AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1377190


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1377190 MtrunA17_Chr2g0323031 89.695 262 6 2 1 243 1 260 4.02e-165 456
Msa1377190 MtrunA17_Chr4g0042041 54.545 242 87 6 12 243 9 237 1.46e-79 239
Msa1377190 MtrunA17_Chr2g0319301 52.675 243 83 7 12 243 9 230 5.19e-75 227
Msa1377190 MtrunA17_Chr1g0167821 48.108 185 93 3 62 243 62 246 1.51e-46 155
Msa1377190 MtrunA17_Chr4g0038511 44.330 97 53 1 91 187 9 104 1.32e-18 82.8
Msa1377190 MtrunA17_Chr1g0161461 44.565 92 50 1 93 184 82 172 1.54e-18 83.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1377190 AT5G54680.1 55.612 196 76 5 59 243 39 234 9.47e-66 204
Msa1377190 AT1G51070.1 55.440 193 78 5 59 243 34 226 1.34e-65 203
Msa1377190 AT1G51070.2 55.155 194 79 5 58 243 99 292 1.78e-64 202
Msa1377190 AT4G14410.2 50.888 169 71 5 81 243 115 277 2.54e-43 148
Msa1377190 AT4G14410.3 50.888 169 71 5 81 243 115 277 2.54e-43 148
Msa1377190 AT4G14410.1 50.888 169 71 5 81 243 121 283 3.12e-43 148
Msa1377190 AT3G23210.2 50.286 175 77 6 76 243 120 291 1.11e-40 141
Msa1377190 AT3G23210.1 50.000 174 79 5 76 243 149 320 1.91e-40 141
Msa1377190 AT3G19860.2 46.809 94 49 1 91 184 61 153 1.12e-17 81.3
Msa1377190 AT3G19860.1 46.809 94 49 1 91 184 8 100 1.30e-17 80.5
Msa1377190 AT3G19860.3 46.809 94 49 1 91 184 39 131 1.69e-17 80.5
Msa1377190 AT4G36060.4 44.792 96 52 1 89 184 27 121 3.98e-17 78.6
Msa1377190 AT4G36060.2 44.792 96 52 1 89 184 27 121 5.00e-17 78.6
Msa1377190 AT4G36060.3 44.792 96 52 1 89 184 45 139 1.02e-16 77.8
Msa1377190 AT4G36060.1 44.792 96 52 1 89 184 45 139 1.16e-16 77.8

Find 76 sgRNAs with CRISPR-Local

Find 161 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACATGATTTAAAAGGTTTA+TGG 0.124834 tig0019874:+84067 Msa1377190:intron
TCTCAGCTTCATTTCTTAAT+TGG 0.176160 tig0019874:-84172 None:intergenic
TAAGCTAACCTTGTCTGTTT+TGG 0.191189 tig0019874:-84123 None:intergenic
TATTTCTGCTGCTGATTTCA+TGG 0.212247 tig0019874:+82812 Msa1377190:CDS
TCCATTTGGCTCTATGATTA+TGG 0.214517 tig0019874:+82774 Msa1377190:CDS
TCACAATAATATTATGGATA+TGG 0.249624 tig0019874:+82734 None:intergenic
CCACTGGTGGTTCCTCCATT+TGG 0.268940 tig0019874:+82760 Msa1377190:CDS
CTCAGCTTCATTTCTTAATT+GGG 0.281253 tig0019874:-84171 None:intergenic
ATGTTATTTGAACAACAATT+TGG 0.295938 tig0019874:-85457 None:intergenic
ACTAACAACTTTGTACAATA+AGG 0.314876 tig0019874:-85177 None:intergenic
ATCACGAAGCTCTTTCTTCT+CGG 0.320152 tig0019874:-84905 None:intergenic
TTATATTTGCAGCTTGGAAA+TGG 0.339357 tig0019874:+83185 Msa1377190:intron
CACTTTCTCACGACCTGCCT+TGG 0.343619 tig0019874:-83953 None:intergenic
ATGCCTTTCATTGGTTATCC+TGG 0.370469 tig0019874:+85051 Msa1377190:CDS
TGCTAACCACTTTAAGCAAC+TGG 0.372348 tig0019874:-85141 None:intergenic
CTGCTGCTTCTGCTTTCACC+TGG 0.376252 tig0019874:+82856 Msa1377190:CDS
CACAAGCTGATGCCTTTCAT+TGG 0.397178 tig0019874:+85042 Msa1377190:CDS
GGTTCATGAAGTGTTAGATT+TGG 0.398133 tig0019874:+85264 Msa1377190:three_prime_UTR
GATGCCTCAGCCTCAGTCTC+AGG 0.418685 tig0019874:+82878 Msa1377190:CDS
AAGATATATTACCGCTTTGA+AGG 0.422144 tig0019874:-83243 None:intergenic
AACTGCCACATTGAGATTCC+AGG 0.422338 tig0019874:-85069 None:intergenic
CATGAACCACGGGTGCGAAC+TGG 0.441058 tig0019874:-85249 None:intergenic
CTCCCTGGATTCAACTGTAA+TGG 0.443647 tig0019874:+83212 Msa1377190:CDS
CGACCTCCAGTTGCTTAAAG+TGG 0.445912 tig0019874:+85135 Msa1377190:exon
TCCTTTAGCAGCCATGGCAT+TGG 0.447269 tig0019874:-85007 None:intergenic
TTTCCATTACAGTTGAATCC+AGG 0.459110 tig0019874:-83215 None:intergenic
GAAGCTAGACAAAGAAAAGT+TGG 0.461043 tig0019874:+84942 Msa1377190:CDS
ACCCTCCTTCCTCTCATATG+AGG 0.478847 tig0019874:+82913 Msa1377190:CDS
AAGCAACTGGAGGTCGAAGC+AGG 0.492222 tig0019874:-85128 None:intergenic
TCCAATGCCATGGCTGCTAA+AGG 0.493863 tig0019874:+85006 Msa1377190:CDS
TTCCATTACAGTTGAATCCA+GGG 0.496195 tig0019874:-83214 None:intergenic
TGTTCAAATCTACATGTAGT+TGG 0.502227 tig0019874:+85385 Msa1377190:three_prime_UTR
GAAGGGATAAATTGAATGAC+AGG 0.502758 tig0019874:+83977 Msa1377190:CDS
AAATTCGACAACTTCTTACA+TGG 0.505037 tig0019874:+85222 Msa1377190:three_prime_UTR
AGTTTGTCCTTTAGCAGCCA+TGG 0.506775 tig0019874:-85013 None:intergenic
AGACTGAGGCTGAGGCATCC+AGG 0.513096 tig0019874:-82874 None:intergenic
ATTTGAACACTTGAAAATTG+TGG 0.518101 tig0019874:-85371 None:intergenic
CATTGGAGAGGAAGTTAGAC+TGG 0.527913 tig0019874:-84990 None:intergenic
GCCATAATCATAGAGCCAAA+TGG 0.530360 tig0019874:-82775 None:intergenic
CTTGGAAATGGATTACTCCC+TGG 0.534671 tig0019874:+83197 Msa1377190:CDS
AGATATATTACCGCTTTGAA+GGG 0.546046 tig0019874:-83242 None:intergenic
CGCTACAGTTGATACATCAC+AGG 0.567747 tig0019874:+85101 Msa1377190:CDS
ATGGATATGGATTCCACTGG+TGG 0.573000 tig0019874:+82747 Msa1377190:CDS
AAGGACAAAGTGAATCACTT+AGG 0.573560 tig0019874:-85522 None:intergenic
AACTTTGTACAATAAGGAAG+TGG 0.574450 tig0019874:-85171 None:intergenic
TGAGCCTGAGACTGAGGCTG+AGG 0.575513 tig0019874:-82882 None:intergenic
AAGCTGAGAGGCTCAAGGAA+AGG 0.587154 tig0019874:+84186 Msa1377190:CDS
TATGCATCTAGCTCCAAGGC+AGG 0.594326 tig0019874:+83940 Msa1377190:CDS
ATCTAACACTTCATGAACCA+CGG 0.596586 tig0019874:-85260 None:intergenic
CAATGAAAGGCATCAGCTTG+TGG 0.597079 tig0019874:-85041 None:intergenic
ATGATATGAGCCTGAGACTG+AGG 0.597314 tig0019874:-82888 None:intergenic
ACCTCATATGAGAGGAAGGA+GGG 0.598698 tig0019874:-82914 None:intergenic
GGTTAGCTTATTAAATGATG+CGG 0.600148 tig0019874:+84136 Msa1377190:CDS
AGTCACCTCATATGAGAGGA+AGG 0.600170 tig0019874:-82918 None:intergenic
ATTCCAGGATAACCAATGAA+AGG 0.600579 tig0019874:-85054 None:intergenic
GGTTAACCAGTTCGCACCCG+TGG 0.600674 tig0019874:+85243 Msa1377190:three_prime_UTR
TCTAACACTTCATGAACCAC+GGG 0.603321 tig0019874:-85259 None:intergenic
AAATGAAGCTGAGAGGCTCA+AGG 0.603831 tig0019874:+84181 Msa1377190:CDS
ATTAAATGATGCGGTTCGAG+TGG 0.605944 tig0019874:+84145 Msa1377190:CDS
CCAAATGGAGGAACCACCAG+TGG 0.607270 tig0019874:-82760 None:intergenic
TAACTTCCTCTCCAATGCCA+TGG 0.610860 tig0019874:+84996 Msa1377190:CDS
ATTATGGATATGGATTCCAC+TGG 0.611334 tig0019874:+82744 None:intergenic
ATCATATGCATCTAGCTCCA+AGG 0.614949 tig0019874:+83936 Msa1377190:CDS
TCAAAGTCACCTCATATGAG+AGG 0.629158 tig0019874:-82922 None:intergenic
TAGCAGCCATGGCATTGGAG+AGG 0.631338 tig0019874:-85002 None:intergenic
TGTGATGTATCAACTGTAGC+GGG 0.634621 tig0019874:-85099 None:intergenic
AGGTCGTGAGAAAGTGCGAA+GGG 0.647351 tig0019874:+83960 Msa1377190:CDS
CAGGTCGTGAGAAAGTGCGA+AGG 0.654075 tig0019874:+83959 Msa1377190:CDS
TAACCACTTTAAGCAACTGG+AGG 0.675285 tig0019874:-85138 None:intergenic
ATAATCATAGAGCCAAATGG+AGG 0.683773 tig0019874:-82772 None:intergenic
CACCTCATATGAGAGGAAGG+AGG 0.683814 tig0019874:-82915 None:intergenic
TACGCTGCCCAAAACAGACA+AGG 0.685974 tig0019874:+84115 Msa1377190:CDS
CTGTGATGTATCAACTGTAG+CGG 0.693038 tig0019874:-85100 None:intergenic
AATTAAGAAATGAAGCTGAG+AGG 0.714845 tig0019874:+84174 Msa1377190:CDS
GTTATCCTGGAATCTCAATG+TGG 0.748590 tig0019874:+85064 Msa1377190:CDS
TGGAAAGTAACCCTTCAAAG+CGG 0.753113 tig0019874:+83232 Msa1377190:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTGTAAAAGATATTATATA+CGG + tig0019874:83621-83640 Msa1377190:intron 10.0%
!! TTTATATAAAAGATAGATAA+AGG - tig0019874:84631-84650 None:intergenic 10.0%
!!! AATTTTAAAAACAAACAATA+AGG - tig0019874:85544-85563 None:intergenic 10.0%
!!! GTATATAATATCTTTTACAA+AGG - tig0019874:83622-83641 None:intergenic 15.0%
!!! TTTTTCTTATCTTATTATAG+TGG + tig0019874:84249-84268 Msa1377190:intron 15.0%
!! AAAATAAATAACTAGTTGAT+GGG - tig0019874:84559-84578 None:intergenic 15.0%
!! TAAAATAAATAACTAGTTGA+TGG - tig0019874:84560-84579 None:intergenic 15.0%
!!! GATTTTGAATGAATTGATTT+TGG + tig0019874:83009-83028 Msa1377190:intron 20.0%
!! TAAGTTAGACAATAAATTTG+AGG + tig0019874:83070-83089 Msa1377190:intron 20.0%
!! TAAAAGATATTATATACGGT+TGG + tig0019874:83625-83644 Msa1377190:intron 20.0%
!! TTTCAATGACATGATTTAAA+AGG + tig0019874:84060-84079 Msa1377190:intron 20.0%
!! AAGTAAACTTACTTATATGA+GGG - tig0019874:84375-84394 None:intergenic 20.0%
!! ATATAAAAGATAGATAAAGG+CGG - tig0019874:84628-84647 None:intergenic 20.0%
!! TAGTAAACTAACTAATATGA+GGG - tig0019874:84664-84683 None:intergenic 20.0%
!! ATAGTAAACTAACTAATATG+AGG - tig0019874:84665-84684 None:intergenic 20.0%
!!! ATGTTATTTGAACAACAATT+TGG - tig0019874:85460-85479 None:intergenic 20.0%
! AAAATCAATTGTAGAAACTG+CGG + tig0019874:83096-83115 Msa1377190:intron 25.0%
! AATACTTTATATTTGCAGCT+TGG + tig0019874:83179-83198 Msa1377190:intron 25.0%
! AATGTTGAACGATAAATTTG+AGG + tig0019874:83340-83359 Msa1377190:intron 25.0%
!! CTTCGAGTTAGAATTAATTA+TGG + tig0019874:83402-83421 Msa1377190:intron 25.0%
! ATTACTTTATATTAGCAGCA+TGG + tig0019874:83527-83546 Msa1377190:intron 25.0%
! AAAACAACAATGAATAGAGA+GGG - tig0019874:83868-83887 None:intergenic 25.0%
! TAATATGCAACTGTAACTTT+AGG + tig0019874:83902-83921 Msa1377190:intron 25.0%
! GACATGATTTAAAAGGTTTA+TGG + tig0019874:84067-84086 Msa1377190:intron 25.0%
! CGAAAAAGTTAAAGAACTTA+AGG + tig0019874:84223-84242 Msa1377190:CDS 25.0%
! AGTAAACTTACTTATATGAG+GGG - tig0019874:84374-84393 None:intergenic 25.0%
! CAAGTAAACTTACTTATATG+AGG - tig0019874:84376-84395 None:intergenic 25.0%
! TAAGATGATAACTAGTAGAT+AGG - tig0019874:84419-84438 None:intergenic 25.0%
! TACAAGTAGACTAAATTAAG+AGG - tig0019874:84518-84537 None:intergenic 25.0%
!!! CATAACTTTAGAATATGTTC+CGG - tig0019874:84872-84891 None:intergenic 25.0%
! ACTAACAACTTTGTACAATA+AGG - tig0019874:85180-85199 None:intergenic 25.0%
! ATTTGAACACTTGAAAATTG+TGG - tig0019874:85374-85393 None:intergenic 25.0%
AAATCAATTGTAGAAACTGC+GGG + tig0019874:83097-83116 Msa1377190:intron 30.0%
TTATATTTGCAGCTTGGAAA+TGG + tig0019874:83185-83204 Msa1377190:intron 30.0%
! AGATATATTACCGCTTTGAA+GGG - tig0019874:83245-83264 None:intergenic 30.0%
AAGATATATTACCGCTTTGA+AGG - tig0019874:83246-83265 None:intergenic 30.0%
CGAGTTAGAATTAATTATGG+TGG + tig0019874:83405-83424 Msa1377190:intron 30.0%
AACACTTCTTGAATCAAGTT+TGG + tig0019874:83441-83460 Msa1377190:intron 30.0%
TTATATTAGCAGCATGGAAA+TGG + tig0019874:83533-83552 Msa1377190:intron 30.0%
! AGATATATTACCGCTTTGAA+GGG - tig0019874:83245-83264 None:intergenic 30.0%
AAGATATATTACCGCTTTGA+AGG - tig0019874:83246-83265 None:intergenic 30.0%
AGAAAGATGACCTATATACT+CGG + tig0019874:83709-83728 Msa1377190:intron 30.0%
TCTTTAAACACCGAGTATAT+AGG - tig0019874:83722-83741 None:intergenic 30.0%
GAAAACAACAATGAATAGAG+AGG - tig0019874:83869-83888 None:intergenic 30.0%
!! GGTTAGCTTATTAAATGATG+CGG + tig0019874:84136-84155 Msa1377190:CDS 30.0%
CTCAGCTTCATTTCTTAATT+GGG - tig0019874:84174-84193 None:intergenic 30.0%
TCTCAGCTTCATTTCTTAAT+TGG - tig0019874:84175-84194 None:intergenic 30.0%
AATTAAGAAATGAAGCTGAG+AGG + tig0019874:84174-84193 Msa1377190:CDS 30.0%
!! TATTTTAGAAGCTCTGCATA+TGG - tig0019874:84780-84799 None:intergenic 30.0%
TAAAGTTATGTTTCCTTTGC+AGG + tig0019874:84882-84901 Msa1377190:intron 30.0%
AACTTTGTACAATAAGGAAG+TGG - tig0019874:85174-85193 None:intergenic 30.0%
AAATTCGACAACTTCTTACA+TGG + tig0019874:85222-85241 Msa1377190:three_prime_UTR 30.0%
TGTTCAAATCTACATGTAGT+TGG + tig0019874:85385-85404 Msa1377190:three_prime_UTR 30.0%
ATAATCATAGAGCCAAATGG+AGG - tig0019874:82775-82794 None:intergenic 35.0%
!! TCCATTTGGCTCTATGATTA+TGG + tig0019874:82774-82793 Msa1377190:CDS 35.0%
!! TATTTCTGCTGCTGATTTCA+TGG + tig0019874:82812-82831 Msa1377190:CDS 35.0%
TCAAACACGCGCAAATTTAA+GGG - tig0019874:82980-82999 None:intergenic 35.0%
ATCAAACACGCGCAAATTTA+AGG - tig0019874:82981-83000 None:intergenic 35.0%
TTCCATTACAGTTGAATCCA+GGG - tig0019874:83217-83236 None:intergenic 35.0%
TTTCCATTACAGTTGAATCC+AGG - tig0019874:83218-83237 None:intergenic 35.0%
TGAATCAAGTTTGGTTACTC+CGG + tig0019874:83450-83469 Msa1377190:intron 35.0%
TCGATCACAAAGTGTATGTT+TGG - tig0019874:83484-83503 None:intergenic 35.0%
! GATTCAACAGTACTGGAAAA+CGG + tig0019874:83567-83586 Msa1377190:intron 35.0%
TGTAACGAAGACAGAGTAAA+AGG - tig0019874:83842-83861 None:intergenic 35.0%
! GCAACTGTAACTTTAGGTTA+AGG + tig0019874:83908-83927 Msa1377190:intron 35.0%
GAAGGGATAAATTGAATGAC+AGG + tig0019874:83977-83996 Msa1377190:CDS 35.0%
! AAGCTAACCTTGTCTGTTTT+GGG - tig0019874:84125-84144 None:intergenic 35.0%
! TAAGCTAACCTTGTCTGTTT+TGG - tig0019874:84126-84145 None:intergenic 35.0%
TAGATAAAGATGTCGTCATG+TGG - tig0019874:84329-84348 None:intergenic 35.0%
!! AAAATACTCTGGAGTGGATT+TGG + tig0019874:84794-84813 Msa1377190:intron 35.0%
! TTTAGAATATGTTCCGGACT+TGG - tig0019874:84866-84885 None:intergenic 35.0%
GAAGCTAGACAAAGAAAAGT+TGG + tig0019874:84942-84961 Msa1377190:CDS 35.0%
ATTCCAGGATAACCAATGAA+AGG - tig0019874:85057-85076 None:intergenic 35.0%
ATCTAACACTTCATGAACCA+CGG - tig0019874:85263-85282 None:intergenic 35.0%
! GGTTCATGAAGTGTTAGATT+TGG + tig0019874:85264-85283 Msa1377190:three_prime_UTR 35.0%
AAGGACAAAGTGAATCACTT+AGG - tig0019874:85525-85544 None:intergenic 35.0%
GCCATAATCATAGAGCCAAA+TGG - tig0019874:82778-82797 None:intergenic 40.0%
TCAAAGTCACCTCATATGAG+AGG - tig0019874:82925-82944 None:intergenic 40.0%
TGGAAAGTAACCCTTCAAAG+CGG + tig0019874:83232-83251 Msa1377190:CDS 40.0%
! TGTATGTTTGGTTCCACTTC+CGG - tig0019874:83472-83491 None:intergenic 40.0%
CATGGAAATGGAATACTCAC+TGG + tig0019874:83545-83564 Msa1377190:intron 40.0%
! GAGTAAAAGGCGCAAATTGA+AGG - tig0019874:83829-83848 None:intergenic 40.0%
! ATCATATGCATCTAGCTCCA+AGG + tig0019874:83936-83955 Msa1377190:CDS 40.0%
ATTAAATGATGCGGTTCGAG+TGG + tig0019874:84145-84164 Msa1377190:CDS 40.0%
ACTTGTAAATGTGCTGAGCA+CGG + tig0019874:84531-84550 Msa1377190:intron 40.0%
AGATATGGTTGAGCACACAT+AGG + tig0019874:84712-84731 Msa1377190:intron 40.0%
!! GCAGAGCTTCTAAAATACTC+TGG + tig0019874:84783-84802 Msa1377190:intron 40.0%
!! GCTTCTAAAATACTCTGGAG+TGG + tig0019874:84788-84807 Msa1377190:intron 40.0%
GATTTGGACTTGTGGAACAA+AGG + tig0019874:84810-84829 Msa1377190:intron 40.0%
! ACAAAGGTCTAGTTCAGAGA+TGG + tig0019874:84826-84845 Msa1377190:intron 40.0%
ATCACGAAGCTCTTTCTTCT+CGG - tig0019874:84908-84927 None:intergenic 40.0%
! ATGCCTTTCATTGGTTATCC+TGG + tig0019874:85051-85070 Msa1377190:CDS 40.0%
GTTATCCTGGAATCTCAATG+TGG + tig0019874:85064-85083 Msa1377190:CDS 40.0%
TGTGATGTATCAACTGTAGC+GGG - tig0019874:85102-85121 None:intergenic 40.0%
CTGTGATGTATCAACTGTAG+CGG - tig0019874:85103-85122 None:intergenic 40.0%
TAACCACTTTAAGCAACTGG+AGG - tig0019874:85141-85160 None:intergenic 40.0%
TGCTAACCACTTTAAGCAAC+TGG - tig0019874:85144-85163 None:intergenic 40.0%
TCTAACACTTCATGAACCAC+GGG - tig0019874:85262-85281 None:intergenic 40.0%
ATGGATATGGATTCCACTGG+TGG + tig0019874:82747-82766 Msa1377190:CDS 45.0%
ATGATATGAGCCTGAGACTG+AGG - tig0019874:82891-82910 None:intergenic 45.0%
ACCTCATATGAGAGGAAGGA+GGG - tig0019874:82917-82936 None:intergenic 45.0%
AGTCACCTCATATGAGAGGA+AGG - tig0019874:82921-82940 None:intergenic 45.0%
!! CTTGGAAATGGATTACTCCC+TGG + tig0019874:83197-83216 Msa1377190:CDS 45.0%
CTCCCTGGATTCAACTGTAA+TGG + tig0019874:83212-83231 Msa1377190:CDS 45.0%
AAGTTTGGTTACTCCGGAAG+TGG + tig0019874:83456-83475 Msa1377190:intron 45.0%
CTCACTGGATTCAACAGTAC+TGG + tig0019874:83560-83579 Msa1377190:intron 45.0%
AAATGAAGCTGAGAGGCTCA+AGG + tig0019874:84181-84200 Msa1377190:CDS 45.0%
TAAGTTTACTTGCACCTGCG+CGG + tig0019874:84384-84403 Msa1377190:intron 45.0%
CTTGTAAATGTGCTGAGCAC+GGG + tig0019874:84532-84551 Msa1377190:intron 45.0%
! TAGATAAAGGCGGTGTCAAG+TGG - tig0019874:84618-84637 None:intergenic 45.0%
CCATATCTCGAGGTTCTCAT+TGG - tig0019874:84700-84719 None:intergenic 45.0%
CCAATGAGAACCTCGAGATA+TGG + tig0019874:84697-84716 Msa1377190:intron 45.0%
CATTGGAGAGGAAGTTAGAC+TGG - tig0019874:84993-85012 None:intergenic 45.0%
TAACTTCCTCTCCAATGCCA+TGG + tig0019874:84996-85015 Msa1377190:CDS 45.0%
AGTTTGTCCTTTAGCAGCCA+TGG - tig0019874:85016-85035 None:intergenic 45.0%
!! CAATGAAAGGCATCAGCTTG+TGG - tig0019874:85044-85063 None:intergenic 45.0%
CACAAGCTGATGCCTTTCAT+TGG + tig0019874:85042-85061 Msa1377190:CDS 45.0%
AACTGCCACATTGAGATTCC+AGG - tig0019874:85072-85091 None:intergenic 45.0%
! CGCTACAGTTGATACATCAC+AGG + tig0019874:85101-85120 Msa1377190:CDS 45.0%
!!! TATTTTATTTTTATAAAACA+CGG + tig0019874:84573-84592 Msa1377190:intron 5.0%
ACCCTCCTTCCTCTCATATG+AGG + tig0019874:82913-82932 Msa1377190:CDS 50.0%
CACCTCATATGAGAGGAAGG+AGG - tig0019874:82918-82937 None:intergenic 50.0%
TGGAAAACGGCCCTTCAAAG+CGG + tig0019874:83580-83599 Msa1377190:intron 50.0%
! TATGCATCTAGCTCCAAGGC+AGG + tig0019874:83940-83959 Msa1377190:CDS 50.0%
! AGGTCGTGAGAAAGTGCGAA+GGG + tig0019874:83960-83979 Msa1377190:CDS 50.0%
!! TCTGTTTTGGGCAGCGTATC+AGG - tig0019874:84113-84132 None:intergenic 50.0%
TACGCTGCCCAAAACAGACA+AGG + tig0019874:84115-84134 Msa1377190:CDS 50.0%
AAGCTGAGAGGCTCAAGGAA+AGG + tig0019874:84186-84205 Msa1377190:CDS 50.0%
AGTATCTACGTTGCGTCACG+TGG + tig0019874:84454-84473 Msa1377190:intron 50.0%
GTGTGCTCAACCATATCTCG+AGG - tig0019874:84710-84729 None:intergenic 50.0%
! CTGGAGTGGATTTGGACTTG+TGG + tig0019874:84802-84821 Msa1377190:intron 50.0%
! TCTAGTTCAGAGATGGACCG+TGG + tig0019874:84833-84852 Msa1377190:intron 50.0%
CTAGTTCAGAGATGGACCGT+GGG + tig0019874:84834-84853 Msa1377190:intron 50.0%
ATATGTTCCGGACTTGGCCA+CGG - tig0019874:84860-84879 None:intergenic 50.0%
TCTTTCTTCTCGGCCTGCAA+AGG - tig0019874:84898-84917 None:intergenic 50.0%
TCCAATGCCATGGCTGCTAA+AGG + tig0019874:85006-85025 Msa1377190:CDS 50.0%
TCCTTTAGCAGCCATGGCAT+TGG - tig0019874:85010-85029 None:intergenic 50.0%
CGACCTCCAGTTGCTTAAAG+TGG + tig0019874:85135-85154 Msa1377190:exon 50.0%
CCAAATGGAGGAACCACCAG+TGG - tig0019874:82763-82782 None:intergenic 55.0%
CCACTGGTGGTTCCTCCATT+TGG + tig0019874:82760-82779 Msa1377190:CDS 55.0%
! CTGCTGCTTCTGCTTTCACC+TGG + tig0019874:82856-82875 Msa1377190:CDS 55.0%
CACTTTCTCACGACCTGCCT+TGG - tig0019874:83956-83975 None:intergenic 55.0%
! CAGGTCGTGAGAAAGTGCGA+AGG + tig0019874:83959-83978 Msa1377190:CDS 55.0%
TGTCGTCATGTGGCACAACG+TGG - tig0019874:84319-84338 None:intergenic 55.0%
! CGGTGTCAAGTGGCACAACA+TGG - tig0019874:84608-84627 None:intergenic 55.0%
AAACCATGATCTGCACGCCG+TGG - tig0019874:84743-84762 None:intergenic 55.0%
! TAGCAGCCATGGCATTGGAG+AGG - tig0019874:85005-85024 None:intergenic 55.0%
AAGCAACTGGAGGTCGAAGC+AGG - tig0019874:85131-85150 None:intergenic 55.0%
! AGACTGAGGCTGAGGCATCC+AGG - tig0019874:82877-82896 None:intergenic 60.0%
GATGCCTCAGCCTCAGTCTC+AGG + tig0019874:82878-82897 Msa1377190:CDS 60.0%
TGAGCCTGAGACTGAGGCTG+AGG - tig0019874:82885-82904 None:intergenic 60.0%
AGCACACATAGGCCTCGCCA+CGG + tig0019874:84723-84742 Msa1377190:intron 60.0%
GGTTAACCAGTTCGCACCCG+TGG + tig0019874:85243-85262 Msa1377190:three_prime_UTR 60.0%
CATGAACCACGGGTGCGAAC+TGG - tig0019874:85252-85271 None:intergenic 60.0%
ATAGGACCTATGCGCCGCGC+AGG - tig0019874:84401-84420 None:intergenic 65.0%
ATGATCTGCACGCCGTGGCG+AGG - tig0019874:84738-84757 None:intergenic 65.0%
TCGCCACGGCGTGCAGATCA+TGG + tig0019874:84737-84756 Msa1377190:intron 65.0%
CTTGCACCTGCGCGGCGCAT+AGG + tig0019874:84392-84411 Msa1377190:intron 70.0%
CAGAGATGGACCGTGGGCCG+TGG + tig0019874:84840-84859 Msa1377190:intron 70.0%
CCGGACTTGGCCACGGCCCA+CGG - tig0019874:84853-84872 None:intergenic 75.0%
CCGTGGGCCGTGGCCAAGTC+CGG + tig0019874:84850-84869 Msa1377190:intron 75.0%
Chromosome Type Strat End Strand Name
tig0019874 gene 82747 85566 82747 ID=Msa1377190;Name=Msa1377190
tig0019874 mRNA 82747 85566 82747 ID=Msa1377190-mRNA-1;Parent=Msa1377190;Name=Msa1377190-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.75|1|1|1|1|5|414|243
tig0019874 exon 82747 82934 82747 ID=Msa1377190-mRNA-1:exon:5518;Parent=Msa1377190-mRNA-1
tig0019874 exon 83197 83253 83197 ID=Msa1377190-mRNA-1:exon:5519;Parent=Msa1377190-mRNA-1
tig0019874 exon 83924 83998 83924 ID=Msa1377190-mRNA-1:exon:5520;Parent=Msa1377190-mRNA-1
tig0019874 exon 84082 84244 84082 ID=Msa1377190-mRNA-1:exon:5521;Parent=Msa1377190-mRNA-1
tig0019874 exon 84904 85566 84904 ID=Msa1377190-mRNA-1:exon:5522;Parent=Msa1377190-mRNA-1
tig0019874 CDS 82747 82934 82747 ID=Msa1377190-mRNA-1:cds;Parent=Msa1377190-mRNA-1
tig0019874 CDS 83197 83253 83197 ID=Msa1377190-mRNA-1:cds;Parent=Msa1377190-mRNA-1
tig0019874 CDS 83924 83998 83924 ID=Msa1377190-mRNA-1:cds;Parent=Msa1377190-mRNA-1
tig0019874 CDS 84082 84244 84082 ID=Msa1377190-mRNA-1:cds;Parent=Msa1377190-mRNA-1
tig0019874 CDS 84904 85152 84904 ID=Msa1377190-mRNA-1:cds;Parent=Msa1377190-mRNA-1
tig0019874 three_prime_UTR 85153 85566 85153 ID=Msa1377190-mRNA-1:three_prime_utr;Parent=Msa1377190-mRNA-1
Gene Sequence

>Msa1377190

ATGGATATGGATTCCACTGGTGGTTCCTCCATTTGGCTCTATGATTATGGCTATGATGATATATCTATTTCTGCTGCTGATTTCATGGCTTCTGACTCTTCTGCTGCTGCTGCTGCTTCTGCTTTCACCTGGATGCCTCAGCCTCAGTCTCAGGCTCATATCATCAACCCTCCTTCCTCTCATATGAGCTTGGAAATGGATTACTCCCTGGATTCAACTGTAATGGAAAGTAACCCTTCAAAGCGGTTAAGGACAGAATCATATGCATCTAGCTCCAAGGCAGGTCGTGAGAAAGTGCGAAGGGATAAATTGAATGACAGGTTTATGGAATTGAGTTCTGTCTTAGAGCCTGATACGCTGCCCAAAACAGACAAGGTTAGCTTATTAAATGATGCGGTTCGAGTGGTGACCCAATTAAGAAATGAAGCTGAGAGGCTCAAGGAAAGGAATGATGAATTGCGCGAAAAAGTTAAAGAACTTAAGGCCGAGAAGAAAGAGCTTCGTGATGAAAAAAATAAGCTGAAGCTAGACAAAGAAAAGTTGGAACAGCAAGTCAAATTAGCAAGTGTCCAGTCTAACTTCCTCTCCAATGCCATGGCTGCTAAAGGACAAACTGCTAACCACAAGCTGATGCCTTTCATTGGTTATCCTGGAATCTCAATGTGGCAGTTTATGTCACCCGCTACAGTTGATACATCACAGGATCACCTGCTTCGACCTCCAGTTGCTTAA

Protein sequence

>Msa1377190

MDMDSTGGSSIWLYDYGYDDISISAADFMASDSSAAAAASAFTWMPQPQSQAHIINPPSSHMSLEMDYSLDSTVMESNPSKRLRTESYASSSKAGREKVRRDKLNDRFMELSSVLEPDTLPKTDKVSLLNDAVRVVTQLRNEAERLKERNDELREKVKELKAEKKELRDEKNKLKLDKEKLEQQVKLASVQSNFLSNAMAAKGQTANHKLMPFIGYPGISMWQFMSPATVDTSQDHLLRPPVA*