Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0932890 | sp|Q6K5Q0|GL21_ORYSJ | 67.431 | 218 | 66 | 3 | 1 | 215 | 1 | 216 | 2.76e-93 | 275 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0932890 | G7KQ15 | 97.717 | 219 | 5 | 0 | 1 | 219 | 1 | 219 | 8.29e-153 | 432 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0027860 | Msa0932890 | 0.806854 | 6.719605e-50 | -8.615850e-47 |
| Msa0048950 | Msa0932890 | 0.817478 | 3.229436e-52 | -8.615850e-47 |
| Msa0059880 | Msa0932890 | 0.836748 | 7.803922e-57 | -8.615850e-47 |
| Msa0064990 | Msa0932890 | 0.807606 | 4.655225e-50 | -8.615850e-47 |
| Msa0072940 | Msa0932890 | 0.811230 | 7.766100e-51 | -8.615850e-47 |
| Msa0605400 | Msa0932890 | 0.802034 | 6.793225e-49 | -8.615850e-47 |
| Msa0605470 | Msa0932890 | 0.807130 | 5.875517e-50 | -8.615850e-47 |
| Msa0630130 | Msa0932890 | 0.833269 | 5.875532e-56 | -8.615850e-47 |
| Msa0634290 | Msa0932890 | 0.841168 | 5.594927e-58 | -8.615850e-47 |
| Msa0639410 | Msa0932890 | 0.803424 | 3.509258e-49 | -8.615850e-47 |
| Msa0646210 | Msa0932890 | 0.835848 | 1.321130e-56 | -8.615850e-47 |
| Msa0668210 | Msa0932890 | 0.841284 | 5.216320e-58 | -8.615850e-47 |
| Msa0668220 | Msa0932890 | 0.835904 | 1.278927e-56 | -8.615850e-47 |
| Msa0668230 | Msa0932890 | 0.836783 | 7.641427e-57 | -8.615850e-47 |
| Msa0670360 | Msa0932890 | 0.816282 | 5.994233e-52 | -8.615850e-47 |
| Msa0671490 | Msa0932890 | 0.819566 | 1.086160e-52 | -8.615850e-47 |
| Msa0671640 | Msa0932890 | 0.815977 | 7.009117e-52 | -8.615850e-47 |
| Msa0678620 | Msa0932890 | 0.819172 | 1.335430e-52 | -8.615850e-47 |
| Msa0711240 | Msa0932890 | 0.832462 | 9.326261e-56 | -8.615850e-47 |
| Msa0727480 | Msa0932890 | 0.820955 | 5.216263e-53 | -8.615850e-47 |
| Msa0728520 | Msa0932890 | 0.810522 | 1.105307e-50 | -8.615850e-47 |
| Msa0738570 | Msa0932890 | 0.805218 | 1.484028e-49 | -8.615850e-47 |
| Msa0751960 | Msa0932890 | 0.819339 | 1.223093e-52 | -8.615850e-47 |
| Msa0753410 | Msa0932890 | 0.803713 | 3.057425e-49 | -8.615850e-47 |
| Msa0768670 | Msa0932890 | 0.817000 | 4.137485e-52 | -8.615850e-47 |
| Msa0768720 | Msa0932890 | 0.830072 | 3.606902e-55 | -8.615850e-47 |
| Msa0776540 | Msa0932890 | 0.811339 | 7.354420e-51 | -8.615850e-47 |
| Msa0777070 | Msa0932890 | 0.810767 | 9.787565e-51 | -8.615850e-47 |
| Msa0783580 | Msa0932890 | 0.800930 | 1.143964e-48 | -8.615850e-47 |
| Msa0787860 | Msa0932890 | 0.836522 | 8.907476e-57 | -8.615850e-47 |
| Msa0792330 | Msa0932890 | 0.811812 | 5.804679e-51 | -8.615850e-47 |
| Msa0795330 | Msa0932890 | 0.806350 | 8.584642e-50 | -8.615850e-47 |
| Msa0806930 | Msa0932890 | 0.801224 | 9.960271e-49 | -8.615850e-47 |
| Msa0814160 | Msa0932890 | 0.803006 | 4.282472e-49 | -8.615850e-47 |
| Msa0816140 | Msa0932890 | 0.814612 | 1.409997e-51 | -8.615850e-47 |
| Msa0824850 | Msa0932890 | 0.822760 | 1.993370e-53 | -8.615850e-47 |
| Msa0129850 | Msa0932890 | 0.800616 | 1.325667e-48 | -8.615850e-47 |
| Msa0139460 | Msa0932890 | 0.802699 | 4.956551e-49 | -8.615850e-47 |
| Msa0140270 | Msa0932890 | 0.809979 | 1.447759e-50 | -8.615850e-47 |
| Msa0150910 | Msa0932890 | 0.837932 | 3.882741e-57 | -8.615850e-47 |
| Msa0155850 | Msa0932890 | 0.821546 | 3.811341e-53 | -8.615850e-47 |
| Msa0190670 | Msa0932890 | 0.842075 | 3.225784e-58 | -8.615850e-47 |
| Msa0199860 | Msa0932890 | 0.801448 | 8.962308e-49 | -8.615850e-47 |
| Msa0207640 | Msa0932890 | 0.808021 | 3.799821e-50 | -8.615850e-47 |
| Msa0207930 | Msa0932890 | 0.807186 | 5.717012e-50 | -8.615850e-47 |
| Msa0212550 | Msa0932890 | 0.808037 | 3.770970e-50 | -8.615850e-47 |
| Msa0225910 | Msa0932890 | 0.810346 | 1.206772e-50 | -8.615850e-47 |
| Msa0398690 | Msa0932890 | 0.819992 | 8.680497e-53 | -8.615850e-47 |
| Msa0414480 | Msa0932890 | 0.819243 | 1.286330e-52 | -8.615850e-47 |
| Msa0418150 | Msa0932890 | 0.805334 | 1.403356e-49 | -8.615850e-47 |
| Msa0420890 | Msa0932890 | 0.812468 | 4.175767e-51 | -8.615850e-47 |
| Msa0423690 | Msa0932890 | 0.800592 | 1.340798e-48 | -8.615850e-47 |
| Msa0430460 | Msa0932890 | 0.808902 | 2.465236e-50 | -8.615850e-47 |
| Msa0464300 | Msa0932890 | 0.823433 | 1.388721e-53 | -8.615850e-47 |
| Msa0469450 | Msa0932890 | 0.810526 | 1.103565e-50 | -8.615850e-47 |
| Msa0259110 | Msa0932890 | 0.813614 | 2.341248e-51 | -8.615850e-47 |
| Msa0266640 | Msa0932890 | 0.842124 | 3.131033e-58 | -8.615850e-47 |
| Msa0266650 | Msa0932890 | 0.815621 | 8.416127e-52 | -8.615850e-47 |
| Msa0274260 | Msa0932890 | 0.823702 | 1.201322e-53 | -8.615850e-47 |
| Msa0278460 | Msa0932890 | 0.813419 | 2.583887e-51 | -8.615850e-47 |
| Msa0278950 | Msa0932890 | 0.828509 | 8.640327e-55 | -8.615850e-47 |
| Msa0281190 | Msa0932890 | 0.809248 | 2.078523e-50 | -8.615850e-47 |
| Msa0328090 | Msa0932890 | 0.806779 | 6.969091e-50 | -8.615850e-47 |
| Msa0342130 | Msa0932890 | 0.818289 | 2.118104e-52 | -8.615850e-47 |
| Msa0343720 | Msa0932890 | 0.821470 | 3.970014e-53 | -8.615850e-47 |
| Msa0349910 | Msa0932890 | 0.806812 | 6.857465e-50 | -8.615850e-47 |
| Msa0533510 | Msa0932890 | 0.838349 | 3.032459e-57 | -8.615850e-47 |
| Msa0533520 | Msa0932890 | 0.813300 | 2.745103e-51 | -8.615850e-47 |
| Msa0535570 | Msa0932890 | 0.811298 | 7.508064e-51 | -8.615850e-47 |
| Msa0538440 | Msa0932890 | 0.861735 | 8.326643e-64 | -8.615850e-47 |
| Msa0538450 | Msa0932890 | 0.864597 | 1.084797e-64 | -8.615850e-47 |
| Msa0538520 | Msa0932890 | 0.862321 | 5.505014e-64 | -8.615850e-47 |
| Msa0538530 | Msa0932890 | 0.843535 | 1.319673e-58 | -8.615850e-47 |
| Msa0549920 | Msa0932890 | 0.812752 | 3.619314e-51 | -8.615850e-47 |
| Msa0549930 | Msa0932890 | 0.806868 | 6.674641e-50 | -8.615850e-47 |
| Msa0579530 | Msa0932890 | 0.802409 | 5.689073e-49 | -8.615850e-47 |
| Msa0589720 | Msa0932890 | 0.809620 | 1.729356e-50 | -8.615850e-47 |
| Msa0589730 | Msa0932890 | 0.820616 | 6.244432e-53 | -8.615850e-47 |
| Msa0589740 | Msa0932890 | 0.830630 | 2.635872e-55 | -8.615850e-47 |
| Msa0589750 | Msa0932890 | 0.809638 | 1.714123e-50 | -8.615850e-47 |
| Msa0594320 | Msa0932890 | 0.820876 | 5.440374e-53 | -8.615850e-47 |
| Msa0594330 | Msa0932890 | 0.841338 | 5.047566e-58 | -8.615850e-47 |
| Msa0854840 | Msa0932890 | 0.816298 | 5.942552e-52 | -8.615850e-47 |
| Msa0863840 | Msa0932890 | 0.811352 | 7.307792e-51 | -8.615850e-47 |
| Msa0863850 | Msa0932890 | 0.813593 | 2.366244e-51 | -8.615850e-47 |
| Msa0863860 | Msa0932890 | 0.815753 | 7.865530e-52 | -8.615850e-47 |
| Msa0864160 | Msa0932890 | 0.828329 | 9.549632e-55 | -8.615850e-47 |
| Msa0868820 | Msa0932890 | 0.956585 | 2.086664e-114 | -8.615850e-47 |
| Msa0883640 | Msa0932890 | 0.823635 | 1.245443e-53 | -8.615850e-47 |
| Msa0886370 | Msa0932890 | 0.801597 | 8.353887e-49 | -8.615850e-47 |
| Msa0896920 | Msa0932890 | 0.811706 | 6.122923e-51 | -8.615850e-47 |
| Msa0896950 | Msa0932890 | 0.807575 | 4.727922e-50 | -8.615850e-47 |
| Msa0902340 | Msa0932890 | 0.823582 | 1.281876e-53 | -8.615850e-47 |
| Msa0910830 | Msa0932890 | 0.830580 | 2.710553e-55 | -8.615850e-47 |
| Msa0932890 | Msa0932900 | 0.806723 | 7.162462e-50 | -8.615850e-47 |
| Msa0932890 | Msa0932910 | 0.805275 | 1.444434e-49 | -8.615850e-47 |
| Msa0932890 | Msa0932930 | 0.837260 | 5.773571e-57 | -8.615850e-47 |
| Msa0932890 | Msa0933580 | 0.907336 | 5.660434e-81 | -8.615850e-47 |
| Msa0932890 | Msa0933590 | 0.837874 | 4.017309e-57 | -8.615850e-47 |
| Msa0932890 | Msa0933610 | 0.848119 | 7.508843e-60 | -8.615850e-47 |
| Msa0932890 | Msa0960090 | 0.824704 | 6.986194e-54 | -8.615850e-47 |
| Msa0932890 | Msa0967820 | 0.812431 | 4.254473e-51 | -8.615850e-47 |
| Msa0932890 | Msa0970790 | 0.809076 | 2.262806e-50 | -8.615850e-47 |
| Msa0932890 | Msa0985700 | 0.824477 | 7.904081e-54 | -8.615850e-47 |
| Msa0932890 | Msa0993450 | 0.804196 | 2.426098e-49 | -8.615850e-47 |
| Msa0932890 | Msa1003120 | 0.800009 | 1.761882e-48 | -8.615850e-47 |
| Msa0932890 | Msa1006170 | 0.826334 | 2.872035e-54 | -8.615850e-47 |
| Msa0932890 | Msa1024350 | 0.841799 | 3.816642e-58 | -8.615850e-47 |
| Msa0932890 | Msa1026050 | 0.831617 | 1.508543e-55 | -8.615850e-47 |
| Msa0932890 | Msa1037530 | 0.800414 | 1.457564e-48 | -8.615850e-47 |
| Msa0932890 | Msa1061670 | 0.811021 | 8.621908e-51 | -8.615850e-47 |
| Msa0932890 | Msa1064940 | 0.820054 | 8.400478e-53 | -8.615850e-47 |
| Msa0932890 | Msa1087380 | 0.827879 | 1.225559e-54 | -8.615850e-47 |
| Msa0932890 | Msa1098100 | 0.832324 | 1.008783e-55 | -8.615850e-47 |
| Msa0932890 | Msa1104960 | 0.804412 | 2.187376e-49 | -8.615850e-47 |
| Msa0932890 | Msa1106960 | 0.804684 | 1.919487e-49 | -8.615850e-47 |
| Msa0932890 | Msa1109880 | 0.854015 | 1.630878e-61 | -8.615850e-47 |
| Msa0932890 | Msa1109890 | 0.832686 | 8.206584e-56 | -8.615850e-47 |
| Msa0932890 | Msa1120680 | 0.804893 | 1.736078e-49 | -8.615850e-47 |
| Msa0932890 | Msa1133850 | 0.801056 | 1.077899e-48 | -8.615850e-47 |
| Msa0932890 | Msa1138110 | 0.843680 | 1.207162e-58 | -8.615850e-47 |
| Msa0932890 | Msa1156240 | 0.802299 | 5.993175e-49 | -8.615850e-47 |
| Msa0932890 | Msa1170340 | 0.833016 | 6.792024e-56 | -8.615850e-47 |
| Msa0932890 | Msa1214960 | 0.810093 | 1.368015e-50 | -8.615850e-47 |
| Msa0932890 | Msa1296870 | 0.811079 | 8.376993e-51 | -8.615850e-47 |
| Msa0932890 | Msa1300610 | 0.815572 | 8.628825e-52 | -8.615850e-47 |
| Msa0932890 | Msa1323030 | 0.823014 | 1.739798e-53 | -8.615850e-47 |
| Msa0932890 | Msa1323150 | 0.813202 | 2.883584e-51 | -8.615850e-47 |
| Msa0932890 | Msa1329740 | 0.801855 | 7.392973e-49 | -8.615850e-47 |
| Msa0932890 | Msa1355330 | 0.815549 | 8.731694e-52 | -8.615850e-47 |
| Msa0932890 | Msa1355340 | 0.805925 | 1.055103e-49 | -8.615850e-47 |
| Msa0932890 | Msa1357860 | 0.819074 | 1.405868e-52 | -8.615850e-47 |
| Msa0932890 | Msa1373560 | 0.812953 | 3.270381e-51 | -8.615850e-47 |
| Msa0932890 | Msa1411550 | 0.810304 | 1.232142e-50 | -8.615850e-47 |
| Msa0932890 | Msa1419210 | 0.814760 | 1.307504e-51 | -8.615850e-47 |
| Msa0932890 | Msa1445900 | 0.805983 | 1.025792e-49 | -8.615850e-47 |
| Msa0932890 | Msa1448150 | 0.820161 | 7.937145e-53 | -8.615850e-47 |
| Msa0932890 | Msa1456600 | 0.811268 | 7.619984e-51 | -8.615850e-47 |
| Msa0932890 | Msa1459610 | 0.815461 | 9.135340e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0932890 | MtrunA17_Chr6g0449731 | 97.717 | 219 | 5 | 0 | 1 | 219 | 1 | 219 | 1.60e-156 | 432 |
| Msa0932890 | MtrunA17_Chr6g0449771 | 97.273 | 220 | 6 | 0 | 1 | 220 | 1 | 220 | 1.86e-156 | 432 |
| Msa0932890 | MtrunA17_Chr6g0449751 | 95.000 | 220 | 11 | 0 | 1 | 220 | 1 | 220 | 1.33e-152 | 422 |
| Msa0932890 | MtrunA17_Chr6g0449761 | 96.296 | 216 | 8 | 0 | 1 | 216 | 1 | 216 | 1.44e-152 | 423 |
| Msa0932890 | MtrunA17_Chr1g0189841 | 82.028 | 217 | 36 | 3 | 7 | 220 | 6 | 222 | 3.81e-124 | 350 |
| Msa0932890 | MtrunA17_Chr4g0007041 | 76.018 | 221 | 52 | 1 | 1 | 220 | 1 | 221 | 1.49e-118 | 336 |
| Msa0932890 | MtrunA17_Chr4g0007051 | 77.064 | 218 | 48 | 2 | 5 | 220 | 4 | 221 | 6.75e-118 | 334 |
| Msa0932890 | MtrunA17_Chr4g0007031 | 77.064 | 218 | 48 | 2 | 5 | 220 | 4 | 221 | 7.13e-118 | 334 |
| Msa0932890 | MtrunA17_Chr5g0419971 | 77.064 | 218 | 48 | 2 | 5 | 220 | 4 | 221 | 7.13e-118 | 334 |
| Msa0932890 | MtrunA17_Chr5g0419981 | 77.064 | 218 | 48 | 2 | 5 | 220 | 4 | 221 | 7.13e-118 | 334 |
| Msa0932890 | MtrunA17_Chr2g0285871 | 76.606 | 218 | 49 | 2 | 5 | 220 | 4 | 221 | 1.41e-117 | 333 |
| Msa0932890 | MtrunA17_Chr6g0449781 | 75.000 | 220 | 54 | 1 | 1 | 220 | 1 | 219 | 3.46e-114 | 325 |
| Msa0932890 | MtrunA17_Chr6g0449791 | 71.154 | 208 | 59 | 1 | 1 | 207 | 1 | 208 | 2.13e-102 | 295 |
| Msa0932890 | MtrunA17_Chr1g0156131 | 62.814 | 199 | 64 | 2 | 19 | 215 | 19 | 209 | 3.77e-83 | 246 |
| Msa0932890 | MtrunA17_Chr2g0292831 | 62.814 | 199 | 67 | 2 | 19 | 215 | 19 | 212 | 1.53e-82 | 244 |
| Msa0932890 | MtrunA17_Chr2g0292901 | 62.000 | 200 | 68 | 3 | 19 | 215 | 19 | 213 | 1.88e-79 | 237 |
| Msa0932890 | MtrunA17_Chr2g0292861 | 65.116 | 172 | 57 | 2 | 47 | 215 | 7 | 178 | 7.97e-75 | 224 |
| Msa0932890 | MtrunA17_Chr2g0292841 | 65.116 | 172 | 57 | 2 | 47 | 215 | 7 | 178 | 2.72e-73 | 220 |
| Msa0932890 | MtrunA17_Chr1g0193671 | 46.190 | 210 | 103 | 4 | 11 | 214 | 8 | 213 | 3.11e-58 | 183 |
| Msa0932890 | MtrunA17_Chr7g0271211 | 50.000 | 196 | 92 | 3 | 22 | 215 | 20 | 211 | 6.47e-55 | 174 |
| Msa0932890 | MtrunA17_Chr1g0193421 | 47.000 | 200 | 100 | 3 | 18 | 215 | 20 | 215 | 3.52e-54 | 172 |
| Msa0932890 | MtrunA17_Chr2g0292911 | 68.644 | 118 | 35 | 1 | 47 | 162 | 7 | 124 | 6.25e-52 | 164 |
| Msa0932890 | MtrunA17_Chr5g0414971 | 48.223 | 197 | 95 | 4 | 22 | 215 | 27 | 219 | 1.08e-51 | 166 |
| Msa0932890 | MtrunA17_Chr1g0210761 | 43.519 | 216 | 107 | 6 | 2 | 215 | 5 | 207 | 1.29e-47 | 155 |
| Msa0932890 | MtrunA17_Chr2g0300561 | 44.920 | 187 | 95 | 4 | 28 | 212 | 23 | 203 | 2.73e-41 | 139 |
| Msa0932890 | MtrunA17_Chr1g0178711 | 38.571 | 210 | 119 | 4 | 12 | 215 | 16 | 221 | 5.42e-41 | 139 |
| Msa0932890 | MtrunA17_Chr8g0344021 | 43.455 | 191 | 89 | 5 | 5 | 189 | 7 | 184 | 9.46e-41 | 138 |
| Msa0932890 | MtrunA17_Chr2g0300581 | 38.605 | 215 | 117 | 5 | 1 | 213 | 3 | 204 | 2.95e-38 | 132 |
| Msa0932890 | MtrunA17_Chr2g0300591 | 38.785 | 214 | 116 | 5 | 1 | 212 | 3 | 203 | 3.22e-38 | 131 |
| Msa0932890 | MtrunA17_Chr3g0084521 | 38.679 | 212 | 116 | 5 | 5 | 215 | 6 | 204 | 7.74e-35 | 123 |
| Msa0932890 | MtrunA17_Chr3g0084531 | 38.679 | 212 | 117 | 5 | 5 | 215 | 6 | 205 | 3.73e-34 | 121 |
| Msa0932890 | MtrunA17_Chr8g0343934 | 37.736 | 212 | 119 | 5 | 5 | 215 | 6 | 205 | 4.33e-34 | 121 |
| Msa0932890 | MtrunA17_Chr8g0343911 | 36.744 | 215 | 121 | 5 | 1 | 213 | 1 | 202 | 5.18e-34 | 120 |
| Msa0932890 | MtrunA17_Chr8g0335851 | 40.476 | 168 | 97 | 2 | 22 | 188 | 26 | 191 | 9.63e-34 | 120 |
| Msa0932890 | MtrunA17_Chr3g0084511 | 38.208 | 212 | 117 | 5 | 5 | 215 | 6 | 204 | 3.68e-33 | 118 |
| Msa0932890 | MtrunA17_Chr8g0343954 | 40.212 | 189 | 105 | 4 | 28 | 215 | 24 | 205 | 5.44e-33 | 118 |
| Msa0932890 | MtrunA17_Chr2g0302171 | 38.208 | 212 | 118 | 5 | 5 | 215 | 6 | 205 | 2.60e-32 | 116 |
| Msa0932890 | MtrunA17_Chr2g0313961 | 38.191 | 199 | 115 | 4 | 18 | 215 | 14 | 205 | 3.29e-32 | 116 |
| Msa0932890 | MtrunA17_Chr2g0297231 | 37.688 | 199 | 116 | 4 | 18 | 215 | 14 | 205 | 1.14e-31 | 114 |
| Msa0932890 | MtrunA17_Chr2g0297241 | 37.688 | 199 | 116 | 4 | 18 | 215 | 14 | 205 | 2.95e-31 | 114 |
| Msa0932890 | MtrunA17_Chr4g0003361 | 39.655 | 174 | 98 | 4 | 43 | 215 | 34 | 201 | 1.20e-30 | 112 |
| Msa0932890 | MtrunA17_Chr8g0343961 | 36.449 | 214 | 123 | 6 | 3 | 215 | 4 | 205 | 2.75e-30 | 111 |
| Msa0932890 | MtrunA17_Chr8g0344051 | 37.327 | 217 | 115 | 6 | 5 | 215 | 7 | 208 | 3.16e-30 | 111 |
| Msa0932890 | MtrunA17_Chr2g0301611 | 36.683 | 199 | 118 | 4 | 18 | 215 | 14 | 205 | 1.39e-29 | 109 |
| Msa0932890 | MtrunA17_Chr8g0344031 | 35.377 | 212 | 129 | 4 | 5 | 215 | 3 | 207 | 3.98e-29 | 108 |
| Msa0932890 | MtrunA17_Chr3g0130241 | 33.488 | 215 | 136 | 4 | 1 | 211 | 65 | 276 | 5.20e-29 | 110 |
| Msa0932890 | MtrunA17_Chr2g0321581 | 35.747 | 221 | 111 | 8 | 2 | 215 | 8 | 204 | 2.32e-28 | 106 |
| Msa0932890 | MtrunA17_Chr2g0321591 | 35.945 | 217 | 108 | 8 | 6 | 215 | 12 | 204 | 2.58e-28 | 106 |
| Msa0932890 | MtrunA17_Chr8g0343921 | 38.947 | 190 | 106 | 6 | 28 | 215 | 22 | 203 | 4.65e-28 | 105 |
| Msa0932890 | MtrunA17_Chr2g0286171 | 35.648 | 216 | 128 | 6 | 1 | 215 | 3 | 208 | 6.42e-28 | 105 |
| Msa0932890 | MtrunA17_Chr8g0344041 | 35.789 | 190 | 113 | 4 | 28 | 215 | 27 | 209 | 8.40e-28 | 105 |
| Msa0932890 | MtrunA17_Chr2g0321601 | 34.884 | 215 | 121 | 6 | 2 | 215 | 7 | 203 | 1.36e-27 | 104 |
| Msa0932890 | MtrunA17_Chr4g0026191 | 40.559 | 143 | 80 | 3 | 74 | 215 | 67 | 205 | 1.38e-27 | 104 |
| Msa0932890 | MtrunA17_Chr4g0026201 | 40.559 | 143 | 80 | 3 | 74 | 215 | 67 | 205 | 1.57e-27 | 103 |
| Msa0932890 | MtrunA17_Chr5g0411961 | 34.673 | 199 | 122 | 4 | 18 | 215 | 14 | 205 | 2.33e-27 | 103 |
| Msa0932890 | MtrunA17_Chr2g0302541 | 36.649 | 191 | 113 | 4 | 26 | 215 | 22 | 205 | 3.92e-27 | 103 |
| Msa0932890 | MtrunA17_Chr4g0012651 | 37.173 | 191 | 112 | 4 | 26 | 215 | 22 | 205 | 4.46e-27 | 102 |
| Msa0932890 | MtrunA17_Chr7g0217811 | 36.649 | 191 | 113 | 4 | 26 | 215 | 22 | 205 | 7.11e-27 | 102 |
| Msa0932890 | MtrunA17_Chr3g0115141 | 37.037 | 189 | 109 | 5 | 28 | 215 | 27 | 206 | 4.02e-26 | 100 |
| Msa0932890 | MtrunA17_Chr2g0292881 | 70.175 | 57 | 17 | 0 | 93 | 149 | 1 | 57 | 1.19e-22 | 87.0 |
| Msa0932890 | MtrunA17_Chr3g0084551 | 31.472 | 197 | 119 | 7 | 18 | 212 | 14 | 196 | 4.46e-16 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0932890 | AT5G39120.1 | 63.470 | 219 | 76 | 3 | 1 | 215 | 1 | 219 | 4.09e-92 | 270 |
| Msa0932890 | AT5G39150.1 | 63.014 | 219 | 77 | 3 | 1 | 215 | 1 | 219 | 3.34e-91 | 267 |
| Msa0932890 | AT5G39180.1 | 63.014 | 219 | 77 | 3 | 1 | 215 | 1 | 219 | 4.69e-91 | 267 |
| Msa0932890 | AT5G39110.1 | 63.721 | 215 | 75 | 2 | 4 | 215 | 6 | 220 | 4.85e-91 | 267 |
| Msa0932890 | AT5G38940.1 | 66.837 | 196 | 63 | 1 | 22 | 215 | 26 | 221 | 8.90e-90 | 263 |
| Msa0932890 | AT5G38940.2 | 66.837 | 196 | 63 | 1 | 22 | 215 | 50 | 245 | 1.66e-89 | 264 |
| Msa0932890 | AT5G38930.1 | 67.172 | 198 | 63 | 1 | 20 | 215 | 24 | 221 | 5.90e-89 | 261 |
| Msa0932890 | AT5G39130.1 | 66.332 | 199 | 63 | 3 | 20 | 215 | 22 | 219 | 1.51e-88 | 260 |
| Msa0932890 | AT5G39160.1 | 66.332 | 199 | 63 | 3 | 20 | 215 | 22 | 219 | 3.24e-88 | 259 |
| Msa0932890 | AT5G39190.1 | 66.332 | 199 | 63 | 3 | 20 | 215 | 22 | 219 | 5.37e-88 | 259 |
| Msa0932890 | AT3G05950.1 | 65.550 | 209 | 67 | 4 | 11 | 215 | 14 | 221 | 1.49e-87 | 258 |
| Msa0932890 | AT5G38910.1 | 63.470 | 219 | 76 | 4 | 1 | 215 | 1 | 219 | 3.40e-87 | 257 |
| Msa0932890 | AT5G38960.1 | 64.179 | 201 | 69 | 2 | 18 | 215 | 22 | 222 | 1.66e-86 | 255 |
| Msa0932890 | AT4G14630.1 | 64.322 | 199 | 68 | 2 | 20 | 215 | 24 | 222 | 8.04e-85 | 251 |
| Msa0932890 | AT5G39160.3 | 63.819 | 199 | 64 | 3 | 20 | 215 | 22 | 215 | 1.91e-83 | 247 |
| Msa0932890 | AT3G04200.1 | 61.111 | 216 | 77 | 4 | 3 | 215 | 11 | 222 | 6.40e-81 | 241 |
| Msa0932890 | AT5G39190.2 | 58.621 | 203 | 62 | 2 | 14 | 215 | 16 | 197 | 1.36e-74 | 224 |
| Msa0932890 | AT3G04150.1 | 56.306 | 222 | 89 | 5 | 1 | 215 | 1 | 221 | 1.91e-74 | 225 |
| Msa0932890 | AT5G39160.2 | 59.113 | 203 | 61 | 3 | 14 | 215 | 16 | 197 | 3.22e-74 | 223 |
| Msa0932890 | AT3G04190.1 | 57.843 | 204 | 82 | 3 | 15 | 215 | 19 | 221 | 3.17e-73 | 221 |
| Msa0932890 | AT3G04150.2 | 52.991 | 234 | 91 | 5 | 1 | 215 | 1 | 234 | 2.74e-72 | 220 |
| Msa0932890 | AT3G04180.1 | 55.882 | 204 | 86 | 3 | 15 | 215 | 19 | 221 | 2.35e-70 | 214 |
| Msa0932890 | AT3G04170.1 | 55.981 | 209 | 84 | 5 | 11 | 215 | 14 | 218 | 2.22e-69 | 212 |
| Msa0932890 | AT5G38910.2 | 51.598 | 219 | 65 | 5 | 1 | 215 | 1 | 182 | 1.19e-60 | 188 |
| Msa0932890 | AT3G05930.1 | 46.364 | 220 | 108 | 5 | 1 | 215 | 1 | 215 | 2.64e-57 | 181 |
| Msa0932890 | AT1G02335.1 | 44.907 | 216 | 112 | 4 | 2 | 215 | 5 | 215 | 3.10e-57 | 181 |
| Msa0932890 | AT1G09560.1 | 49.239 | 197 | 94 | 3 | 22 | 216 | 24 | 216 | 5.90e-56 | 177 |
| Msa0932890 | AT3G62020.1 | 46.226 | 212 | 107 | 4 | 7 | 215 | 8 | 215 | 1.17e-54 | 174 |
| Msa0932890 | AT5G26700.1 | 46.890 | 209 | 92 | 6 | 11 | 215 | 16 | 209 | 4.32e-54 | 172 |
| Msa0932890 | AT1G18970.1 | 45.540 | 213 | 108 | 4 | 7 | 217 | 14 | 220 | 1.22e-52 | 169 |
| Msa0932890 | AT1G18980.1 | 46.396 | 222 | 104 | 6 | 3 | 217 | 7 | 220 | 5.44e-52 | 167 |
| Msa0932890 | AT1G10460.1 | 43.216 | 199 | 106 | 5 | 22 | 215 | 19 | 215 | 2.06e-48 | 158 |
| Msa0932890 | AT3G62020.2 | 47.778 | 180 | 89 | 3 | 39 | 215 | 9 | 186 | 5.95e-48 | 156 |
| Msa0932890 | AT3G10080.1 | 40.796 | 201 | 111 | 4 | 19 | 215 | 23 | 219 | 2.35e-42 | 143 |
| Msa0932890 | AT3G10080.2 | 40.594 | 202 | 112 | 4 | 18 | 215 | 93 | 290 | 1.35e-41 | 143 |
| Msa0932890 | AT5G20630.1 | 41.885 | 191 | 99 | 4 | 1 | 189 | 3 | 183 | 2.39e-39 | 135 |
| Msa0932890 | AT5G61750.1 | 42.703 | 185 | 96 | 4 | 5 | 187 | 7 | 183 | 2.00e-38 | 132 |
| Msa0932890 | AT1G74820.1 | 38.342 | 193 | 111 | 4 | 25 | 215 | 39 | 225 | 1.10e-33 | 120 |
| Msa0932890 | AT1G72610.1 | 38.095 | 189 | 109 | 4 | 26 | 212 | 19 | 201 | 3.00e-31 | 114 |
| Msa0932890 | AT5G38950.1 | 64.062 | 64 | 23 | 0 | 144 | 207 | 2 | 65 | 1.68e-20 | 83.2 |
Find 46 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTATTGCTAATGCTGTATT+TGG | 0.057045 | 6_3:+1309606 | Msa0932890:CDS |
| CTTGTTTGTGACAGCCTTCT+TGG | 0.145591 | 6_3:+1308912 | Msa0932890:CDS |
| GTAACCGTTAACGAGATATT+AGG | 0.210042 | 6_3:+1309300 | Msa0932890:CDS |
| TAGTGATTACACCTGGATTT+TGG | 0.253401 | 6_3:-1309587 | Msa0932880:intron |
| CACTGAAATTCTTATAGTTT+TGG | 0.278641 | 6_3:+1309404 | Msa0932890:CDS |
| TTCACTTTCAATTGAATGTT+GGG | 0.325573 | 6_3:+1309529 | Msa0932890:CDS |
| GGAAATGCTCTCGCCATTGC+TGG | 0.341695 | 6_3:+1309555 | Msa0932890:CDS |
| AGTATACATACCACCATTCT+TGG | 0.356363 | 6_3:-1309004 | Msa0932880:intron |
| TCATTTGGTGTAGCAAGCTT+TGG | 0.358003 | 6_3:-1309216 | Msa0932880:intron |
| CTCGCGTTGACTTTGCATCT+AGG | 0.379629 | 6_3:+1309349 | Msa0932890:CDS |
| ATCACAAAAGTACTAAATAA+AGG | 0.392770 | 6_3:+1309477 | Msa0932890:CDS |
| TAACCGTTAACGAGATATTA+GGG | 0.393305 | 6_3:+1309301 | Msa0932890:CDS |
| TAACCCTAATATCTCGTTAA+CGG | 0.394123 | 6_3:-1309304 | Msa0932880:intron |
| CCACTATGTTATTGTCCACT+TGG | 0.415021 | 6_3:-1309671 | Msa0932880:intron |
| TGAAAGTGAATGAGGCCAAT+TGG | 0.419001 | 6_3:-1309516 | Msa0932880:intron |
| ATTCACTTTCAATTGAATGT+TGG | 0.434824 | 6_3:+1309528 | Msa0932890:CDS |
| TCGCGTTGACTTTGCATCTA+GGG | 0.434930 | 6_3:+1309350 | Msa0932890:CDS |
| TTTCAATTGAATGTTGGGTA+TGG | 0.435827 | 6_3:+1309534 | Msa0932890:CDS |
| ACAAAAGTCTTGTAGAGGGC+TGG | 0.457530 | 6_3:-1308965 | Msa0932880:intron |
| CTATTGCTAATGCTGTATTT+GGG | 0.459960 | 6_3:+1309607 | Msa0932890:CDS |
| GATGTGTTTGTGTTTCCAAT+TGG | 0.461413 | 6_3:+1309501 | Msa0932890:CDS |
| ATAAGAATTTCAGTGGCTCT+AGG | 0.464256 | 6_3:-1309396 | Msa0932880:intron |
| ATTGTCCACTTGGAAAGCTT+TGG | 0.467417 | 6_3:-1309661 | Msa0932880:intron |
| CAAAAGTCTTGTAGAGGGCT+GGG | 0.476086 | 6_3:-1308964 | Msa0932880:intron |
| TGGAGGGTACACTTTATGTC+GGG | 0.491331 | 6_3:+1309424 | Msa0932890:CDS |
| TTGGAGGGTACACTTTATGT+CGG | 0.515920 | 6_3:+1309423 | Msa0932890:CDS |
| TTGTAGAGGGCTGGGATCAA+AGG | 0.523699 | 6_3:-1308956 | Msa0932880:intron |
| CGCGTTGACTTTGCATCTAG+GGG | 0.532914 | 6_3:+1309351 | Msa0932890:CDS |
| TAAGAATTTCAGTGGCTCTA+GGG | 0.535161 | 6_3:-1309395 | Msa0932880:intron |
| GGACTTAGCAGCCAAAATCC+AGG | 0.549743 | 6_3:+1309576 | Msa0932890:CDS |
| GTGGCTCTAGGGTGAGTATG+TGG | 0.550279 | 6_3:-1309384 | Msa0932880:intron |
| CATTCAATTGAAAGTGAATG+AGG | 0.551568 | 6_3:-1309524 | Msa0932880:intron |
| ACAAGATGCTACAGCCAAGA+AGG | 0.559022 | 6_3:-1308926 | Msa0932880:intron |
| TTGGCTGCTAAGTCCAGCAA+TGG | 0.600072 | 6_3:-1309568 | Msa0932880:intron |
| ATATTAGGGTTAAACACACT+TGG | 0.603049 | 6_3:+1309315 | Msa0932890:CDS |
| GCCACACAAAAGTCTTGTAG+AGG | 0.603085 | 6_3:-1308970 | Msa0932880:intron |
| CCAAGTGGACAATAACATAG+TGG | 0.613774 | 6_3:+1309671 | Msa0932890:CDS |
| TTAGCAATAGTGATTACACC+TGG | 0.624375 | 6_3:-1309594 | Msa0932880:intron |
| ATCAATGACACCAAGAATGG+TGG | 0.627435 | 6_3:+1308994 | Msa0932890:CDS |
| CAAAACTATAAGAATTTCAG+TGG | 0.632768 | 6_3:-1309403 | Msa0932880:intron |
| GCTATCAATGACACCAAGAA+TGG | 0.633041 | 6_3:+1308991 | Msa0932890:CDS |
| AGGGCTGGGATCAAAGGCAA+AGG | 0.641928 | 6_3:-1308950 | Msa0932880:intron |
| CCACACAAAAGTCTTGTAGA+GGG | 0.655758 | 6_3:-1308969 | Msa0932880:intron |
| GGAAACACGTCAAATCCACT+TGG | 0.662851 | 6_3:+1309261 | Msa0932890:CDS |
| TCTCACCAAAGCTTTCCAAG+TGG | 0.665947 | 6_3:+1309656 | Msa0932890:CDS |
| GCTCTAGGGTGAGTATGTGG+AGG | 0.673911 | 6_3:-1309381 | Msa0932880:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGAAATCATTAAAAGATA+TGG | - | chr6_3:1309042-1309061 | Msa0932880:intron | 15.0% |
| !!! | TTTATTTACTTTTAGTTTTC+TGG | + | chr6_3:1309059-1309078 | Msa0932890:intron | 15.0% |
| !! | AAAGAAATCATTAAAAGATA+TGG | - | chr6_3:1309042-1309061 | Msa0932880:intron | 15.0% |
| !!! | TTTATTTACTTTTAGTTTTC+TGG | + | chr6_3:1309059-1309078 | Msa0932890:intron | 15.0% |
| !!! | ATCACAAAAGTACTAAATAA+AGG | + | chr6_3:1309477-1309496 | Msa0932890:CDS | 20.0% |
| !!! | ACAATCTTCAAAAACAATTT+TGG | + | chr6_3:1309694-1309713 | Msa0932890:CDS | 20.0% |
| !!! | CAATCTTCAAAAACAATTTT+GGG | + | chr6_3:1309695-1309714 | Msa0932890:CDS | 20.0% |
| !!! | ATCACAAAAGTACTAAATAA+AGG | + | chr6_3:1309477-1309496 | Msa0932890:CDS | 20.0% |
| !!! | ACAATCTTCAAAAACAATTT+TGG | + | chr6_3:1309694-1309713 | Msa0932890:CDS | 20.0% |
| !!! | CAATCTTCAAAAACAATTTT+GGG | + | chr6_3:1309695-1309714 | Msa0932890:CDS | 20.0% |
| ! | ACTGAGAAAAAGAAATCATT+TGG | - | chr6_3:1309234-1309253 | Msa0932880:intron | 25.0% |
| !! | TTCTTTTTCTCAGTTAAAGA+AGG | + | chr6_3:1309240-1309259 | Msa0932890:CDS | 25.0% |
| ! | CAAAACTATAAGAATTTCAG+TGG | - | chr6_3:1309406-1309425 | Msa0932880:intron | 25.0% |
| !! | CACTGAAATTCTTATAGTTT+TGG | + | chr6_3:1309404-1309423 | Msa0932890:CDS | 25.0% |
| !!! | TGAAATTCTTATAGTTTTGG+AGG | + | chr6_3:1309407-1309426 | Msa0932890:CDS | 25.0% |
| !!! | GAAATTCTTATAGTTTTGGA+GGG | + | chr6_3:1309408-1309427 | Msa0932890:CDS | 25.0% |
| ! | ATTCACTTTCAATTGAATGT+TGG | + | chr6_3:1309528-1309547 | Msa0932890:CDS | 25.0% |
| ! | TTCACTTTCAATTGAATGTT+GGG | + | chr6_3:1309529-1309548 | Msa0932890:CDS | 25.0% |
| !!! | AGAACTTCTGAAGAAATTTT+TGG | - | chr6_3:1309639-1309658 | Msa0932880:intron | 25.0% |
| ! | ACTGAGAAAAAGAAATCATT+TGG | - | chr6_3:1309234-1309253 | Msa0932880:intron | 25.0% |
| !! | TTCTTTTTCTCAGTTAAAGA+AGG | + | chr6_3:1309240-1309259 | Msa0932890:CDS | 25.0% |
| ! | CAAAACTATAAGAATTTCAG+TGG | - | chr6_3:1309406-1309425 | Msa0932880:intron | 25.0% |
| !! | CACTGAAATTCTTATAGTTT+TGG | + | chr6_3:1309404-1309423 | Msa0932890:CDS | 25.0% |
| !!! | TGAAATTCTTATAGTTTTGG+AGG | + | chr6_3:1309407-1309426 | Msa0932890:CDS | 25.0% |
| !!! | GAAATTCTTATAGTTTTGGA+GGG | + | chr6_3:1309408-1309427 | Msa0932890:CDS | 25.0% |
| ! | ATTCACTTTCAATTGAATGT+TGG | + | chr6_3:1309528-1309547 | Msa0932890:CDS | 25.0% |
| ! | TTCACTTTCAATTGAATGTT+GGG | + | chr6_3:1309529-1309548 | Msa0932890:CDS | 25.0% |
| !!! | AGAACTTCTGAAGAAATTTT+TGG | - | chr6_3:1309639-1309658 | Msa0932880:intron | 25.0% |
| ! | TGTTTTGCAGTATTTGTGAA+TGG | + | chr6_3:1309177-1309196 | Msa0932890:intron | 30.0% |
| ! | TGTGAATGGAAAATTTTGCA+AGG | + | chr6_3:1309191-1309210 | Msa0932890:CDS | 30.0% |
| TAACCGTTAACGAGATATTA+GGG | + | chr6_3:1309301-1309320 | Msa0932890:CDS | 30.0% | |
| TAACCCTAATATCTCGTTAA+CGG | - | chr6_3:1309307-1309326 | Msa0932880:intron | 30.0% | |
| ATATTAGGGTTAAACACACT+TGG | + | chr6_3:1309315-1309334 | Msa0932890:CDS | 30.0% | |
| ! | TTAGTACTTTTGTGATGAGA+CGG | - | chr6_3:1309473-1309492 | Msa0932880:intron | 30.0% |
| CATTCAATTGAAAGTGAATG+AGG | - | chr6_3:1309527-1309546 | Msa0932880:intron | 30.0% | |
| TTTCAATTGAATGTTGGGTA+TGG | + | chr6_3:1309534-1309553 | Msa0932890:CDS | 30.0% | |
| ACTATTGCTAATGCTGTATT+TGG | + | chr6_3:1309606-1309625 | Msa0932890:CDS | 30.0% | |
| CTATTGCTAATGCTGTATTT+GGG | + | chr6_3:1309607-1309626 | Msa0932890:CDS | 30.0% | |
| ! | TCTTCAAAAACAATTTTGGG+TGG | + | chr6_3:1309698-1309717 | Msa0932890:CDS | 30.0% |
| ! | TGTTTTGCAGTATTTGTGAA+TGG | + | chr6_3:1309177-1309196 | Msa0932890:intron | 30.0% |
| ! | TGTGAATGGAAAATTTTGCA+AGG | + | chr6_3:1309191-1309210 | Msa0932890:CDS | 30.0% |
| TAACCGTTAACGAGATATTA+GGG | + | chr6_3:1309301-1309320 | Msa0932890:CDS | 30.0% | |
| TAACCCTAATATCTCGTTAA+CGG | - | chr6_3:1309307-1309326 | Msa0932880:intron | 30.0% | |
| ATATTAGGGTTAAACACACT+TGG | + | chr6_3:1309315-1309334 | Msa0932890:CDS | 30.0% | |
| ! | TTAGTACTTTTGTGATGAGA+CGG | - | chr6_3:1309473-1309492 | Msa0932880:intron | 30.0% |
| CATTCAATTGAAAGTGAATG+AGG | - | chr6_3:1309527-1309546 | Msa0932880:intron | 30.0% | |
| TTTCAATTGAATGTTGGGTA+TGG | + | chr6_3:1309534-1309553 | Msa0932890:CDS | 30.0% | |
| ACTATTGCTAATGCTGTATT+TGG | + | chr6_3:1309606-1309625 | Msa0932890:CDS | 30.0% | |
| CTATTGCTAATGCTGTATTT+GGG | + | chr6_3:1309607-1309626 | Msa0932890:CDS | 30.0% | |
| ! | TCTTCAAAAACAATTTTGGG+TGG | + | chr6_3:1309698-1309717 | Msa0932890:CDS | 30.0% |
| AGTATACATACCACCATTCT+TGG | - | chr6_3:1309007-1309026 | Msa0932880:intron | 35.0% | |
| GTAACCGTTAACGAGATATT+AGG | + | chr6_3:1309300-1309319 | Msa0932890:CDS | 35.0% | |
| ! | TAAGAATTTCAGTGGCTCTA+GGG | - | chr6_3:1309398-1309417 | Msa0932880:intron | 35.0% |
| ATAAGAATTTCAGTGGCTCT+AGG | - | chr6_3:1309399-1309418 | Msa0932880:intron | 35.0% | |
| GATGTGTTTGTGTTTCCAAT+TGG | + | chr6_3:1309501-1309520 | Msa0932890:CDS | 35.0% | |
| ! | TAGTGATTACACCTGGATTT+TGG | - | chr6_3:1309590-1309609 | Msa0932880:intron | 35.0% |
| TTAGCAATAGTGATTACACC+TGG | - | chr6_3:1309597-1309616 | Msa0932880:intron | 35.0% | |
| AGTATACATACCACCATTCT+TGG | - | chr6_3:1309007-1309026 | Msa0932880:intron | 35.0% | |
| GTAACCGTTAACGAGATATT+AGG | + | chr6_3:1309300-1309319 | Msa0932890:CDS | 35.0% | |
| ! | TAAGAATTTCAGTGGCTCTA+GGG | - | chr6_3:1309398-1309417 | Msa0932880:intron | 35.0% |
| ATAAGAATTTCAGTGGCTCT+AGG | - | chr6_3:1309399-1309418 | Msa0932880:intron | 35.0% | |
| GATGTGTTTGTGTTTCCAAT+TGG | + | chr6_3:1309501-1309520 | Msa0932890:CDS | 35.0% | |
| ! | TAGTGATTACACCTGGATTT+TGG | - | chr6_3:1309590-1309609 | Msa0932880:intron | 35.0% |
| TTAGCAATAGTGATTACACC+TGG | - | chr6_3:1309597-1309616 | Msa0932880:intron | 35.0% | |
| ! | CCACACAAAAGTCTTGTAGA+GGG | - | chr6_3:1308972-1308991 | Msa0932880:intron | 40.0% |
| GCTATCAATGACACCAAGAA+TGG | + | chr6_3:1308991-1309010 | Msa0932890:CDS | 40.0% | |
| ATCAATGACACCAAGAATGG+TGG | + | chr6_3:1308994-1309013 | Msa0932890:CDS | 40.0% | |
| !! | TCATTTGGTGTAGCAAGCTT+TGG | - | chr6_3:1309219-1309238 | Msa0932880:intron | 40.0% |
| !!! | TGTGTCACTTTTGAACCAAG+TGG | - | chr6_3:1309279-1309298 | Msa0932880:intron | 40.0% |
| ! | TTGGAGGGTACACTTTATGT+CGG | + | chr6_3:1309423-1309442 | Msa0932890:CDS | 40.0% |
| ! | TTTGTGATGAGACGGTTTTC+TGG | - | chr6_3:1309465-1309484 | Msa0932880:intron | 40.0% |
| TGAAAGTGAATGAGGCCAAT+TGG | - | chr6_3:1309519-1309538 | Msa0932880:intron | 40.0% | |
| ATTGTCCACTTGGAAAGCTT+TGG | - | chr6_3:1309664-1309683 | Msa0932880:intron | 40.0% | |
| CCACTATGTTATTGTCCACT+TGG | - | chr6_3:1309674-1309693 | Msa0932880:intron | 40.0% | |
| CCAAGTGGACAATAACATAG+TGG | + | chr6_3:1309671-1309690 | Msa0932890:CDS | 40.0% | |
| ! | CCACACAAAAGTCTTGTAGA+GGG | - | chr6_3:1308972-1308991 | Msa0932880:intron | 40.0% |
| GCTATCAATGACACCAAGAA+TGG | + | chr6_3:1308991-1309010 | Msa0932890:CDS | 40.0% | |
| ATCAATGACACCAAGAATGG+TGG | + | chr6_3:1308994-1309013 | Msa0932890:CDS | 40.0% | |
| !! | TCATTTGGTGTAGCAAGCTT+TGG | - | chr6_3:1309219-1309238 | Msa0932880:intron | 40.0% |
| !!! | TGTGTCACTTTTGAACCAAG+TGG | - | chr6_3:1309279-1309298 | Msa0932880:intron | 40.0% |
| ! | TTGGAGGGTACACTTTATGT+CGG | + | chr6_3:1309423-1309442 | Msa0932890:CDS | 40.0% |
| ! | TTTGTGATGAGACGGTTTTC+TGG | - | chr6_3:1309465-1309484 | Msa0932880:intron | 40.0% |
| TGAAAGTGAATGAGGCCAAT+TGG | - | chr6_3:1309519-1309538 | Msa0932880:intron | 40.0% | |
| ATTGTCCACTTGGAAAGCTT+TGG | - | chr6_3:1309664-1309683 | Msa0932880:intron | 40.0% | |
| CCACTATGTTATTGTCCACT+TGG | - | chr6_3:1309674-1309693 | Msa0932880:intron | 40.0% | |
| CCAAGTGGACAATAACATAG+TGG | + | chr6_3:1309671-1309690 | Msa0932890:CDS | 40.0% | |
| CTTGTTTGTGACAGCCTTCT+TGG | + | chr6_3:1308912-1308931 | Msa0932890:CDS | 45.0% | |
| ACAAGATGCTACAGCCAAGA+AGG | - | chr6_3:1308929-1308948 | Msa0932880:intron | 45.0% | |
| ! | CAAAAGTCTTGTAGAGGGCT+GGG | - | chr6_3:1308967-1308986 | Msa0932880:intron | 45.0% |
| ! | ACAAAAGTCTTGTAGAGGGC+TGG | - | chr6_3:1308968-1308987 | Msa0932880:intron | 45.0% |
| ! | CCCTCTACAAGACTTTTGTG+TGG | + | chr6_3:1308969-1308988 | Msa0932890:CDS | 45.0% |
| ! | GCCACACAAAAGTCTTGTAG+AGG | - | chr6_3:1308973-1308992 | Msa0932880:intron | 45.0% |
| GGAAACACGTCAAATCCACT+TGG | + | chr6_3:1309261-1309280 | Msa0932890:CDS | 45.0% | |
| !! | TCGCGTTGACTTTGCATCTA+GGG | + | chr6_3:1309350-1309369 | Msa0932890:CDS | 45.0% |
| ! | TGGAGGGTACACTTTATGTC+GGG | + | chr6_3:1309424-1309443 | Msa0932890:CDS | 45.0% |
| TCTCACCAAAGCTTTCCAAG+TGG | + | chr6_3:1309656-1309675 | Msa0932890:CDS | 45.0% | |
| CTTGTTTGTGACAGCCTTCT+TGG | + | chr6_3:1308912-1308931 | Msa0932890:CDS | 45.0% | |
| ACAAGATGCTACAGCCAAGA+AGG | - | chr6_3:1308929-1308948 | Msa0932880:intron | 45.0% | |
| ! | CAAAAGTCTTGTAGAGGGCT+GGG | - | chr6_3:1308967-1308986 | Msa0932880:intron | 45.0% |
| ! | ACAAAAGTCTTGTAGAGGGC+TGG | - | chr6_3:1308968-1308987 | Msa0932880:intron | 45.0% |
| ! | CCCTCTACAAGACTTTTGTG+TGG | + | chr6_3:1308969-1308988 | Msa0932890:CDS | 45.0% |
| ! | GCCACACAAAAGTCTTGTAG+AGG | - | chr6_3:1308973-1308992 | Msa0932880:intron | 45.0% |
| GGAAACACGTCAAATCCACT+TGG | + | chr6_3:1309261-1309280 | Msa0932890:CDS | 45.0% | |
| !! | TCGCGTTGACTTTGCATCTA+GGG | + | chr6_3:1309350-1309369 | Msa0932890:CDS | 45.0% |
| ! | TGGAGGGTACACTTTATGTC+GGG | + | chr6_3:1309424-1309443 | Msa0932890:CDS | 45.0% |
| TCTCACCAAAGCTTTCCAAG+TGG | + | chr6_3:1309656-1309675 | Msa0932890:CDS | 45.0% | |
| TTGTAGAGGGCTGGGATCAA+AGG | - | chr6_3:1308959-1308978 | Msa0932880:intron | 50.0% | |
| !! | CTCGCGTTGACTTTGCATCT+AGG | + | chr6_3:1309349-1309368 | Msa0932890:CDS | 50.0% |
| !! | CGCGTTGACTTTGCATCTAG+GGG | + | chr6_3:1309351-1309370 | Msa0932890:CDS | 50.0% |
| TTGGCTGCTAAGTCCAGCAA+TGG | - | chr6_3:1309571-1309590 | Msa0932880:intron | 50.0% | |
| GGACTTAGCAGCCAAAATCC+AGG | + | chr6_3:1309576-1309595 | Msa0932890:CDS | 50.0% | |
| TTGTAGAGGGCTGGGATCAA+AGG | - | chr6_3:1308959-1308978 | Msa0932880:intron | 50.0% | |
| !! | CTCGCGTTGACTTTGCATCT+AGG | + | chr6_3:1309349-1309368 | Msa0932890:CDS | 50.0% |
| !! | CGCGTTGACTTTGCATCTAG+GGG | + | chr6_3:1309351-1309370 | Msa0932890:CDS | 50.0% |
| TTGGCTGCTAAGTCCAGCAA+TGG | - | chr6_3:1309571-1309590 | Msa0932880:intron | 50.0% | |
| GGACTTAGCAGCCAAAATCC+AGG | + | chr6_3:1309576-1309595 | Msa0932890:CDS | 50.0% | |
| AGGGCTGGGATCAAAGGCAA+AGG | - | chr6_3:1308953-1308972 | Msa0932880:intron | 55.0% | |
| !! | GCTCTAGGGTGAGTATGTGG+AGG | - | chr6_3:1309384-1309403 | Msa0932880:intron | 55.0% |
| !! | GTGGCTCTAGGGTGAGTATG+TGG | - | chr6_3:1309387-1309406 | Msa0932880:intron | 55.0% |
| GGAAATGCTCTCGCCATTGC+TGG | + | chr6_3:1309555-1309574 | Msa0932890:CDS | 55.0% | |
| AGGGCTGGGATCAAAGGCAA+AGG | - | chr6_3:1308953-1308972 | Msa0932880:intron | 55.0% | |
| !! | GCTCTAGGGTGAGTATGTGG+AGG | - | chr6_3:1309384-1309403 | Msa0932880:intron | 55.0% |
| !! | GTGGCTCTAGGGTGAGTATG+TGG | - | chr6_3:1309387-1309406 | Msa0932880:intron | 55.0% |
| GGAAATGCTCTCGCCATTGC+TGG | + | chr6_3:1309555-1309574 | Msa0932890:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 1308898 | 1309731 | 1308898 | ID=Msa0932890;Name=Msa0932890 |
| chr6_3 | mRNA | 1308898 | 1309731 | 1308898 | ID=Msa0932890-mRNA-1;Parent=Msa0932890;Name=Msa0932890-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|220 |
| chr6_3 | exon | 1308898 | 1309015 | 1308898 | ID=Msa0932890-mRNA-1:exon:475;Parent=Msa0932890-mRNA-1 |
| chr6_3 | exon | 1309187 | 1309731 | 1309187 | ID=Msa0932890-mRNA-1:exon:476;Parent=Msa0932890-mRNA-1 |
| chr6_3 | CDS | 1308898 | 1309015 | 1308898 | ID=Msa0932890-mRNA-1:cds;Parent=Msa0932890-mRNA-1 |
| chr6_3 | CDS | 1309187 | 1309731 | 1309187 | ID=Msa0932890-mRNA-1:cds;Parent=Msa0932890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
