AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0622890


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0622890 MtrunA17_Chr2g0323031 89.695 262 6 2 1 243 1 260 4.02e-165 456
Msa0622890 MtrunA17_Chr4g0042041 54.545 242 87 6 12 243 9 237 1.46e-79 239
Msa0622890 MtrunA17_Chr2g0319301 52.675 243 83 7 12 243 9 230 5.19e-75 227
Msa0622890 MtrunA17_Chr1g0167821 48.108 185 93 3 62 243 62 246 1.51e-46 155
Msa0622890 MtrunA17_Chr4g0038511 44.330 97 53 1 91 187 9 104 1.32e-18 82.8
Msa0622890 MtrunA17_Chr1g0161461 44.565 92 50 1 93 184 82 172 1.54e-18 83.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0622890 AT5G54680.1 55.612 196 76 5 59 243 39 234 9.47e-66 204
Msa0622890 AT1G51070.1 55.440 193 78 5 59 243 34 226 1.34e-65 203
Msa0622890 AT1G51070.2 55.155 194 79 5 58 243 99 292 1.78e-64 202
Msa0622890 AT4G14410.2 50.888 169 71 5 81 243 115 277 2.54e-43 148
Msa0622890 AT4G14410.3 50.888 169 71 5 81 243 115 277 2.54e-43 148
Msa0622890 AT4G14410.1 50.888 169 71 5 81 243 121 283 3.12e-43 148
Msa0622890 AT3G23210.2 50.286 175 77 6 76 243 120 291 1.11e-40 141
Msa0622890 AT3G23210.1 50.000 174 79 5 76 243 149 320 1.91e-40 141
Msa0622890 AT3G19860.2 46.809 94 49 1 91 184 61 153 1.12e-17 81.3
Msa0622890 AT3G19860.1 46.809 94 49 1 91 184 8 100 1.30e-17 80.5
Msa0622890 AT3G19860.3 46.809 94 49 1 91 184 39 131 1.69e-17 80.5
Msa0622890 AT4G36060.4 44.792 96 52 1 89 184 27 121 3.98e-17 78.6
Msa0622890 AT4G36060.2 44.792 96 52 1 89 184 27 121 5.00e-17 78.6
Msa0622890 AT4G36060.3 44.792 96 52 1 89 184 45 139 1.02e-16 77.8
Msa0622890 AT4G36060.1 44.792 96 52 1 89 184 45 139 1.16e-16 77.8

Find 76 sgRNAs with CRISPR-Local

Find 161 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACATGATTTAAAAGGTTTA+TGG 0.124834 4_2:-75605609 Msa0622890:intron
TCTCAGCTTCATTTCTTAAT+TGG 0.176160 4_2:+75605504 None:intergenic
TAAGCTAACCTTGTCTGTTT+TGG 0.191189 4_2:+75605553 None:intergenic
TATTTCTGCTGCTGATTTCA+TGG 0.212247 4_2:-75606864 Msa0622890:CDS
TCCATTTGGCTCTATGATTA+TGG 0.214517 4_2:-75606902 Msa0622890:CDS
TCACAATAATATTATGGATA+TGG 0.249624 4_2:-75606942 None:intergenic
CCACTGGTGGTTCCTCCATT+TGG 0.268940 4_2:-75606916 Msa0622890:CDS
CTCAGCTTCATTTCTTAATT+GGG 0.281253 4_2:+75605505 None:intergenic
ATGTTATTTGAACAACAATT+TGG 0.295938 4_2:+75604219 None:intergenic
ACTAACAACTTTGTACAATA+AGG 0.314876 4_2:+75604499 None:intergenic
ATCACGAAGCTCTTTCTTCT+CGG 0.320152 4_2:+75604771 None:intergenic
TTATATTTGCAGCTTGGAAA+TGG 0.339357 4_2:-75606491 Msa0622890:intron
CACTTTCTCACGACCTGCCT+TGG 0.343619 4_2:+75605723 None:intergenic
ATGCCTTTCATTGGTTATCC+TGG 0.370469 4_2:-75604625 Msa0622890:CDS
TGCTAACCACTTTAAGCAAC+TGG 0.372348 4_2:+75604535 None:intergenic
CTGCTGCTTCTGCTTTCACC+TGG 0.376252 4_2:-75606820 Msa0622890:CDS
CACAAGCTGATGCCTTTCAT+TGG 0.397178 4_2:-75604634 Msa0622890:CDS
GGTTCATGAAGTGTTAGATT+TGG 0.398133 4_2:-75604412 Msa0622890:three_prime_UTR
GATGCCTCAGCCTCAGTCTC+AGG 0.418685 4_2:-75606798 Msa0622890:CDS
AAGATATATTACCGCTTTGA+AGG 0.422144 4_2:+75606433 None:intergenic
AACTGCCACATTGAGATTCC+AGG 0.422338 4_2:+75604607 None:intergenic
CATGAACCACGGGTGCGAAC+TGG 0.441058 4_2:+75604427 None:intergenic
CTCCCTGGATTCAACTGTAA+TGG 0.443647 4_2:-75606464 Msa0622890:CDS
CGACCTCCAGTTGCTTAAAG+TGG 0.445912 4_2:-75604541 Msa0622890:exon
TCCTTTAGCAGCCATGGCAT+TGG 0.447269 4_2:+75604669 None:intergenic
TTTCCATTACAGTTGAATCC+AGG 0.459110 4_2:+75606461 None:intergenic
GAAGCTAGACAAAGAAAAGT+TGG 0.461043 4_2:-75604734 Msa0622890:CDS
ACCCTCCTTCCTCTCATATG+AGG 0.478847 4_2:-75606763 Msa0622890:intron
AAGCAACTGGAGGTCGAAGC+AGG 0.492222 4_2:+75604548 None:intergenic
TCCAATGCCATGGCTGCTAA+AGG 0.493863 4_2:-75604670 Msa0622890:CDS
TTCCATTACAGTTGAATCCA+GGG 0.496195 4_2:+75606462 None:intergenic
TGTTCAAATCTACATGTAGT+TGG 0.502227 4_2:-75604291 Msa0622890:three_prime_UTR
GAAGGGATAAATTGAATGAC+AGG 0.502758 4_2:-75605699 Msa0622890:intron
AAATTCGACAACTTCTTACA+TGG 0.505037 4_2:-75604454 Msa0622890:three_prime_UTR
AGTTTGTCCTTTAGCAGCCA+TGG 0.506775 4_2:+75604663 None:intergenic
AGACTGAGGCTGAGGCATCC+AGG 0.513096 4_2:+75606802 None:intergenic
ATTTGAACACTTGAAAATTG+TGG 0.518101 4_2:+75604305 None:intergenic
CATTGGAGAGGAAGTTAGAC+TGG 0.527913 4_2:+75604686 None:intergenic
GCCATAATCATAGAGCCAAA+TGG 0.530360 4_2:+75606901 None:intergenic
CTTGGAAATGGATTACTCCC+TGG 0.534671 4_2:-75606479 Msa0622890:CDS
AGATATATTACCGCTTTGAA+GGG 0.546046 4_2:+75606434 None:intergenic
CGCTACAGTTGATACATCAC+AGG 0.567747 4_2:-75604575 Msa0622890:CDS
ATGGATATGGATTCCACTGG+TGG 0.573000 4_2:-75606929 Msa0622890:CDS
AAGGACAAAGTGAATCACTT+AGG 0.573560 4_2:+75604154 None:intergenic
AACTTTGTACAATAAGGAAG+TGG 0.574450 4_2:+75604505 None:intergenic
TGAGCCTGAGACTGAGGCTG+AGG 0.575513 4_2:+75606794 None:intergenic
AAGCTGAGAGGCTCAAGGAA+AGG 0.587154 4_2:-75605490 Msa0622890:CDS
TATGCATCTAGCTCCAAGGC+AGG 0.594326 4_2:-75605736 Msa0622890:CDS
ATCTAACACTTCATGAACCA+CGG 0.596586 4_2:+75604416 None:intergenic
CAATGAAAGGCATCAGCTTG+TGG 0.597079 4_2:+75604635 None:intergenic
ATGATATGAGCCTGAGACTG+AGG 0.597314 4_2:+75606788 None:intergenic
ACCTCATATGAGAGGAAGGA+GGG 0.598698 4_2:+75606762 None:intergenic
GGTTAGCTTATTAAATGATG+CGG 0.600148 4_2:-75605540 Msa0622890:CDS
AGTCACCTCATATGAGAGGA+AGG 0.600170 4_2:+75606758 None:intergenic
ATTCCAGGATAACCAATGAA+AGG 0.600579 4_2:+75604622 None:intergenic
GGTTAACCAGTTCGCACCCG+TGG 0.600674 4_2:-75604433 Msa0622890:three_prime_UTR
TCTAACACTTCATGAACCAC+GGG 0.603321 4_2:+75604417 None:intergenic
AAATGAAGCTGAGAGGCTCA+AGG 0.603831 4_2:-75605495 Msa0622890:CDS
ATTAAATGATGCGGTTCGAG+TGG 0.605944 4_2:-75605531 Msa0622890:CDS
CCAAATGGAGGAACCACCAG+TGG 0.607270 4_2:+75606916 None:intergenic
TAACTTCCTCTCCAATGCCA+TGG 0.610860 4_2:-75604680 Msa0622890:CDS
ATTATGGATATGGATTCCAC+TGG 0.611334 4_2:-75606932 Msa0622890:CDS
ATCATATGCATCTAGCTCCA+AGG 0.614949 4_2:-75605740 Msa0622890:CDS
TCAAAGTCACCTCATATGAG+AGG 0.629158 4_2:+75606754 None:intergenic
TAGCAGCCATGGCATTGGAG+AGG 0.631338 4_2:+75604674 None:intergenic
TGTGATGTATCAACTGTAGC+GGG 0.634621 4_2:+75604577 None:intergenic
AGGTCGTGAGAAAGTGCGAA+GGG 0.647351 4_2:-75605716 Msa0622890:CDS
CAGGTCGTGAGAAAGTGCGA+AGG 0.654075 4_2:-75605717 Msa0622890:CDS
TAACCACTTTAAGCAACTGG+AGG 0.675285 4_2:+75604538 None:intergenic
ATAATCATAGAGCCAAATGG+AGG 0.683773 4_2:+75606904 None:intergenic
CACCTCATATGAGAGGAAGG+AGG 0.683814 4_2:+75606761 None:intergenic
TACGCTGCCCAAAACAGACA+AGG 0.685974 4_2:-75605561 Msa0622890:CDS
CTGTGATGTATCAACTGTAG+CGG 0.693038 4_2:+75604576 None:intergenic
AATTAAGAAATGAAGCTGAG+AGG 0.714845 4_2:-75605502 Msa0622890:CDS
GTTATCCTGGAATCTCAATG+TGG 0.748590 4_2:-75604612 Msa0622890:CDS
TGGAAAGTAACCCTTCAAAG+CGG 0.753113 4_2:-75606444 Msa0622890:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTGTAAAAGATATTATATA+CGG - chr4_2:75605006-75605025 Msa0622890:intron 10.0%
!! TTTATATAAAAGATAGATAA+AGG + chr4_2:75606016-75606035 None:intergenic 10.0%
!!! AATTTTAAAAACAAACAATA+AGG + chr4_2:75606929-75606948 None:intergenic 10.0%
!!! GTATATAATATCTTTTACAA+AGG + chr4_2:75605007-75605026 None:intergenic 15.0%
!!! TTTTTCTTATCTTATTATAG+TGG - chr4_2:75605634-75605653 Msa0622890:intron 15.0%
!! AAAATAAATAACTAGTTGAT+GGG + chr4_2:75605944-75605963 None:intergenic 15.0%
!! TAAAATAAATAACTAGTTGA+TGG + chr4_2:75605945-75605964 None:intergenic 15.0%
!!! GATTTTGAATGAATTGATTT+TGG - chr4_2:75604394-75604413 Msa0622890:three_prime_UTR 20.0%
!! TAAGTTAGACAATAAATTTG+AGG - chr4_2:75604455-75604474 Msa0622890:three_prime_UTR 20.0%
!! TAAAAGATATTATATACGGT+TGG - chr4_2:75605010-75605029 Msa0622890:intron 20.0%
!! TTTCAATGACATGATTTAAA+AGG - chr4_2:75605445-75605464 Msa0622890:intron 20.0%
!! AAGTAAACTTACTTATATGA+GGG + chr4_2:75605760-75605779 None:intergenic 20.0%
!! ATATAAAAGATAGATAAAGG+CGG + chr4_2:75606013-75606032 None:intergenic 20.0%
!! TAGTAAACTAACTAATATGA+GGG + chr4_2:75606049-75606068 None:intergenic 20.0%
!! ATAGTAAACTAACTAATATG+AGG + chr4_2:75606050-75606069 None:intergenic 20.0%
!!! ATGTTATTTGAACAACAATT+TGG + chr4_2:75606845-75606864 None:intergenic 20.0%
! AAAATCAATTGTAGAAACTG+CGG - chr4_2:75604481-75604500 Msa0622890:three_prime_UTR 25.0%
! AATACTTTATATTTGCAGCT+TGG - chr4_2:75604564-75604583 Msa0622890:CDS 25.0%
! AATGTTGAACGATAAATTTG+AGG - chr4_2:75604725-75604744 Msa0622890:CDS 25.0%
!! CTTCGAGTTAGAATTAATTA+TGG - chr4_2:75604787-75604806 Msa0622890:intron 25.0%
! ATTACTTTATATTAGCAGCA+TGG - chr4_2:75604912-75604931 Msa0622890:intron 25.0%
! AAAACAACAATGAATAGAGA+GGG + chr4_2:75605253-75605272 None:intergenic 25.0%
! TAATATGCAACTGTAACTTT+AGG - chr4_2:75605287-75605306 Msa0622890:intron 25.0%
! GACATGATTTAAAAGGTTTA+TGG - chr4_2:75605452-75605471 Msa0622890:intron 25.0%
! CGAAAAAGTTAAAGAACTTA+AGG - chr4_2:75605608-75605627 Msa0622890:intron 25.0%
! AGTAAACTTACTTATATGAG+GGG + chr4_2:75605759-75605778 None:intergenic 25.0%
! CAAGTAAACTTACTTATATG+AGG + chr4_2:75605761-75605780 None:intergenic 25.0%
! TAAGATGATAACTAGTAGAT+AGG + chr4_2:75605804-75605823 None:intergenic 25.0%
! TACAAGTAGACTAAATTAAG+AGG + chr4_2:75605903-75605922 None:intergenic 25.0%
!!! CATAACTTTAGAATATGTTC+CGG + chr4_2:75606257-75606276 None:intergenic 25.0%
! ACTAACAACTTTGTACAATA+AGG + chr4_2:75606565-75606584 None:intergenic 25.0%
! ATTTGAACACTTGAAAATTG+TGG + chr4_2:75606759-75606778 None:intergenic 25.0%
AAATCAATTGTAGAAACTGC+GGG - chr4_2:75604482-75604501 Msa0622890:three_prime_UTR 30.0%
TTATATTTGCAGCTTGGAAA+TGG - chr4_2:75604570-75604589 Msa0622890:CDS 30.0%
! AGATATATTACCGCTTTGAA+GGG + chr4_2:75604630-75604649 None:intergenic 30.0%
AAGATATATTACCGCTTTGA+AGG + chr4_2:75604631-75604650 None:intergenic 30.0%
CGAGTTAGAATTAATTATGG+TGG - chr4_2:75604790-75604809 Msa0622890:intron 30.0%
AACACTTCTTGAATCAAGTT+TGG - chr4_2:75604826-75604845 Msa0622890:intron 30.0%
TTATATTAGCAGCATGGAAA+TGG - chr4_2:75604918-75604937 Msa0622890:intron 30.0%
! AGATATATTACCGCTTTGAA+GGG + chr4_2:75604630-75604649 None:intergenic 30.0%
AAGATATATTACCGCTTTGA+AGG + chr4_2:75604631-75604650 None:intergenic 30.0%
AGAAAGATGACCTATATACT+CGG - chr4_2:75605094-75605113 Msa0622890:intron 30.0%
TCTTTAAACACCGAGTATAT+AGG + chr4_2:75605107-75605126 None:intergenic 30.0%
GAAAACAACAATGAATAGAG+AGG + chr4_2:75605254-75605273 None:intergenic 30.0%
!! GGTTAGCTTATTAAATGATG+CGG - chr4_2:75605521-75605540 Msa0622890:CDS 30.0%
CTCAGCTTCATTTCTTAATT+GGG + chr4_2:75605559-75605578 None:intergenic 30.0%
TCTCAGCTTCATTTCTTAAT+TGG + chr4_2:75605560-75605579 None:intergenic 30.0%
AATTAAGAAATGAAGCTGAG+AGG - chr4_2:75605559-75605578 Msa0622890:CDS 30.0%
!! TATTTTAGAAGCTCTGCATA+TGG + chr4_2:75606165-75606184 None:intergenic 30.0%
TAAAGTTATGTTTCCTTTGC+AGG - chr4_2:75606267-75606286 Msa0622890:intron 30.0%
AACTTTGTACAATAAGGAAG+TGG + chr4_2:75606559-75606578 None:intergenic 30.0%
AAATTCGACAACTTCTTACA+TGG - chr4_2:75606607-75606626 Msa0622890:intron 30.0%
TGTTCAAATCTACATGTAGT+TGG - chr4_2:75606770-75606789 Msa0622890:CDS 30.0%
ATAATCATAGAGCCAAATGG+AGG + chr4_2:75604160-75604179 None:intergenic 35.0%
!! TCCATTTGGCTCTATGATTA+TGG - chr4_2:75604159-75604178 Msa0622890:three_prime_UTR 35.0%
!! TATTTCTGCTGCTGATTTCA+TGG - chr4_2:75604197-75604216 Msa0622890:three_prime_UTR 35.0%
TCAAACACGCGCAAATTTAA+GGG + chr4_2:75604365-75604384 None:intergenic 35.0%
ATCAAACACGCGCAAATTTA+AGG + chr4_2:75604366-75604385 None:intergenic 35.0%
TTCCATTACAGTTGAATCCA+GGG + chr4_2:75604602-75604621 None:intergenic 35.0%
TTTCCATTACAGTTGAATCC+AGG + chr4_2:75604603-75604622 None:intergenic 35.0%
TGAATCAAGTTTGGTTACTC+CGG - chr4_2:75604835-75604854 Msa0622890:intron 35.0%
TCGATCACAAAGTGTATGTT+TGG + chr4_2:75604869-75604888 None:intergenic 35.0%
! GATTCAACAGTACTGGAAAA+CGG - chr4_2:75604952-75604971 Msa0622890:intron 35.0%
TGTAACGAAGACAGAGTAAA+AGG + chr4_2:75605227-75605246 None:intergenic 35.0%
! GCAACTGTAACTTTAGGTTA+AGG - chr4_2:75605293-75605312 Msa0622890:intron 35.0%
GAAGGGATAAATTGAATGAC+AGG - chr4_2:75605362-75605381 Msa0622890:intron 35.0%
! AAGCTAACCTTGTCTGTTTT+GGG + chr4_2:75605510-75605529 None:intergenic 35.0%
! TAAGCTAACCTTGTCTGTTT+TGG + chr4_2:75605511-75605530 None:intergenic 35.0%
TAGATAAAGATGTCGTCATG+TGG + chr4_2:75605714-75605733 None:intergenic 35.0%
!! AAAATACTCTGGAGTGGATT+TGG - chr4_2:75606179-75606198 Msa0622890:intron 35.0%
! TTTAGAATATGTTCCGGACT+TGG + chr4_2:75606251-75606270 None:intergenic 35.0%
GAAGCTAGACAAAGAAAAGT+TGG - chr4_2:75606327-75606346 Msa0622890:intron 35.0%
ATTCCAGGATAACCAATGAA+AGG + chr4_2:75606442-75606461 None:intergenic 35.0%
ATCTAACACTTCATGAACCA+CGG + chr4_2:75606648-75606667 None:intergenic 35.0%
! GGTTCATGAAGTGTTAGATT+TGG - chr4_2:75606649-75606668 Msa0622890:intron 35.0%
AAGGACAAAGTGAATCACTT+AGG + chr4_2:75606910-75606929 None:intergenic 35.0%
GCCATAATCATAGAGCCAAA+TGG + chr4_2:75604163-75604182 None:intergenic 40.0%
TCAAAGTCACCTCATATGAG+AGG + chr4_2:75604310-75604329 None:intergenic 40.0%
TGGAAAGTAACCCTTCAAAG+CGG - chr4_2:75604617-75604636 Msa0622890:CDS 40.0%
! TGTATGTTTGGTTCCACTTC+CGG + chr4_2:75604857-75604876 None:intergenic 40.0%
CATGGAAATGGAATACTCAC+TGG - chr4_2:75604930-75604949 Msa0622890:intron 40.0%
! GAGTAAAAGGCGCAAATTGA+AGG + chr4_2:75605214-75605233 None:intergenic 40.0%
! ATCATATGCATCTAGCTCCA+AGG - chr4_2:75605321-75605340 Msa0622890:intron 40.0%
ATTAAATGATGCGGTTCGAG+TGG - chr4_2:75605530-75605549 Msa0622890:CDS 40.0%
ACTTGTAAATGTGCTGAGCA+CGG - chr4_2:75605916-75605935 Msa0622890:intron 40.0%
AGATATGGTTGAGCACACAT+AGG - chr4_2:75606097-75606116 Msa0622890:intron 40.0%
!! GCAGAGCTTCTAAAATACTC+TGG - chr4_2:75606168-75606187 Msa0622890:intron 40.0%
!! GCTTCTAAAATACTCTGGAG+TGG - chr4_2:75606173-75606192 Msa0622890:intron 40.0%
GATTTGGACTTGTGGAACAA+AGG - chr4_2:75606195-75606214 Msa0622890:intron 40.0%
! ACAAAGGTCTAGTTCAGAGA+TGG - chr4_2:75606211-75606230 Msa0622890:intron 40.0%
ATCACGAAGCTCTTTCTTCT+CGG + chr4_2:75606293-75606312 None:intergenic 40.0%
! ATGCCTTTCATTGGTTATCC+TGG - chr4_2:75606436-75606455 Msa0622890:intron 40.0%
GTTATCCTGGAATCTCAATG+TGG - chr4_2:75606449-75606468 Msa0622890:CDS 40.0%
TGTGATGTATCAACTGTAGC+GGG + chr4_2:75606487-75606506 None:intergenic 40.0%
CTGTGATGTATCAACTGTAG+CGG + chr4_2:75606488-75606507 None:intergenic 40.0%
TAACCACTTTAAGCAACTGG+AGG + chr4_2:75606526-75606545 None:intergenic 40.0%
TGCTAACCACTTTAAGCAAC+TGG + chr4_2:75606529-75606548 None:intergenic 40.0%
TCTAACACTTCATGAACCAC+GGG + chr4_2:75606647-75606666 None:intergenic 40.0%
ATGGATATGGATTCCACTGG+TGG - chr4_2:75604132-75604151 Msa0622890:three_prime_UTR 45.0%
ATGATATGAGCCTGAGACTG+AGG + chr4_2:75604276-75604295 None:intergenic 45.0%
ACCTCATATGAGAGGAAGGA+GGG + chr4_2:75604302-75604321 None:intergenic 45.0%
AGTCACCTCATATGAGAGGA+AGG + chr4_2:75604306-75604325 None:intergenic 45.0%
!! CTTGGAAATGGATTACTCCC+TGG - chr4_2:75604582-75604601 Msa0622890:CDS 45.0%
CTCCCTGGATTCAACTGTAA+TGG - chr4_2:75604597-75604616 Msa0622890:CDS 45.0%
AAGTTTGGTTACTCCGGAAG+TGG - chr4_2:75604841-75604860 Msa0622890:intron 45.0%
CTCACTGGATTCAACAGTAC+TGG - chr4_2:75604945-75604964 Msa0622890:intron 45.0%
AAATGAAGCTGAGAGGCTCA+AGG - chr4_2:75605566-75605585 Msa0622890:CDS 45.0%
TAAGTTTACTTGCACCTGCG+CGG - chr4_2:75605769-75605788 Msa0622890:intron 45.0%
CTTGTAAATGTGCTGAGCAC+GGG - chr4_2:75605917-75605936 Msa0622890:intron 45.0%
! TAGATAAAGGCGGTGTCAAG+TGG + chr4_2:75606003-75606022 None:intergenic 45.0%
CCATATCTCGAGGTTCTCAT+TGG + chr4_2:75606085-75606104 None:intergenic 45.0%
CCAATGAGAACCTCGAGATA+TGG - chr4_2:75606082-75606101 Msa0622890:intron 45.0%
CATTGGAGAGGAAGTTAGAC+TGG + chr4_2:75606378-75606397 None:intergenic 45.0%
TAACTTCCTCTCCAATGCCA+TGG - chr4_2:75606381-75606400 Msa0622890:intron 45.0%
AGTTTGTCCTTTAGCAGCCA+TGG + chr4_2:75606401-75606420 None:intergenic 45.0%
!! CAATGAAAGGCATCAGCTTG+TGG + chr4_2:75606429-75606448 None:intergenic 45.0%
CACAAGCTGATGCCTTTCAT+TGG - chr4_2:75606427-75606446 Msa0622890:intron 45.0%
AACTGCCACATTGAGATTCC+AGG + chr4_2:75606457-75606476 None:intergenic 45.0%
! CGCTACAGTTGATACATCAC+AGG - chr4_2:75606486-75606505 Msa0622890:intron 45.0%
!!! TATTTTATTTTTATAAAACA+CGG - chr4_2:75605958-75605977 Msa0622890:intron 5.0%
ACCCTCCTTCCTCTCATATG+AGG - chr4_2:75604298-75604317 Msa0622890:three_prime_UTR 50.0%
CACCTCATATGAGAGGAAGG+AGG + chr4_2:75604303-75604322 None:intergenic 50.0%
TGGAAAACGGCCCTTCAAAG+CGG - chr4_2:75604965-75604984 Msa0622890:intron 50.0%
! TATGCATCTAGCTCCAAGGC+AGG - chr4_2:75605325-75605344 Msa0622890:intron 50.0%
! AGGTCGTGAGAAAGTGCGAA+GGG - chr4_2:75605345-75605364 Msa0622890:intron 50.0%
!! TCTGTTTTGGGCAGCGTATC+AGG + chr4_2:75605498-75605517 None:intergenic 50.0%
TACGCTGCCCAAAACAGACA+AGG - chr4_2:75605500-75605519 Msa0622890:CDS 50.0%
AAGCTGAGAGGCTCAAGGAA+AGG - chr4_2:75605571-75605590 Msa0622890:CDS 50.0%
AGTATCTACGTTGCGTCACG+TGG - chr4_2:75605839-75605858 Msa0622890:intron 50.0%
GTGTGCTCAACCATATCTCG+AGG + chr4_2:75606095-75606114 None:intergenic 50.0%
! CTGGAGTGGATTTGGACTTG+TGG - chr4_2:75606187-75606206 Msa0622890:intron 50.0%
! TCTAGTTCAGAGATGGACCG+TGG - chr4_2:75606218-75606237 Msa0622890:intron 50.0%
CTAGTTCAGAGATGGACCGT+GGG - chr4_2:75606219-75606238 Msa0622890:intron 50.0%
ATATGTTCCGGACTTGGCCA+CGG + chr4_2:75606245-75606264 None:intergenic 50.0%
TCTTTCTTCTCGGCCTGCAA+AGG + chr4_2:75606283-75606302 None:intergenic 50.0%
TCCAATGCCATGGCTGCTAA+AGG - chr4_2:75606391-75606410 Msa0622890:intron 50.0%
TCCTTTAGCAGCCATGGCAT+TGG + chr4_2:75606395-75606414 None:intergenic 50.0%
CGACCTCCAGTTGCTTAAAG+TGG - chr4_2:75606520-75606539 Msa0622890:intron 50.0%
CCAAATGGAGGAACCACCAG+TGG + chr4_2:75604148-75604167 None:intergenic 55.0%
CCACTGGTGGTTCCTCCATT+TGG - chr4_2:75604145-75604164 Msa0622890:three_prime_UTR 55.0%
! CTGCTGCTTCTGCTTTCACC+TGG - chr4_2:75604241-75604260 Msa0622890:three_prime_UTR 55.0%
CACTTTCTCACGACCTGCCT+TGG + chr4_2:75605341-75605360 None:intergenic 55.0%
! CAGGTCGTGAGAAAGTGCGA+AGG - chr4_2:75605344-75605363 Msa0622890:intron 55.0%
TGTCGTCATGTGGCACAACG+TGG + chr4_2:75605704-75605723 None:intergenic 55.0%
! CGGTGTCAAGTGGCACAACA+TGG + chr4_2:75605993-75606012 None:intergenic 55.0%
AAACCATGATCTGCACGCCG+TGG + chr4_2:75606128-75606147 None:intergenic 55.0%
! TAGCAGCCATGGCATTGGAG+AGG + chr4_2:75606390-75606409 None:intergenic 55.0%
AAGCAACTGGAGGTCGAAGC+AGG + chr4_2:75606516-75606535 None:intergenic 55.0%
! AGACTGAGGCTGAGGCATCC+AGG + chr4_2:75604262-75604281 None:intergenic 60.0%
GATGCCTCAGCCTCAGTCTC+AGG - chr4_2:75604263-75604282 Msa0622890:three_prime_UTR 60.0%
TGAGCCTGAGACTGAGGCTG+AGG + chr4_2:75604270-75604289 None:intergenic 60.0%
AGCACACATAGGCCTCGCCA+CGG - chr4_2:75606108-75606127 Msa0622890:intron 60.0%
GGTTAACCAGTTCGCACCCG+TGG - chr4_2:75606628-75606647 Msa0622890:intron 60.0%
CATGAACCACGGGTGCGAAC+TGG + chr4_2:75606637-75606656 None:intergenic 60.0%
ATAGGACCTATGCGCCGCGC+AGG + chr4_2:75605786-75605805 None:intergenic 65.0%
ATGATCTGCACGCCGTGGCG+AGG + chr4_2:75606123-75606142 None:intergenic 65.0%
TCGCCACGGCGTGCAGATCA+TGG - chr4_2:75606122-75606141 Msa0622890:intron 65.0%
CTTGCACCTGCGCGGCGCAT+AGG - chr4_2:75605777-75605796 Msa0622890:intron 70.0%
CAGAGATGGACCGTGGGCCG+TGG - chr4_2:75606225-75606244 Msa0622890:intron 70.0%
CCGGACTTGGCCACGGCCCA+CGG + chr4_2:75606238-75606257 None:intergenic 75.0%
CCGTGGGCCGTGGCCAAGTC+CGG - chr4_2:75606235-75606254 Msa0622890:intron 75.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 75604132 75606951 75604132 ID=Msa0622890;Name=Msa0622890
chr4_2 mRNA 75604132 75606951 75604132 ID=Msa0622890-mRNA-1;Parent=Msa0622890;Name=Msa0622890-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.75|1|1|1|1|5|414|243
chr4_2 exon 75604132 75604794 75604132 ID=Msa0622890-mRNA-1:exon:22982;Parent=Msa0622890-mRNA-1
chr4_2 exon 75605454 75605616 75605454 ID=Msa0622890-mRNA-1:exon:22981;Parent=Msa0622890-mRNA-1
chr4_2 exon 75605700 75605774 75605700 ID=Msa0622890-mRNA-1:exon:22980;Parent=Msa0622890-mRNA-1
chr4_2 exon 75606445 75606501 75606445 ID=Msa0622890-mRNA-1:exon:22979;Parent=Msa0622890-mRNA-1
chr4_2 exon 75606764 75606951 75606764 ID=Msa0622890-mRNA-1:exon:22978;Parent=Msa0622890-mRNA-1
chr4_2 CDS 75606764 75606951 75606764 ID=Msa0622890-mRNA-1:cds;Parent=Msa0622890-mRNA-1
chr4_2 CDS 75606445 75606501 75606445 ID=Msa0622890-mRNA-1:cds;Parent=Msa0622890-mRNA-1
chr4_2 CDS 75605700 75605774 75605700 ID=Msa0622890-mRNA-1:cds;Parent=Msa0622890-mRNA-1
chr4_2 CDS 75605454 75605616 75605454 ID=Msa0622890-mRNA-1:cds;Parent=Msa0622890-mRNA-1
chr4_2 CDS 75604546 75604794 75604546 ID=Msa0622890-mRNA-1:cds;Parent=Msa0622890-mRNA-1
chr4_2 three_prime_UTR 75604132 75604545 75604132 ID=Msa0622890-mRNA-1:three_prime_utr;Parent=Msa0622890-mRNA-1
Gene Sequence

>Msa0622890

ATGGATATGGATTCCACTGGTGGTTCCTCCATTTGGCTCTATGATTATGGCTATGATGATATATCTATTTCTGCTGCTGATTTCATGGCTTCTGACTCTTCTGCTGCTGCTGCTGCTTCTGCTTTCACCTGGATGCCTCAGCCTCAGTCTCAGGCTCATATCATCAACCCTCCTTCCTCTCATATGAGCTTGGAAATGGATTACTCCCTGGATTCAACTGTAATGGAAAGTAACCCTTCAAAGCGGTTAAGGACAGAATCATATGCATCTAGCTCCAAGGCAGGTCGTGAGAAAGTGCGAAGGGATAAATTGAATGACAGGTTTATGGAATTGAGTTCTGTCTTAGAGCCTGATACGCTGCCCAAAACAGACAAGGTTAGCTTATTAAATGATGCGGTTCGAGTGGTGACCCAATTAAGAAATGAAGCTGAGAGGCTCAAGGAAAGGAATGATGAATTGCGCGAAAAAGTTAAAGAACTTAAGGCCGAGAAGAAAGAGCTTCGTGATGAAAAAAATAAGCTGAAGCTAGACAAAGAAAAGTTGGAACAGCAAGTCAAATTAGCAAGTGTCCAGTCTAACTTCCTCTCCAATGCCATGGCTGCTAAAGGACAAACTGCTAACCACAAGCTGATGCCTTTCATTGGTTATCCTGGAATCTCAATGTGGCAGTTTATGTCACCCGCTACAGTTGATACATCACAGGATCACCTGCTTCGACCTCCAGTTGCTTAA

Protein sequence

>Msa0622890

MDMDSTGGSSIWLYDYGYDDISISAADFMASDSSAAAAASAFTWMPQPQSQAHIINPPSSHMSLEMDYSLDSTVMESNPSKRLRTESYASSSKAGREKVRRDKLNDRFMELSSVLEPDTLPKTDKVSLLNDAVRVVTQLRNEAERLKERNDELREKVKELKAEKKELRDEKNKLKLDKEKLEQQVKLASVQSNFLSNAMAAKGQTANHKLMPFIGYPGISMWQFMSPATVDTSQDHLLRPPVA*