTATTA+TGG + chr1_4:19517228-19517247 Msa0154750:intron 25.0%
! GCAAATGACTAAGTTATTAT+GGG + chr1_4:19517229-19517248 Msa0154750:intron 25.0%
! TAAGTTATTATGGGACAAAA+AGG + chr1_4:19517238-19517257 Msa0154750:intron 25.0%
! AAGTTATTATGGGACAAAAA+GGG + chr1_4:19517239-19517258 Msa0154750:intron 25.0%
!! TACTCAAAATGATGATGATA+GGG - chr1_4:19517707-19517726 None:intergenic 25.0%
!! TTACTCAAAATGATGATGAT+AGG - chr1_4:19517708-19517727 None:intergenic 25.0%
! AGCTGAAAAAAGAAACAAAA+GGG - chr1_4:19517777-19517796 None:intergenic 25.0%
!!! TTAGTTGTTTTTTGTGATGT+AGG - chr1_4:19517840-19517859 None:intergenic 25.0%
TAGCAAATTATTCAAAGGCA+TGG - chr1_4:19510062-19510081 None:intergenic 30.0%
!! AATTTGTTGCCTAATAATGG+AGG + chr1_4:19510085-19510104 Msa0154750:intron 30.0%
! ATTTGTTGCCTAATAATGGA+GGG + chr1_4:19510086-19510105 Msa0154750:intron 30.0%
GATTTGCCAATTATTTAGAG+AGG + chr1_4:19510179-19510198 Msa0154750:intron 30.0%
TCTCTACCTCTCTAAATAAT+TGG - chr1_4:19510188-19510207 None:intergenic 30.0%
!! TGTCTTGTATTTTGAAGGAT+AGG + chr1_4:19510244-19510263 Msa0154750:intron 30.0%
!! GTCTTGTATTTTGAAGGATA+GGG + chr1_4:19510245-19510264 Msa0154750:intron 30.0%
ACACACTTGTAAAGAGAATA+AGG - chr1_4:19510412-19510431 None:intergenic 30.0%
TATGGTTAGTGGTTCTTAAT+TGG - chr1_4:19510494-19510513 None:intergenic 30.0%
!!! TGCTAGGATTTTTTTCAACA+AGG - chr1_4:19510643-19510662 None:intergenic 30.0%
GTTGAAAAAAATCCTAGCAA+AGG + chr1_4:19510644-19510663 Msa0154750:intron 30.0%
TTCTCGTTAAAAATCTTACC+AGG + chr1_4:19510694-19510713 Msa0154750:intron 30.0%
! CTTGGAAGTTACTTTGTAAA+AGG + chr1_4:19510847-19510866 Msa0154750:intron 30.0%
! ACAGTTGAAATAATGGAAGA+TGG - chr1_4:19510918-19510937 None:intergenic 30.0%
ACACGATATTGCATTCATAA+AGG + chr1_4:19510945-19510964 Msa0154750:intron 30.0%
AAAATGTGTGTTAGAATGTG+TGG + chr1_4:19511201-19511220 Msa0154750:intron 30.0%
CATTGAAGTGTACAACAAAT+GGG + chr1_4:19511391-19511410 Msa0154750:intron 30.0%
GTGCTAAAATGGTTGTATAT+AGG - chr1_4:19511422-19511441 None:intergenic 30.0%
ATGTTATGAATGAAATGCGA+TGG - chr1_4:19511974-19511993 None:intergenic 30.0%
!!! TTCTTTTGAGATCCTTTTCA+AGG + chr1_4:19512115-19512134 Msa0154750:intron 30.0%
! TGATATGAGCATTAGCATTT+TGG + chr1_4:19512229-19512248 Msa0154750:intron 30.0%
TTTATTCTCCCCCATAATAT+TGG + chr1_4:19512342-19512361 Msa0154750:intron 30.0%
TTATTCTCCCCCATAATATT+GGG + chr1_4:19512343-19512362 Msa0154750:intron 30.0%
! CAATTGATAATCAACCTACT+TGG + chr1_4:19512379-19512398 Msa0154750:intron 30.0%
GGAAATTGATATCGAACATT+AGG - chr1_4:19512773-19512792 None:intergenic 30.0%
!! TGATAAGTATTGAGCGTATA+TGG - chr1_4:19512794-19512813 None:intergenic 30.0%
AAGTTTATTGTTGACAAGAC+CGG - chr1_4:19513180-19513199 None:intergenic 30.0%
ATAAGTGTAGTACAATTCGA+AGG + chr1_4:19513255-19513274 Msa0154750:intron 30.0%
TTCCCCATGTAACATTATAT+TGG + chr1_4:19513459-19513478 Msa0154750:intron 30.0%
AGCCAATATAATGTTACATG+GGG - chr1_4:19513464-19513483 None:intergenic 30.0%
GAGCCAATATAATGTTACAT+GGG - chr1_4:19513465-19513484 None:intergenic 30.0%
AGAGCCAATATAATGTTACA+TGG - chr1_4:19513466-19513485 None:intergenic 30.0%
!! TAACATTATATTGGCTCTTC+TGG + chr1_4:19513468-19513487 Msa0154750:intron 30.0%
CATCAATAAAAGGACATTTG+TGG + chr1_4:19513630-19513649 Msa0154750:intron 30.0%
!! GCAAAATTGAGTTTTGTGAT+TGG - chr1_4:19513787-19513806 None:intergenic 30.0%
AGATATATATCCCGACAAAA+TGG - chr1_4:19513883-19513902 None:intergenic 30.0%
AGATATTGTATGTCATTGAG+TGG - chr1_4:19513995-19514014 None:intergenic 30.0%
ATGTAACTTATAGGAAAACG+AGG + chr1_4:19514034-19514053 Msa0154750:intron 30.0%
!! AGTTGAGCGATTTCATTTTT+CGG - chr1_4:19514302-19514321 None:intergenic 30.0%
! TGCTTATAATTTAAGACGGA+GGG - chr1_4:19514456-19514475 None:intergenic 30.0%
! TTGCTTATAATTTAAGACGG+AGG - chr1_4:19514457-19514476 None:intergenic 30.0%
CGGTCAATTATGCATAAAAT+TGG - chr1_4:19515249-19515268 None:intergenic 30.0%
TGAAACAATTGCACTTATCA+GGG - chr1_4:19515626-19515645 None:intergenic 30.0%
CAGATCATAAAAAGGGTAAA+TGG - chr1_4:19516170-19516189 None:intergenic 30.0%
! CATTTACCCTTTTTATGATC+TGG + chr1_4:19516168-19516187 Msa0154750:intron 30.0%
TAGTTCCCAGATCATAAAAA+GGG - chr1_4:19516177-19516196 None:intergenic 30.0%
AAAGAAAACACTGCATGTTA+GGG + chr1_4:19516200-19516219 Msa0154750:intron 30.0%
! ACACCAACTTTTTATGCATT+TGG + chr1_4:19516230-19516249 Msa0154750:intron 30.0%
TTGAACCCTAAAATTGAGAA+AGG + chr1_4:19516426-19516445 Msa0154750:intron 30.0%
TGAACCCTAAAATTGAGAAA+GGG + chr1_4:19516427-19516446 Msa0154750:intron 30.0%
! ATGAACTACATGATCTCTTT+TGG + chr1_4:19516588-19516607 Msa0154750:intron 30.0%
ACTTCATTCATATACACAAG+TGG + chr1_4:19516864-19516883 Msa0154750:intron 30.0%
AGTTATTATGGGACAAAAAG+GGG + chr1_4:19517240-19517259 Msa0154750:intron 30.0%
TATTTGAGGAGGACAAATTA+AGG - chr1_4:19517407-19517426 None:intergenic 30.0%
AACTAACTAACTATTTGAGG+AGG - chr1_4:19517418-19517437 None:intergenic 30.0%
CGAAACTAACTAACTATTTG+AGG - chr1_4:19517421-19517440 None:intergenic 30.0%
AGAGAATTAGATGCAATTAC+TGG - chr1_4:19517659-19517678 None:intergenic 30.0%
! AAATGATGATGATAGGGTAA+AGG - chr1_4:19517701-19517720 None:intergenic 30.0%
GAGCTGAAAAAAGAAACAAA+AGG - chr1_4:19517778-19517797 None:intergenic 30.0%
TTTGTGATGTAGGAGATATA+TGG - chr1_4:19517830-19517849 None:intergenic 30.0%
CAAAACTAATCAAGCTCAAT+TGG + chr1_4:19517867-19517886 Msa0154750:intron 30.0%
!! CGTGATTTTCATTGATTGTT+AGG - chr1_4:19518058-19518077 None:intergenic 30.0%
CTATCTCTTGTTACAAAGAT+GGG - chr1_4:19518194-19518213 None:intergenic 30.0%
!! TTTGAGATTTTGTCCTTAAC+CGG + chr1_4:19518398-19518417 Msa0154750:CDS 30.0%
! TTTGGTGGCAAATTATACAA+AGG - chr1_4:19518731-19518750 None:intergenic 30.0%
TTATTAGGCAACAAATTTGG+TGG - chr1_4:19518746-19518765 None:intergenic 30.0%
CCATTATTAGGCAACAAATT+TGG - chr1_4:19510085-19510104 None:intergenic 30.0%
!! CCAAATTTGTTGCCTAATAA+TGG + chr1_4:19518746-19518765 Msa0154750:CDS 30.0%
!! AATTTGTTGCCTAATAATGG+AGG + chr1_4:19510085-19510104 Msa0154750:intron 30.0%
! ATTTGTTGCCTAATAATGGA+GGG + chr1_4:19510086-19510105 Msa0154750:intron 30.0%
TCATTATCATCATCATCACG+TGG - chr1_4:19509926-19509945 None:intergenic 35.0%
!! TAATGAAAAGCCTAGTTCTG+CGG + chr1_4:19509949-19509968 Msa0154750:CDS 35.0%
AGAATTGGTCATCAGTTGTA+GGG + chr1_4:19510016-19510035 Msa0154750:intron 35.0%
! TTATTCAAAGGCATGGAAGA+AGG - chr1_4:19510055-19510074 None:intergenic 35.0%
TACAACTCAACTCAATAAGG+TGG - chr1_4:19510157-19510176 None:intergenic 35.0%
CCATACAACTCAACTCAATA+AGG - chr1_4:19510160-19510179 None:intergenic 35.0%
!! CCTTATTGAGTTGAGTTGTA+TGG + chr1_4:19510157-19510176 Msa0154750:intron 35.0%
ACTAGTGAATGTATGGTTAG+TGG - chr1_4:19510505-19510524 None:intergenic 35.0%
ACTAACCATACATTCACTAG+TGG + chr1_4:19510504-19510523 Msa0154750:intron 35.0%
CTAACCATACATTCACTAGT+GGG + chr1_4:19510505-19510524 Msa0154750:intron 35.0%
TAACCATACATTCACTAGTG+GGG + chr1_4:19510506-19510525 Msa0154750:intron 35.0%
TATAGGAAGGTGGAAGATTA+TGG + chr1_4:19510530-19510549 Msa0154750:intron 35.0%
TTTAATGAGGTGTATCCTGA+TGG - chr1_4:19510603-19510622 None:intergenic 35.0%
! TGTACTCTTTTTCCTTTGCT+AGG - chr1_4:19510659-19510678 None:intergenic 35.0%
TGTGACAATACCATGGTTAA+GGG + chr1_4:19510726-19510745 Msa0154750:intron 35.0%
AGGGATGGTTATTTAGTTGA+GGG - chr1_4:19510781-19510800 None:intergenic 35.0%
GAGCAACTGGTATGAAAAAT+TGG - chr1_4:19510817-19510836 None:intergenic 35.0%
GCATTGCACAGTTGAAATAA+TGG - chr1_4:19510925-19510944 None:intergenic 35.0%
AACAACACACTCTCTTTGAT+TGG + chr1_4:19511102-19511121 Msa0154750:intron 35.0%
ACATGGGTCCCATATAAATT+TGG + chr1_4:19511134-19511153 Msa0154750:intron 35.0%
GAGACCCACCAAATTTATAT+GGG - chr1_4:19511145-19511164 None:intergenic 35.0%
TGAGACCCACCAAATTTATA+TGG - chr1_4:19511146-19511165 None:intergenic 35.0%
!! CCATTTGTTGTACACTTCAA+TGG - chr1_4:19511393-19511412 None:intergenic 35.0%
CCATTGAAGTGTACAACAAA+TGG + chr1_4:19511390-19511409 Msa0154750:intron 35.0%
CCTCGGTAAAATAATTCCTT+CGG + chr1_4:19511723-19511742 Msa0154750:intron 35.0%
CTCGGTAAAATAATTCCTTC+GGG + chr1_4:19511724-19511743 Msa0154750:intron 35.0%
TCGGTAAAATAATTCCTTCG+GGG + chr1_4:19511725-19511744 Msa0154750:intron 35.0%
GATCGTGAATGAGTCAATTA+AGG - chr1_4:19511880-19511899 None:intergenic 35.0%
! AGGTACCTGATTAGTTATAC+TGG + chr1_4:19512028-19512047 Msa0154750:intron 35.0%
CAGTTCCAGTATAACTAATC+AGG - chr1_4:19512036-19512055 None:intergenic 35.0%
ATCATTAGAGAAGTCTGTGT+TGG - chr1_4:19512213-19512232 None:intergenic 35.0%
AGACTTATTTACAGCCAAGT+AGG - chr1_4:19512396-19512415 None:intergenic 35.0%
AACAATAGACGTCTGATGAA+TGG + chr1_4:19512711-19512730 Msa0154750:intron 35.0%
CAAATACTCTCACAAACTTC+TGG + chr1_4:19512837-19512856 Msa0154750:intron 35.0%
!! GTTATCTAAAGGTGTCTTGT+TGG - chr1_4:19513599-19513618 None:intergenic 35.0%
AAACTCGAGTTCTCAATTCA+AGG + chr1_4:19513713-19513732 Msa0154750:intron 35.0%
AACTCGAGTTCTCAATTCAA+GGG + chr1_4:19513714-19513733 Msa0154750:intron 35.0%
AAAAACATAGCGAGAGTTTC+AGG + chr1_4:19513748-19513767 Msa0154750:intron 35.0%
! ACTCAATTTTGCGGAATACA+TGG + chr1_4:19513795-19513814 Msa0154750:intron 35.0%
! CTCAATTTTGCGGAATACAT+GGG + chr1_4:19513796-19513815 Msa0154750:intron 35.0%
!! TAATTCGTGAGCCATTTTGT+CGG + chr1_4:19513869-19513888 Msa0154750:intron 35.0%
! CCTTTCTGTGTATGAGTTTT+TGG - chr1_4:19514136-19514155 None:intergenic 35.0%
CCAAAAACTCATACACAGAA+AGG + chr1_4:19514133-19514152 Msa0154750:intron 35.0%
! ACGGAGGGAGTATAAATTAA+AGG - chr1_4:19514441-19514460 None:intergenic 35.0%
TGATATGATACACGTGAAGA+TGG - chr1_4:19514840-19514859 None:intergenic 35.0%
!!! AGCTAGCAAATTTTTTACGC+AGG + chr1_4:19515026-19515045 Msa0154750:intron 35.0%
!!! GCTAGCAAATTTTTTACGCA+GGG + chr1_4:19515027-19515046 Msa0154750:intron 35.0%
!!! CTAGCAAATTTTTTACGCAG+GGG + chr1_4:19515028-19515047 Msa0154750:intron 35.0%
!!! TATAATTTTTGGGGTAGCCA+AGG + chr1_4:19515573-19515592 Msa0154750:intron 35.0%
GAAACAATTGCACTTATCAG+GGG - chr1_4:19515625-19515644 None:intergenic 35.0%
CTGAAACAATTGCACTTATC+AGG - chr1_4:19515627-19515646 None:intergenic 35.0%
TTCTAGTGACTGATAAGTCT+CGG - chr1_4:19515790-19515809 None:intergenic 35.0%
GTATCAATATTACCTCTCAG+TGG + chr1_4:19515841-19515860 Msa0154750:intron 35.0%
AGTAGTGTTGTACAGTACAA+AGG - chr1_4:19515879-19515898 None:intergenic 35.0%
GTACTGTACAACACTACTAT+TGG + chr1_4:19515881-19515900 Msa0154750:intron 35.0%
TGATCAAAGATAGAGAATGC+TGG + chr1_4:19515989-19516008 Msa0154750:intron 35.0%
AAAACCACTAACCATACGTT+AGG + chr1_4:19516042-19516061 Msa0154750:intron 35.0%
AAACCACTAACCATACGTTA+GGG + chr1_4:19516043-19516062 Msa0154750:intron 35.0%
CTAGTTCCCAGATCATAAAA+AGG - chr1_4:19516178-19516197 None:intergenic 35.0%
GAAAGAAAACACTGCATGTT+AGG + chr1_4:19516199-19516218 Msa0154750:intron 35.0%
AGAACAAGTCTCTCAAAAAC+AGG - chr1_4:19516297-19516316 None:intergenic 35.0%
TAAGAATAGCGATACAGTGT+CGG - chr1_4:19516370-19516389 None:intergenic 35.0%
GAACCCTAAAATTGAGAAAG+GGG + chr1_4:19516428-19516447 Msa0154750:intron 35.0%
AACCCTAAAATTGAGAAAGG+GGG + chr1_4:19516429-19516448 Msa0154750:intron 35.0%
! TTCCCCCTTTCTCAATTTTA+GGG - chr1_4:19516434-19516453 None:intergenic 35.0%
! ATTCCCCCTTTCTCAATTTT+AGG - chr1_4:19516435-19516454 None:intergenic 35.0%
TACAAAGAACAAAGACACAG+TGG + chr1_4:19516652-19516671 Msa0154750:intron 35.0%
AGTGGCATGCAAAAAATCAA+TGG - chr1_4:19516800-19516819 None:intergenic 35.0%
AATGAGAGAAACTTTGCACT+AGG - chr1_4:19516907-19516926 None:intergenic 35.0%
! AGCTGTATTGTTGTTGACAT+GGG - chr1_4:19517338-19517357 None:intergenic 35.0%
!! ACTTGAGTTGAGTCTTTGAA+AGG + chr1_4:19517530-19517549 Msa0154750:intron 35.0%
! AGTTGAGTCTTTGAAAGGTT+TGG + chr1_4:19517535-19517554 Msa0154750:intron 35.0%
CTGGATGAGAATCAAGTAAA+TGG - chr1_4:19517640-19517659 None:intergenic 35.0%
AAATACTACAACAGCAGTTC+TGG + chr1_4:19517941-19517960 Msa0154750:CDS 35.0%
TGGTGTTTGTTTAAACCACT+TGG - chr1_4:19518026-19518045 None:intergenic 35.0%
TGATTGTTAGGTTTGTGTTG+TGG - chr1_4:19518046-19518065 None:intergenic 35.0%
GCTATCTCTTGTTACAAAGA+TGG - chr1_4:19518195-19518214 None:intergenic 35.0%
! TTGAGATTTTGTCCTTAACC+GGG + chr1_4:19518399-19518418 Msa0154750:CDS 35.0%
AAGTCTCTCATAAGTAGCAT+TGG - chr1_4:19518567-19518586 None:intergenic 35.0%
TCATTATCATCGTCATCAAG+TGG - chr1_4:19518590-19518609 None:intergenic 35.0%
AATGATAATAATGAAGGGCC+TGG + chr1_4:19518605-19518624 Msa0154750:CDS 35.0%
! TTATACAAAGGCATGGAAGA+AGG - chr1_4:19518719-19518738 None:intergenic 35.0%
TGGCAAATTATACAAAGGCA+TGG - chr1_4:19518726-19518745 None:intergenic 35.0%
!! AATGAAAAGCCTAGTTCTGC+GGG + chr1_4:19509950-19509969 Msa0154750:CDS 40.0%
AACTGATGACCAATTCTCGA+TGG - chr1_4:19510013-19510032 None:intergenic 40.0%
GAGAATTGGTCATCAGTTGT+AGG + chr1_4:19510015-19510034 Msa0154750:intron 40.0%
! AAAGGCATGGAAGAAGGATA+TGG - chr1_4:19510049-19510068 None:intergenic 40.0%
TCAATAAGGTGGTCTTCCAT+GGG - chr1_4:19510146-19510165 None:intergenic 40.0%
GTATTGTGAAGAAGACTGTG+AGG + chr1_4:19510267-19510286 Msa0154750:intron 40.0%
TAACCCCACTAGTGAATGTA+TGG - chr1_4:19510512-19510531 None:intergenic 40.0%
ACATTCACTAGTGGGGTTAT+AGG + chr1_4:19510513-19510532 Msa0154750:intron 40.0%
! ATTGTCACACTAGGTTTTCC+TGG - chr1_4:19510715-19510734 None:intergenic 40.0%
AACCTAGTGTGACAATACCA+TGG + chr1_4:19510719-19510738 Msa0154750:intron 40.0%
AACCATGGTATTGTCACACT+AGG - chr1_4:19510724-19510743 None:intergenic 40.0%
GTGTGACAATACCATGGTTA+AGG + chr1_4:19510725-19510744 Msa0154750:intron 40.0%
! GAACTCTTTTCCCTTAACCA+TGG - chr1_4:19510739-19510758 None:intergenic 40.0%
GGATGGTTATTTAGTTGAGG+GGG - chr1_4:19510779-19510798 None:intergenic 40.0%
GGGATGGTTATTTAGTTGAG+GGG - chr1_4:19510780-19510799 None:intergenic 40.0%
CAGGGATGGTTATTTAGTTG+AGG - chr1_4:19510782-19510801 None:intergenic 40.0%
ACTAAATAACCATCCCTGAG+AGG + chr1_4:19510784-19510803 Msa0154750:intron 40.0%
!! AATTGGTCTTCATCCTCTCA+GGG - chr1_4:19510800-19510819 None:intergenic 40.0%
!! AAATTGGTCTTCATCCTCTC+AGG - chr1_4:19510801-19510820 None:intergenic 40.0%
TGGGTCCCATATAAATTTGG+TGG + chr1_4:19511137-19511156 Msa0154750:intron 40.0%
GGGTCCCATATAAATTTGGT+GGG + chr1_4:19511138-19511157 Msa0154750:intron 40.0%
!! CCGAAGGAATTATTTTACCG+AGG - chr1_4:19511726-19511745 None:intergenic 40.0%
GATAGATTGCAACTTTCACG+TGG + chr1_4:19511810-19511829 Msa0154750:intron 40.0%
TATAGTCAAGATGACCCAAC+CGG + chr1_4:19513158-19513177 Msa0154750:intron 40.0%
TATTGTTGACAAGACCGGTT+GGG - chr1_4:19513175-19513194 None:intergenic 40.0%
TTATTGTTGACAAGACCGGT+TGG - chr1_4:19513176-19513195 None:intergenic 40.0%
GAGTTTCAGGAATAAGCAAG+TGG + chr1_4:19513761-19513780 Msa0154750:intron 40.0%
!! AATTCGTGAGCCATTTTGTC+GGG + chr1_4:19513870-19513889 Msa0154750:intron 40.0%
AGAGTTAATGTTCCACTGAG+AGG - chr1_4:19515856-19515875 None:intergenic 40.0%
AACCACTAACCATACGTTAG+GGG + chr1_4:19516044-19516063 Msa0154750:intron 40.0%
!! TTGTTTGTTATCACCGTCGT+TGG - chr1_4:19516491-19516510 None:intergenic 40.0%
ATGACAGTCAGAGATAGTCA+TGG + chr1_4:19516557-19516576 Msa0154750:intron 40.0%
AAAGAACAAAGACACAGTGG+TGG + chr1_4:19516655-19516674 Msa0154750:intron 40.0%
TTGCTCAGATGTATGACAAG+TGG - chr1_4:19516818-19516837 None:intergenic 40.0%
ACTTGTCATACATCTGAGCA+AGG + chr1_4:19516817-19516836 Msa0154750:intron 40.0%
CTTGTCATACATCTGAGCAA+GGG + chr1_4:19516818-19516837 Msa0154750:intron 40.0%
! GCTGTATTGTTGTTGACATG+GGG - chr1_4:19517337-19517356 None:intergenic 40.0%
! GAGCTGTATTGTTGTTGACA+TGG - chr1_4:19517339-19517358 None:intergenic 40.0%
TGATAGGGTAAAGGAAAGTG+AGG - chr1_4:19517692-19517711 None:intergenic 40.0%
GTGAGTGAGCATCTTATGTT+AGG + chr1_4:19517732-19517751 Msa0154750:intron 40.0%
! AATCCTTGGTGGACAATTCA+AGG + chr1_4:19517966-19517985 Msa0154750:CDS 40.0%
ACAATTCAAGGAGGGTTATC+TGG + chr1_4:19517978-19517997 Msa0154750:CDS 40.0%
CAATTCAAGGAGGGTTATCT+GGG + chr1_4:19517979-19517998 Msa0154750:CDS 40.0%
AATTCAAGGAGGGTTATCTG+GGG + chr1_4:19517980-19517999 Msa0154750:CDS 40.0%
! GTTTAAACCACTTGGTGAGT+GGG - chr1_4:19518018-19518037 None:intergenic 40.0%
! TGTTTAAACCACTTGGTGAG+TGG - chr1_4:19518019-19518038 None:intergenic 40.0%
AACAGAGATGAACCTAGAGA+AGG + chr1_4:19518101-19518120 Msa0154750:CDS 40.0%
!!! TTTGGTCTGTTTTTGGATCC+AGG - chr1_4:19518167-19518186 None:intergenic 40.0%
! GTTACAAAGATGGGTGGTTT+TGG - chr1_4:19518185-19518204 None:intergenic 40.0%
TCTCTTGTTACAAAGATGGG+TGG - chr1_4:19518191-19518210 None:intergenic 40.0%
! CATGGCTCTTCAAAGCATTT+GGG - chr1_4:19518217-19518236 None:intergenic 40.0%
! ACATGGCTCTTCAAAGCATT+TGG - chr1_4:19518218-19518237 None:intergenic 40.0%
AGCTGATATAGCAGAAAGTG+TGG + chr1_4:19518256-19518275 Msa0154750:CDS 40.0%
!! AACTGGTCTTACAGTGTACT+TGG + chr1_4:19518454-19518473 Msa0154750:CDS 40.0%
!! AGTAGCATTGGTAAACGTAG+CGG - chr1_4:19518555-19518574 None:intergenic 40.0%
TGATGACCAATTCTCGATGG+AGG - chr1_4:19510010-19510029 None:intergenic 45.0%
ATTGGTCATCAGTTGTAGGG+TGG + chr1_4:19510019-19510038 Msa0154750:intron 45.0%
! CCTAATAATGGAGGGCAGAT+GGG + chr1_4:19510094-19510113 Msa0154750:intron 45.0%
CTCAATAAGGTGGTCTTCCA+TGG - chr1_4:19510147-19510166 None:intergenic 45.0%
TCACTAGTGGGGTTATAGGA+AGG + chr1_4:19510517-19510536 Msa0154750:intron 45.0%
GGAAGGTGGAAGATTATGGA+TGG + chr1_4:19510534-19510553 Msa0154750:intron 45.0%
TCATTCATAACACTCCCCCT+TGG + chr1_4:19510573-19510592 Msa0154750:intron 45.0%
! TATCCTGATGGACATCCAAG+GGG - chr1_4:19510591-19510610 None:intergenic 45.0%
! GTATCCTGATGGACATCCAA+GGG - chr1_4:19510592-19510611 None:intergenic 45.0%
! TGTATCCTGATGGACATCCA+AGG - chr1_4:19510593-19510612 None:intergenic 45.0%
AGGAAAAGAGTCGCTCGTTT+GGG - chr1_4:19512974-19512993 None:intergenic 45.0%
TTTGCGGAATACATGGGAAG+TGG + chr1_4:19513802-19513821 Msa0154750:intron 45.0%
GCTCACGAATTATTCACGAG+TGG - chr1_4:19513861-19513880 None:intergenic 45.0%
ACTAACCATACGTTAGGGGA+CGG + chr1_4:19516048-19516067 Msa0154750:intron 45.0%
ACACTCCTGACATTGCAAGT+TGG + chr1_4:19516100-19516119 Msa0154750:intron 45.0%
CTACTCCAACTTGCAATGTC+AGG - chr1_4:19516108-19516127 None:intergenic 45.0%
TCGAGGGAAGTAGAAAACGT+GGG - chr1_4:19516336-19516355 None:intergenic 45.0%
AGAAAGGGGGAATATGCAGT+GGG + chr1_4:19516442-19516461 Msa0154750:intron 45.0%
ACAACACCATCTGTTTGACG+CGG + chr1_4:19516507-19516526 Msa0154750:intron 45.0%
AGTGAAGCAGAAAACGTGAG+AGG + chr1_4:19516727-19516746 Msa0154750:intron 45.0%
GTGAAGCAGAAAACGTGAGA+GGG + chr1_4:19516728-19516747 Msa0154750:intron 45.0%
AAAACGTGAGAGGGAGAAGA+AGG + chr1_4:19516737-19516756 Msa0154750:intron 45.0%
AAACGTGAGAGGGAGAAGAA+GGG + chr1_4:19516738-19516757 Msa0154750:intron 45.0%
AGAAGAAGGGGAACAGTGAA+AGG + chr1_4:19516751-19516770 Msa0154750:intron 45.0%
! CTTGGTGGACAATTCAAGGA+GGG + chr1_4:19517970-19517989 Msa0154750:CDS 45.0%
ACTTCAACTGCACCTTCTCT+AGG - chr1_4:19518116-19518135 None:intergenic 45.0%
! AGAGAAGGTGCAGTTGAAGT+TGG + chr1_4:19518116-19518135 Msa0154750:CDS 45.0%
!!! GGGTGGTTTTGGTCTGTTTT+TGG - chr1_4:19518174-19518193 None:intergenic 45.0%
!! TGCTTTGAAGAGCCATGTCA+TGG + chr1_4:19518220-19518239 Msa0154750:CDS 45.0%
TTCTGCTATATCAGCTCCAC+CGG - chr1_4:19518252-19518271 None:intergenic 45.0%
GTTTGTGTTCTCAGTGGAAG+TGG + chr1_4:19518308-19518327 Msa0154750:CDS 45.0%
CTGTTGTAGCACTTCATGGT+AGG + chr1_4:19518375-19518394 Msa0154750:CDS 45.0%
AGGTAGAAAAGTCCCGGTTA+AGG - chr1_4:19518414-19518433 None:intergenic 45.0%
! TTAACCGGGACTTTTCTACC+TGG + chr1_4:19518413-19518432 Msa0154750:CDS 45.0%
ACTGTAAGACCAGTTGAACC+TGG - chr1_4:19518449-19518468 None:intergenic 45.0%
GTAGTTGGAGGTTGTGTTGT+TGG + chr1_4:19518494-19518513 Msa0154750:CDS 45.0%
GTTGGAACTCTTGTTGCAGT+TGG + chr1_4:19518512-19518531 Msa0154750:CDS 45.0%
AACTGATGACCAATTCCTGG+TGG - chr1_4:19518677-19518696 None:intergenic 45.0%
TGCAACTGATGACCAATTCC+TGG - chr1_4:19518680-19518699 None:intergenic 45.0%
AGGAATTGGTCATCAGTTGC+AGG + chr1_4:19518679-19518698 Msa0154750:CDS 45.0%
GGAATTGGTCATCAGTTGCA+GGG + chr1_4:19518680-19518699 Msa0154750:CDS 45.0%
! AAAGGCATGGAAGAAGGATC+TGG - chr1_4:19518713-19518732 None:intergenic 45.0%
! CCTAATAATGGAGGGCAGAT+GGG + chr1_4:19510094-19510113 Msa0154750:intron 45.0%
!!! TTATATCATAATTATTTTTT+TGG - chr1_4:19514347-19514366 None:intergenic 5.0%
!! AAAAAATAATTATGATATAA+AGG + chr1_4:19514347-19514366 Msa0154750:intron 5.0%
! GCCTAATAATGGAGGGCAGA+TGG + chr1_4:19510093-19510112 Msa0154750:intron 50.0%
CCCATCTGCCCTCCATTATT+AGG - chr1_4:19510097-19510116 None:intergenic 50.0%
CTAGTGGGGTTATAGGAAGG+TGG + chr1_4:19510520-19510539 Msa0154750:intron 50.0%
! ATCCTGATGGACATCCAAGG+GGG - chr1_4:19510590-19510609 None:intergenic 50.0%
TCTCAAATTCGCCTGAAGCG+TGG - chr1_4:19512168-19512187 None:intergenic 50.0%
CTCCTCTAAGCGCATTGCAT+TGG + chr1_4:19512490-19512509 Msa0154750:intron 50.0%
CTCCAATGCAATGCGCTTAG+AGG - chr1_4:19512495-19512514 None:intergenic 50.0%
GGAAAAGAGTCGCTCGTTTG+GGG - chr1_4:19512973-19512992 None:intergenic 50.0%
GAGGAAAAGAGTCGCTCGTT+TGG - chr1_4:19512975-19512994 None:intergenic 50.0%
CGGAATACATGGGAAGTGGT+GGG + chr1_4:19513806-19513825 Msa0154750:intron 50.0%
GGAATACATGGGAAGTGGTG+GGG + chr1_4:19513807-19513826 Msa0154750:intron 50.0%
!! AAATTTGCTAGCTTCGCCGC+TGG - chr1_4:19515019-19515038 None:intergenic 50.0%
TCATTGACAAGGGGTAGCCT+TGG - chr1_4:19515593-19515612 None:intergenic 50.0%
AGGCTACCCCTTGTCAATGA+AGG + chr1_4:19515593-19515612 Msa0154750:intron 50.0%
GGCTACCCCTTGTCAATGAA+GGG + chr1_4:19515594-19515613 Msa0154750:intron 50.0%
CGTAGCCCTTCATTGACAAG+GGG - chr1_4:19515602-19515621 None:intergenic 50.0%
GCGTAGCCCTTCATTGACAA+GGG - chr1_4:19515603-19515622 None:intergenic 50.0%
GTCCCCTAACGTATGGTTAG+TGG - chr1_4:19516049-19516068 None:intergenic 50.0%
GGGAAGTAGAAAACGTGGGA+GGG - chr1_4:19516332-19516351 None:intergenic 50.0%
AGGGAAGTAGAAAACGTGGG+AGG - chr1_4:19516333-19516352 None:intergenic 50.0%
GTCGAGGGAAGTAGAAAACG+TGG - chr1_4:19516337-19516356 None:intergenic 50.0%
GAGAAAGGGGGAATATGCAG+TGG + chr1_4:19516441-19516460 Msa0154750:intron 50.0%
CTAACTCCACGATCCAACGA+CGG + chr1_4:19516475-19516494 Msa0154750:intron 50.0%
TTATCACCGTCGTTGGATCG+TGG - chr1_4:19516484-19516503 None:intergenic 50.0%
GAACAAAGACACAGTGGTGG+TGG + chr1_4:19516658-19516677 Msa0154750:intron 50.0%
! CGTTTTCTGCTTCACTCCTG+CGG - chr1_4:19516723-19516742 None:intergenic 50.0%
AACGTGAGAGGGAGAAGAAG+GGG + chr1_4:19516739-19516758 Msa0154750:intron 50.0%
TGAGCAAGGGACTCAGAAAC+TGG + chr1_4:19516831-19516850 Msa0154750:intron 50.0%
! CAGCAGTTCTGGCTAATCCT+TGG + chr1_4:19517952-19517971 Msa0154750:CDS 50.0%
! CAGTTCTGGCTAATCCTTGG+TGG + chr1_4:19517955-19517974 Msa0154750:CDS 50.0%
CCTCCTTGAATTGTCCACCA+AGG - chr1_4:19517972-19517991 None:intergenic 50.0%
! CCTTGGTGGACAATTCAAGG+AGG + chr1_4:19517969-19517988 Msa0154750:CDS 50.0%
!! GTTGGTAACCGAAGACCAAG+AGG + chr1_4:19518134-19518153 Msa0154750:CDS 50.0%
! GTGGTCTTCCTCTTGGTCTT+CGG - chr1_4:19518145-19518164 None:intergenic 50.0%
!!! GGTCTGTTTTTGGATCCAGG+TGG - chr1_4:19518164-19518183 None:intergenic 50.0%
AGCCATGTCATGGAAGTAGC+CGG + chr1_4:19518230-19518249 Msa0154750:CDS 50.0%
GTGTGGCACAATTCGCAAGA+AGG + chr1_4:19518273-19518292 Msa0154750:CDS 50.0%
CTTAGACAACCTTCAGCTCC+TGG + chr1_4:19518350-19518369 Msa0154750:CDS 50.0%
! TGAAGTGCTACAACAGCACC+AGG - chr1_4:19518371-19518390 None:intergenic 50.0%
!! GGTGCTGTTGTAGCACTTCA+TGG + chr1_4:19518371-19518390 Msa0154750:CDS 50.0%
AGGACCAGGTAGAAAAGTCC+CGG - chr1_4:19518420-19518439 None:intergenic 50.0%
GTAAGACCAGTTGAACCTGG+TGG - chr1_4:19518446-19518465 None:intergenic 50.0%
GGTCTTACAGTGTACTTGGC+TGG + chr1_4:19518458-19518477 Msa0154750:CDS 50.0%
CTTACAGTGTACTTGGCTGG+AGG + chr1_4:19518461-19518480 Msa0154750:CDS 50.0%
!! TAATGAAGGGCCTGGTTCTG+CGG + chr1_4:19518613-19518632 Msa0154750:CDS 50.0%
TGATGACCAATTCCTGGTGG+AGG - chr1_4:19518674-19518693 None:intergenic 50.0%
ATTGGTCATCAGTTGCAGGG+TGG + chr1_4:19518683-19518702 Msa0154750:CDS 50.0%
TTGGTCATCAGTTGCAGGGT+GGG + chr1_4:19518684-19518703 Msa0154750:CDS 50.0%
! GCCTAATAATGGAGGGCAGA+TGG + chr1_4:19510093-19510112 Msa0154750:intron 50.0%
CCCATCTGCCCTCCATTATT+AGG - chr1_4:19510097-19510116 None:intergenic 50.0%
!! GAAAAGCCTAGTTCTGCGGG+AGG + chr1_4:19509953-19509972 Msa0154750:CDS 55.0%
GGATCGCCTCCATCGAGAAT+TGG + chr1_4:19510001-19510020 Msa0154750:CDS 55.0%
GGTCTTCATCCTCTCAGGGA+TGG - chr1_4:19510796-19510815 None:intergenic 55.0%
CCTGAAGCGTGGTAGACAGT+CGG - chr1_4:19512157-19512176 None:intergenic 55.0%
GCGGAATACATGGGAAGTGG+TGG + chr1_4:19513805-19513824 Msa0154750:intron 55.0%
! ATGGGAAGTGGTGGGGTACA+TGG + chr1_4:19513814-19513833 Msa0154750:intron 55.0%
! TGGGAAGTGGTGGGGTACAT+GGG + chr1_4:19513815-19513834 Msa0154750:intron 55.0%
GCCATCTGCATAAGTGCCAG+CGG + chr1_4:19515000-19515019 Msa0154750:intron 55.0%
GGCGTAGCCCTTCATTGACA+AGG - chr1_4:19515604-19515623 None:intergenic 55.0%
AACCATACGTTAGGGGACGG+AGG + chr1_4:19516051-19516070 Msa0154750:intron 55.0%
ACCATACGTTAGGGGACGGA+GGG + chr1_4:19516052-19516071 Msa0154750:intron 55.0%
ACACCATCTGTTTGACGCGG+CGG + chr1_4:19516510-19516529 Msa0154750:intron 55.0%
CGGCGGAGGTAACATCATGT+CGG + chr1_4:19516527-19516546 Msa0154750:intron 55.0%
CGGAGGTAACATCATGTCGG+AGG + chr1_4:19516530-19516549 Msa0154750:intron 55.0%
!! GACACAGTGGTGGTGGATCA+CGG + chr1_4:19516665-19516684 Msa0154750:intron 55.0%
GGCGGAGTGATTGACCTTCA+CGG + chr1_4:19516686-19516705 Msa0154750:intron 55.0%
! CACTTGGTGAGTGGGTTCCT+GGG - chr1_4:19518010-19518029 None:intergenic 55.0%
AGACCAAGAGGAAGACCACC+TGG + chr1_4:19518146-19518165 Msa0154750:CDS 55.0%
GATCCAGGTGGTCTTCCTCT+TGG - chr1_4:19518152-19518171 None:intergenic 55.0%
! CACCGGCTACTTCCATGACA+TGG - chr1_4:19518235-19518254 None:intergenic 55.0%
CATGTCATGGAAGTAGCCGG+TGG + chr1_4:19518233-19518252 Msa0154750:CDS 55.0%
!! TTCGCAAGAAGGCGTCAACG+CGG + chr1_4:19518284-19518303 Msa0154750:CDS 55.0%
CGCGGTGTTTGTGTTCTCAG+TGG + chr1_4:19518302-19518321 Msa0154750:CDS 55.0%
ACAACAGCACCAGGAGCTGA+AGG - chr1_4:19518362-19518381 None:intergenic 55.0%
AGTGTACTTGGCTGGAGGTC+AGG + chr1_4:19518466-19518485 Msa0154750:CDS 55.0%
GTGTACTTGGCTGGAGGTCA+GGG + chr1_4:19518467-19518486 Msa0154750:CDS 55.0%
!! AATGAAGGGCCTGGTTCTGC+GGG + chr1_4:19518614-19518633 Msa0154750:CDS 55.0%
TGCACACCTCCCGCAGAACT+AGG - chr1_4:19509962-19509981 None:intergenic 60.0%
! AGTTCTGCGGGAGGTGTGCA+AGG + chr1_4:19509962-19509981 Msa0154750:CDS 60.0%
!! GTGCAAGGTGGAGGAGCATC+TGG + chr1_4:19509977-19509996 Msa0154750:CDS 60.0%
!! CAAGGTGGAGGAGCATCTGG+TGG + chr1_4:19509980-19509999 Msa0154750:CDS 60.0%
TGGAGGGCAGATGGGACATG+AGG + chr1_4:19510102-19510121 Msa0154750:intron 60.0%
TGGGACATGAGGCCCTTGAC+TGG + chr1_4:19510113-19510132 Msa0154750:intron 60.0%
GGGACATGAGGCCCTTGACT+GGG + chr1_4:19510114-19510133 Msa0154750:intron 60.0%
ATGGGCAGCAGCCCAGTCAA+GGG - chr1_4:19510128-19510147 None:intergenic 60.0%
CTCCCCCTTGGATGTCCATC+AGG + chr1_4:19510585-19510604 Msa0154750:intron 60.0%
CCGACTGTCTACCACGCTTC+AGG + chr1_4:19512154-19512173 Msa0154750:intron 60.0%
! GTGGTGGGGTACATGGGAAG+TGG + chr1_4:19513821-19513840 Msa0154750:intron 60.0%
GCCGCTGGCACTTATGCAGA+TGG - chr1_4:19515004-19515023 None:intergenic 60.0%
TCCCTCCGTCCCCTAACGTA+TGG - chr1_4:19516056-19516075 None:intergenic 60.0%
GTCGGCGATGAAGCAGTCGA+GGG - chr1_4:19516352-19516371 None:intergenic 60.0%
TGTCGGCGATGAAGCAGTCG+AGG - chr1_4:19516353-19516372 None:intergenic 60.0%
!! ACAGTGGTGGTGGATCACGG+CGG + chr1_4:19516668-19516687 Msa0154750:intron 60.0%
! GGGTTATCTGGGGTTGACCC+AGG + chr1_4:19517990-19518009 Msa0154750:CDS 60.0%
! CCACTTGGTGAGTGGGTTCC+TGG - chr1_4:19518011-19518030 None:intergenic 60.0%
CCAGGAACCCACTCACCAAG+TGG + chr1_4:19518008-19518027 Msa0154750:CDS 60.0%
CCAGTTGAACCTGGTGGAGC+AGG - chr1_4:19518440-19518459 None:intergenic 60.0%
CCTGCTCCACCAGGTTCAAC+TGG + chr1_4:19518437-19518456 Msa0154750:CDS 60.0%
GGAGGTCAGGGTCAGGTAGT+TGG + chr1_4:19518479-19518498 Msa0154750:CDS 60.0%
GGTCAGGGTCAGGTAGTTGG+AGG + chr1_4:19518482-19518501 Msa0154750:CDS 60.0%
GGATCGCCTCCACCAGGAAT+TGG + chr1_4:19518665-19518684 Msa0154750:CDS 60.0%
TGGAGGGCAGATGGGACATG+AGG + chr1_4:19510102-19510121 Msa0154750:intron 60.0%
TGGGACATGAGGCTCTTGCC+TGG + chr1_4:19518777-19518796 Msa0154750:CDS 60.0%
GGGACATGAGGCTCTTGCCT+GGG + chr1_4:19518778-19518797 Msa0154750:CDS 60.0%
TCTTCCATGAGCAGCAGCCC+AGG - chr1_4:19518798-19518817 None:intergenic 60.0%
! TCTGCGGGAGGTGTGCAAGG+TGG + chr1_4:19509965-19509984 Msa0154750:CDS 65.0%
CATGGGCAGCAGCCCAGTCA+AGG - chr1_4:19510129-19510148 None:intergenic 65.0%
CTTGACTGGGCTGCTGCCCA+TGG + chr1_4:19510127-19510146 Msa0154750:intron 65.0%
CCTCCGCCGCGTCAAACAGA+TGG - chr1_4:19516516-19516535 None:intergenic 65.0%
CCATCTGTTTGACGCGGCGG+AGG + chr1_4:19516513-19516532 Msa0154750:intron 65.0%
! CGGCTTAAGCGCTGCCGTGA+AGG - chr1_4:19516703-19516722 None:intergenic 65.0%
CTACCTGGTCCTGCTCCACC+AGG + chr1_4:19518428-19518447 Msa0154750:CDS 65.0%
GAACCTGGTGGAGCAGGACC+AGG - chr1_4:19518434-19518453 None:intergenic 65.0%
CTTGGCTGGAGGTCAGGGTC+AGG + chr1_4:19518472-19518491 Msa0154750:CDS 65.0%
TGCACACCTCCCGCAGAACC+AGG - chr1_4:19518626-19518645 None:intergenic 65.0%
! GGTTCTGCGGGAGGTGTGCA+AGG + chr1_4:19518626-19518645 Msa0154750:CDS 65.0%
! TCTGCGGGAGGTGTGCAAGG+TGG + chr1_4:19509965-19509984 Msa0154750:CDS 65.0%
!! GTGCAAGGTGGAGGAGCGTC+TGG + chr1_4:19518641-19518660 Msa0154750:CDS 65.0%
!! CAAGGTGGAGGAGCGTCTGG+TGG + chr1_4:19518644-19518663 Msa0154750:CDS 65.0%
! TCTGGTGGATCGCCTCCACC+AGG + chr1_4:19518659-19518678 Msa0154750:CDS 65.0%
CTTGCCTGGGCTGCTGCTCA+TGG + chr1_4:19518791-19518810 Msa0154750:CDS 65.0%
! GCGGGAGGTGTGCAAGGTGG+AGG + chr1_4:19509968-19509987 Msa0154750:CDS 70.0%
CACGGCAGCGCTTAAGCCGC+AGG + chr1_4:19516704-19516723 Msa0154750:intron 70.0%
!! GAAGGGCCTGGTTCTGCGGG+AGG + chr1_4:19518617-19518636 Msa0154750:CDS 70.0%
! GCGGGAGGTGTGCAAGGTGG+AGG + chr1_4:19509968-19509987 Msa0154750:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 19509878 19518829 19509878 ID=Msa0154750;Name=Msa0154750
chr1_4 mRNA 19509878 19518829 19509878 ID=Msa0154750-mRNA-1;Parent=Msa0154750;Name=Msa0154750-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0|0|0|1|0|0|2|0|367
chr1_4 exon 19509878 19510032 19509878 ID=Msa0154750-mRNA-1:exon:7205;Parent=Msa0154750-mRNA-1
chr1_4 exon 19517881 19518829 19517881 ID=Msa0154750-mRNA-1:exon:7206;Parent=Msa0154750-mRNA-1
chr1_4 CDS 19509878 19510032 19509878 ID=Msa0154750-mRNA-1:cds;Parent=Msa0154750-mRNA-1
chr1_4 CDS 19517881 19518829 19517881 ID=Msa0154750-mRNA-1:cds;Parent=Msa0154750-mRNA-1
Gene Sequence

>Msa0154750

ATGCTTATTGCCGCTAGTTTTACTAATGTTACTTCTGAGATACTTCCACGTGATGATGATGATAATGATAATAATGAAAAGCCTAGTTCTGCGGGAGGTGTGCAAGGTGGAGGAGCATCTGGTGGATCGCCTCCATCGAGAATTGGTCATCAGTTCTCAATTGGTTTCTCATATTCTTATAAACAAAAGCATCATAATCTTCTTCTTAAGTGTAGAAATACTACAACAGCAGTTCTGGCTAATCCTTGGTGGACAATTCAAGGAGGGTTATCTGGGGTTGACCCAGGAACCCACTCACCAAGTGGTTTAAACAAACACCACAACACAAACCTAACAATCAATGAAAATCACGATGAAGAAGAAGACGTTGACGACAACAGAGATGAACCTAGAGAAGGTGCAGTTGAAGTTGGTAACCGAAGACCAAGAGGAAGACCACCTGGATCCAAAAACAGACCAAAACCACCCATCTTTGTAACAAGAGATAGCCCAAATGCTTTGAAGAGCCATGTCATGGAAGTAGCCGGTGGAGCTGATATAGCAGAAAGTGTGGCACAATTCGCAAGAAGGCGTCAACGCGGTGTTTGTGTTCTCAGTGGAAGTGGCTCTGTAGCTAATGTTACTCTTAGACAACCTTCAGCTCCTGGTGCTGTTGTAGCACTTCATGGTAGGTTTGAGATTTTGTCCTTAACCGGGACTTTTCTACCTGGTCCTGCTCCACCAGGTTCAACTGGTCTTACAGTGTACTTGGCTGGAGGTCAGGGTCAGGTAGTTGGAGGTTGTGTTGTTGGAACTCTTGTTGCAGTTGGATCTGTTATGCTTATTGCCGCTACGTTTACCAATGCTACTTATGAGAGACTTCCACTTGATGACGATGATAATGATAATAATGAAGGGCCTGGTTCTGCGGGAGGTGTGCAAGGTGGAGGAGCGTCTGGTGGATCGCCTCCACCAGGAATTGGTCATCAGTTGCAGGGTGGGCTTCCAGATCCTTCTTCCATGCCTTTGTATAATTTGCCACCAAATTTGTTGCCTAATAATGGAGGGCAGATGGGACATGAGGCTCTTGCCTGGGCTGCTGCTCATGGAAGACCACCTTATTGA
Protein sequence

>Msa0154750

MLIAASFTNVTSEILPRDDDDNDNNEKPSSAGGVQGGGASGGSPPSRIGHQFSIGFSYSYKQKHHNLLLKCRNTTTAVLANPWWTIQGGLSGVDPGTHSPSGLNKHHNTNLTINENHDEEEDVDDNRDEPREGAVEVGNRRPRGRPPGSKNRPKPPIFVTRDSPNALKSHVMEVAGGADIAESVAQFARRRQRGVCVLSGSGSVANVTLRQPSAPGAVVALHGRFEILSLTGTFLPGPAPPGSTGLTVYLAGGQGQVVGGCVVGTLVAVGSVMLIAATFTNATYERLPLDDDDNDNNEGPGSAGGVQGGGASGGSPPPGIGHQLQGGLPDPSSMPLYNLPPNLLPNNGGQMGHEALAWAAAHGRPPY*