Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1204160 | XP_003609265.1 | 99.065 | 107 | 1 | 0 | 1 | 107 | 1 | 107 | 1.51e-68 | 211 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1204160 | sp|Q02921|NO93_SOYBN | 84.000 | 100 | 16 | 0 | 8 | 107 | 4 | 103 | 7.01e-45 | 143 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1204160 | G7JVA6 | 99.065 | 107 | 1 | 0 | 1 | 107 | 1 | 107 | 7.20e-69 | 211 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006700 | Msa1204160 | -0.814595 | 1.422234e-51 | -8.615850e-47 |
| Msa0036580 | Msa1204160 | 0.805120 | 1.555783e-49 | -8.615850e-47 |
| Msa0089080 | Msa1204160 | 0.809089 | 2.247886e-50 | -8.615850e-47 |
| Msa0617370 | Msa1204160 | -0.811405 | 7.118552e-51 | -8.615850e-47 |
| Msa0620640 | Msa1204160 | -0.824847 | 6.465703e-54 | -8.615850e-47 |
| Msa0639030 | Msa1204160 | -0.810964 | 8.868622e-51 | -8.615850e-47 |
| Msa0640380 | Msa1204160 | -0.813491 | 2.491764e-51 | -8.615850e-47 |
| Msa0656270 | Msa1204160 | -0.824184 | 9.262763e-54 | -8.615850e-47 |
| Msa0660880 | Msa1204160 | 0.839418 | 1.603383e-57 | -8.615850e-47 |
| Msa0678820 | Msa1204160 | -0.803234 | 3.842668e-49 | -8.615850e-47 |
| Msa0697140 | Msa1204160 | -0.830306 | 3.163345e-55 | -8.615850e-47 |
| Msa0697600 | Msa1204160 | -0.810521 | 1.105994e-50 | -8.615850e-47 |
| Msa0700070 | Msa1204160 | -0.819537 | 1.102824e-52 | -8.615850e-47 |
| Msa0701840 | Msa1204160 | 0.803725 | 3.039480e-49 | -8.615850e-47 |
| Msa0714600 | Msa1204160 | -0.812095 | 5.037604e-51 | -8.615850e-47 |
| Msa0716740 | Msa1204160 | 0.832388 | 9.726971e-56 | -8.615850e-47 |
| Msa0722930 | Msa1204160 | -0.839116 | 1.920674e-57 | -8.615850e-47 |
| Msa0723140 | Msa1204160 | -0.823723 | 1.188077e-53 | -8.615850e-47 |
| Msa0731710 | Msa1204160 | -0.801700 | 7.957186e-49 | -8.615850e-47 |
| Msa0774810 | Msa1204160 | 0.812658 | 3.794315e-51 | -8.615850e-47 |
| Msa0799290 | Msa1204160 | 0.840894 | 6.603195e-58 | -8.615850e-47 |
| Msa0819670 | Msa1204160 | -0.805427 | 1.342024e-49 | -8.615850e-47 |
| Msa0837510 | Msa1204160 | 0.839321 | 1.699079e-57 | -8.615850e-47 |
| Msa0135890 | Msa1204160 | 0.803918 | 2.771892e-49 | -8.615850e-47 |
| Msa0185640 | Msa1204160 | 0.810116 | 1.352868e-50 | -8.615850e-47 |
| Msa0198440 | Msa1204160 | -0.806552 | 7.780870e-50 | -8.615850e-47 |
| Msa0371420 | Msa1204160 | 0.805366 | 1.382031e-49 | -8.615850e-47 |
| Msa0411000 | Msa1204160 | -0.812633 | 3.842917e-51 | -8.615850e-47 |
| Msa0414070 | Msa1204160 | -0.815942 | 7.138397e-52 | -8.615850e-47 |
| Msa0419620 | Msa1204160 | 0.829190 | 5.912585e-55 | -8.615850e-47 |
| Msa0431520 | Msa1204160 | -0.803673 | 3.116639e-49 | -8.615850e-47 |
| Msa0434890 | Msa1204160 | 0.808398 | 3.159181e-50 | -8.615850e-47 |
| Msa0454940 | Msa1204160 | -0.824375 | 8.350895e-54 | -8.615850e-47 |
| Msa0459120 | Msa1204160 | -0.802728 | 4.888974e-49 | -8.615850e-47 |
| Msa0465680 | Msa1204160 | 0.814981 | 1.168038e-51 | -8.615850e-47 |
| Msa0988500 | Msa1204160 | -0.842802 | 2.069976e-58 | -8.615850e-47 |
| Msa1006750 | Msa1204160 | 0.825559 | 4.388650e-54 | -8.615850e-47 |
| Msa1011310 | Msa1204160 | 0.804218 | 2.400709e-49 | -8.615850e-47 |
| Msa1011320 | Msa1204160 | 0.886434 | 3.433349e-72 | -8.615850e-47 |
| Msa1011350 | Msa1204160 | 0.888065 | 8.211408e-73 | -8.615850e-47 |
| Msa1080790 | Msa1204160 | -0.817155 | 3.819019e-52 | -8.615850e-47 |
| Msa1095800 | Msa1204160 | 0.865423 | 5.971755e-65 | -8.615850e-47 |
| Msa0248270 | Msa1204160 | 0.800713 | 1.266789e-48 | -8.615850e-47 |
| Msa0278670 | Msa1204160 | -0.810244 | 1.269294e-50 | -8.615850e-47 |
| Msa0327860 | Msa1204160 | -0.810901 | 9.152575e-51 | -8.615850e-47 |
| Msa0340550 | Msa1204160 | -0.803292 | 3.737312e-49 | -8.615850e-47 |
| Msa0362430 | Msa1204160 | -0.814938 | 1.193869e-51 | -8.615850e-47 |
| Msa1118930 | Msa1204160 | -0.819762 | 9.796845e-53 | -8.615850e-47 |
| Msa1141250 | Msa1204160 | 0.813044 | 3.124054e-51 | -8.615850e-47 |
| Msa1142850 | Msa1204160 | 0.898999 | 3.057619e-77 | -8.615850e-47 |
| Msa1142860 | Msa1204160 | 0.869146 | 3.853300e-66 | -8.615850e-47 |
| Msa1157020 | Msa1204160 | -0.801682 | 8.025874e-49 | -8.615850e-47 |
| Msa1204160 | Msa1204190 | 0.985546 | 6.642336e-164 | -8.615850e-47 |
| Msa1204160 | Msa1207480 | 0.807358 | 5.254852e-50 | -8.615850e-47 |
| Msa1204160 | Msa1211390 | -0.814555 | 1.451611e-51 | -8.615850e-47 |
| Msa1204160 | Msa1217810 | -0.810060 | 1.390742e-50 | -8.615850e-47 |
| Msa1204160 | Msa1222030 | 0.813151 | 2.959616e-51 | -8.615850e-47 |
| Msa1204160 | Msa1256540 | 0.801078 | 1.067075e-48 | -8.615850e-47 |
| Msa1204160 | Msa1282210 | -0.800650 | 1.304576e-48 | -8.615850e-47 |
| Msa1204160 | Msa1335970 | 0.805927 | 1.054081e-49 | -8.615850e-47 |
| Msa1204160 | Msa1371580 | -0.818122 | 2.311437e-52 | -8.615850e-47 |
| Msa1204160 | Msa1379710 | -0.816877 | 4.407957e-52 | -8.615850e-47 |
| Msa1204160 | Msa1386520 | -0.816234 | 6.142698e-52 | -8.615850e-47 |
| Msa1204160 | Msa1405470 | -0.801226 | 9.952281e-49 | -8.615850e-47 |
| Msa0502910 | Msa1204160 | -0.810201 | 1.296810e-50 | -8.615850e-47 |
| Msa0505660 | Msa1204160 | -0.818302 | 2.104077e-52 | -8.615850e-47 |
| Msa0511720 | Msa1204160 | 0.834248 | 3.344752e-56 | -8.615850e-47 |
| Msa0524890 | Msa1204160 | 0.814924 | 1.202346e-51 | -8.615850e-47 |
| Msa0527250 | Msa1204160 | -0.817997 | 2.466306e-52 | -8.615850e-47 |
| Msa0528970 | Msa1204160 | -0.809391 | 1.936541e-50 | -8.615850e-47 |
| Msa0543900 | Msa1204160 | -0.805435 | 1.336889e-49 | -8.615850e-47 |
| Msa0843280 | Msa1204160 | -0.816585 | 5.125888e-52 | -8.615850e-47 |
| Msa0951720 | Msa1204160 | -0.836135 | 1.117375e-56 | -8.615850e-47 |
| Msa0961420 | Msa1204160 | 0.831297 | 1.807857e-55 | -8.615850e-47 |
| Msa0965520 | Msa1204160 | -0.811966 | 5.374891e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1204160 | MtrunA17_Chr4g0063331 | 99.065 | 107 | 1 | 0 | 1 | 107 | 1 | 107 | 1.39e-72 | 211 |
| Msa1204160 | MtrunA17_Chr1g0146471 | 60.759 | 79 | 31 | 0 | 21 | 99 | 26 | 104 | 5.81e-29 | 101 |
| Msa1204160 | MtrunA17_Chr3g0140601 | 53.086 | 81 | 38 | 0 | 21 | 101 | 27 | 107 | 1.23e-25 | 92.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1204160 | AT5G25940.1 | 67.347 | 49 | 16 | 0 | 52 | 100 | 55 | 103 | 1.01e-17 | 72.8 |
Find 55 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGAACCAGCTTGGCTTATC+TGG | 0.217498 | 8_1:+59676245 | Msa1204160:CDS |
| CACCAACTCACCTTATAAAT+AGG | 0.248401 | 8_1:+59676069 | Msa1204160:five_prime_UTR |
| AACTGGCTAAATATTAATTA+AGG | 0.254751 | 8_1:-59676945 | None:intergenic |
| TAAACAGGTGAATAGATAAT+TGG | 0.268753 | 8_1:-59676127 | None:intergenic |
| GAGCTTGAGCAGTGGGATTC+AGG | 0.269132 | 8_1:-59676661 | None:intergenic |
| ACCACTCTTCTCCCTTTCTT+AGG | 0.271157 | 8_1:+59676015 | Msa1204160:five_prime_UTR |
| ATGTTGGTTGCCTATTTATA+AGG | 0.325220 | 8_1:-59676079 | None:intergenic |
| TGAAAGAAGTGTTTGTAAAC+AGG | 0.339570 | 8_1:-59676142 | None:intergenic |
| TGCATTGGAGGGTCGGTTGA+TGG | 0.374033 | 8_1:-59676858 | None:intergenic |
| CTAAGGCAGGTGGAGTTTGA+TGG | 0.396613 | 8_1:-59675991 | None:intergenic |
| TTCAATTGAATCTTTGAAGA+TGG | 0.404082 | 8_1:+59676188 | Msa1204160:exon |
| TGCATTTGTAATTCATGCAT+TGG | 0.411064 | 8_1:-59676873 | None:intergenic |
| TGAATTACAAATGCATAACT+TGG | 0.437148 | 8_1:+59676881 | Msa1204160:exon |
| CTAGTGTTAGGATGCTACCT+TGG | 0.442749 | 8_1:+59676627 | Msa1204160:CDS |
| CAAGCTCTCATAATTTCTAC+AGG | 0.456647 | 8_1:+59676677 | Msa1204160:CDS |
| ATTAGCAGCAACATTTCTCT+TGG | 0.469394 | 8_1:-59676211 | None:intergenic |
| TGATGACTAGTACATGAAAC+TGG | 0.469750 | 8_1:-59676962 | None:intergenic |
| GCTTGGCCATGGCCAACCTC+TGG | 0.472159 | 8_1:-59676269 | None:intergenic |
| GAGAAGAGTGGTACTAAGGC+AGG | 0.474800 | 8_1:-59676004 | None:intergenic |
| CTAATTTGCATTCATACGAT+TGG | 0.477470 | 8_1:-59677047 | None:intergenic |
| ACATGCAGCTGGCTAGTGTT+AGG | 0.477537 | 8_1:+59676615 | Msa1204160:intron |
| AAGGGAGAAGAGTGGTACTA+AGG | 0.481424 | 8_1:-59676008 | None:intergenic |
| ATGTACTTATAATTAAAGAA+TGG | 0.482494 | 8_1:+59676988 | Msa1204160:three_prime_UTR |
| GGCTTATCTGGACCAGAGGT+TGG | 0.484520 | 8_1:+59676257 | Msa1204160:CDS |
| TCCTCTTGAGAGAACCAGCT+TGG | 0.495079 | 8_1:+59676236 | Msa1204160:CDS |
| ATGAGAACAGCGCTTGGCCA+TGG | 0.500574 | 8_1:-59676280 | None:intergenic |
| AGTAGCTGACAAGACTGTAT+TGG | 0.503109 | 8_1:+59676817 | Msa1204160:CDS |
| GGGTGTAATGGCTGGAGCTA+AGG | 0.508105 | 8_1:+59676398 | Msa1204160:CDS |
| TGCCTATTTATAAGGTGAGT+TGG | 0.511178 | 8_1:-59676071 | None:intergenic |
| ATAACTTGGGATCGTGGACT+CGG | 0.512892 | 8_1:+59676895 | Msa1204160:three_prime_UTR |
| TTCAGGTTTGCTCTTGCCCA+AGG | 0.514820 | 8_1:-59676644 | None:intergenic |
| TAGTGTTAGGATGCTACCTT+GGG | 0.518544 | 8_1:+59676628 | Msa1204160:CDS |
| ATGGCCAAGCGCTGTTCTCA+TGG | 0.525880 | 8_1:+59676282 | Msa1204160:CDS |
| TAATTCATGCATTGGAGGGT+CGG | 0.526783 | 8_1:-59676865 | None:intergenic |
| ATTATGAGAGCTTGAGCAGT+GGG | 0.542769 | 8_1:-59676668 | None:intergenic |
| GAATGAAGAGTAGTTGATGT+TGG | 0.547673 | 8_1:-59676095 | None:intergenic |
| CTGGTCCAGATAAGCCAAGC+TGG | 0.549243 | 8_1:-59676250 | None:intergenic |
| ATTTGTAATTCATGCATTGG+AGG | 0.558334 | 8_1:-59676870 | None:intergenic |
| AGGAGTAGTTACAGTTGGAA+TGG | 0.559635 | 8_1:-59676448 | None:intergenic |
| TAAACAGAGGGTGTAATGGC+TGG | 0.563650 | 8_1:+59676390 | Msa1204160:intron |
| TTTGTAATTCATGCATTGGA+GGG | 0.572592 | 8_1:-59676869 | None:intergenic |
| AAATGCATAACTTGGGATCG+TGG | 0.576904 | 8_1:+59676889 | Msa1204160:three_prime_UTR |
| AAAACAACTGTCTGAGACGG+TGG | 0.580606 | 8_1:+59675955 | None:intergenic |
| TGTGTAAACAGAGGGTGTAA+TGG | 0.582073 | 8_1:+59676386 | Msa1204160:intron |
| GCCAAGCTGGTTCTCTCAAG+AGG | 0.593616 | 8_1:-59676237 | None:intergenic |
| GAATTACAAATGCATAACTT+GGG | 0.594223 | 8_1:+59676882 | Msa1204160:exon |
| AGTTACAGTTGGAATGGCAG+TGG | 0.597023 | 8_1:-59676442 | None:intergenic |
| AAGAGTGGTACTAAGGCAGG+TGG | 0.612552 | 8_1:-59676001 | None:intergenic |
| TCTGGACCAGAGGTTGGCCA+TGG | 0.615026 | 8_1:+59676263 | Msa1204160:CDS |
| ATTACCATGAGAACAGCGCT+TGG | 0.632062 | 8_1:-59676286 | None:intergenic |
| GGACTCGGATGCACTGCACT+CGG | 0.638155 | 8_1:+59676910 | Msa1204160:three_prime_UTR |
| GTGAAAACAACTGTCTGAGA+CGG | 0.643345 | 8_1:+59675952 | None:intergenic |
| GCTTGGCTTATCTGGACCAG+AGG | 0.644191 | 8_1:+59676253 | Msa1204160:CDS |
| AATTATGAGAGCTTGAGCAG+TGG | 0.660731 | 8_1:-59676669 | None:intergenic |
| ACCTAAGAAAGGGAGAAGAG+TGG | 0.696384 | 8_1:-59676016 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACTAAATACAATAACAA+AGG | - | chr8_1:59676356-59676375 | None:intergenic | 15.0% |
| !! | ATGTACTTATAATTAAAGAA+TGG | + | chr8_1:59676988-59677007 | Msa1204160:three_prime_UTR | 15.0% |
| !! | AAAACTAAATACAATAACAA+AGG | - | chr8_1:59676356-59676375 | None:intergenic | 15.0% |
| !! | ATGTACTTATAATTAAAGAA+TGG | + | chr8_1:59676988-59677007 | Msa1204160:three_prime_UTR | 15.0% |
| !!! | ATTATTTTGAACCTAAGAAA+GGG | - | chr8_1:59676029-59676048 | None:intergenic | 20.0% |
| !!! | AATTATTTTGAACCTAAGAA+AGG | - | chr8_1:59676030-59676049 | None:intergenic | 20.0% |
| !! | TCAATGTATAATGTAATCTT+TGG | + | chr8_1:59676327-59676346 | Msa1204160:intron | 20.0% |
| !! | CAGAACTATATCAAAATTAA+TGG | - | chr8_1:59676506-59676525 | None:intergenic | 20.0% |
| !! | TTTCTTAGGATATTTAAAAG+TGG | - | chr8_1:59676553-59676572 | None:intergenic | 20.0% |
| !!! | CTTTTTGGTATATAATTATC+TGG | + | chr8_1:59676577-59676596 | Msa1204160:intron | 20.0% |
| !! | AACTGGCTAAATATTAATTA+AGG | - | chr8_1:59676948-59676967 | None:intergenic | 20.0% |
| !!! | ATTATTTTGAACCTAAGAAA+GGG | - | chr8_1:59676029-59676048 | None:intergenic | 20.0% |
| !!! | AATTATTTTGAACCTAAGAA+AGG | - | chr8_1:59676030-59676049 | None:intergenic | 20.0% |
| !! | TCAATGTATAATGTAATCTT+TGG | + | chr8_1:59676327-59676346 | Msa1204160:intron | 20.0% |
| !! | CAGAACTATATCAAAATTAA+TGG | - | chr8_1:59676506-59676525 | None:intergenic | 20.0% |
| !! | TTTCTTAGGATATTTAAAAG+TGG | - | chr8_1:59676553-59676572 | None:intergenic | 20.0% |
| !!! | CTTTTTGGTATATAATTATC+TGG | + | chr8_1:59676577-59676596 | Msa1204160:intron | 20.0% |
| !! | AACTGGCTAAATATTAATTA+AGG | - | chr8_1:59676948-59676967 | None:intergenic | 20.0% |
| ! | TAAACAGGTGAATAGATAAT+TGG | - | chr8_1:59676130-59676149 | None:intergenic | 25.0% |
| !! | TTCAATTGAATCTTTGAAGA+TGG | + | chr8_1:59676188-59676207 | Msa1204160:exon | 25.0% |
| ! | TGAAGCAAAGAAAATTGAAT+AGG | - | chr8_1:59676478-59676497 | None:intergenic | 25.0% |
| !! | ATCCTAAGAAAGATACTTTT+TGG | + | chr8_1:59676562-59676581 | Msa1204160:intron | 25.0% |
| !!! | TACCAAAAAGTATCTTTCTT+AGG | - | chr8_1:59676567-59676586 | None:intergenic | 25.0% |
| ! | TGAATTACAAATGCATAACT+TGG | + | chr8_1:59676881-59676900 | Msa1204160:exon | 25.0% |
| ! | GAATTACAAATGCATAACTT+GGG | + | chr8_1:59676882-59676901 | Msa1204160:exon | 25.0% |
| ! | AAATTAGTAACTTCTCTTTC+TGG | + | chr8_1:59677063-59677082 | Msa1204160:three_prime_UTR | 25.0% |
| ! | TAAACAGGTGAATAGATAAT+TGG | - | chr8_1:59676130-59676149 | None:intergenic | 25.0% |
| !! | TTCAATTGAATCTTTGAAGA+TGG | + | chr8_1:59676188-59676207 | Msa1204160:exon | 25.0% |
| ! | TGAAGCAAAGAAAATTGAAT+AGG | - | chr8_1:59676478-59676497 | None:intergenic | 25.0% |
| !! | ATCCTAAGAAAGATACTTTT+TGG | + | chr8_1:59676562-59676581 | Msa1204160:intron | 25.0% |
| !!! | TACCAAAAAGTATCTTTCTT+AGG | - | chr8_1:59676567-59676586 | None:intergenic | 25.0% |
| ! | TGAATTACAAATGCATAACT+TGG | + | chr8_1:59676881-59676900 | Msa1204160:exon | 25.0% |
| ! | GAATTACAAATGCATAACTT+GGG | + | chr8_1:59676882-59676901 | Msa1204160:exon | 25.0% |
| ! | ATGTTGGTTGCCTATTTATA+AGG | - | chr8_1:59676082-59676101 | None:intergenic | 30.0% |
| !! | TGAAAGAAGTGTTTGTAAAC+AGG | - | chr8_1:59676145-59676164 | None:intergenic | 30.0% |
| AAGAAAATTGAATAGGTGGA+AGG | - | chr8_1:59676471-59676490 | None:intergenic | 30.0% | |
| AGCAAAGAAAATTGAATAGG+TGG | - | chr8_1:59676475-59676494 | None:intergenic | 30.0% | |
| CCACTACAAACAAAATATGA+GGG | - | chr8_1:59676778-59676797 | None:intergenic | 30.0% | |
| TTTGTAATTCATGCATTGGA+GGG | - | chr8_1:59676872-59676891 | None:intergenic | 30.0% | |
| ATTTGTAATTCATGCATTGG+AGG | - | chr8_1:59676873-59676892 | None:intergenic | 30.0% | |
| TGCATTTGTAATTCATGCAT+TGG | - | chr8_1:59676876-59676895 | None:intergenic | 30.0% | |
| ! | CTAATTTGCATTCATACGAT+TGG | - | chr8_1:59677050-59677069 | None:intergenic | 30.0% |
| ! | ATGTTGGTTGCCTATTTATA+AGG | - | chr8_1:59676082-59676101 | None:intergenic | 30.0% |
| !! | TGAAAGAAGTGTTTGTAAAC+AGG | - | chr8_1:59676145-59676164 | None:intergenic | 30.0% |
| AAGAAAATTGAATAGGTGGA+AGG | - | chr8_1:59676471-59676490 | None:intergenic | 30.0% | |
| AGCAAAGAAAATTGAATAGG+TGG | - | chr8_1:59676475-59676494 | None:intergenic | 30.0% | |
| CCACTACAAACAAAATATGA+GGG | - | chr8_1:59676778-59676797 | None:intergenic | 30.0% | |
| TTTGTAATTCATGCATTGGA+GGG | - | chr8_1:59676872-59676891 | None:intergenic | 30.0% | |
| ATTTGTAATTCATGCATTGG+AGG | - | chr8_1:59676873-59676892 | None:intergenic | 30.0% | |
| TGCATTTGTAATTCATGCAT+TGG | - | chr8_1:59676876-59676895 | None:intergenic | 30.0% | |
| ! | CTAATTTGCATTCATACGAT+TGG | - | chr8_1:59677050-59677069 | None:intergenic | 30.0% |
| CACCAACTCACCTTATAAAT+AGG | + | chr8_1:59676069-59676088 | Msa1204160:five_prime_UTR | 35.0% | |
| TGCCTATTTATAAGGTGAGT+TGG | - | chr8_1:59676074-59676093 | None:intergenic | 35.0% | |
| ! | GAATGAAGAGTAGTTGATGT+TGG | - | chr8_1:59676098-59676117 | None:intergenic | 35.0% |
| ATTAGCAGCAACATTTCTCT+TGG | - | chr8_1:59676214-59676233 | None:intergenic | 35.0% | |
| CAAGCTCTCATAATTTCTAC+AGG | + | chr8_1:59676677-59676696 | Msa1204160:CDS | 35.0% | |
| ! | TTGATCAGTGTTGAGCAATA+AGG | - | chr8_1:59676716-59676735 | None:intergenic | 35.0% |
| TGTATCAAGCAATGATTGTG+AGG | - | chr8_1:59676746-59676765 | None:intergenic | 35.0% | |
| !! | CCCTCATATTTTGTTTGTAG+TGG | + | chr8_1:59676775-59676794 | Msa1204160:intron | 35.0% |
| GCCACTACAAACAAAATATG+AGG | - | chr8_1:59676779-59676798 | None:intergenic | 35.0% | |
| !! | CATATTTTGTTTGTAGTGGC+TGG | + | chr8_1:59676779-59676798 | Msa1204160:intron | 35.0% |
| TGATGACTAGTACATGAAAC+TGG | - | chr8_1:59676965-59676984 | None:intergenic | 35.0% | |
| CACCAACTCACCTTATAAAT+AGG | + | chr8_1:59676069-59676088 | Msa1204160:five_prime_UTR | 35.0% | |
| TGCCTATTTATAAGGTGAGT+TGG | - | chr8_1:59676074-59676093 | None:intergenic | 35.0% | |
| ! | GAATGAAGAGTAGTTGATGT+TGG | - | chr8_1:59676098-59676117 | None:intergenic | 35.0% |
| ATTAGCAGCAACATTTCTCT+TGG | - | chr8_1:59676214-59676233 | None:intergenic | 35.0% | |
| CAAGCTCTCATAATTTCTAC+AGG | + | chr8_1:59676677-59676696 | Msa1204160:CDS | 35.0% | |
| ! | TTGATCAGTGTTGAGCAATA+AGG | - | chr8_1:59676716-59676735 | None:intergenic | 35.0% |
| TGTATCAAGCAATGATTGTG+AGG | - | chr8_1:59676746-59676765 | None:intergenic | 35.0% | |
| !! | CCCTCATATTTTGTTTGTAG+TGG | + | chr8_1:59676775-59676794 | Msa1204160:intron | 35.0% |
| GCCACTACAAACAAAATATG+AGG | - | chr8_1:59676779-59676798 | None:intergenic | 35.0% | |
| !! | CATATTTTGTTTGTAGTGGC+TGG | + | chr8_1:59676779-59676798 | Msa1204160:intron | 35.0% |
| TGATGACTAGTACATGAAAC+TGG | - | chr8_1:59676965-59676984 | None:intergenic | 35.0% | |
| TCCATTCCTTGTGTAAACAG+AGG | + | chr8_1:59676377-59676396 | Msa1204160:intron | 40.0% | |
| CCATTCCTTGTGTAAACAGA+GGG | + | chr8_1:59676378-59676397 | Msa1204160:intron | 40.0% | |
| TTACACCCTCTGTTTACACA+AGG | - | chr8_1:59676386-59676405 | None:intergenic | 40.0% | |
| ! | TGTGTAAACAGAGGGTGTAA+TGG | + | chr8_1:59676386-59676405 | Msa1204160:intron | 40.0% |
| AGGAGTAGTTACAGTTGGAA+TGG | - | chr8_1:59676451-59676470 | None:intergenic | 40.0% | |
| ATATATGCTTGACATGCAGC+TGG | + | chr8_1:59676604-59676623 | Msa1204160:intron | 40.0% | |
| TAGTGTTAGGATGCTACCTT+GGG | + | chr8_1:59676628-59676647 | Msa1204160:CDS | 40.0% | |
| ATTATGAGAGCTTGAGCAGT+GGG | - | chr8_1:59676671-59676690 | None:intergenic | 40.0% | |
| AATTATGAGAGCTTGAGCAG+TGG | - | chr8_1:59676672-59676691 | None:intergenic | 40.0% | |
| ! | ATCAGTGTTGAGCAATAAGG+AGG | - | chr8_1:59676713-59676732 | None:intergenic | 40.0% |
| AGTAGCTGACAAGACTGTAT+TGG | + | chr8_1:59676817-59676836 | Msa1204160:CDS | 40.0% | |
| TAATTCATGCATTGGAGGGT+CGG | - | chr8_1:59676868-59676887 | None:intergenic | 40.0% | |
| AAATGCATAACTTGGGATCG+TGG | + | chr8_1:59676889-59676908 | Msa1204160:three_prime_UTR | 40.0% | |
| TCCATTCCTTGTGTAAACAG+AGG | + | chr8_1:59676377-59676396 | Msa1204160:intron | 40.0% | |
| CCATTCCTTGTGTAAACAGA+GGG | + | chr8_1:59676378-59676397 | Msa1204160:intron | 40.0% | |
| TTACACCCTCTGTTTACACA+AGG | - | chr8_1:59676386-59676405 | None:intergenic | 40.0% | |
| ! | TGTGTAAACAGAGGGTGTAA+TGG | + | chr8_1:59676386-59676405 | Msa1204160:intron | 40.0% |
| AGGAGTAGTTACAGTTGGAA+TGG | - | chr8_1:59676451-59676470 | None:intergenic | 40.0% | |
| ATATATGCTTGACATGCAGC+TGG | + | chr8_1:59676604-59676623 | Msa1204160:intron | 40.0% | |
| TAGTGTTAGGATGCTACCTT+GGG | + | chr8_1:59676628-59676647 | Msa1204160:CDS | 40.0% | |
| ATTATGAGAGCTTGAGCAGT+GGG | - | chr8_1:59676671-59676690 | None:intergenic | 40.0% | |
| AATTATGAGAGCTTGAGCAG+TGG | - | chr8_1:59676672-59676691 | None:intergenic | 40.0% | |
| ! | ATCAGTGTTGAGCAATAAGG+AGG | - | chr8_1:59676713-59676732 | None:intergenic | 40.0% |
| AGTAGCTGACAAGACTGTAT+TGG | + | chr8_1:59676817-59676836 | Msa1204160:CDS | 40.0% | |
| TAATTCATGCATTGGAGGGT+CGG | - | chr8_1:59676868-59676887 | None:intergenic | 40.0% | |
| AAATGCATAACTTGGGATCG+TGG | + | chr8_1:59676889-59676908 | Msa1204160:three_prime_UTR | 40.0% | |
| AAGGGAGAAGAGTGGTACTA+AGG | - | chr8_1:59676011-59676030 | None:intergenic | 45.0% | |
| ACCACTCTTCTCCCTTTCTT+AGG | + | chr8_1:59676015-59676034 | Msa1204160:five_prime_UTR | 45.0% | |
| ACCTAAGAAAGGGAGAAGAG+TGG | - | chr8_1:59676019-59676038 | None:intergenic | 45.0% | |
| ATTACCATGAGAACAGCGCT+TGG | - | chr8_1:59676289-59676308 | None:intergenic | 45.0% | |
| CCCTCTGTTTACACAAGGAA+TGG | - | chr8_1:59676381-59676400 | None:intergenic | 45.0% | |
| ! | TAAACAGAGGGTGTAATGGC+TGG | + | chr8_1:59676390-59676409 | Msa1204160:intron | 45.0% |
| AGTTACAGTTGGAATGGCAG+TGG | - | chr8_1:59676445-59676464 | None:intergenic | 45.0% | |
| GTGGAAGGAGTAGTTACAGT+TGG | - | chr8_1:59676456-59676475 | None:intergenic | 45.0% | |
| CTAGTGTTAGGATGCTACCT+TGG | + | chr8_1:59676627-59676646 | Msa1204160:CDS | 45.0% | |
| ATAACTTGGGATCGTGGACT+CGG | + | chr8_1:59676895-59676914 | Msa1204160:three_prime_UTR | 45.0% | |
| AAGGGAGAAGAGTGGTACTA+AGG | - | chr8_1:59676011-59676030 | None:intergenic | 45.0% | |
| ACCACTCTTCTCCCTTTCTT+AGG | + | chr8_1:59676015-59676034 | Msa1204160:five_prime_UTR | 45.0% | |
| ACCTAAGAAAGGGAGAAGAG+TGG | - | chr8_1:59676019-59676038 | None:intergenic | 45.0% | |
| ATTACCATGAGAACAGCGCT+TGG | - | chr8_1:59676289-59676308 | None:intergenic | 45.0% | |
| CCCTCTGTTTACACAAGGAA+TGG | - | chr8_1:59676381-59676400 | None:intergenic | 45.0% | |
| ! | TAAACAGAGGGTGTAATGGC+TGG | + | chr8_1:59676390-59676409 | Msa1204160:intron | 45.0% |
| AGTTACAGTTGGAATGGCAG+TGG | - | chr8_1:59676445-59676464 | None:intergenic | 45.0% | |
| GTGGAAGGAGTAGTTACAGT+TGG | - | chr8_1:59676456-59676475 | None:intergenic | 45.0% | |
| CTAGTGTTAGGATGCTACCT+TGG | + | chr8_1:59676627-59676646 | Msa1204160:CDS | 45.0% | |
| ATAACTTGGGATCGTGGACT+CGG | + | chr8_1:59676895-59676914 | Msa1204160:three_prime_UTR | 45.0% | |
| CTAAGGCAGGTGGAGTTTGA+TGG | - | chr8_1:59675994-59676013 | None:intergenic | 50.0% | |
| AAGAGTGGTACTAAGGCAGG+TGG | - | chr8_1:59676004-59676023 | None:intergenic | 50.0% | |
| GAGAAGAGTGGTACTAAGGC+AGG | - | chr8_1:59676007-59676026 | None:intergenic | 50.0% | |
| TCCTCTTGAGAGAACCAGCT+TGG | + | chr8_1:59676236-59676255 | Msa1204160:CDS | 50.0% | |
| GAGAACCAGCTTGGCTTATC+TGG | + | chr8_1:59676245-59676264 | Msa1204160:CDS | 50.0% | |
| ACATGCAGCTGGCTAGTGTT+AGG | + | chr8_1:59676615-59676634 | Msa1204160:intron | 50.0% | |
| ! | TTCAGGTTTGCTCTTGCCCA+AGG | - | chr8_1:59676647-59676666 | None:intergenic | 50.0% |
| CTAAGGCAGGTGGAGTTTGA+TGG | - | chr8_1:59675994-59676013 | None:intergenic | 50.0% | |
| AAGAGTGGTACTAAGGCAGG+TGG | - | chr8_1:59676004-59676023 | None:intergenic | 50.0% | |
| GAGAAGAGTGGTACTAAGGC+AGG | - | chr8_1:59676007-59676026 | None:intergenic | 50.0% | |
| TCCTCTTGAGAGAACCAGCT+TGG | + | chr8_1:59676236-59676255 | Msa1204160:CDS | 50.0% | |
| GAGAACCAGCTTGGCTTATC+TGG | + | chr8_1:59676245-59676264 | Msa1204160:CDS | 50.0% | |
| ACATGCAGCTGGCTAGTGTT+AGG | + | chr8_1:59676615-59676634 | Msa1204160:intron | 50.0% | |
| ! | TTCAGGTTTGCTCTTGCCCA+AGG | - | chr8_1:59676647-59676666 | None:intergenic | 50.0% |
| ! | GCCAAGCTGGTTCTCTCAAG+AGG | - | chr8_1:59676240-59676259 | None:intergenic | 55.0% |
| CTGGTCCAGATAAGCCAAGC+TGG | - | chr8_1:59676253-59676272 | None:intergenic | 55.0% | |
| GCTTGGCTTATCTGGACCAG+AGG | + | chr8_1:59676253-59676272 | Msa1204160:CDS | 55.0% | |
| GGCTTATCTGGACCAGAGGT+TGG | + | chr8_1:59676257-59676276 | Msa1204160:CDS | 55.0% | |
| ATGAGAACAGCGCTTGGCCA+TGG | - | chr8_1:59676283-59676302 | None:intergenic | 55.0% | |
| ! | ATGGCCAAGCGCTGTTCTCA+TGG | + | chr8_1:59676282-59676301 | Msa1204160:CDS | 55.0% |
| GGGTGTAATGGCTGGAGCTA+AGG | + | chr8_1:59676398-59676417 | Msa1204160:CDS | 55.0% | |
| GAGCTTGAGCAGTGGGATTC+AGG | - | chr8_1:59676664-59676683 | None:intergenic | 55.0% | |
| TGCATTGGAGGGTCGGTTGA+TGG | - | chr8_1:59676861-59676880 | None:intergenic | 55.0% | |
| ! | GCCAAGCTGGTTCTCTCAAG+AGG | - | chr8_1:59676240-59676259 | None:intergenic | 55.0% |
| CTGGTCCAGATAAGCCAAGC+TGG | - | chr8_1:59676253-59676272 | None:intergenic | 55.0% | |
| GCTTGGCTTATCTGGACCAG+AGG | + | chr8_1:59676253-59676272 | Msa1204160:CDS | 55.0% | |
| GGCTTATCTGGACCAGAGGT+TGG | + | chr8_1:59676257-59676276 | Msa1204160:CDS | 55.0% | |
| ATGAGAACAGCGCTTGGCCA+TGG | - | chr8_1:59676283-59676302 | None:intergenic | 55.0% | |
| ! | ATGGCCAAGCGCTGTTCTCA+TGG | + | chr8_1:59676282-59676301 | Msa1204160:CDS | 55.0% |
| GGGTGTAATGGCTGGAGCTA+AGG | + | chr8_1:59676398-59676417 | Msa1204160:CDS | 55.0% | |
| GAGCTTGAGCAGTGGGATTC+AGG | - | chr8_1:59676664-59676683 | None:intergenic | 55.0% | |
| TGCATTGGAGGGTCGGTTGA+TGG | - | chr8_1:59676861-59676880 | None:intergenic | 55.0% | |
| ! | TCTGGACCAGAGGTTGGCCA+TGG | + | chr8_1:59676263-59676282 | Msa1204160:CDS | 60.0% |
| GGACTCGGATGCACTGCACT+CGG | + | chr8_1:59676910-59676929 | Msa1204160:three_prime_UTR | 60.0% | |
| ! | TCTGGACCAGAGGTTGGCCA+TGG | + | chr8_1:59676263-59676282 | Msa1204160:CDS | 60.0% |
| GGACTCGGATGCACTGCACT+CGG | + | chr8_1:59676910-59676929 | Msa1204160:three_prime_UTR | 60.0% | |
| GCTTGGCCATGGCCAACCTC+TGG | - | chr8_1:59676272-59676291 | None:intergenic | 65.0% | |
| GCTTGGCCATGGCCAACCTC+TGG | - | chr8_1:59676272-59676291 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 59675964 | 59677084 | 59675964 | ID=Msa1204160;Name=Msa1204160 |
| chr8_1 | mRNA | 59675964 | 59677084 | 59675964 | ID=Msa1204160-mRNA-1;Parent=Msa1204160;Name=Msa1204160-mRNA-1;_AED=0.16;_eAED=0.16;_QI=243|1|1|1|1|1|4|201|107 |
| chr8_1 | exon | 59675964 | 59676303 | 59675964 | ID=Msa1204160-mRNA-1:exon:19267;Parent=Msa1204160-mRNA-1 |
| chr8_1 | exon | 59676397 | 59676458 | 59676397 | ID=Msa1204160-mRNA-1:exon:19268;Parent=Msa1204160-mRNA-1 |
| chr8_1 | exon | 59676623 | 59676698 | 59676623 | ID=Msa1204160-mRNA-1:exon:19269;Parent=Msa1204160-mRNA-1 |
| chr8_1 | exon | 59676795 | 59677084 | 59676795 | ID=Msa1204160-mRNA-1:exon:19270;Parent=Msa1204160-mRNA-1 |
| chr8_1 | five_prime_UTR | 59675964 | 59676206 | 59675964 | ID=Msa1204160-mRNA-1:five_prime_utr;Parent=Msa1204160-mRNA-1 |
| chr8_1 | CDS | 59676207 | 59676303 | 59676207 | ID=Msa1204160-mRNA-1:cds;Parent=Msa1204160-mRNA-1 |
| chr8_1 | CDS | 59676397 | 59676458 | 59676397 | ID=Msa1204160-mRNA-1:cds;Parent=Msa1204160-mRNA-1 |
| chr8_1 | CDS | 59676623 | 59676698 | 59676623 | ID=Msa1204160-mRNA-1:cds;Parent=Msa1204160-mRNA-1 |
| chr8_1 | CDS | 59676795 | 59676883 | 59676795 | ID=Msa1204160-mRNA-1:cds;Parent=Msa1204160-mRNA-1 |
| chr8_1 | three_prime_UTR | 59676884 | 59677084 | 59676884 | ID=Msa1204160-mRNA-1:three_prime_utr;Parent=Msa1204160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
