Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0868820 | XP_003618162.1 | 98.174 | 219 | 4 | 0 | 1 | 219 | 1 | 219 | 5.19e-153 | 433 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0868820 | sp|Q6K5Q0|GL21_ORYSJ | 66.972 | 218 | 67 | 3 | 1 | 215 | 1 | 216 | 9.09e-93 | 273 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0868820 | G7KQ15 | 98.174 | 219 | 4 | 0 | 1 | 219 | 1 | 219 | 2.48e-153 | 433 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0014590 | Msa0868820 | 0.800674 | 1.290378e-48 | -8.615850e-47 |
| Msa0027860 | Msa0868820 | 0.818544 | 1.855066e-52 | -8.615850e-47 |
| Msa0048950 | Msa0868820 | 0.801787 | 7.637627e-49 | -8.615850e-47 |
| Msa0059880 | Msa0868820 | 0.842771 | 2.109438e-58 | -8.615850e-47 |
| Msa0064990 | Msa0868820 | 0.808738 | 2.672018e-50 | -8.615850e-47 |
| Msa0072940 | Msa0868820 | 0.819445 | 1.156998e-52 | -8.615850e-47 |
| Msa0605400 | Msa0868820 | 0.801304 | 9.589866e-49 | -8.615850e-47 |
| Msa0629040 | Msa0868820 | 0.804251 | 2.362574e-49 | -8.615850e-47 |
| Msa0630130 | Msa0868820 | 0.842530 | 2.444162e-58 | -8.615850e-47 |
| Msa0634290 | Msa0868820 | 0.853496 | 2.299633e-61 | -8.615850e-47 |
| Msa0639400 | Msa0868820 | 0.811997 | 5.289815e-51 | -8.615850e-47 |
| Msa0639410 | Msa0868820 | 0.821083 | 4.874034e-53 | -8.615850e-47 |
| Msa0646210 | Msa0868820 | 0.839790 | 1.283510e-57 | -8.615850e-47 |
| Msa0651820 | Msa0868820 | 0.803064 | 4.166320e-49 | -8.615850e-47 |
| Msa0668210 | Msa0868820 | 0.841053 | 5.999233e-58 | -8.615850e-47 |
| Msa0668220 | Msa0868820 | 0.845101 | 5.010399e-59 | -8.615850e-47 |
| Msa0668230 | Msa0868820 | 0.836389 | 9.630746e-57 | -8.615850e-47 |
| Msa0670360 | Msa0868820 | 0.809645 | 1.707681e-50 | -8.615850e-47 |
| Msa0671490 | Msa0868820 | 0.817014 | 4.107276e-52 | -8.615850e-47 |
| Msa0671640 | Msa0868820 | 0.818108 | 2.328198e-52 | -8.615850e-47 |
| Msa0678620 | Msa0868820 | 0.821249 | 4.462911e-53 | -8.615850e-47 |
| Msa0682410 | Msa0868820 | 0.819058 | 1.417846e-52 | -8.615850e-47 |
| Msa0682420 | Msa0868820 | 0.812183 | 4.819371e-51 | -8.615850e-47 |
| Msa0711230 | Msa0868820 | 0.801087 | 1.062479e-48 | -8.615850e-47 |
| Msa0711240 | Msa0868820 | 0.821195 | 4.594710e-53 | -8.615850e-47 |
| Msa0727480 | Msa0868820 | 0.827790 | 1.287870e-54 | -8.615850e-47 |
| Msa0728520 | Msa0868820 | 0.820965 | 5.189173e-53 | -8.615850e-47 |
| Msa0738570 | Msa0868820 | 0.813927 | 1.997629e-51 | -8.615850e-47 |
| Msa0751960 | Msa0868820 | 0.823511 | 1.331813e-53 | -8.615850e-47 |
| Msa0753410 | Msa0868820 | 0.805519 | 1.283821e-49 | -8.615850e-47 |
| Msa0754530 | Msa0868820 | 0.800357 | 1.496743e-48 | -8.615850e-47 |
| Msa0768670 | Msa0868820 | 0.822085 | 2.859903e-53 | -8.615850e-47 |
| Msa0768720 | Msa0868820 | 0.838863 | 2.233687e-57 | -8.615850e-47 |
| Msa0776540 | Msa0868820 | 0.821657 | 3.593545e-53 | -8.615850e-47 |
| Msa0777070 | Msa0868820 | 0.822524 | 2.262223e-53 | -8.615850e-47 |
| Msa0783580 | Msa0868820 | 0.808727 | 2.686745e-50 | -8.615850e-47 |
| Msa0787860 | Msa0868820 | 0.848230 | 6.999131e-60 | -8.615850e-47 |
| Msa0792330 | Msa0868820 | 0.827352 | 1.640708e-54 | -8.615850e-47 |
| Msa0795330 | Msa0868820 | 0.808929 | 2.432438e-50 | -8.615850e-47 |
| Msa0806930 | Msa0868820 | 0.802604 | 5.185218e-49 | -8.615850e-47 |
| Msa0814160 | Msa0868820 | 0.811103 | 8.278027e-51 | -8.615850e-47 |
| Msa0816140 | Msa0868820 | 0.821227 | 4.516972e-53 | -8.615850e-47 |
| Msa0819110 | Msa0868820 | 0.800040 | 1.736331e-48 | -8.615850e-47 |
| Msa0824850 | Msa0868820 | 0.827676 | 1.371710e-54 | -8.615850e-47 |
| Msa0824860 | Msa0868820 | 0.802675 | 5.013991e-49 | -8.615850e-47 |
| Msa0833230 | Msa0868820 | 0.803121 | 4.055457e-49 | -8.615850e-47 |
| Msa0139460 | Msa0868820 | 0.801677 | 8.043297e-49 | -8.615850e-47 |
| Msa0140270 | Msa0868820 | 0.816114 | 6.534948e-52 | -8.615850e-47 |
| Msa0150910 | Msa0868820 | 0.833073 | 6.574822e-56 | -8.615850e-47 |
| Msa0155850 | Msa0868820 | 0.834267 | 3.308625e-56 | -8.615850e-47 |
| Msa0168010 | Msa0868820 | 0.801851 | 7.410023e-49 | -8.615850e-47 |
| Msa0190670 | Msa0868820 | 0.832687 | 8.200343e-56 | -8.615850e-47 |
| Msa0195190 | Msa0868820 | 0.809832 | 1.557407e-50 | -8.615850e-47 |
| Msa0199860 | Msa0868820 | 0.809301 | 2.025140e-50 | -8.615850e-47 |
| Msa0202060 | Msa0868820 | 0.816473 | 5.432372e-52 | -8.615850e-47 |
| Msa0207640 | Msa0868820 | 0.808122 | 3.616614e-50 | -8.615850e-47 |
| Msa0207930 | Msa0868820 | 0.811495 | 6.803569e-51 | -8.615850e-47 |
| Msa0212550 | Msa0868820 | 0.811578 | 6.528436e-51 | -8.615850e-47 |
| Msa0225910 | Msa0868820 | 0.822274 | 2.585885e-53 | -8.615850e-47 |
| Msa0398690 | Msa0868820 | 0.814135 | 1.797423e-51 | -8.615850e-47 |
| Msa0414480 | Msa0868820 | 0.821880 | 3.190830e-53 | -8.615850e-47 |
| Msa0418150 | Msa0868820 | 0.813978 | 1.946446e-51 | -8.615850e-47 |
| Msa0420890 | Msa0868820 | 0.813792 | 2.139048e-51 | -8.615850e-47 |
| Msa0430460 | Msa0868820 | 0.806854 | 6.718720e-50 | -8.615850e-47 |
| Msa0464300 | Msa0868820 | 0.831319 | 1.785419e-55 | -8.615850e-47 |
| Msa0464310 | Msa0868820 | 0.805825 | 1.107392e-49 | -8.615850e-47 |
| Msa0469450 | Msa0868820 | 0.802907 | 4.488589e-49 | -8.615850e-47 |
| Msa0480400 | Msa0868820 | 0.813358 | 2.664980e-51 | -8.615850e-47 |
| Msa0240580 | Msa0868820 | 0.800949 | 1.133515e-48 | -8.615850e-47 |
| Msa0242390 | Msa0868820 | 0.800762 | 1.238084e-48 | -8.615850e-47 |
| Msa0259110 | Msa0868820 | 0.809430 | 1.899420e-50 | -8.615850e-47 |
| Msa0266640 | Msa0868820 | 0.849909 | 2.389335e-60 | -8.615850e-47 |
| Msa0266650 | Msa0868820 | 0.821037 | 4.994260e-53 | -8.615850e-47 |
| Msa0272210 | Msa0868820 | 0.801039 | 1.086399e-48 | -8.615850e-47 |
| Msa0274260 | Msa0868820 | 0.837843 | 4.090961e-57 | -8.615850e-47 |
| Msa0275570 | Msa0868820 | 0.800523 | 1.384648e-48 | -8.615850e-47 |
| Msa0278460 | Msa0868820 | 0.831506 | 1.606374e-55 | -8.615850e-47 |
| Msa0278950 | Msa0868820 | 0.831422 | 1.684839e-55 | -8.615850e-47 |
| Msa0283440 | Msa0868820 | 0.801708 | 7.924552e-49 | -8.615850e-47 |
| Msa0316600 | Msa0868820 | 0.804029 | 2.627717e-49 | -8.615850e-47 |
| Msa0318370 | Msa0868820 | 0.819556 | 1.091381e-52 | -8.615850e-47 |
| Msa0328090 | Msa0868820 | 0.818331 | 2.072293e-52 | -8.615850e-47 |
| Msa0342130 | Msa0868820 | 0.814027 | 1.898306e-51 | -8.615850e-47 |
| Msa0343720 | Msa0868820 | 0.808312 | 3.295548e-50 | -8.615850e-47 |
| Msa0349910 | Msa0868820 | 0.819288 | 1.256742e-52 | -8.615850e-47 |
| Msa0533510 | Msa0868820 | 0.847320 | 1.246357e-59 | -8.615850e-47 |
| Msa0533520 | Msa0868820 | 0.819843 | 9.385438e-53 | -8.615850e-47 |
| Msa0535570 | Msa0868820 | 0.809566 | 1.775769e-50 | -8.615850e-47 |
| Msa0538440 | Msa0868820 | 0.867721 | 1.111013e-65 | -8.615850e-47 |
| Msa0538450 | Msa0868820 | 0.879347 | 1.342374e-69 | -8.615850e-47 |
| Msa0538520 | Msa0868820 | 0.875127 | 3.936473e-68 | -8.615850e-47 |
| Msa0538530 | Msa0868820 | 0.855615 | 5.600216e-62 | -8.615850e-47 |
| Msa0546760 | Msa0868820 | 0.803528 | 3.339658e-49 | -8.615850e-47 |
| Msa0549930 | Msa0868820 | 0.804025 | 2.633523e-49 | -8.615850e-47 |
| Msa0554660 | Msa0868820 | 0.807543 | 4.802763e-50 | -8.615850e-47 |
| Msa0579530 | Msa0868820 | 0.817639 | 2.970994e-52 | -8.615850e-47 |
| Msa0589720 | Msa0868820 | 0.824015 | 1.014959e-53 | -8.615850e-47 |
| Msa0589730 | Msa0868820 | 0.820859 | 5.489662e-53 | -8.615850e-47 |
| Msa0589740 | Msa0868820 | 0.844048 | 9.622611e-59 | -8.615850e-47 |
| Msa0589750 | Msa0868820 | 0.815798 | 7.684662e-52 | -8.615850e-47 |
| Msa0591490 | Msa0868820 | 0.803961 | 2.715384e-49 | -8.615850e-47 |
| Msa0594320 | Msa0868820 | 0.843401 | 1.433692e-58 | -8.615850e-47 |
| Msa0594330 | Msa0868820 | 0.849139 | 3.916661e-60 | -8.615850e-47 |
| Msa0854840 | Msa0868820 | 0.827119 | 1.865737e-54 | -8.615850e-47 |
| Msa0859230 | Msa0868820 | 0.808857 | 2.520232e-50 | -8.615850e-47 |
| Msa0863840 | Msa0868820 | 0.811949 | 5.421141e-51 | -8.615850e-47 |
| Msa0863850 | Msa0868820 | 0.815785 | 7.738306e-52 | -8.615850e-47 |
| Msa0863860 | Msa0868820 | 0.823330 | 1.468172e-53 | -8.615850e-47 |
| Msa0864160 | Msa0868820 | 0.841136 | 5.705608e-58 | -8.615850e-47 |
| Msa0868820 | Msa0868870 | 0.836185 | 1.085297e-56 | -8.615850e-47 |
| Msa0868820 | Msa0883640 | 0.812735 | 3.651298e-51 | -8.615850e-47 |
| Msa0868820 | Msa0886370 | 0.805192 | 1.503423e-49 | -8.615850e-47 |
| Msa0868820 | Msa0896920 | 0.825743 | 3.969790e-54 | -8.615850e-47 |
| Msa0868820 | Msa0896950 | 0.810339 | 1.210786e-50 | -8.615850e-47 |
| Msa0868820 | Msa0902340 | 0.823757 | 1.166567e-53 | -8.615850e-47 |
| Msa0868820 | Msa0910830 | 0.818854 | 1.577161e-52 | -8.615850e-47 |
| Msa0868820 | Msa0913500 | 0.804123 | 2.512613e-49 | -8.615850e-47 |
| Msa0868820 | Msa0932890 | 0.956585 | 2.086664e-114 | -8.615850e-47 |
| Msa0868820 | Msa0932900 | 0.828800 | 7.351875e-55 | -8.615850e-47 |
| Msa0868820 | Msa0932910 | 0.826720 | 2.323166e-54 | -8.615850e-47 |
| Msa0868820 | Msa0932930 | 0.864893 | 8.760364e-65 | -8.615850e-47 |
| Msa0868820 | Msa0933580 | 0.902658 | 7.737367e-79 | -8.615850e-47 |
| Msa0868820 | Msa0933590 | 0.859735 | 3.367192e-63 | -8.615850e-47 |
| Msa0868820 | Msa0933610 | 0.871796 | 5.200492e-67 | -8.615850e-47 |
| Msa0868820 | Msa0948430 | 0.806452 | 8.168631e-50 | -8.615850e-47 |
| Msa0868820 | Msa0951060 | 0.800181 | 1.625504e-48 | -8.615850e-47 |
| Msa0868820 | Msa0960090 | 0.814277 | 1.672015e-51 | -8.615850e-47 |
| Msa0868820 | Msa0967820 | 0.810265 | 1.255858e-50 | -8.615850e-47 |
| Msa0868820 | Msa0970790 | 0.842189 | 3.010375e-58 | -8.615850e-47 |
| Msa0868820 | Msa0970820 | 0.812828 | 3.483853e-51 | -8.615850e-47 |
| Msa0868820 | Msa0982900 | 0.800776 | 1.229546e-48 | -8.615850e-47 |
| Msa0868820 | Msa0985700 | 0.815278 | 1.003287e-51 | -8.615850e-47 |
| Msa0868820 | Msa0993450 | 0.816053 | 6.742684e-52 | -8.615850e-47 |
| Msa0868820 | Msa0996980 | 0.810813 | 9.563964e-51 | -8.615850e-47 |
| Msa0868820 | Msa1003120 | 0.814782 | 1.293127e-51 | -8.615850e-47 |
| Msa0868820 | Msa1006170 | 0.840596 | 7.906054e-58 | -8.615850e-47 |
| Msa0868820 | Msa1022510 | 0.802230 | 6.190421e-49 | -8.615850e-47 |
| Msa0868820 | Msa1024350 | 0.855636 | 5.524259e-62 | -8.615850e-47 |
| Msa0868820 | Msa1026050 | 0.836742 | 7.829957e-57 | -8.615850e-47 |
| Msa0868820 | Msa1037530 | 0.800850 | 1.187511e-48 | -8.615850e-47 |
| Msa0868820 | Msa1046220 | 0.805932 | 1.051170e-49 | -8.615850e-47 |
| Msa0868820 | Msa1061670 | 0.811568 | 6.560189e-51 | -8.615850e-47 |
| Msa0868820 | Msa1061840 | 0.806900 | 6.572397e-50 | -8.615850e-47 |
| Msa0868820 | Msa1063260 | 0.800146 | 1.652329e-48 | -8.615850e-47 |
| Msa0868820 | Msa1064940 | 0.827365 | 1.629086e-54 | -8.615850e-47 |
| Msa0868820 | Msa1079870 | 0.804114 | 2.522770e-49 | -8.615850e-47 |
| Msa0868820 | Msa1087380 | 0.838192 | 3.327200e-57 | -8.615850e-47 |
| Msa0868820 | Msa1090990 | 0.800346 | 1.504799e-48 | -8.615850e-47 |
| Msa0868820 | Msa1098100 | 0.838792 | 2.330157e-57 | -8.615850e-47 |
| Msa0868820 | Msa1104960 | 0.801613 | 8.288364e-49 | -8.615850e-47 |
| Msa0868820 | Msa1106680 | 0.804913 | 1.719368e-49 | -8.615850e-47 |
| Msa0868820 | Msa1106960 | 0.805623 | 1.220721e-49 | -8.615850e-47 |
| Msa0868820 | Msa1109540 | 0.804223 | 2.394974e-49 | -8.615850e-47 |
| Msa0868820 | Msa1109880 | 0.847942 | 8.400312e-60 | -8.615850e-47 |
| Msa0868820 | Msa1109890 | 0.837800 | 4.198458e-57 | -8.615850e-47 |
| Msa0868820 | Msa1120680 | 0.800460 | 1.426722e-48 | -8.615850e-47 |
| Msa0868820 | Msa1133850 | 0.817936 | 2.545458e-52 | -8.615850e-47 |
| Msa0868820 | Msa1138110 | 0.852001 | 6.147524e-61 | -8.615850e-47 |
| Msa0868820 | Msa1142600 | 0.800481 | 1.412392e-48 | -8.615850e-47 |
| Msa0868820 | Msa1170340 | 0.851583 | 8.073647e-61 | -8.615850e-47 |
| Msa0868820 | Msa1214960 | 0.808007 | 3.826088e-50 | -8.615850e-47 |
| Msa0868820 | Msa1296870 | 0.808339 | 3.250714e-50 | -8.615850e-47 |
| Msa0868820 | Msa1300610 | 0.821384 | 4.154860e-53 | -8.615850e-47 |
| Msa0868820 | Msa1323030 | 0.835526 | 1.593934e-56 | -8.615850e-47 |
| Msa0868820 | Msa1323120 | 0.807324 | 5.342847e-50 | -8.615850e-47 |
| Msa0868820 | Msa1323150 | 0.829005 | 6.556758e-55 | -8.615850e-47 |
| Msa0868820 | Msa1329740 | 0.807702 | 4.443392e-50 | -8.615850e-47 |
| Msa0868820 | Msa1355330 | 0.829188 | 5.920352e-55 | -8.615850e-47 |
| Msa0868820 | Msa1355340 | 0.812888 | 3.379711e-51 | -8.615850e-47 |
| Msa0868820 | Msa1357860 | 0.816906 | 4.342525e-52 | -8.615850e-47 |
| Msa0868820 | Msa1373560 | 0.812912 | 3.339339e-51 | -8.615850e-47 |
| Msa0868820 | Msa1377520 | 0.810653 | 1.035719e-50 | -8.615850e-47 |
| Msa0868820 | Msa1411550 | 0.807925 | 3.983659e-50 | -8.615850e-47 |
| Msa0868820 | Msa1412360 | 0.806352 | 8.577044e-50 | -8.615850e-47 |
| Msa0868820 | Msa1419210 | 0.813680 | 2.263763e-51 | -8.615850e-47 |
| Msa0868820 | Msa1421130 | 0.800553 | 1.365309e-48 | -8.615850e-47 |
| Msa0868820 | Msa1445900 | 0.808418 | 3.128006e-50 | -8.615850e-47 |
| Msa0868820 | Msa1446090 | 0.804075 | 2.570299e-49 | -8.615850e-47 |
| Msa0868820 | Msa1448150 | 0.834956 | 2.219965e-56 | -8.615850e-47 |
| Msa0868820 | Msa1456600 | 0.815046 | 1.129826e-51 | -8.615850e-47 |
| Msa0868820 | Msa1459610 | 0.828407 | 9.147066e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0868820 | MtrunA17_Chr6g0449731 | 98.174 | 219 | 4 | 0 | 1 | 219 | 1 | 219 | 4.77e-157 | 433 |
| Msa0868820 | MtrunA17_Chr6g0449771 | 97.727 | 220 | 5 | 0 | 1 | 220 | 1 | 220 | 5.82e-157 | 433 |
| Msa0868820 | MtrunA17_Chr6g0449761 | 96.759 | 216 | 7 | 0 | 1 | 216 | 1 | 216 | 4.45e-153 | 424 |
| Msa0868820 | MtrunA17_Chr6g0449751 | 95.455 | 220 | 10 | 0 | 1 | 220 | 1 | 220 | 5.85e-153 | 423 |
| Msa0868820 | MtrunA17_Chr1g0189841 | 82.488 | 217 | 35 | 3 | 7 | 220 | 6 | 222 | 1.39e-124 | 351 |
| Msa0868820 | MtrunA17_Chr4g0007041 | 76.018 | 221 | 52 | 1 | 1 | 220 | 1 | 221 | 2.36e-118 | 335 |
| Msa0868820 | MtrunA17_Chr4g0007051 | 77.523 | 218 | 47 | 2 | 5 | 220 | 4 | 221 | 2.66e-118 | 335 |
| Msa0868820 | MtrunA17_Chr4g0007031 | 77.523 | 218 | 47 | 2 | 5 | 220 | 4 | 221 | 2.78e-118 | 335 |
| Msa0868820 | MtrunA17_Chr5g0419971 | 77.523 | 218 | 47 | 2 | 5 | 220 | 4 | 221 | 2.78e-118 | 335 |
| Msa0868820 | MtrunA17_Chr5g0419981 | 77.523 | 218 | 47 | 2 | 5 | 220 | 4 | 221 | 2.78e-118 | 335 |
| Msa0868820 | MtrunA17_Chr2g0285871 | 77.064 | 218 | 48 | 2 | 5 | 220 | 4 | 221 | 3.69e-118 | 335 |
| Msa0868820 | MtrunA17_Chr6g0449781 | 75.000 | 220 | 54 | 1 | 1 | 220 | 1 | 219 | 2.78e-114 | 325 |
| Msa0868820 | MtrunA17_Chr6g0449791 | 71.154 | 208 | 59 | 1 | 1 | 207 | 1 | 208 | 1.15e-102 | 295 |
| Msa0868820 | MtrunA17_Chr1g0156131 | 62.814 | 199 | 64 | 2 | 19 | 215 | 19 | 209 | 4.54e-83 | 246 |
| Msa0868820 | MtrunA17_Chr2g0292831 | 62.814 | 199 | 67 | 2 | 19 | 215 | 19 | 212 | 1.48e-82 | 244 |
| Msa0868820 | MtrunA17_Chr2g0292901 | 62.000 | 200 | 68 | 3 | 19 | 215 | 19 | 213 | 1.74e-79 | 237 |
| Msa0868820 | MtrunA17_Chr2g0292861 | 65.116 | 172 | 57 | 2 | 47 | 215 | 7 | 178 | 9.09e-75 | 223 |
| Msa0868820 | MtrunA17_Chr2g0292841 | 65.116 | 172 | 57 | 2 | 47 | 215 | 7 | 178 | 2.66e-73 | 220 |
| Msa0868820 | MtrunA17_Chr1g0193671 | 46.190 | 210 | 103 | 4 | 11 | 214 | 8 | 213 | 3.91e-58 | 182 |
| Msa0868820 | MtrunA17_Chr7g0271211 | 50.000 | 196 | 92 | 3 | 22 | 215 | 20 | 211 | 6.54e-55 | 174 |
| Msa0868820 | MtrunA17_Chr1g0193421 | 47.000 | 200 | 100 | 3 | 18 | 215 | 20 | 215 | 3.12e-54 | 173 |
| Msa0868820 | MtrunA17_Chr2g0292911 | 68.644 | 118 | 35 | 1 | 47 | 162 | 7 | 124 | 5.98e-52 | 164 |
| Msa0868820 | MtrunA17_Chr5g0414971 | 48.223 | 197 | 95 | 4 | 22 | 215 | 27 | 219 | 1.07e-51 | 166 |
| Msa0868820 | MtrunA17_Chr1g0210761 | 43.519 | 216 | 107 | 6 | 2 | 215 | 5 | 207 | 1.62e-47 | 155 |
| Msa0868820 | MtrunA17_Chr2g0300561 | 41.589 | 214 | 110 | 5 | 1 | 212 | 3 | 203 | 1.26e-41 | 140 |
| Msa0868820 | MtrunA17_Chr1g0178711 | 39.048 | 210 | 118 | 4 | 12 | 215 | 16 | 221 | 1.66e-41 | 140 |
| Msa0868820 | MtrunA17_Chr8g0344021 | 43.455 | 191 | 89 | 5 | 5 | 189 | 7 | 184 | 5.76e-41 | 139 |
| Msa0868820 | MtrunA17_Chr2g0300591 | 39.252 | 214 | 115 | 5 | 1 | 212 | 3 | 203 | 8.38e-39 | 133 |
| Msa0868820 | MtrunA17_Chr2g0300581 | 39.070 | 215 | 116 | 5 | 1 | 213 | 3 | 204 | 8.47e-39 | 133 |
| Msa0868820 | MtrunA17_Chr3g0084521 | 38.679 | 212 | 116 | 5 | 5 | 215 | 6 | 204 | 9.81e-35 | 122 |
| Msa0868820 | MtrunA17_Chr8g0343934 | 37.736 | 212 | 119 | 5 | 5 | 215 | 6 | 205 | 3.81e-34 | 121 |
| Msa0868820 | MtrunA17_Chr3g0084531 | 38.679 | 212 | 117 | 5 | 5 | 215 | 6 | 205 | 4.29e-34 | 121 |
| Msa0868820 | MtrunA17_Chr8g0343911 | 39.474 | 190 | 107 | 4 | 26 | 213 | 19 | 202 | 6.21e-34 | 120 |
| Msa0868820 | MtrunA17_Chr8g0335851 | 40.476 | 168 | 97 | 2 | 22 | 188 | 26 | 191 | 8.03e-34 | 120 |
| Msa0868820 | MtrunA17_Chr8g0343954 | 40.212 | 189 | 105 | 4 | 28 | 215 | 24 | 205 | 5.62e-33 | 118 |
| Msa0868820 | MtrunA17_Chr3g0084511 | 37.736 | 212 | 118 | 5 | 5 | 215 | 6 | 204 | 1.03e-32 | 117 |
| Msa0868820 | MtrunA17_Chr2g0313961 | 38.191 | 199 | 115 | 4 | 18 | 215 | 14 | 205 | 3.40e-32 | 116 |
| Msa0868820 | MtrunA17_Chr2g0302171 | 38.208 | 212 | 118 | 5 | 5 | 215 | 6 | 205 | 4.63e-32 | 115 |
| Msa0868820 | MtrunA17_Chr2g0297231 | 37.688 | 199 | 116 | 4 | 18 | 215 | 14 | 205 | 1.07e-31 | 114 |
| Msa0868820 | MtrunA17_Chr2g0297241 | 37.688 | 199 | 116 | 4 | 18 | 215 | 14 | 205 | 3.35e-31 | 113 |
| Msa0868820 | MtrunA17_Chr4g0003361 | 39.655 | 174 | 98 | 4 | 43 | 215 | 34 | 201 | 1.31e-30 | 112 |
| Msa0868820 | MtrunA17_Chr8g0344051 | 37.327 | 217 | 115 | 6 | 5 | 215 | 7 | 208 | 2.78e-30 | 111 |
| Msa0868820 | MtrunA17_Chr8g0343961 | 36.449 | 214 | 123 | 6 | 3 | 215 | 4 | 205 | 2.93e-30 | 111 |
| Msa0868820 | MtrunA17_Chr2g0301611 | 36.683 | 199 | 118 | 4 | 18 | 215 | 14 | 205 | 1.48e-29 | 109 |
| Msa0868820 | MtrunA17_Chr8g0344031 | 35.377 | 212 | 129 | 4 | 5 | 215 | 3 | 207 | 5.25e-29 | 108 |
| Msa0868820 | MtrunA17_Chr3g0130241 | 33.023 | 215 | 137 | 4 | 1 | 211 | 65 | 276 | 1.52e-28 | 108 |
| Msa0868820 | MtrunA17_Chr2g0321581 | 35.747 | 221 | 111 | 8 | 2 | 215 | 8 | 204 | 3.23e-28 | 105 |
| Msa0868820 | MtrunA17_Chr2g0286171 | 35.023 | 217 | 130 | 6 | 1 | 215 | 1 | 208 | 3.25e-28 | 105 |
| Msa0868820 | MtrunA17_Chr2g0321591 | 35.945 | 217 | 108 | 8 | 6 | 215 | 12 | 204 | 3.87e-28 | 105 |
| Msa0868820 | MtrunA17_Chr8g0343921 | 38.947 | 190 | 106 | 6 | 28 | 215 | 22 | 203 | 4.56e-28 | 105 |
| Msa0868820 | MtrunA17_Chr8g0344041 | 35.052 | 194 | 117 | 4 | 24 | 215 | 23 | 209 | 8.58e-28 | 104 |
| Msa0868820 | MtrunA17_Chr4g0026191 | 40.559 | 143 | 80 | 3 | 74 | 215 | 67 | 205 | 1.42e-27 | 104 |
| Msa0868820 | MtrunA17_Chr4g0026201 | 40.559 | 143 | 80 | 3 | 74 | 215 | 67 | 205 | 1.42e-27 | 104 |
| Msa0868820 | MtrunA17_Chr2g0321601 | 34.884 | 215 | 121 | 6 | 2 | 215 | 7 | 203 | 2.07e-27 | 103 |
| Msa0868820 | MtrunA17_Chr5g0411961 | 34.673 | 199 | 122 | 4 | 18 | 215 | 14 | 205 | 2.57e-27 | 103 |
| Msa0868820 | MtrunA17_Chr2g0302541 | 36.649 | 191 | 113 | 4 | 26 | 215 | 22 | 205 | 3.97e-27 | 103 |
| Msa0868820 | MtrunA17_Chr4g0012651 | 37.173 | 191 | 112 | 4 | 26 | 215 | 22 | 205 | 5.45e-27 | 102 |
| Msa0868820 | MtrunA17_Chr7g0217811 | 36.649 | 191 | 113 | 4 | 26 | 215 | 22 | 205 | 7.58e-27 | 102 |
| Msa0868820 | MtrunA17_Chr3g0115141 | 37.037 | 189 | 109 | 5 | 28 | 215 | 27 | 206 | 4.61e-26 | 100 |
| Msa0868820 | MtrunA17_Chr2g0292881 | 70.175 | 57 | 17 | 0 | 93 | 149 | 1 | 57 | 1.12e-22 | 87.0 |
| Msa0868820 | MtrunA17_Chr3g0084551 | 31.472 | 197 | 119 | 7 | 18 | 212 | 14 | 196 | 4.74e-16 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0868820 | AT5G39120.1 | 63.927 | 219 | 75 | 3 | 1 | 215 | 1 | 219 | 1.01e-92 | 271 |
| Msa0868820 | AT5G39150.1 | 63.470 | 219 | 76 | 3 | 1 | 215 | 1 | 219 | 8.80e-92 | 268 |
| Msa0868820 | AT5G39180.1 | 63.470 | 219 | 76 | 3 | 1 | 215 | 1 | 219 | 1.29e-91 | 268 |
| Msa0868820 | AT5G39110.1 | 63.256 | 215 | 76 | 2 | 4 | 215 | 6 | 220 | 1.43e-90 | 266 |
| Msa0868820 | AT5G38940.1 | 66.837 | 196 | 63 | 1 | 22 | 215 | 26 | 221 | 9.40e-90 | 263 |
| Msa0868820 | AT5G38940.2 | 66.837 | 196 | 63 | 1 | 22 | 215 | 50 | 245 | 1.87e-89 | 264 |
| Msa0868820 | AT5G38930.1 | 67.172 | 198 | 63 | 1 | 20 | 215 | 24 | 221 | 6.73e-89 | 261 |
| Msa0868820 | AT5G39130.1 | 66.332 | 199 | 63 | 3 | 20 | 215 | 22 | 219 | 1.68e-88 | 260 |
| Msa0868820 | AT5G39160.1 | 66.332 | 199 | 63 | 3 | 20 | 215 | 22 | 219 | 3.58e-88 | 259 |
| Msa0868820 | AT3G05950.1 | 66.029 | 209 | 66 | 4 | 11 | 215 | 14 | 221 | 3.97e-88 | 259 |
| Msa0868820 | AT5G39190.1 | 66.332 | 199 | 63 | 3 | 20 | 215 | 22 | 219 | 6.32e-88 | 259 |
| Msa0868820 | AT5G38910.1 | 63.470 | 219 | 76 | 4 | 1 | 215 | 1 | 219 | 5.10e-87 | 256 |
| Msa0868820 | AT5G38960.1 | 64.179 | 201 | 69 | 2 | 18 | 215 | 22 | 222 | 1.57e-86 | 255 |
| Msa0868820 | AT4G14630.1 | 64.322 | 199 | 68 | 2 | 20 | 215 | 24 | 222 | 7.87e-85 | 251 |
| Msa0868820 | AT5G39160.3 | 63.819 | 199 | 64 | 3 | 20 | 215 | 22 | 215 | 1.85e-83 | 247 |
| Msa0868820 | AT3G04200.1 | 61.111 | 216 | 77 | 4 | 3 | 215 | 11 | 222 | 3.15e-81 | 242 |
| Msa0868820 | AT3G04150.1 | 56.757 | 222 | 88 | 5 | 1 | 215 | 1 | 221 | 5.34e-75 | 226 |
| Msa0868820 | AT5G39190.2 | 59.391 | 197 | 58 | 2 | 20 | 215 | 22 | 197 | 1.52e-74 | 224 |
| Msa0868820 | AT5G39160.2 | 59.898 | 197 | 57 | 3 | 20 | 215 | 22 | 197 | 3.15e-74 | 223 |
| Msa0868820 | AT3G04190.1 | 57.843 | 204 | 82 | 3 | 15 | 215 | 19 | 221 | 3.00e-73 | 221 |
| Msa0868820 | AT3G04150.2 | 53.419 | 234 | 90 | 5 | 1 | 215 | 1 | 234 | 8.53e-73 | 221 |
| Msa0868820 | AT3G04180.1 | 55.882 | 204 | 86 | 3 | 15 | 215 | 19 | 221 | 2.30e-70 | 214 |
| Msa0868820 | AT3G04170.1 | 56.459 | 209 | 83 | 5 | 11 | 215 | 14 | 218 | 7.53e-70 | 213 |
| Msa0868820 | AT5G38910.2 | 51.598 | 219 | 65 | 5 | 1 | 215 | 1 | 182 | 1.53e-60 | 188 |
| Msa0868820 | AT1G02335.1 | 44.907 | 216 | 112 | 4 | 2 | 215 | 5 | 215 | 4.44e-57 | 180 |
| Msa0868820 | AT3G05930.1 | 46.364 | 220 | 108 | 5 | 1 | 215 | 1 | 215 | 4.54e-57 | 180 |
| Msa0868820 | AT1G09560.1 | 49.239 | 197 | 94 | 3 | 22 | 216 | 24 | 216 | 5.59e-56 | 177 |
| Msa0868820 | AT3G62020.1 | 46.698 | 212 | 106 | 4 | 7 | 215 | 8 | 215 | 3.46e-55 | 176 |
| Msa0868820 | AT5G26700.1 | 46.890 | 209 | 92 | 6 | 11 | 215 | 16 | 209 | 2.57e-54 | 173 |
| Msa0868820 | AT1G18970.1 | 45.540 | 213 | 108 | 4 | 7 | 217 | 14 | 220 | 7.47e-53 | 169 |
| Msa0868820 | AT1G18980.1 | 48.990 | 198 | 93 | 4 | 22 | 217 | 29 | 220 | 6.68e-52 | 167 |
| Msa0868820 | AT1G10460.1 | 43.216 | 199 | 106 | 5 | 22 | 215 | 19 | 215 | 2.12e-48 | 158 |
| Msa0868820 | AT3G62020.2 | 47.778 | 180 | 89 | 3 | 39 | 215 | 9 | 186 | 5.05e-48 | 156 |
| Msa0868820 | AT3G10080.1 | 40.796 | 201 | 111 | 4 | 19 | 215 | 23 | 219 | 2.35e-42 | 143 |
| Msa0868820 | AT3G10080.2 | 40.594 | 202 | 112 | 4 | 18 | 215 | 93 | 290 | 1.23e-41 | 143 |
| Msa0868820 | AT5G20630.1 | 41.885 | 191 | 99 | 4 | 1 | 189 | 3 | 183 | 3.71e-39 | 134 |
| Msa0868820 | AT5G61750.1 | 42.162 | 185 | 97 | 4 | 5 | 187 | 7 | 183 | 5.57e-38 | 131 |
| Msa0868820 | AT1G74820.1 | 37.156 | 218 | 121 | 5 | 8 | 215 | 14 | 225 | 7.92e-34 | 121 |
| Msa0868820 | AT1G72610.1 | 38.095 | 189 | 109 | 4 | 26 | 212 | 19 | 201 | 3.17e-31 | 114 |
| Msa0868820 | AT5G38950.1 | 64.062 | 64 | 23 | 0 | 144 | 207 | 2 | 65 | 1.59e-20 | 83.2 |
Find 46 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTATTGCTAATGCTGTATT+TGG | 0.057045 | 6_1:+2644240 | Msa0868820:CDS |
| CTTGTTTGTGACAGCCTTCT+TGG | 0.121595 | 6_1:+2643134 | Msa0868820:CDS |
| GTAACCGTTAACGAGATATT+AGG | 0.210042 | 6_1:+2643934 | Msa0868820:CDS |
| TAGTGATTACACCTGGATTT+TGG | 0.253401 | 6_1:-2644221 | None:intergenic |
| CACCGAAATTCTTATAGTTT+TGG | 0.263394 | 6_1:+2644038 | Msa0868820:CDS |
| TTCACTTTCAATTGAATGTT+GGG | 0.325573 | 6_1:+2644163 | Msa0868820:CDS |
| CTCCAAAACTATAAGAATTT+CGG | 0.331062 | 6_1:-2644040 | None:intergenic |
| GGAAATGCTCTCGCCATTGC+TGG | 0.341695 | 6_1:+2644189 | Msa0868820:CDS |
| AGTATACATACCACCATTCT+TGG | 0.356363 | 6_1:-2643226 | None:intergenic |
| TCATTTGGTGTAGCAAGCTT+TGG | 0.358003 | 6_1:-2643850 | None:intergenic |
| CTCGCGTTGACTTTGCATCT+AGG | 0.379629 | 6_1:+2643983 | Msa0868820:CDS |
| ATCACAAAAGTACTAAATAA+AGG | 0.392770 | 6_1:+2644111 | Msa0868820:CDS |
| TAACCGTTAACGAGATATTA+GGG | 0.393305 | 6_1:+2643935 | Msa0868820:CDS |
| TAACCCTAATATCTCGTTAA+CGG | 0.394123 | 6_1:-2643938 | None:intergenic |
| TGAAAGTGAATGAGACCAAT+TGG | 0.411740 | 6_1:-2644150 | None:intergenic |
| CCACTATGTTATTGTCCACT+TGG | 0.415021 | 6_1:-2644305 | None:intergenic |
| ATTCACTTTCAATTGAATGT+TGG | 0.422768 | 6_1:+2644162 | Msa0868820:CDS |
| TCGCGTTGACTTTGCATCTA+GGG | 0.434930 | 6_1:+2643984 | Msa0868820:CDS |
| TTTCAATTGAATGTTGGGTA+TGG | 0.435827 | 6_1:+2644168 | Msa0868820:CDS |
| ACAAAAGTCTTGTAGAGGGC+TGG | 0.457530 | 6_1:-2643187 | None:intergenic |
| CTATTGCTAATGCTGTATTT+GGG | 0.459960 | 6_1:+2644241 | Msa0868820:CDS |
| ATAAGAATTTCGGTGGCTCT+AGG | 0.464256 | 6_1:-2644030 | None:intergenic |
| GATGTGTTTGTGTTTCCAAT+TGG | 0.465821 | 6_1:+2644135 | Msa0868820:CDS |
| ATTGTCCACTTGGAAAGCTT+TGG | 0.467417 | 6_1:-2644295 | None:intergenic |
| CAAAAGTCTTGTAGAGGGCT+GGG | 0.476086 | 6_1:-2643186 | None:intergenic |
| TGGAGGGTACACTTTATGTC+GGG | 0.491331 | 6_1:+2644058 | Msa0868820:CDS |
| TTGGAGGGTACACTTTATGT+CGG | 0.515920 | 6_1:+2644057 | Msa0868820:CDS |
| TTGTAGAGGGCTGGGATCAA+AGG | 0.523699 | 6_1:-2643178 | None:intergenic |
| CGCGTTGACTTTGCATCTAG+GGG | 0.532914 | 6_1:+2643985 | Msa0868820:CDS |
| TAAGAATTTCGGTGGCTCTA+GGG | 0.540929 | 6_1:-2644029 | None:intergenic |
| GGACTTAGCAGCCAAAATCC+AGG | 0.549743 | 6_1:+2644210 | Msa0868820:CDS |
| GTGGCTCTAGGGTGAGTATG+TGG | 0.562834 | 6_1:-2644018 | None:intergenic |
| ACATGATGCTAAAGCCAAGA+AGG | 0.585634 | 6_1:-2643148 | None:intergenic |
| TTGGCTGCTAAGTCCAGCAA+TGG | 0.600072 | 6_1:-2644202 | None:intergenic |
| ATATTAGGGTTAAACACACT+TGG | 0.603049 | 6_1:+2643949 | Msa0868820:CDS |
| GCCACACAAAAGTCTTGTAG+AGG | 0.603085 | 6_1:-2643192 | None:intergenic |
| CCAAGTGGACAATAACATAG+TGG | 0.613774 | 6_1:+2644305 | Msa0868820:CDS |
| GCTCTAGGGTGAGTATGTGG+AGG | 0.620396 | 6_1:-2644015 | None:intergenic |
| TTAGCAATAGTGATTACACC+TGG | 0.624375 | 6_1:-2644228 | None:intergenic |
| ATCAATGACACCAAGAATGG+TGG | 0.627435 | 6_1:+2643216 | Msa0868820:CDS |
| GCTATCAATGACACCAAGAA+TGG | 0.633041 | 6_1:+2643213 | Msa0868820:CDS |
| CAAAACTATAAGAATTTCGG+TGG | 0.640429 | 6_1:-2644037 | None:intergenic |
| AGGGCTGGGATCAAAGGCAA+AGG | 0.641928 | 6_1:-2643172 | None:intergenic |
| CCACACAAAAGTCTTGTAGA+GGG | 0.655758 | 6_1:-2643191 | None:intergenic |
| GGAAACACGTCAAATCCACT+TGG | 0.662851 | 6_1:+2643895 | Msa0868820:CDS |
| TCTCACCAAAGCTTTCCAAG+TGG | 0.665947 | 6_1:+2644290 | Msa0868820:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATATATATATATATATAT+GGG | - | chr6_1:2643758-2643777 | None:intergenic | 0.0% |
| !! | TTATATATATATATATATAT+GGG | - | chr6_1:2643758-2643777 | None:intergenic | 0.0% |
| !! | ATATATATATATACATATAG+GGG | + | chr6_1:2643438-2643457 | Msa0868820:intron | 10.0% |
| !! | ATATATATATATACATATAG+GGG | + | chr6_1:2643438-2643457 | Msa0868820:intron | 10.0% |
| !! | AAAGAAATCATTAAAAGATA+TGG | - | chr6_1:2643264-2643283 | None:intergenic | 15.0% |
| !!! | TTTATTTACTTTTAGTTTTC+TGG | + | chr6_1:2643281-2643300 | Msa0868820:intron | 15.0% |
| !! | AAAGAAATCATTAAAAGATA+TGG | - | chr6_1:2643264-2643283 | None:intergenic | 15.0% |
| !!! | TTTATTTACTTTTAGTTTTC+TGG | + | chr6_1:2643281-2643300 | Msa0868820:intron | 15.0% |
| !!! | ATCACAAAAGTACTAAATAA+AGG | + | chr6_1:2644111-2644130 | Msa0868820:CDS | 20.0% |
| !!! | ACAATCTTCAAAAACAATTT+TGG | + | chr6_1:2644328-2644347 | Msa0868820:CDS | 20.0% |
| !!! | CAATCTTCAAAAACAATTTT+GGG | + | chr6_1:2644329-2644348 | Msa0868820:CDS | 20.0% |
| !!! | ATCACAAAAGTACTAAATAA+AGG | + | chr6_1:2644111-2644130 | Msa0868820:CDS | 20.0% |
| !!! | ACAATCTTCAAAAACAATTT+TGG | + | chr6_1:2644328-2644347 | Msa0868820:CDS | 20.0% |
| !!! | CAATCTTCAAAAACAATTTT+GGG | + | chr6_1:2644329-2644348 | Msa0868820:CDS | 20.0% |
| ! | TATATATACATATAGGGGTT+TGG | + | chr6_1:2643443-2643462 | Msa0868820:intron | 25.0% |
| ! | ATATATACATATAGGGGTTT+GGG | + | chr6_1:2643444-2643463 | Msa0868820:intron | 25.0% |
| ! | GCAAGTAAATAACTAAAAAG+TGG | + | chr6_1:2643511-2643530 | Msa0868820:intron | 25.0% |
| ! | GCAAGTAAATAACTAAAAAG+TGG | + | chr6_1:2643511-2643530 | Msa0868820:intron | 25.0% |
| ! | ACTGAGAAAAAGAAATCATT+TGG | - | chr6_1:2643868-2643887 | None:intergenic | 25.0% |
| !! | TTCTTTTTCTCAGTTAAAGA+AGG | + | chr6_1:2643874-2643893 | Msa0868820:CDS | 25.0% |
| ! | CTCCAAAACTATAAGAATTT+CGG | - | chr6_1:2644043-2644062 | None:intergenic | 25.0% |
| !!! | GAAATTCTTATAGTTTTGGA+GGG | + | chr6_1:2644042-2644061 | Msa0868820:CDS | 25.0% |
| ! | ATTCACTTTCAATTGAATGT+TGG | + | chr6_1:2644162-2644181 | Msa0868820:CDS | 25.0% |
| ! | TTCACTTTCAATTGAATGTT+GGG | + | chr6_1:2644163-2644182 | Msa0868820:CDS | 25.0% |
| !!! | AGAACTTCTGAAGAAATTTT+TGG | - | chr6_1:2644273-2644292 | None:intergenic | 25.0% |
| ! | TATATATACATATAGGGGTT+TGG | + | chr6_1:2643443-2643462 | Msa0868820:intron | 25.0% |
| ! | ATATATACATATAGGGGTTT+GGG | + | chr6_1:2643444-2643463 | Msa0868820:intron | 25.0% |
| ! | GCAAGTAAATAACTAAAAAG+TGG | + | chr6_1:2643511-2643530 | Msa0868820:intron | 25.0% |
| ! | GCAAGTAAATAACTAAAAAG+TGG | + | chr6_1:2643511-2643530 | Msa0868820:intron | 25.0% |
| ! | ACTGAGAAAAAGAAATCATT+TGG | - | chr6_1:2643868-2643887 | None:intergenic | 25.0% |
| !! | TTCTTTTTCTCAGTTAAAGA+AGG | + | chr6_1:2643874-2643893 | Msa0868820:CDS | 25.0% |
| ! | CTCCAAAACTATAAGAATTT+CGG | - | chr6_1:2644043-2644062 | None:intergenic | 25.0% |
| !!! | GAAATTCTTATAGTTTTGGA+GGG | + | chr6_1:2644042-2644061 | Msa0868820:CDS | 25.0% |
| ! | ATTCACTTTCAATTGAATGT+TGG | + | chr6_1:2644162-2644181 | Msa0868820:CDS | 25.0% |
| ! | TTCACTTTCAATTGAATGTT+GGG | + | chr6_1:2644163-2644182 | Msa0868820:CDS | 25.0% |
| !!! | AGAACTTCTGAAGAAATTTT+TGG | - | chr6_1:2644273-2644292 | None:intergenic | 25.0% |
| TATATACATATAGGGGTTTG+GGG | + | chr6_1:2643445-2643464 | Msa0868820:intron | 30.0% | |
| TTATAGCAACATACACCTTA+GGG | - | chr6_1:2643546-2643565 | None:intergenic | 30.0% | |
| ACCTTCTAACAATAACAAGT+GGG | + | chr6_1:2643569-2643588 | Msa0868820:intron | 30.0% | |
| ACTCCCACATAAAAATTAGT+GGG | + | chr6_1:2643717-2643736 | Msa0868820:intron | 30.0% | |
| ! | ACACCCACTAATTTTTATGT+GGG | - | chr6_1:2643723-2643742 | None:intergenic | 30.0% |
| ! | TGTTTTGCAGTATTTGTGAA+TGG | + | chr6_1:2643811-2643830 | Msa0868820:intron | 30.0% |
| ! | TGTGAATGGAAAATTTTGCA+AGG | + | chr6_1:2643825-2643844 | Msa0868820:CDS | 30.0% |
| TAACCGTTAACGAGATATTA+GGG | + | chr6_1:2643935-2643954 | Msa0868820:CDS | 30.0% | |
| TAACCCTAATATCTCGTTAA+CGG | - | chr6_1:2643941-2643960 | None:intergenic | 30.0% | |
| ATATTAGGGTTAAACACACT+TGG | + | chr6_1:2643949-2643968 | Msa0868820:CDS | 30.0% | |
| CAAAACTATAAGAATTTCGG+TGG | - | chr6_1:2644040-2644059 | None:intergenic | 30.0% | |
| ! | CACCGAAATTCTTATAGTTT+TGG | + | chr6_1:2644038-2644057 | Msa0868820:CDS | 30.0% |
| !!! | CGAAATTCTTATAGTTTTGG+AGG | + | chr6_1:2644041-2644060 | Msa0868820:CDS | 30.0% |
| ! | TTAGTACTTTTGTGATGAGA+CGG | - | chr6_1:2644107-2644126 | None:intergenic | 30.0% |
| TTTCAATTGAATGTTGGGTA+TGG | + | chr6_1:2644168-2644187 | Msa0868820:CDS | 30.0% | |
| ACTATTGCTAATGCTGTATT+TGG | + | chr6_1:2644240-2644259 | Msa0868820:CDS | 30.0% | |
| CTATTGCTAATGCTGTATTT+GGG | + | chr6_1:2644241-2644260 | Msa0868820:CDS | 30.0% | |
| ! | TCTTCAAAAACAATTTTGGG+TGG | + | chr6_1:2644332-2644351 | Msa0868820:CDS | 30.0% |
| TATATACATATAGGGGTTTG+GGG | + | chr6_1:2643445-2643464 | Msa0868820:intron | 30.0% | |
| TTATAGCAACATACACCTTA+GGG | - | chr6_1:2643546-2643565 | None:intergenic | 30.0% | |
| ACCTTCTAACAATAACAAGT+GGG | + | chr6_1:2643569-2643588 | Msa0868820:intron | 30.0% | |
| ACTCCCACATAAAAATTAGT+GGG | + | chr6_1:2643717-2643736 | Msa0868820:intron | 30.0% | |
| ! | ACACCCACTAATTTTTATGT+GGG | - | chr6_1:2643723-2643742 | None:intergenic | 30.0% |
| ! | TGTTTTGCAGTATTTGTGAA+TGG | + | chr6_1:2643811-2643830 | Msa0868820:intron | 30.0% |
| ! | TGTGAATGGAAAATTTTGCA+AGG | + | chr6_1:2643825-2643844 | Msa0868820:CDS | 30.0% |
| TAACCGTTAACGAGATATTA+GGG | + | chr6_1:2643935-2643954 | Msa0868820:CDS | 30.0% | |
| TAACCCTAATATCTCGTTAA+CGG | - | chr6_1:2643941-2643960 | None:intergenic | 30.0% | |
| ATATTAGGGTTAAACACACT+TGG | + | chr6_1:2643949-2643968 | Msa0868820:CDS | 30.0% | |
| CAAAACTATAAGAATTTCGG+TGG | - | chr6_1:2644040-2644059 | None:intergenic | 30.0% | |
| ! | CACCGAAATTCTTATAGTTT+TGG | + | chr6_1:2644038-2644057 | Msa0868820:CDS | 30.0% |
| !!! | CGAAATTCTTATAGTTTTGG+AGG | + | chr6_1:2644041-2644060 | Msa0868820:CDS | 30.0% |
| ! | TTAGTACTTTTGTGATGAGA+CGG | - | chr6_1:2644107-2644126 | None:intergenic | 30.0% |
| TTTCAATTGAATGTTGGGTA+TGG | + | chr6_1:2644168-2644187 | Msa0868820:CDS | 30.0% | |
| ACTATTGCTAATGCTGTATT+TGG | + | chr6_1:2644240-2644259 | Msa0868820:CDS | 30.0% | |
| CTATTGCTAATGCTGTATTT+GGG | + | chr6_1:2644241-2644260 | Msa0868820:CDS | 30.0% | |
| ! | TCTTCAAAAACAATTTTGGG+TGG | + | chr6_1:2644332-2644351 | Msa0868820:CDS | 30.0% |
| AGTATACATACCACCATTCT+TGG | - | chr6_1:2643229-2643248 | None:intergenic | 35.0% | |
| AAGTGGTTAAATACACCCTA+AGG | + | chr6_1:2643528-2643547 | Msa0868820:intron | 35.0% | |
| GTTATAGCAACATACACCTT+AGG | - | chr6_1:2643547-2643566 | None:intergenic | 35.0% | |
| CACCTTCTAACAATAACAAG+TGG | + | chr6_1:2643568-2643587 | Msa0868820:intron | 35.0% | |
| !! | ACCCACTTGTTATTGTTAGA+AGG | - | chr6_1:2643573-2643592 | None:intergenic | 35.0% |
| TGTGTTCTAGCAAATCCTAT+AGG | + | chr6_1:2643592-2643611 | Msa0868820:intron | 35.0% | |
| !!! | ACACCCACTAGTTTTTATGT+GGG | + | chr6_1:2643628-2643647 | Msa0868820:intron | 35.0% |
| ACTCCCACATAAAAACTAGT+GGG | - | chr6_1:2643634-2643653 | None:intergenic | 35.0% | |
| AAGTGGTTAATTACACCCTA+AGG | + | chr6_1:2643677-2643696 | Msa0868820:intron | 35.0% | |
| TTTAGCAAAGCTACACCTTA+GGG | - | chr6_1:2643695-2643714 | None:intergenic | 35.0% | |
| ! | TTTTAGCAAAGCTACACCTT+AGG | - | chr6_1:2643696-2643715 | None:intergenic | 35.0% |
| CACTCCCACATAAAAATTAG+TGG | + | chr6_1:2643716-2643735 | Msa0868820:intron | 35.0% | |
| ! | CACACCCACTAATTTTTATG+TGG | - | chr6_1:2643724-2643743 | None:intergenic | 35.0% |
| GTAACCGTTAACGAGATATT+AGG | + | chr6_1:2643934-2643953 | Msa0868820:CDS | 35.0% | |
| GATGTGTTTGTGTTTCCAAT+TGG | + | chr6_1:2644135-2644154 | Msa0868820:CDS | 35.0% | |
| TGAAAGTGAATGAGACCAAT+TGG | - | chr6_1:2644153-2644172 | None:intergenic | 35.0% | |
| ! | TAGTGATTACACCTGGATTT+TGG | - | chr6_1:2644224-2644243 | None:intergenic | 35.0% |
| TTAGCAATAGTGATTACACC+TGG | - | chr6_1:2644231-2644250 | None:intergenic | 35.0% | |
| AGTATACATACCACCATTCT+TGG | - | chr6_1:2643229-2643248 | None:intergenic | 35.0% | |
| AAGTGGTTAAATACACCCTA+AGG | + | chr6_1:2643528-2643547 | Msa0868820:intron | 35.0% | |
| GTTATAGCAACATACACCTT+AGG | - | chr6_1:2643547-2643566 | None:intergenic | 35.0% | |
| CACCTTCTAACAATAACAAG+TGG | + | chr6_1:2643568-2643587 | Msa0868820:intron | 35.0% | |
| !! | ACCCACTTGTTATTGTTAGA+AGG | - | chr6_1:2643573-2643592 | None:intergenic | 35.0% |
| TGTGTTCTAGCAAATCCTAT+AGG | + | chr6_1:2643592-2643611 | Msa0868820:intron | 35.0% | |
| !!! | ACACCCACTAGTTTTTATGT+GGG | + | chr6_1:2643628-2643647 | Msa0868820:intron | 35.0% |
| ACTCCCACATAAAAACTAGT+GGG | - | chr6_1:2643634-2643653 | None:intergenic | 35.0% | |
| AAGTGGTTAATTACACCCTA+AGG | + | chr6_1:2643677-2643696 | Msa0868820:intron | 35.0% | |
| TTTAGCAAAGCTACACCTTA+GGG | - | chr6_1:2643695-2643714 | None:intergenic | 35.0% | |
| ! | TTTTAGCAAAGCTACACCTT+AGG | - | chr6_1:2643696-2643715 | None:intergenic | 35.0% |
| CACTCCCACATAAAAATTAG+TGG | + | chr6_1:2643716-2643735 | Msa0868820:intron | 35.0% | |
| ! | CACACCCACTAATTTTTATG+TGG | - | chr6_1:2643724-2643743 | None:intergenic | 35.0% |
| GTAACCGTTAACGAGATATT+AGG | + | chr6_1:2643934-2643953 | Msa0868820:CDS | 35.0% | |
| GATGTGTTTGTGTTTCCAAT+TGG | + | chr6_1:2644135-2644154 | Msa0868820:CDS | 35.0% | |
| TGAAAGTGAATGAGACCAAT+TGG | - | chr6_1:2644153-2644172 | None:intergenic | 35.0% | |
| ! | TAGTGATTACACCTGGATTT+TGG | - | chr6_1:2644224-2644243 | None:intergenic | 35.0% |
| TTAGCAATAGTGATTACACC+TGG | - | chr6_1:2644231-2644250 | None:intergenic | 35.0% | |
| ACATGATGCTAAAGCCAAGA+AGG | - | chr6_1:2643151-2643170 | None:intergenic | 40.0% | |
| ! | CCACACAAAAGTCTTGTAGA+GGG | - | chr6_1:2643194-2643213 | None:intergenic | 40.0% |
| GCTATCAATGACACCAAGAA+TGG | + | chr6_1:2643213-2643232 | Msa0868820:CDS | 40.0% | |
| ATCAATGACACCAAGAATGG+TGG | + | chr6_1:2643216-2643235 | Msa0868820:CDS | 40.0% | |
| !!! | ACACCCACTAGTTTTTACGT+GGG | + | chr6_1:2643479-2643498 | Msa0868820:intron | 40.0% |
| ACTCCCACGTAAAAACTAGT+GGG | - | chr6_1:2643485-2643504 | None:intergenic | 40.0% | |
| !!! | CACACCCACTAGTTTTTATG+TGG | + | chr6_1:2643627-2643646 | Msa0868820:intron | 40.0% |
| CACTCCCACATAAAAACTAG+TGG | - | chr6_1:2643635-2643654 | None:intergenic | 40.0% | |
| !! | TCATTTGGTGTAGCAAGCTT+TGG | - | chr6_1:2643853-2643872 | None:intergenic | 40.0% |
| !!! | TGTGTCACTTTTGAACCAAG+TGG | - | chr6_1:2643913-2643932 | None:intergenic | 40.0% |
| ! | TAAGAATTTCGGTGGCTCTA+GGG | - | chr6_1:2644032-2644051 | None:intergenic | 40.0% |
| ATAAGAATTTCGGTGGCTCT+AGG | - | chr6_1:2644033-2644052 | None:intergenic | 40.0% | |
| ! | TTGGAGGGTACACTTTATGT+CGG | + | chr6_1:2644057-2644076 | Msa0868820:CDS | 40.0% |
| ! | TTTGTGATGAGACGGTTTTC+TGG | - | chr6_1:2644099-2644118 | None:intergenic | 40.0% |
| ATTGTCCACTTGGAAAGCTT+TGG | - | chr6_1:2644298-2644317 | None:intergenic | 40.0% | |
| CCACTATGTTATTGTCCACT+TGG | - | chr6_1:2644308-2644327 | None:intergenic | 40.0% | |
| CCAAGTGGACAATAACATAG+TGG | + | chr6_1:2644305-2644324 | Msa0868820:CDS | 40.0% | |
| ACATGATGCTAAAGCCAAGA+AGG | - | chr6_1:2643151-2643170 | None:intergenic | 40.0% | |
| ! | CCACACAAAAGTCTTGTAGA+GGG | - | chr6_1:2643194-2643213 | None:intergenic | 40.0% |
| GCTATCAATGACACCAAGAA+TGG | + | chr6_1:2643213-2643232 | Msa0868820:CDS | 40.0% | |
| ATCAATGACACCAAGAATGG+TGG | + | chr6_1:2643216-2643235 | Msa0868820:CDS | 40.0% | |
| !!! | ACACCCACTAGTTTTTACGT+GGG | + | chr6_1:2643479-2643498 | Msa0868820:intron | 40.0% |
| ACTCCCACGTAAAAACTAGT+GGG | - | chr6_1:2643485-2643504 | None:intergenic | 40.0% | |
| !!! | CACACCCACTAGTTTTTATG+TGG | + | chr6_1:2643627-2643646 | Msa0868820:intron | 40.0% |
| CACTCCCACATAAAAACTAG+TGG | - | chr6_1:2643635-2643654 | None:intergenic | 40.0% | |
| !! | TCATTTGGTGTAGCAAGCTT+TGG | - | chr6_1:2643853-2643872 | None:intergenic | 40.0% |
| !!! | TGTGTCACTTTTGAACCAAG+TGG | - | chr6_1:2643913-2643932 | None:intergenic | 40.0% |
| ! | TAAGAATTTCGGTGGCTCTA+GGG | - | chr6_1:2644032-2644051 | None:intergenic | 40.0% |
| ATAAGAATTTCGGTGGCTCT+AGG | - | chr6_1:2644033-2644052 | None:intergenic | 40.0% | |
| ! | TTGGAGGGTACACTTTATGT+CGG | + | chr6_1:2644057-2644076 | Msa0868820:CDS | 40.0% |
| ! | TTTGTGATGAGACGGTTTTC+TGG | - | chr6_1:2644099-2644118 | None:intergenic | 40.0% |
| ATTGTCCACTTGGAAAGCTT+TGG | - | chr6_1:2644298-2644317 | None:intergenic | 40.0% | |
| CCACTATGTTATTGTCCACT+TGG | - | chr6_1:2644308-2644327 | None:intergenic | 40.0% | |
| CCAAGTGGACAATAACATAG+TGG | + | chr6_1:2644305-2644324 | Msa0868820:CDS | 40.0% | |
| CTTGTTTGTGACAGCCTTCT+TGG | + | chr6_1:2643134-2643153 | Msa0868820:CDS | 45.0% | |
| ! | CAAAAGTCTTGTAGAGGGCT+GGG | - | chr6_1:2643189-2643208 | None:intergenic | 45.0% |
| ! | ACAAAAGTCTTGTAGAGGGC+TGG | - | chr6_1:2643190-2643209 | None:intergenic | 45.0% |
| ! | CCCTCTACAAGACTTTTGTG+TGG | + | chr6_1:2643191-2643210 | Msa0868820:CDS | 45.0% |
| ! | GCCACACAAAAGTCTTGTAG+AGG | - | chr6_1:2643195-2643214 | None:intergenic | 45.0% |
| !!! | CACACCCACTAGTTTTTACG+TGG | + | chr6_1:2643478-2643497 | Msa0868820:intron | 45.0% |
| CACTCCCACGTAAAAACTAG+TGG | - | chr6_1:2643486-2643505 | None:intergenic | 45.0% | |
| GTGTTCTAGCAAGTGCCTAT+AGG | - | chr6_1:2643610-2643629 | None:intergenic | 45.0% | |
| GGAAACACGTCAAATCCACT+TGG | + | chr6_1:2643895-2643914 | Msa0868820:CDS | 45.0% | |
| !! | TCGCGTTGACTTTGCATCTA+GGG | + | chr6_1:2643984-2644003 | Msa0868820:CDS | 45.0% |
| ! | TGGAGGGTACACTTTATGTC+GGG | + | chr6_1:2644058-2644077 | Msa0868820:CDS | 45.0% |
| TCTCACCAAAGCTTTCCAAG+TGG | + | chr6_1:2644290-2644309 | Msa0868820:CDS | 45.0% | |
| CTTGTTTGTGACAGCCTTCT+TGG | + | chr6_1:2643134-2643153 | Msa0868820:CDS | 45.0% | |
| ! | CAAAAGTCTTGTAGAGGGCT+GGG | - | chr6_1:2643189-2643208 | None:intergenic | 45.0% |
| ! | ACAAAAGTCTTGTAGAGGGC+TGG | - | chr6_1:2643190-2643209 | None:intergenic | 45.0% |
| ! | CCCTCTACAAGACTTTTGTG+TGG | + | chr6_1:2643191-2643210 | Msa0868820:CDS | 45.0% |
| ! | GCCACACAAAAGTCTTGTAG+AGG | - | chr6_1:2643195-2643214 | None:intergenic | 45.0% |
| !!! | CACACCCACTAGTTTTTACG+TGG | + | chr6_1:2643478-2643497 | Msa0868820:intron | 45.0% |
| CACTCCCACGTAAAAACTAG+TGG | - | chr6_1:2643486-2643505 | None:intergenic | 45.0% | |
| GTGTTCTAGCAAGTGCCTAT+AGG | - | chr6_1:2643610-2643629 | None:intergenic | 45.0% | |
| GGAAACACGTCAAATCCACT+TGG | + | chr6_1:2643895-2643914 | Msa0868820:CDS | 45.0% | |
| !! | TCGCGTTGACTTTGCATCTA+GGG | + | chr6_1:2643984-2644003 | Msa0868820:CDS | 45.0% |
| ! | TGGAGGGTACACTTTATGTC+GGG | + | chr6_1:2644058-2644077 | Msa0868820:CDS | 45.0% |
| TCTCACCAAAGCTTTCCAAG+TGG | + | chr6_1:2644290-2644309 | Msa0868820:CDS | 45.0% | |
| !! | ATATATATATATATACATAT+AGG | + | chr6_1:2643436-2643455 | Msa0868820:intron | 5.0% |
| !! | TATATATATATATACATATA+GGG | + | chr6_1:2643437-2643456 | Msa0868820:intron | 5.0% |
| !! | TATATATATATATATATATG+GGG | - | chr6_1:2643757-2643776 | None:intergenic | 5.0% |
| !! | CTTATATATATATATATATA+TGG | - | chr6_1:2643759-2643778 | None:intergenic | 5.0% |
| !! | ATATATATATATATACATAT+AGG | + | chr6_1:2643436-2643455 | Msa0868820:intron | 5.0% |
| !! | TATATATATATATACATATA+GGG | + | chr6_1:2643437-2643456 | Msa0868820:intron | 5.0% |
| !! | TATATATATATATATATATG+GGG | - | chr6_1:2643757-2643776 | None:intergenic | 5.0% |
| !! | CTTATATATATATATATATA+TGG | - | chr6_1:2643759-2643778 | None:intergenic | 5.0% |
| TTGTAGAGGGCTGGGATCAA+AGG | - | chr6_1:2643181-2643200 | None:intergenic | 50.0% | |
| !! | CTCGCGTTGACTTTGCATCT+AGG | + | chr6_1:2643983-2644002 | Msa0868820:CDS | 50.0% |
| !! | CGCGTTGACTTTGCATCTAG+GGG | + | chr6_1:2643985-2644004 | Msa0868820:CDS | 50.0% |
| TTGGCTGCTAAGTCCAGCAA+TGG | - | chr6_1:2644205-2644224 | None:intergenic | 50.0% | |
| GGACTTAGCAGCCAAAATCC+AGG | + | chr6_1:2644210-2644229 | Msa0868820:CDS | 50.0% | |
| TTGTAGAGGGCTGGGATCAA+AGG | - | chr6_1:2643181-2643200 | None:intergenic | 50.0% | |
| !! | CTCGCGTTGACTTTGCATCT+AGG | + | chr6_1:2643983-2644002 | Msa0868820:CDS | 50.0% |
| !! | CGCGTTGACTTTGCATCTAG+GGG | + | chr6_1:2643985-2644004 | Msa0868820:CDS | 50.0% |
| TTGGCTGCTAAGTCCAGCAA+TGG | - | chr6_1:2644205-2644224 | None:intergenic | 50.0% | |
| GGACTTAGCAGCCAAAATCC+AGG | + | chr6_1:2644210-2644229 | Msa0868820:CDS | 50.0% | |
| AGGGCTGGGATCAAAGGCAA+AGG | - | chr6_1:2643175-2643194 | None:intergenic | 55.0% | |
| !! | GCTCTAGGGTGAGTATGTGG+AGG | - | chr6_1:2644018-2644037 | None:intergenic | 55.0% |
| !! | GTGGCTCTAGGGTGAGTATG+TGG | - | chr6_1:2644021-2644040 | None:intergenic | 55.0% |
| GGAAATGCTCTCGCCATTGC+TGG | + | chr6_1:2644189-2644208 | Msa0868820:CDS | 55.0% | |
| AGGGCTGGGATCAAAGGCAA+AGG | - | chr6_1:2643175-2643194 | None:intergenic | 55.0% | |
| !! | GCTCTAGGGTGAGTATGTGG+AGG | - | chr6_1:2644018-2644037 | None:intergenic | 55.0% |
| !! | GTGGCTCTAGGGTGAGTATG+TGG | - | chr6_1:2644021-2644040 | None:intergenic | 55.0% |
| GGAAATGCTCTCGCCATTGC+TGG | + | chr6_1:2644189-2644208 | Msa0868820:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 2643120 | 2644365 | 2643120 | ID=Msa0868820;Name=Msa0868820 |
| chr6_1 | mRNA | 2643120 | 2644365 | 2643120 | ID=Msa0868820-mRNA-1;Parent=Msa0868820;Name=Msa0868820-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|220 |
| chr6_1 | exon | 2643120 | 2643237 | 2643120 | ID=Msa0868820-mRNA-1:exon:771;Parent=Msa0868820-mRNA-1 |
| chr6_1 | exon | 2643821 | 2644365 | 2643821 | ID=Msa0868820-mRNA-1:exon:772;Parent=Msa0868820-mRNA-1 |
| chr6_1 | CDS | 2643120 | 2643237 | 2643120 | ID=Msa0868820-mRNA-1:cds;Parent=Msa0868820-mRNA-1 |
| chr6_1 | CDS | 2643821 | 2644365 | 2643821 | ID=Msa0868820-mRNA-1:cds;Parent=Msa0868820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
