Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1010310 | XP_003621633.1 | 99.107 | 112 | 1 | 0 | 1 | 112 | 1 | 112 | 2.58e-75 | 228 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1010310 | sp|O49884|RL30_LUPLU | 99.107 | 112 | 1 | 0 | 1 | 112 | 1 | 112 | 5.57e-78 | 228 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1010310 | G7KSW7 | 99.107 | 112 | 1 | 0 | 1 | 112 | 1 | 112 | 1.23e-75 | 228 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002750 | Msa1010310 | 0.839283 | 1.738130e-57 | -8.615850e-47 |
| Msa0002790 | Msa1010310 | 0.833248 | 5.947783e-56 | -8.615850e-47 |
| Msa0032780 | Msa1010310 | 0.840099 | 1.065961e-57 | -8.615850e-47 |
| Msa0045730 | Msa1010310 | 0.814580 | 1.432944e-51 | -8.615850e-47 |
| Msa0086750 | Msa1010310 | 0.810672 | 1.025920e-50 | -8.615850e-47 |
| Msa0622750 | Msa1010310 | 0.838665 | 2.512967e-57 | -8.615850e-47 |
| Msa0698780 | Msa1010310 | 0.816267 | 6.040338e-52 | -8.615850e-47 |
| Msa0712610 | Msa1010310 | 0.815940 | 7.143806e-52 | -8.615850e-47 |
| Msa0745970 | Msa1010310 | 0.843516 | 1.335350e-58 | -8.615850e-47 |
| Msa0781080 | Msa1010310 | 0.836365 | 9.766173e-57 | -8.615850e-47 |
| Msa0827380 | Msa1010310 | 0.805665 | 1.196514e-49 | -8.615850e-47 |
| Msa0133540 | Msa1010310 | 0.839666 | 1.382337e-57 | -8.615850e-47 |
| Msa0146340 | Msa1010310 | 0.821900 | 3.156886e-53 | -8.615850e-47 |
| Msa0181490 | Msa1010310 | 0.839209 | 1.817007e-57 | -8.615850e-47 |
| Msa0192750 | Msa1010310 | 0.821954 | 3.067028e-53 | -8.615850e-47 |
| Msa0210330 | Msa1010310 | 0.804204 | 2.416213e-49 | -8.615850e-47 |
| Msa0219120 | Msa1010310 | 0.820516 | 6.581902e-53 | -8.615850e-47 |
| Msa0222730 | Msa1010310 | 0.813060 | 3.098461e-51 | -8.615850e-47 |
| Msa0229150 | Msa1010310 | 0.824415 | 8.171274e-54 | -8.615850e-47 |
| Msa0230490 | Msa1010310 | 0.837927 | 3.893909e-57 | -8.615850e-47 |
| Msa0481850 | Msa1010310 | 0.877974 | 4.085284e-69 | -8.615850e-47 |
| Msa1010310 | Msa1051880 | 0.825239 | 5.224245e-54 | -8.615850e-47 |
| Msa1010310 | Msa1078870 | 0.818318 | 2.086420e-52 | -8.615850e-47 |
| Msa1010310 | Msa1078980 | 0.816939 | 4.269374e-52 | -8.615850e-47 |
| Msa1010310 | Msa1080350 | 0.886339 | 3.727483e-72 | -8.615850e-47 |
| Msa1010310 | Msa1088490 | 0.802848 | 4.616459e-49 | -8.615850e-47 |
| Msa1010310 | Msa1125860 | 0.893002 | 9.428009e-75 | -8.615850e-47 |
| Msa1010310 | Msa1126060 | 0.894685 | 1.953453e-75 | -8.615850e-47 |
| Msa1010310 | Msa1169180 | 0.804084 | 2.559859e-49 | -8.615850e-47 |
| Msa1010310 | Msa1215820 | 0.842351 | 2.727044e-58 | -8.615850e-47 |
| Msa1010310 | Msa1256840 | 0.835762 | 1.389505e-56 | -8.615850e-47 |
| Msa1010310 | Msa1273340 | 0.800520 | 1.387040e-48 | -8.615850e-47 |
| Msa1010310 | Msa1299590 | 0.809343 | 1.982693e-50 | -8.615850e-47 |
| Msa1010310 | Msa1311400 | 0.805452 | 1.326089e-49 | -8.615850e-47 |
| Msa1010310 | Msa1338190 | 0.813437 | 2.561331e-51 | -8.615850e-47 |
| Msa1010310 | Msa1356790 | 0.825454 | 4.645805e-54 | -8.615850e-47 |
| Msa1010310 | Msa1362210 | 0.811488 | 6.827109e-51 | -8.615850e-47 |
| Msa1010310 | Msa1362790 | 0.840337 | 9.238127e-58 | -8.615850e-47 |
| Msa1010310 | Msa1366180 | 0.806280 | 8.879669e-50 | -8.615850e-47 |
| Msa1010310 | Msa1399530 | 0.805672 | 1.192151e-49 | -8.615850e-47 |
| Msa1010310 | Msa1406080 | 0.816502 | 5.350070e-52 | -8.615850e-47 |
| Msa1010310 | Msa1426120 | 0.826090 | 3.282073e-54 | -8.615850e-47 |
| Msa1010310 | Msa1456050 | 0.808588 | 2.877330e-50 | -8.615850e-47 |
| Msa0250820 | Msa1010310 | 0.806165 | 9.391756e-50 | -8.615850e-47 |
| Msa0258850 | Msa1010310 | 0.835248 | 1.874166e-56 | -8.615850e-47 |
| Msa0264010 | Msa1010310 | 0.820779 | 5.726387e-53 | -8.615850e-47 |
| Msa0289580 | Msa1010310 | 0.847341 | 1.229387e-59 | -8.615850e-47 |
| Msa0289610 | Msa1010310 | 0.840816 | 6.923119e-58 | -8.615850e-47 |
| Msa0298200 | Msa1010310 | 0.824202 | 9.169066e-54 | -8.615850e-47 |
| Msa0306690 | Msa1010310 | 0.829661 | 4.543538e-55 | -8.615850e-47 |
| Msa0327300 | Msa1010310 | 0.823181 | 1.590376e-53 | -8.615850e-47 |
| Msa0327330 | Msa1010310 | 0.839398 | 1.623060e-57 | -8.615850e-47 |
| Msa0336010 | Msa1010310 | 0.866043 | 3.804231e-65 | -8.615850e-47 |
| Msa0337670 | Msa1010310 | 0.828118 | 1.073720e-54 | -8.615850e-47 |
| Msa0348830 | Msa1010310 | 0.816307 | 5.916272e-52 | -8.615850e-47 |
| Msa0483110 | Msa1010310 | 0.852531 | 4.341728e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1010310 | MtrunA17_Chr7g0221511 | 99.107 | 112 | 1 | 0 | 1 | 112 | 1 | 112 | 2.37e-79 | 228 |
| Msa1010310 | MtrunA17_Chr6g0457261 | 97.321 | 112 | 3 | 0 | 1 | 112 | 1 | 112 | 4.80e-78 | 225 |
| Msa1010310 | MtrunA17_Chr5g0441211 | 91.964 | 112 | 9 | 0 | 1 | 112 | 1 | 112 | 1.73e-74 | 216 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1010310 | AT1G36240.1 | 88.393 | 112 | 13 | 0 | 1 | 112 | 1 | 112 | 1.29e-71 | 209 |
| Msa1010310 | AT1G77940.1 | 86.607 | 112 | 15 | 0 | 1 | 112 | 1 | 112 | 1.01e-70 | 207 |
| Msa1010310 | AT3G18740.1 | 87.500 | 112 | 14 | 0 | 1 | 112 | 1 | 112 | 1.01e-70 | 207 |
Find 43 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGTACGATGCTTGTTATTT+TGG | 0.148620 | 7_1:+13281332 | Msa1010310:three_prime_UTR |
| GAACTAAATTGAATACTATT+GGG | 0.280624 | 7_1:-13281510 | None:intergenic |
| TGAACTAAATTGAATACTAT+TGG | 0.286488 | 7_1:-13281511 | None:intergenic |
| CTAACAACTGTCCTCCTTTG+AGG | 0.365472 | 7_1:+13279992 | Msa1010310:CDS |
| GACATCATCAAGACAGTTCC+TGG | 0.376255 | 7_1:+13281213 | Msa1010310:CDS |
| AAAATTCTAGTTGTAGACTA+TGG | 0.397229 | 7_1:+13281303 | Msa1010310:three_prime_UTR |
| TTTGCGGCCACCATTGTTGA+AGG | 0.420354 | 7_1:-13279461 | None:intergenic |
| TTACTCAATGCTCAATCAGC+TGG | 0.426863 | 7_1:-13281360 | None:intergenic |
| ACAACTTACTTCCATTGTAA+TGG | 0.429111 | 7_1:-13280062 | None:intergenic |
| GGCCACCATTGTTGAAGGTT+TGG | 0.449324 | 7_1:-13279456 | None:intergenic |
| CTCATGAGAGCATCAACAAC+AGG | 0.462326 | 7_1:+13279598 | Msa1010310:CDS |
| AATTACCTTTGGAACTCCTA+AGG | 0.463721 | 7_1:-13279680 | None:intergenic |
| TGCCTCAGCATTGTTGATCC+TGG | 0.466033 | 7_1:+13281098 | Msa1010310:CDS |
| GAAGCTTACGGTCTTCTTTG+CGG | 0.470686 | 7_1:-13279477 | None:intergenic |
| CTTTACGTTTACTGATCTCC+AGG | 0.475814 | 7_1:-13281231 | None:intergenic |
| ATTACCTTTGGAACTCCTAA+GGG | 0.478678 | 7_1:-13279679 | None:intergenic |
| AAAGTGTAAACACTGCCTCT+AGG | 0.491840 | 7_1:-13279394 | None:intergenic |
| AAGAGTGGAAAATATACCCT+TGG | 0.505811 | 7_1:+13279636 | Msa1010310:CDS |
| GTTGACCTTGGCACTGCTTG+TGG | 0.506943 | 7_1:+13281056 | Msa1010310:CDS |
| AAACCGTTCTCAAATCCCTT+AGG | 0.509696 | 7_1:+13279664 | Msa1010310:CDS |
| ACATAGAATTGAAAACATCA+TGG | 0.511457 | 7_1:-13281260 | None:intergenic |
| AACTAAATTGAATACTATTG+GGG | 0.518431 | 7_1:-13281509 | None:intergenic |
| TAGTATTCAATTTAGTTCAG+TGG | 0.522114 | 7_1:+13281515 | Msa1010310:three_prime_UTR |
| TATGCTATGTTGGCTAAGGT+TGG | 0.529938 | 7_1:+13280033 | Msa1010310:CDS |
| ATCATAGACAATGTTGACCT+TGG | 0.543023 | 7_1:+13281044 | Msa1010310:intron |
| CTCGCTCTTGTCATGAAGAG+TGG | 0.545906 | 7_1:+13279621 | Msa1010310:CDS |
| TACTCAATGCTCAATCAGCT+GGG | 0.550544 | 7_1:-13281359 | None:intergenic |
| AATTGAGTACTATGCTATGT+TGG | 0.552970 | 7_1:+13280023 | Msa1010310:CDS |
| AGAGTGGAAAATATACCCTT+GGG | 0.553555 | 7_1:+13279637 | Msa1010310:CDS |
| GTACTATGCTATGTTGGCTA+AGG | 0.556485 | 7_1:+13280029 | Msa1010310:CDS |
| CATAGAATTGAAAACATCAT+GGG | 0.585069 | 7_1:-13281259 | None:intergenic |
| ATTTCAGACTTCCTCAAAGG+AGG | 0.587118 | 7_1:-13280003 | None:intergenic |
| ACTCCTAAGGGATTTGAGAA+CGG | 0.591174 | 7_1:-13279667 | None:intergenic |
| TCACACCAAACCTTCAACAA+TGG | 0.594420 | 7_1:+13279451 | Msa1010310:exon |
| TCAATTTCAGACTTCCTCAA+AGG | 0.597003 | 7_1:-13280006 | None:intergenic |
| GTTGGAGTTCACCATTACAA+TGG | 0.600433 | 7_1:+13280051 | Msa1010310:CDS |
| AAATCCCTTAGGAGTTCCAA+AGG | 0.605938 | 7_1:+13279675 | Msa1010310:CDS |
| TAGTTGTAGACTATGGTGTA+CGG | 0.613110 | 7_1:+13281310 | Msa1010310:three_prime_UTR |
| CACCAAACCTTCAACAATGG+TGG | 0.615697 | 7_1:+13279454 | Msa1010310:exon |
| ACTTTCCACAAGCAGTGCCA+AGG | 0.620377 | 7_1:-13281061 | None:intergenic |
| TATTCAATTTAGTTCAGTGG+AGG | 0.626744 | 7_1:+13281518 | Msa1010310:three_prime_UTR |
| TACCAGGATCAACAATGCTG+AGG | 0.662178 | 7_1:-13281100 | None:intergenic |
| GATGCGCAGAGAAGAAAATG+CGG | 0.718290 | 7_1:-13279428 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTGATTTGATTATTTGT+AGG | + | chr7_1:13279952-13279971 | Msa1010310:intron | 15.0% |
| !!! | TTTTGATTTGATTATTTGTA+GGG | + | chr7_1:13279953-13279972 | Msa1010310:intron | 15.0% |
| !! | TACTGAAAAAATATTATACA+TGG | + | chr7_1:13280500-13280519 | Msa1010310:intron | 15.0% |
| !!! | AACTTTATTTTATAAGATTC+TGG | + | chr7_1:13280575-13280594 | Msa1010310:intron | 15.0% |
| !! | CAAATAACAAATAAAATTAG+AGG | - | chr7_1:13281175-13281194 | None:intergenic | 15.0% |
| !!! | CTCTAATTTTATTTGTTATT+TGG | + | chr7_1:13281173-13281192 | Msa1010310:intron | 15.0% |
| !!! | ATTTTGATTTGATTATTTGT+AGG | + | chr7_1:13279952-13279971 | Msa1010310:intron | 15.0% |
| !!! | TTTTGATTTGATTATTTGTA+GGG | + | chr7_1:13279953-13279972 | Msa1010310:intron | 15.0% |
| !! | TACTGAAAAAATATTATACA+TGG | + | chr7_1:13280500-13280519 | Msa1010310:intron | 15.0% |
| !!! | AACTTTATTTTATAAGATTC+TGG | + | chr7_1:13280575-13280594 | Msa1010310:intron | 15.0% |
| !! | CAAATAACAAATAAAATTAG+AGG | - | chr7_1:13281175-13281194 | None:intergenic | 15.0% |
| !!! | CTCTAATTTTATTTGTTATT+TGG | + | chr7_1:13281173-13281192 | Msa1010310:intron | 15.0% |
| !! | GGATAAAAAAAAATTACCTT+TGG | - | chr7_1:13279694-13279713 | None:intergenic | 20.0% |
| !! | ATACTTAATACACAACAAAA+TGG | - | chr7_1:13279715-13279734 | None:intergenic | 20.0% |
| !!! | TTTTGTTGTGTATTAAGTAT+TGG | + | chr7_1:13279715-13279734 | Msa1010310:intron | 20.0% |
| !!! | TTTGTTGTGTATTAAGTATT+GGG | + | chr7_1:13279716-13279735 | Msa1010310:intron | 20.0% |
| !!! | TTGATTGAATTAAGTGATTT+TGG | + | chr7_1:13279894-13279913 | Msa1010310:intron | 20.0% |
| !! | ATTGAAAAATTAATGACACA+GGG | - | chr7_1:13280107-13280126 | None:intergenic | 20.0% |
| !!! | AGCTAGTTATACTTTAAAAA+TGG | + | chr7_1:13280285-13280304 | Msa1010310:intron | 20.0% |
| !! | ATGTTTGGATTAATGATATA+GGG | - | chr7_1:13280342-13280361 | None:intergenic | 20.0% |
| !! | TATGTTTGGATTAATGATAT+AGG | - | chr7_1:13280343-13280362 | None:intergenic | 20.0% |
| !! | TTAATCCAAACATAATGTTA+TGG | + | chr7_1:13280349-13280368 | Msa1010310:intron | 20.0% |
| !! | TGTTGAAAGAATATTATACA+TGG | + | chr7_1:13280446-13280465 | Msa1010310:intron | 20.0% |
| !!! | AATATTTTTTCAGTATGACA+GGG | - | chr7_1:13280495-13280514 | None:intergenic | 20.0% |
| !!! | TAATATTTTTTCAGTATGAC+AGG | - | chr7_1:13280496-13280515 | None:intergenic | 20.0% |
| !!! | TTATTTGATGATTATGCATA+TGG | + | chr7_1:13280791-13280810 | Msa1010310:intron | 20.0% |
| !! | AACTAAATTGAATACTATTG+GGG | - | chr7_1:13281512-13281531 | None:intergenic | 20.0% |
| !! | GAACTAAATTGAATACTATT+GGG | - | chr7_1:13281513-13281532 | None:intergenic | 20.0% |
| !! | TGAACTAAATTGAATACTAT+TGG | - | chr7_1:13281514-13281533 | None:intergenic | 20.0% |
| !! | GGATAAAAAAAAATTACCTT+TGG | - | chr7_1:13279694-13279713 | None:intergenic | 20.0% |
| !! | ATACTTAATACACAACAAAA+TGG | - | chr7_1:13279715-13279734 | None:intergenic | 20.0% |
| !!! | TTTTGTTGTGTATTAAGTAT+TGG | + | chr7_1:13279715-13279734 | Msa1010310:intron | 20.0% |
| !!! | TTTGTTGTGTATTAAGTATT+GGG | + | chr7_1:13279716-13279735 | Msa1010310:intron | 20.0% |
| !!! | TTGATTGAATTAAGTGATTT+TGG | + | chr7_1:13279894-13279913 | Msa1010310:intron | 20.0% |
| !! | ATTGAAAAATTAATGACACA+GGG | - | chr7_1:13280107-13280126 | None:intergenic | 20.0% |
| !!! | AGCTAGTTATACTTTAAAAA+TGG | + | chr7_1:13280285-13280304 | Msa1010310:intron | 20.0% |
| !! | ATGTTTGGATTAATGATATA+GGG | - | chr7_1:13280342-13280361 | None:intergenic | 20.0% |
| !! | TATGTTTGGATTAATGATAT+AGG | - | chr7_1:13280343-13280362 | None:intergenic | 20.0% |
| !! | TTAATCCAAACATAATGTTA+TGG | + | chr7_1:13280349-13280368 | Msa1010310:intron | 20.0% |
| !! | TGTTGAAAGAATATTATACA+TGG | + | chr7_1:13280446-13280465 | Msa1010310:intron | 20.0% |
| !!! | AATATTTTTTCAGTATGACA+GGG | - | chr7_1:13280495-13280514 | None:intergenic | 20.0% |
| !!! | TAATATTTTTTCAGTATGAC+AGG | - | chr7_1:13280496-13280515 | None:intergenic | 20.0% |
| !!! | TTATTTGATGATTATGCATA+TGG | + | chr7_1:13280791-13280810 | Msa1010310:intron | 20.0% |
| !! | AACTAAATTGAATACTATTG+GGG | - | chr7_1:13281512-13281531 | None:intergenic | 20.0% |
| !! | GAACTAAATTGAATACTATT+GGG | - | chr7_1:13281513-13281532 | None:intergenic | 20.0% |
| !! | TGAACTAAATTGAATACTAT+TGG | - | chr7_1:13281514-13281533 | None:intergenic | 20.0% |
| ! | TATGATTTCGTTTCAGATTT+AGG | + | chr7_1:13279528-13279547 | Msa1010310:intron | 25.0% |
| ! | ATGATTTCGTTTCAGATTTA+GGG | + | chr7_1:13279529-13279548 | Msa1010310:intron | 25.0% |
| ! | AAATAAGTGATTAGTGAAAG+TGG | + | chr7_1:13279848-13279867 | Msa1010310:intron | 25.0% |
| ! | CATTGAAAAATTAATGACAC+AGG | - | chr7_1:13280108-13280127 | None:intergenic | 25.0% |
| ! | TAGAATGAAATGAAATGTAG+TGG | + | chr7_1:13280245-13280264 | Msa1010310:intron | 25.0% |
| !!! | TGAAATGTAGTGGATTAAAA+TGG | + | chr7_1:13280255-13280274 | Msa1010310:intron | 25.0% |
| !! | TACATTAACAGAAGCATATT+TGG | - | chr7_1:13280722-13280741 | None:intergenic | 25.0% |
| !!! | ATTTGTTATTTGGTGTTTTC+AGG | + | chr7_1:13281183-13281202 | Msa1010310:intron | 25.0% |
| ! | CATAGAATTGAAAACATCAT+GGG | - | chr7_1:13281262-13281281 | None:intergenic | 25.0% |
| ! | ACATAGAATTGAAAACATCA+TGG | - | chr7_1:13281263-13281282 | None:intergenic | 25.0% |
| !! | AAAATTCTAGTTGTAGACTA+TGG | + | chr7_1:13281303-13281322 | Msa1010310:three_prime_UTR | 25.0% |
| !! | TAGTATTCAATTTAGTTCAG+TGG | + | chr7_1:13281515-13281534 | Msa1010310:three_prime_UTR | 25.0% |
| ! | TATGATTTCGTTTCAGATTT+AGG | + | chr7_1:13279528-13279547 | Msa1010310:intron | 25.0% |
| ! | ATGATTTCGTTTCAGATTTA+GGG | + | chr7_1:13279529-13279548 | Msa1010310:intron | 25.0% |
| ! | AAATAAGTGATTAGTGAAAG+TGG | + | chr7_1:13279848-13279867 | Msa1010310:intron | 25.0% |
| ! | CATTGAAAAATTAATGACAC+AGG | - | chr7_1:13280108-13280127 | None:intergenic | 25.0% |
| ! | TAGAATGAAATGAAATGTAG+TGG | + | chr7_1:13280245-13280264 | Msa1010310:intron | 25.0% |
| !!! | TGAAATGTAGTGGATTAAAA+TGG | + | chr7_1:13280255-13280274 | Msa1010310:intron | 25.0% |
| !! | TACATTAACAGAAGCATATT+TGG | - | chr7_1:13280722-13280741 | None:intergenic | 25.0% |
| !!! | ATTTGTTATTTGGTGTTTTC+AGG | + | chr7_1:13281183-13281202 | Msa1010310:intron | 25.0% |
| ! | CATAGAATTGAAAACATCAT+GGG | - | chr7_1:13281262-13281281 | None:intergenic | 25.0% |
| ! | ACATAGAATTGAAAACATCA+TGG | - | chr7_1:13281263-13281282 | None:intergenic | 25.0% |
| !! | AAAATTCTAGTTGTAGACTA+TGG | + | chr7_1:13281303-13281322 | Msa1010310:three_prime_UTR | 25.0% |
| !! | TAGTATTCAATTTAGTTCAG+TGG | + | chr7_1:13281515-13281534 | Msa1010310:three_prime_UTR | 25.0% |
| TACTGAATGAAAGAAGCTTA+CGG | - | chr7_1:13279492-13279511 | None:intergenic | 30.0% | |
| !! | TATGAGTTGATTAGATTGCA+AGG | + | chr7_1:13279761-13279780 | Msa1010310:intron | 30.0% |
| !! | GTTGTAGATTGATTTTGTAG+TGG | + | chr7_1:13279825-13279844 | Msa1010310:intron | 30.0% |
| !!! | TGGAGTTTTGAATGTTGATT+TGG | + | chr7_1:13279914-13279933 | Msa1010310:intron | 30.0% |
| !! | TTTGAATGTTGATTTGGTAG+TGG | + | chr7_1:13279920-13279939 | Msa1010310:intron | 30.0% |
| AATTGAGTACTATGCTATGT+TGG | + | chr7_1:13280023-13280042 | Msa1010310:CDS | 30.0% | |
| ACAACTTACTTCCATTGTAA+TGG | - | chr7_1:13280065-13280084 | None:intergenic | 30.0% | |
| TTCAATGTTGATATGCATTC+AGG | + | chr7_1:13280121-13280140 | Msa1010310:intron | 30.0% | |
| TCAATGTTGATATGCATTCA+GGG | + | chr7_1:13280122-13280141 | Msa1010310:intron | 30.0% | |
| TTTGGATTAATGATATAGGG+TGG | - | chr7_1:13280339-13280358 | None:intergenic | 30.0% | |
| TGTGACCATAACATTATGTT+TGG | - | chr7_1:13280357-13280376 | None:intergenic | 30.0% | |
| ATTGTGTATGTATACCCTTA+TGG | + | chr7_1:13280384-13280403 | Msa1010310:intron | 30.0% | |
| ATTATTGCATGTGACCATAA+GGG | - | chr7_1:13280401-13280420 | None:intergenic | 30.0% | |
| AATTATTGCATGTGACCATA+AGG | - | chr7_1:13280402-13280421 | None:intergenic | 30.0% | |
| GATGTTTATCTATCAGTAGT+TGG | + | chr7_1:13280664-13280683 | Msa1010310:intron | 30.0% | |
| TAAAGAAAGCAACATATACC+AGG | - | chr7_1:13281119-13281138 | None:intergenic | 30.0% | |
| !!! | TGTACGATGCTTGTTATTTT+GGG | + | chr7_1:13281333-13281352 | Msa1010310:three_prime_UTR | 30.0% |
| ! | TATTCAATTTAGTTCAGTGG+AGG | + | chr7_1:13281518-13281537 | Msa1010310:three_prime_UTR | 30.0% |
| TACTGAATGAAAGAAGCTTA+CGG | - | chr7_1:13279492-13279511 | None:intergenic | 30.0% | |
| !! | TATGAGTTGATTAGATTGCA+AGG | + | chr7_1:13279761-13279780 | Msa1010310:intron | 30.0% |
| !! | GTTGTAGATTGATTTTGTAG+TGG | + | chr7_1:13279825-13279844 | Msa1010310:intron | 30.0% |
| !!! | TGGAGTTTTGAATGTTGATT+TGG | + | chr7_1:13279914-13279933 | Msa1010310:intron | 30.0% |
| !! | TTTGAATGTTGATTTGGTAG+TGG | + | chr7_1:13279920-13279939 | Msa1010310:intron | 30.0% |
| AATTGAGTACTATGCTATGT+TGG | + | chr7_1:13280023-13280042 | Msa1010310:CDS | 30.0% | |
| ACAACTTACTTCCATTGTAA+TGG | - | chr7_1:13280065-13280084 | None:intergenic | 30.0% | |
| TTCAATGTTGATATGCATTC+AGG | + | chr7_1:13280121-13280140 | Msa1010310:intron | 30.0% | |
| TCAATGTTGATATGCATTCA+GGG | + | chr7_1:13280122-13280141 | Msa1010310:intron | 30.0% | |
| TTTGGATTAATGATATAGGG+TGG | - | chr7_1:13280339-13280358 | None:intergenic | 30.0% | |
| TGTGACCATAACATTATGTT+TGG | - | chr7_1:13280357-13280376 | None:intergenic | 30.0% | |
| ATTGTGTATGTATACCCTTA+TGG | + | chr7_1:13280384-13280403 | Msa1010310:intron | 30.0% | |
| ATTATTGCATGTGACCATAA+GGG | - | chr7_1:13280401-13280420 | None:intergenic | 30.0% | |
| AATTATTGCATGTGACCATA+AGG | - | chr7_1:13280402-13280421 | None:intergenic | 30.0% | |
| GATGTTTATCTATCAGTAGT+TGG | + | chr7_1:13280664-13280683 | Msa1010310:intron | 30.0% | |
| TAAAGAAAGCAACATATACC+AGG | - | chr7_1:13281119-13281138 | None:intergenic | 30.0% | |
| !!! | TGTACGATGCTTGTTATTTT+GGG | + | chr7_1:13281333-13281352 | Msa1010310:three_prime_UTR | 30.0% |
| ! | TATTCAATTTAGTTCAGTGG+AGG | + | chr7_1:13281518-13281537 | Msa1010310:three_prime_UTR | 30.0% |
| AAGAGTGGAAAATATACCCT+TGG | + | chr7_1:13279636-13279655 | Msa1010310:CDS | 35.0% | |
| AGAGTGGAAAATATACCCTT+GGG | + | chr7_1:13279637-13279656 | Msa1010310:CDS | 35.0% | |
| !! | ATTACCTTTGGAACTCCTAA+GGG | - | chr7_1:13279682-13279701 | None:intergenic | 35.0% |
| !! | AATTACCTTTGGAACTCCTA+AGG | - | chr7_1:13279683-13279702 | None:intergenic | 35.0% |
| TCAATTTCAGACTTCCTCAA+AGG | - | chr7_1:13280009-13280028 | None:intergenic | 35.0% | |
| TTAATGACACAGGGAAGTAA+AGG | - | chr7_1:13280098-13280117 | None:intergenic | 35.0% | |
| TATGCATTCAGGGATTGTTT+AGG | + | chr7_1:13280132-13280151 | Msa1010310:intron | 35.0% | |
| TATCTATCAGTAGTTGGATG+TGG | + | chr7_1:13280670-13280689 | Msa1010310:intron | 35.0% | |
| ! | CAGAAGCATATTTGGAAACA+AGG | - | chr7_1:13280714-13280733 | None:intergenic | 35.0% |
| !! | TTGTTGTTTCTCCAAATCGT+TGG | + | chr7_1:13280903-13280922 | Msa1010310:intron | 35.0% |
| !! | TGTTGTTTCTCCAAATCGTT+GGG | + | chr7_1:13280904-13280923 | Msa1010310:intron | 35.0% |
| TAAGAAGAATCCCAACGATT+TGG | - | chr7_1:13280917-13280936 | None:intergenic | 35.0% | |
| ! | CTGTTATCAGTTGACTCTTA+AGG | + | chr7_1:13280965-13280984 | Msa1010310:intron | 35.0% |
| ATCATAGACAATGTTGACCT+TGG | + | chr7_1:13281044-13281063 | Msa1010310:intron | 35.0% | |
| TAGTTGTAGACTATGGTGTA+CGG | + | chr7_1:13281310-13281329 | Msa1010310:three_prime_UTR | 35.0% | |
| !!! | GTGTACGATGCTTGTTATTT+TGG | + | chr7_1:13281332-13281351 | Msa1010310:three_prime_UTR | 35.0% |
| AAGAGTGGAAAATATACCCT+TGG | + | chr7_1:13279636-13279655 | Msa1010310:CDS | 35.0% | |
| AGAGTGGAAAATATACCCTT+GGG | + | chr7_1:13279637-13279656 | Msa1010310:CDS | 35.0% | |
| !! | ATTACCTTTGGAACTCCTAA+GGG | - | chr7_1:13279682-13279701 | None:intergenic | 35.0% |
| !! | AATTACCTTTGGAACTCCTA+AGG | - | chr7_1:13279683-13279702 | None:intergenic | 35.0% |
| TCAATTTCAGACTTCCTCAA+AGG | - | chr7_1:13280009-13280028 | None:intergenic | 35.0% | |
| TTAATGACACAGGGAAGTAA+AGG | - | chr7_1:13280098-13280117 | None:intergenic | 35.0% | |
| TATGCATTCAGGGATTGTTT+AGG | + | chr7_1:13280132-13280151 | Msa1010310:intron | 35.0% | |
| TATCTATCAGTAGTTGGATG+TGG | + | chr7_1:13280670-13280689 | Msa1010310:intron | 35.0% | |
| ! | CAGAAGCATATTTGGAAACA+AGG | - | chr7_1:13280714-13280733 | None:intergenic | 35.0% |
| !! | TTGTTGTTTCTCCAAATCGT+TGG | + | chr7_1:13280903-13280922 | Msa1010310:intron | 35.0% |
| !! | TGTTGTTTCTCCAAATCGTT+GGG | + | chr7_1:13280904-13280923 | Msa1010310:intron | 35.0% |
| TAAGAAGAATCCCAACGATT+TGG | - | chr7_1:13280917-13280936 | None:intergenic | 35.0% | |
| ! | CTGTTATCAGTTGACTCTTA+AGG | + | chr7_1:13280965-13280984 | Msa1010310:intron | 35.0% |
| ATCATAGACAATGTTGACCT+TGG | + | chr7_1:13281044-13281063 | Msa1010310:intron | 35.0% | |
| TAGTTGTAGACTATGGTGTA+CGG | + | chr7_1:13281310-13281329 | Msa1010310:three_prime_UTR | 35.0% | |
| !!! | GTGTACGATGCTTGTTATTT+TGG | + | chr7_1:13281332-13281351 | Msa1010310:three_prime_UTR | 35.0% |
| TCACACCAAACCTTCAACAA+TGG | + | chr7_1:13279451-13279470 | Msa1010310:exon | 40.0% | |
| !! | GAGAACGGTTTTATACCCAA+GGG | - | chr7_1:13279655-13279674 | None:intergenic | 40.0% |
| !! | TGAGAACGGTTTTATACCCA+AGG | - | chr7_1:13279656-13279675 | None:intergenic | 40.0% |
| AAACCGTTCTCAAATCCCTT+AGG | + | chr7_1:13279664-13279683 | Msa1010310:CDS | 40.0% | |
| ACTCCTAAGGGATTTGAGAA+CGG | - | chr7_1:13279670-13279689 | None:intergenic | 40.0% | |
| AAATCCCTTAGGAGTTCCAA+AGG | + | chr7_1:13279675-13279694 | Msa1010310:CDS | 40.0% | |
| ATTTCAGACTTCCTCAAAGG+AGG | - | chr7_1:13280006-13280025 | None:intergenic | 40.0% | |
| ! | GTACTATGCTATGTTGGCTA+AGG | + | chr7_1:13280029-13280048 | Msa1010310:CDS | 40.0% |
| ! | TATGCTATGTTGGCTAAGGT+TGG | + | chr7_1:13280033-13280052 | Msa1010310:CDS | 40.0% |
| GTTGGAGTTCACCATTACAA+TGG | + | chr7_1:13280051-13280070 | Msa1010310:CDS | 40.0% | |
| CACTGATACACACTAAAGCT+CGG | - | chr7_1:13280222-13280241 | None:intergenic | 40.0% | |
| AATGACACTACTGTACGACA+GGG | - | chr7_1:13280549-13280568 | None:intergenic | 40.0% | |
| AAATGACACTACTGTACGAC+AGG | - | chr7_1:13280550-13280569 | None:intergenic | 40.0% | |
| ATTTGATCTTACGCTGCTGT+TGG | + | chr7_1:13280614-13280633 | Msa1010310:intron | 40.0% | |
| TTTGATCTTACGCTGCTGTT+GGG | + | chr7_1:13280615-13280634 | Msa1010310:intron | 40.0% | |
| CTTTACGTTTACTGATCTCC+AGG | - | chr7_1:13281234-13281253 | None:intergenic | 40.0% | |
| TACTCAATGCTCAATCAGCT+GGG | - | chr7_1:13281362-13281381 | None:intergenic | 40.0% | |
| TTACTCAATGCTCAATCAGC+TGG | - | chr7_1:13281363-13281382 | None:intergenic | 40.0% | |
| TCACACCAAACCTTCAACAA+TGG | + | chr7_1:13279451-13279470 | Msa1010310:exon | 40.0% | |
| !! | GAGAACGGTTTTATACCCAA+GGG | - | chr7_1:13279655-13279674 | None:intergenic | 40.0% |
| !! | TGAGAACGGTTTTATACCCA+AGG | - | chr7_1:13279656-13279675 | None:intergenic | 40.0% |
| AAACCGTTCTCAAATCCCTT+AGG | + | chr7_1:13279664-13279683 | Msa1010310:CDS | 40.0% | |
| ACTCCTAAGGGATTTGAGAA+CGG | - | chr7_1:13279670-13279689 | None:intergenic | 40.0% | |
| AAATCCCTTAGGAGTTCCAA+AGG | + | chr7_1:13279675-13279694 | Msa1010310:CDS | 40.0% | |
| ATTTCAGACTTCCTCAAAGG+AGG | - | chr7_1:13280006-13280025 | None:intergenic | 40.0% | |
| ! | GTACTATGCTATGTTGGCTA+AGG | + | chr7_1:13280029-13280048 | Msa1010310:CDS | 40.0% |
| ! | TATGCTATGTTGGCTAAGGT+TGG | + | chr7_1:13280033-13280052 | Msa1010310:CDS | 40.0% |
| GTTGGAGTTCACCATTACAA+TGG | + | chr7_1:13280051-13280070 | Msa1010310:CDS | 40.0% | |
| CACTGATACACACTAAAGCT+CGG | - | chr7_1:13280222-13280241 | None:intergenic | 40.0% | |
| AATGACACTACTGTACGACA+GGG | - | chr7_1:13280549-13280568 | None:intergenic | 40.0% | |
| AAATGACACTACTGTACGAC+AGG | - | chr7_1:13280550-13280569 | None:intergenic | 40.0% | |
| ATTTGATCTTACGCTGCTGT+TGG | + | chr7_1:13280614-13280633 | Msa1010310:intron | 40.0% | |
| TTTGATCTTACGCTGCTGTT+GGG | + | chr7_1:13280615-13280634 | Msa1010310:intron | 40.0% | |
| CTTTACGTTTACTGATCTCC+AGG | - | chr7_1:13281234-13281253 | None:intergenic | 40.0% | |
| TACTCAATGCTCAATCAGCT+GGG | - | chr7_1:13281362-13281381 | None:intergenic | 40.0% | |
| TTACTCAATGCTCAATCAGC+TGG | - | chr7_1:13281363-13281382 | None:intergenic | 40.0% | |
| GATGCGCAGAGAAGAAAATG+CGG | - | chr7_1:13279431-13279450 | None:intergenic | 45.0% | |
| CACCAAACCTTCAACAATGG+TGG | + | chr7_1:13279454-13279473 | Msa1010310:exon | 45.0% | |
| GAAGCTTACGGTCTTCTTTG+CGG | - | chr7_1:13279480-13279499 | None:intergenic | 45.0% | |
| !! | CTCATGAGAGCATCAACAAC+AGG | + | chr7_1:13279598-13279617 | Msa1010310:CDS | 45.0% |
| CTAACAACTGTCCTCCTTTG+AGG | + | chr7_1:13279992-13280011 | Msa1010310:CDS | 45.0% | |
| ! | TCGGCTAGCTAGAATCAATC+AGG | - | chr7_1:13280203-13280222 | None:intergenic | 45.0% |
| ! | CGAGCTTTAGTGTGTATCAG+TGG | + | chr7_1:13280220-13280239 | Msa1010310:intron | 45.0% |
| TACCAGGATCAACAATGCTG+AGG | - | chr7_1:13281103-13281122 | None:intergenic | 45.0% | |
| GACATCATCAAGACAGTTCC+TGG | + | chr7_1:13281213-13281232 | Msa1010310:CDS | 45.0% | |
| GATGCGCAGAGAAGAAAATG+CGG | - | chr7_1:13279431-13279450 | None:intergenic | 45.0% | |
| CACCAAACCTTCAACAATGG+TGG | + | chr7_1:13279454-13279473 | Msa1010310:exon | 45.0% | |
| GAAGCTTACGGTCTTCTTTG+CGG | - | chr7_1:13279480-13279499 | None:intergenic | 45.0% | |
| !! | CTCATGAGAGCATCAACAAC+AGG | + | chr7_1:13279598-13279617 | Msa1010310:CDS | 45.0% |
| CTAACAACTGTCCTCCTTTG+AGG | + | chr7_1:13279992-13280011 | Msa1010310:CDS | 45.0% | |
| ! | TCGGCTAGCTAGAATCAATC+AGG | - | chr7_1:13280203-13280222 | None:intergenic | 45.0% |
| ! | CGAGCTTTAGTGTGTATCAG+TGG | + | chr7_1:13280220-13280239 | Msa1010310:intron | 45.0% |
| TACCAGGATCAACAATGCTG+AGG | - | chr7_1:13281103-13281122 | None:intergenic | 45.0% | |
| GACATCATCAAGACAGTTCC+TGG | + | chr7_1:13281213-13281232 | Msa1010310:CDS | 45.0% | |
| GGCCACCATTGTTGAAGGTT+TGG | - | chr7_1:13279459-13279478 | None:intergenic | 50.0% | |
| TTTGCGGCCACCATTGTTGA+AGG | - | chr7_1:13279464-13279483 | None:intergenic | 50.0% | |
| CTCGCTCTTGTCATGAAGAG+TGG | + | chr7_1:13279621-13279640 | Msa1010310:CDS | 50.0% | |
| ACTTTCCACAAGCAGTGCCA+AGG | - | chr7_1:13281064-13281083 | None:intergenic | 50.0% | |
| TGCCTCAGCATTGTTGATCC+TGG | + | chr7_1:13281098-13281117 | Msa1010310:CDS | 50.0% | |
| GGCCACCATTGTTGAAGGTT+TGG | - | chr7_1:13279459-13279478 | None:intergenic | 50.0% | |
| TTTGCGGCCACCATTGTTGA+AGG | - | chr7_1:13279464-13279483 | None:intergenic | 50.0% | |
| CTCGCTCTTGTCATGAAGAG+TGG | + | chr7_1:13279621-13279640 | Msa1010310:CDS | 50.0% | |
| ACTTTCCACAAGCAGTGCCA+AGG | - | chr7_1:13281064-13281083 | None:intergenic | 50.0% | |
| TGCCTCAGCATTGTTGATCC+TGG | + | chr7_1:13281098-13281117 | Msa1010310:CDS | 50.0% | |
| GTTGACCTTGGCACTGCTTG+TGG | + | chr7_1:13281056-13281075 | Msa1010310:CDS | 55.0% | |
| GTTGACCTTGGCACTGCTTG+TGG | + | chr7_1:13281056-13281075 | Msa1010310:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 13279397 | 13281556 | 13279397 | ID=Msa1010310;Name=Msa1010310 |
| chr7_1 | mRNA | 13279397 | 13281556 | 13279397 | ID=Msa1010310-mRNA-1;Parent=Msa1010310;Name=Msa1010310-mRNA-1;_AED=0.04;_eAED=0.04;_QI=73|1|1|1|1|1|5|311|112 |
| chr7_1 | exon | 13279397 | 13279490 | 13279397 | ID=Msa1010310-mRNA-1:exon:3326;Parent=Msa1010310-mRNA-1 |
| chr7_1 | exon | 13279591 | 13279696 | 13279591 | ID=Msa1010310-mRNA-1:exon:3327;Parent=Msa1010310-mRNA-1 |
| chr7_1 | exon | 13279974 | 13280075 | 13279974 | ID=Msa1010310-mRNA-1:exon:3328;Parent=Msa1010310-mRNA-1 |
| chr7_1 | exon | 13281051 | 13281119 | 13281051 | ID=Msa1010310-mRNA-1:exon:3329;Parent=Msa1010310-mRNA-1 |
| chr7_1 | exon | 13281205 | 13281556 | 13281205 | ID=Msa1010310-mRNA-1:exon:3330;Parent=Msa1010310-mRNA-1 |
| chr7_1 | five_prime_UTR | 13279397 | 13279469 | 13279397 | ID=Msa1010310-mRNA-1:five_prime_utr;Parent=Msa1010310-mRNA-1 |
| chr7_1 | CDS | 13279470 | 13279490 | 13279470 | ID=Msa1010310-mRNA-1:cds;Parent=Msa1010310-mRNA-1 |
| chr7_1 | CDS | 13279591 | 13279696 | 13279591 | ID=Msa1010310-mRNA-1:cds;Parent=Msa1010310-mRNA-1 |
| chr7_1 | CDS | 13279974 | 13280075 | 13279974 | ID=Msa1010310-mRNA-1:cds;Parent=Msa1010310-mRNA-1 |
| chr7_1 | CDS | 13281051 | 13281119 | 13281051 | ID=Msa1010310-mRNA-1:cds;Parent=Msa1010310-mRNA-1 |
| chr7_1 | CDS | 13281205 | 13281245 | 13281205 | ID=Msa1010310-mRNA-1:cds;Parent=Msa1010310-mRNA-1 |
| chr7_1 | three_prime_UTR | 13281246 | 13281556 | 13281246 | ID=Msa1010310-mRNA-1:three_prime_utr;Parent=Msa1010310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
