Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1239780 | XP_013445005.3 | 96.667 | 330 | 10 | 1 | 1 | 329 | 1 | 330 | 0.0 | 655 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1239780 | sp|Q42948|DAPA_TOBAC | 66.071 | 336 | 103 | 2 | 5 | 329 | 24 | 359 | 1.41e-167 | 473 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1239780 | A0A396GKP7 | 96.667 | 330 | 10 | 1 | 1 | 329 | 1 | 330 | 0.0 | 655 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0020390 | Msa1239780 | 0.822963 | 1.787558e-53 | -8.615850e-47 |
| Msa0020410 | Msa1239780 | 0.812291 | 4.565845e-51 | -8.615850e-47 |
| Msa0044000 | Msa1239780 | 0.815147 | 1.072797e-51 | -8.615850e-47 |
| Msa0061500 | Msa1239780 | 0.805751 | 1.147281e-49 | -8.615850e-47 |
| Msa0071250 | Msa1239780 | 0.801960 | 7.034468e-49 | -8.615850e-47 |
| Msa0090550 | Msa1239780 | 0.808722 | 2.692774e-50 | -8.615850e-47 |
| Msa0090570 | Msa1239780 | 0.804607 | 1.992180e-49 | -8.615850e-47 |
| Msa0118540 | Msa1239780 | 0.806987 | 6.298413e-50 | -8.615850e-47 |
| Msa0604290 | Msa1239780 | 0.827191 | 1.792702e-54 | -8.615850e-47 |
| Msa0613340 | Msa1239780 | 0.810607 | 1.059913e-50 | -8.615850e-47 |
| Msa0638540 | Msa1239780 | 0.813555 | 2.412314e-51 | -8.615850e-47 |
| Msa0657120 | Msa1239780 | 0.802587 | 5.227304e-49 | -8.615850e-47 |
| Msa0701100 | Msa1239780 | 0.810390 | 1.180219e-50 | -8.615850e-47 |
| Msa0705990 | Msa1239780 | 0.837019 | 6.653651e-57 | -8.615850e-47 |
| Msa0709120 | Msa1239780 | 0.815337 | 9.734493e-52 | -8.615850e-47 |
| Msa0742150 | Msa1239780 | 0.801034 | 1.089146e-48 | -8.615850e-47 |
| Msa0746170 | Msa1239780 | 0.812134 | 4.938528e-51 | -8.615850e-47 |
| Msa0746210 | Msa1239780 | 0.812162 | 4.870281e-51 | -8.615850e-47 |
| Msa0767370 | Msa1239780 | 0.816132 | 6.472334e-52 | -8.615850e-47 |
| Msa0139670 | Msa1239780 | 0.818856 | 1.575520e-52 | -8.615850e-47 |
| Msa0142500 | Msa1239780 | 0.812699 | 3.718291e-51 | -8.615850e-47 |
| Msa0150230 | Msa1239780 | 0.800115 | 1.676449e-48 | -8.615850e-47 |
| Msa0152560 | Msa1239780 | 0.821056 | 4.945448e-53 | -8.615850e-47 |
| Msa0160960 | Msa1239780 | 0.803114 | 4.067939e-49 | -8.615850e-47 |
| Msa0183850 | Msa1239780 | 0.806175 | 9.347142e-50 | -8.615850e-47 |
| Msa0183870 | Msa1239780 | 0.800605 | 1.332386e-48 | -8.615850e-47 |
| Msa1239780 | Msa1250110 | 0.814726 | 1.330358e-51 | -8.615850e-47 |
| Msa1239780 | Msa1250730 | 0.805451 | 1.326390e-49 | -8.615850e-47 |
| Msa1239780 | Msa1279480 | 0.800674 | 1.290108e-48 | -8.615850e-47 |
| Msa1239780 | Msa1291450 | 0.803026 | 4.241981e-49 | -8.615850e-47 |
| Msa1239780 | Msa1310800 | -0.848154 | 7.345474e-60 | -8.615850e-47 |
| Msa1239780 | Msa1316360 | 0.804939 | 1.697808e-49 | -8.615850e-47 |
| Msa1239780 | Msa1355890 | 0.812013 | 5.248182e-51 | -8.615850e-47 |
| Msa1239780 | Msa1382020 | 0.805073 | 1.591950e-49 | -8.615850e-47 |
| Msa1239780 | Msa1396400 | -0.810017 | 1.420470e-50 | -8.615850e-47 |
| Msa1239780 | Msa1430130 | 0.805824 | 1.107586e-49 | -8.615850e-47 |
| Msa1239780 | Msa1436600 | 0.803554 | 3.298300e-49 | -8.615850e-47 |
| Msa1239780 | Msa1454570 | 0.816110 | 6.545851e-52 | -8.615850e-47 |
| Msa1239780 | Msa1458090 | 0.818721 | 1.690549e-52 | -8.615850e-47 |
| Msa1239780 | Msa1460750 | 0.805281 | 1.440240e-49 | -8.615850e-47 |
| Msa0371950 | Msa1239780 | 0.813226 | 2.848840e-51 | -8.615850e-47 |
| Msa0379690 | Msa1239780 | 0.803417 | 3.521665e-49 | -8.615850e-47 |
| Msa0388730 | Msa1239780 | 0.830016 | 3.722905e-55 | -8.615850e-47 |
| Msa0389210 | Msa1239780 | 0.831703 | 1.436643e-55 | -8.615850e-47 |
| Msa0403770 | Msa1239780 | 0.826038 | 3.378491e-54 | -8.615850e-47 |
| Msa0426930 | Msa1239780 | 0.806277 | 8.895959e-50 | -8.615850e-47 |
| Msa0481280 | Msa1239780 | 0.820051 | 8.411509e-53 | -8.615850e-47 |
| Msa0994370 | Msa1239780 | 0.810890 | 9.203969e-51 | -8.615850e-47 |
| Msa1081790 | Msa1239780 | -0.807739 | 4.363297e-50 | -8.615850e-47 |
| Msa1093100 | Msa1239780 | 0.808801 | 2.591239e-50 | -8.615850e-47 |
| Msa1096070 | Msa1239780 | 0.800020 | 1.753268e-48 | -8.615850e-47 |
| Msa0321690 | Msa1239780 | 0.812672 | 3.768076e-51 | -8.615850e-47 |
| Msa0335060 | Msa1239780 | 0.804187 | 2.436279e-49 | -8.615850e-47 |
| Msa1109680 | Msa1239780 | 0.809862 | 1.533990e-50 | -8.615850e-47 |
| Msa1144040 | Msa1239780 | 0.820211 | 7.731191e-53 | -8.615850e-47 |
| Msa1166090 | Msa1239780 | -0.811391 | 7.166377e-51 | -8.615850e-47 |
| Msa1206270 | Msa1239780 | 0.822356 | 2.474837e-53 | -8.615850e-47 |
| Msa1206290 | Msa1239780 | 0.811962 | 5.385089e-51 | -8.615850e-47 |
| Msa1218580 | Msa1239780 | 0.806246 | 9.028420e-50 | -8.615850e-47 |
| Msa1221330 | Msa1239780 | 0.823170 | 1.599648e-53 | -8.615850e-47 |
| Msa0510840 | Msa1239780 | 0.813409 | 2.597500e-51 | -8.615850e-47 |
| Msa0534870 | Msa1239780 | 0.807324 | 5.344289e-50 | -8.615850e-47 |
| Msa0542560 | Msa1239780 | 0.807278 | 5.465510e-50 | -8.615850e-47 |
| Msa0849030 | Msa1239780 | 0.803837 | 2.881591e-49 | -8.615850e-47 |
| Msa0880810 | Msa1239780 | 0.806179 | 9.325444e-50 | -8.615850e-47 |
| Msa0888260 | Msa1239780 | 0.815054 | 1.125062e-51 | -8.615850e-47 |
| Msa0960390 | Msa1239780 | 0.801538 | 8.589075e-49 | -8.615850e-47 |
| Msa0974950 | Msa1239780 | 0.835121 | 2.017936e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1239780 | MtrunA17_Chr8g0351581 | 96.667 | 330 | 10 | 1 | 1 | 329 | 1 | 330 | 0.0 | 655 |
| Msa1239780 | MtrunA17_Chr8g0351611 | 85.359 | 362 | 20 | 2 | 1 | 329 | 1 | 362 | 0.0 | 624 |
| Msa1239780 | MtrunA17_Chr8g0351631 | 76.699 | 309 | 71 | 1 | 22 | 329 | 132 | 440 | 0.0 | 511 |
| Msa1239780 | MtrunA17_Chr1g0195781 | 70.645 | 310 | 90 | 1 | 21 | 329 | 57 | 366 | 9.57e-166 | 466 |
| Msa1239780 | MtrunA17_Chr7g0245941 | 69.677 | 310 | 93 | 1 | 21 | 329 | 57 | 366 | 2.27e-163 | 460 |
| Msa1239780 | MtrunA17_Chr8g0351641 | 70.550 | 309 | 85 | 2 | 22 | 329 | 4 | 307 | 1.08e-160 | 451 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1239780 | AT2G45440.1 | 68.153 | 314 | 99 | 1 | 17 | 329 | 52 | 365 | 4.39e-163 | 459 |
| Msa1239780 | AT3G60880.1 | 67.742 | 310 | 99 | 1 | 21 | 329 | 55 | 364 | 2.15e-161 | 455 |
| Msa1239780 | AT3G60880.2 | 67.742 | 310 | 99 | 1 | 21 | 329 | 56 | 365 | 2.33e-161 | 455 |
Find 104 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTTCACACCAACAAAATT+TGG | 0.159213 | 8_2:+21709955 | None:intergenic |
| GGCGACAAAGTTAAAGTTAT+TGG | 0.161210 | 8_2:-21710210 | Msa1239780:CDS |
| AAGGGTAGGGTTTGTGAATT+TGG | 0.194321 | 8_2:-21709617 | Msa1239780:CDS |
| GTTCATCCCATGTCATTAAT+TGG | 0.198004 | 8_2:+21710268 | None:intergenic |
| AACATGTTCATCAGTGAAAA+TGG | 0.225025 | 8_2:+21711590 | None:intergenic |
| TCCTAGTGTAATTGAAATAT+TGG | 0.255034 | 8_2:-21709986 | Msa1239780:CDS |
| TTGAAAACTGATTCTATTAG+AGG | 0.278296 | 8_2:-21711569 | Msa1239780:CDS |
| TCAATCTGTTGCAAGCAATT+TGG | 0.279572 | 8_2:-21709824 | Msa1239780:CDS |
| AGCTTATGACTTTGTTTGAT+TGG | 0.288548 | 8_2:-21709744 | Msa1239780:CDS |
| TCATTCGTTCAGGTCGTATT+TGG | 0.298249 | 8_2:-21711767 | Msa1239780:five_prime_UTR |
| GTTGCAAGCAATTTGGTTCC+AGG | 0.320740 | 8_2:-21709817 | Msa1239780:CDS |
| GTTGAAGGTATTCTTGTTGC+TGG | 0.326426 | 8_2:-21710306 | Msa1239780:CDS |
| CACAATCCCATCTAGCTTCA+TGG | 0.328251 | 8_2:+21709860 | None:intergenic |
| GGTACATTGTATATGATGAT+AGG | 0.356794 | 8_2:+21710033 | None:intergenic |
| ATTCTTGTTGCTGGCTCAAC+TGG | 0.359387 | 8_2:-21710297 | Msa1239780:CDS |
| AACTCTACTACAACTGTAGA+AGG | 0.363022 | 8_2:-21709200 | Msa1239780:three_prime_UTR |
| GAAAGGTAAAACCGGTGAAT+TGG | 0.363505 | 8_2:+21711544 | None:intergenic |
| TTAATGAGGGAACTCATGTT+TGG | 0.364097 | 8_2:-21709793 | Msa1239780:CDS |
| TTATTCTTACTCATTCGTTC+AGG | 0.366081 | 8_2:-21711777 | None:intergenic |
| ACTTAAGCCATGAAGCTAGA+TGG | 0.366550 | 8_2:-21709867 | Msa1239780:CDS |
| CTACCCTTTGTTCCAAAGTA+AGG | 0.368670 | 8_2:+21709632 | None:intergenic |
| AATACTGCTCTTGCTCAACT+TGG | 0.370399 | 8_2:-21709691 | Msa1239780:CDS |
| CTTCATATAAACCCTTACTA+TGG | 0.380177 | 8_2:-21710111 | Msa1239780:CDS |
| TAATGAGGGAACTCATGTTT+GGG | 0.380842 | 8_2:-21709792 | Msa1239780:CDS |
| GTGAAAATGTACACAGATAA+AGG | 0.383039 | 8_2:-21709913 | Msa1239780:CDS |
| GCTCACACAGTTAATTGTTT+CGG | 0.387170 | 8_2:-21710231 | Msa1239780:CDS |
| TGTGAATTTGGTGAAGGAAA+TGG | 0.399427 | 8_2:-21709605 | Msa1239780:CDS |
| TATAATAGTTTGCTTCCTAT+AGG | 0.400037 | 8_2:-21710057 | Msa1239780:CDS |
| GTTTGATTCAAATGAATTTG+AGG | 0.405239 | 8_2:+21711678 | None:intergenic |
| AGTGACACTATTACATGATC+TGG | 0.415637 | 8_2:+21709303 | None:intergenic |
| TCCATATGTACCCCTTACTT+TGG | 0.426197 | 8_2:-21709644 | Msa1239780:CDS |
| ATACTGCTCTTGCTCAACTT+GGG | 0.427623 | 8_2:-21709690 | Msa1239780:CDS |
| TTCAAATGAATTTGAGGAGA+AGG | 0.433919 | 8_2:+21711684 | None:intergenic |
| GTGAATTTGGTGAAGGAAAT+GGG | 0.434090 | 8_2:-21709604 | Msa1239780:CDS |
| AAAATATTGTTAAAATATAG+TGG | 0.434094 | 8_2:-21709244 | Msa1239780:three_prime_UTR |
| AAAGGTAAAACCGGTGAATT+GGG | 0.443005 | 8_2:+21711545 | None:intergenic |
| AGAGCAGTATTCAAAGCAAT+TGG | 0.450656 | 8_2:+21709703 | None:intergenic |
| TCCAAAGTAAGGGGTACATA+TGG | 0.451344 | 8_2:+21709643 | None:intergenic |
| ATAAGCTTTGAATTCAATGT+AGG | 0.451843 | 8_2:+21709760 | None:intergenic |
| GTTAAAGTTATTGGTAATGC+AGG | 0.453786 | 8_2:-21710201 | Msa1239780:CDS |
| GTATTCAAAGCAATTGGACT+TGG | 0.455101 | 8_2:+21709709 | None:intergenic |
| GTACTGTATTTACAGGAAAT+CGG | 0.460103 | 8_2:-21710445 | Msa1239780:intron |
| ACCCCTTACTTTGGAACAAA+GGG | 0.468369 | 8_2:-21709635 | Msa1239780:CDS |
| CAGATTGCAAATGGTGTTGA+AGG | 0.470393 | 8_2:-21710321 | Msa1239780:CDS |
| AGATGGGATTGTGGGGCTGT+TGG | 0.472579 | 8_2:-21709850 | Msa1239780:CDS |
| TCATATACAATGTACCTTCA+AGG | 0.478777 | 8_2:-21710026 | Msa1239780:CDS |
| ACCGAGCGAGGTTTCGCCGT+TGG | 0.479713 | 8_2:-21710147 | Msa1239780:CDS |
| ACATATGGAAGCCTGAAAAC+AGG | 0.481922 | 8_2:+21709658 | None:intergenic |
| CTTAAGCCATGAAGCTAGAT+GGG | 0.484577 | 8_2:-21709866 | Msa1239780:CDS |
| ATATAATAGTAACAAGAGAC+AGG | 0.495836 | 8_2:+21711720 | None:intergenic |
| ATGAAGCTAGATGGGATTGT+GGG | 0.500054 | 8_2:-21709858 | Msa1239780:CDS |
| GCGAGGTTTCGCCGTTGGAA+TGG | 0.500080 | 8_2:-21710142 | Msa1239780:CDS |
| CTGCTGGTGAAAGGTAAAAC+CGG | 0.500692 | 8_2:+21711536 | None:intergenic |
| TATATGATGATAGGGCCTAT+AGG | 0.500953 | 8_2:+21710042 | None:intergenic |
| TACCCTTTGTTCCAAAGTAA+GGG | 0.503815 | 8_2:+21709633 | None:intergenic |
| AACCTCACATGCAGGTTTGG+TGG | 0.506544 | 8_2:-21710085 | Msa1239780:CDS |
| TATTTACAGGAAATCGGTTG+AGG | 0.508091 | 8_2:-21710439 | Msa1239780:intron |
| ATATCTTGACCACTCCTTGA+AGG | 0.511277 | 8_2:+21710012 | None:intergenic |
| ATTTGGTTCCAGGCTTAATG+AGG | 0.513515 | 8_2:-21709807 | Msa1239780:CDS |
| ATGAGTTCCCTCATTAAGCC+TGG | 0.516354 | 8_2:+21709799 | None:intergenic |
| AGGTAAGTATGGAGTCTTAA+CGG | 0.522449 | 8_2:+21710389 | None:intergenic |
| TCTTGAAGCATATGATAACT+TGG | 0.522761 | 8_2:-21710352 | Msa1239780:CDS |
| AAAAGATGTTCAAGTTCTTG+AGG | 0.527096 | 8_2:-21709560 | Msa1239780:CDS |
| CATGAAGCTAGATGGGATTG+TGG | 0.531575 | 8_2:-21709859 | Msa1239780:CDS |
| GTACATTGTATATGATGATA+GGG | 0.536701 | 8_2:+21710034 | None:intergenic |
| AATGTTAACCTGCTGGTGAA+AGG | 0.537482 | 8_2:+21711527 | None:intergenic |
| GCAATAAACGCAACCGAGCG+AGG | 0.539688 | 8_2:-21710159 | Msa1239780:CDS |
| TACCCCTTACTTTGGAACAA+AGG | 0.540034 | 8_2:-21709636 | Msa1239780:CDS |
| TTACTTTGGAACAAAGGGTA+GGG | 0.543530 | 8_2:-21709630 | Msa1239780:CDS |
| ATGTAGTATCTCTCTTATGA+AGG | 0.547543 | 8_2:+21709405 | None:intergenic |
| TATTAGAGGACCCAATTCAC+CGG | 0.551737 | 8_2:-21711555 | Msa1239780:CDS |
| TTCAGGTCGTATTTGGTGAG+TGG | 0.552536 | 8_2:-21711760 | Msa1239780:five_prime_UTR |
| TACTGCTCTTGCTCAACTTG+GGG | 0.558032 | 8_2:-21709689 | Msa1239780:CDS |
| AGGGTTTGTGAATTTGGTGA+AGG | 0.558889 | 8_2:-21709611 | Msa1239780:CDS |
| ATGAATTTGAGGAGAAGGAA+AGG | 0.568914 | 8_2:+21711689 | None:intergenic |
| GTTGCTGGCTCAACTGGTGA+AGG | 0.569872 | 8_2:-21710291 | Msa1239780:CDS |
| ATTTGGTGAAGGAAATGGGC+AGG | 0.570366 | 8_2:-21709600 | Msa1239780:CDS |
| GTGAAGGCCAATTAATGACA+TGG | 0.574512 | 8_2:-21710275 | Msa1239780:CDS |
| AGCCACCAAACCTGCATGTG+AGG | 0.576182 | 8_2:+21710083 | None:intergenic |
| GTGAACATACAGATTGCAAA+TGG | 0.577102 | 8_2:-21710330 | Msa1239780:CDS |
| AGATAAAGGAATTGTTGTGT+GGG | 0.580604 | 8_2:-21709899 | Msa1239780:CDS |
| AATATTTCAATTACACTAGG+AGG | 0.580969 | 8_2:+21709988 | None:intergenic |
| CTTACTTTGGAACAAAGGGT+AGG | 0.581239 | 8_2:-21709631 | Msa1239780:CDS |
| GCCAATATTTCAATTACACT+AGG | 0.594176 | 8_2:+21709985 | None:intergenic |
| GTTGGTGTGAAAGAGTGTGT+GGG | 0.596538 | 8_2:-21709946 | Msa1239780:CDS |
| AATGAGGGAACTCATGTTTG+GGG | 0.597288 | 8_2:-21709791 | Msa1239780:CDS |
| CAGATAAAGGAATTGTTGTG+TGG | 0.598548 | 8_2:-21709900 | Msa1239780:CDS |
| TCCAACGGCGAAACCTCGCT+CGG | 0.600152 | 8_2:+21710146 | None:intergenic |
| TGTTGGTGTGAAAGAGTGTG+TGG | 0.601574 | 8_2:-21709947 | Msa1239780:CDS |
| ACCCTTTGTTCCAAAGTAAG+GGG | 0.603597 | 8_2:+21709634 | None:intergenic |
| AACGTCTCAAGTATCCGTGT+TGG | 0.608523 | 8_2:+21709445 | None:intergenic |
| TTTGGTTCCAGGCTTAATGA+GGG | 0.613924 | 8_2:-21709806 | Msa1239780:CDS |
| AGAGTGTGTGGGAACTGAGA+GGG | 0.629024 | 8_2:-21709935 | Msa1239780:CDS |
| GATAAAGGAATTGTTGTGTG+GGG | 0.629716 | 8_2:-21709898 | Msa1239780:CDS |
| TACAATGTACCTTCAAGGAG+TGG | 0.632280 | 8_2:-21710021 | Msa1239780:CDS |
| AAGTGCAGCATCCATTCCAA+CGG | 0.650931 | 8_2:+21710131 | None:intergenic |
| ATGAGGGAACTCATGTTTGG+GGG | 0.657956 | 8_2:-21709790 | Msa1239780:CDS |
| TTATGCTTTGAAAGCCAACA+CGG | 0.660747 | 8_2:-21709459 | Msa1239780:three_prime_UTR |
| AAGACTCCATACTTACCTAG+TGG | 0.662580 | 8_2:-21710384 | Msa1239780:CDS |
| AAGAGTGTGTGGGAACTGAG+AGG | 0.690034 | 8_2:-21709936 | Msa1239780:CDS |
| TGAAGCTAGATGGGATTGTG+GGG | 0.696668 | 8_2:-21709857 | Msa1239780:CDS |
| TGAAGGCCAATTAATGACAT+GGG | 0.703308 | 8_2:-21710274 | Msa1239780:CDS |
| TATAATAGTAACAAGAGACA+GGG | 0.727416 | 8_2:+21711721 | None:intergenic |
| TAAGTATGGAGTCTTAACGG+CGG | 0.771162 | 8_2:+21710392 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACATTATTGTATAAATT+TGG | + | chr8_2:21710436-21710455 | None:intergenic | 10.0% |
| !! | AAAATATTGTTAAAATATAG+TGG | - | chr8_2:21711725-21711744 | Msa1239780:five_prime_UTR | 10.0% |
| !! | ATAAATATTAAAGATCTACA+AGG | + | chr8_2:21709586-21709605 | None:intergenic | 15.0% |
| !! | ATATATCTATCGAATTTAAT+AGG | + | chr8_2:21710373-21710392 | None:intergenic | 15.0% |
| !! | AAAAATCATGGATCATAAAT+AGG | - | chr8_2:21710076-21710095 | Msa1239780:CDS | 20.0% |
| !! | TCATTAAACTAAGCAAAATT+TGG | + | chr8_2:21710196-21710215 | None:intergenic | 20.0% |
| ! | TATAATAGTAACAAGAGACA+GGG | + | chr8_2:21709251-21709270 | None:intergenic | 25.0% |
| ! | ATATAATAGTAACAAGAGAC+AGG | + | chr8_2:21709252-21709271 | None:intergenic | 25.0% |
| ! | GTTTGATTCAAATGAATTTG+AGG | + | chr8_2:21709294-21709313 | None:intergenic | 25.0% |
| !! | TTTTAAACAGCTTCAATTGT+TGG | - | chr8_2:21709317-21709336 | Msa1239780:three_prime_UTR | 25.0% |
| !! | TTGAAAACTGATTCTATTAG+AGG | - | chr8_2:21709400-21709419 | Msa1239780:three_prime_UTR | 25.0% |
| ! | GTAGTTACTGAACTAAATAT+AGG | - | chr8_2:21709659-21709678 | Msa1239780:CDS | 25.0% |
| !!! | ATTCTTTAACTTGTTTCCTT+AGG | - | chr8_2:21709780-21709799 | Msa1239780:CDS | 25.0% |
| ! | ATTCAAATTCGTCTTATATC+AGG | + | chr8_2:21709822-21709841 | None:intergenic | 25.0% |
| !! | CATGATTTTTACACAACATA+TGG | + | chr8_2:21710066-21710085 | None:intergenic | 25.0% |
| ! | CATATGTTGTGTAAAAATCA+TGG | - | chr8_2:21710064-21710083 | Msa1239780:CDS | 25.0% |
| ! | AATTCGATAGATATATTTGC+AGG | - | chr8_2:21710377-21710396 | Msa1239780:CDS | 25.0% |
| !!! | ATCATCTTTTTAAGCTTTTG+TGG | - | chr8_2:21710480-21710499 | Msa1239780:intron | 25.0% |
| !!! | TTTTTAAGCTTTTGTGGTAA+TGG | - | chr8_2:21710486-21710505 | Msa1239780:intron | 25.0% |
| !! | TTTTAAGCTTTTGTGGTAAT+GGG | - | chr8_2:21710487-21710506 | Msa1239780:intron | 25.0% |
| ! | TTTATGTGTACTGTATTTAC+AGG | - | chr8_2:21710517-21710536 | Msa1239780:intron | 25.0% |
| !!! | TATAATAGTTTGCTTCCTAT+AGG | - | chr8_2:21710912-21710931 | Msa1239780:intron | 25.0% |
| ! | GTACATTGTATATGATGATA+GGG | + | chr8_2:21710938-21710957 | None:intergenic | 25.0% |
| ! | AATATTTCAATTACACTAGG+AGG | + | chr8_2:21710984-21711003 | None:intergenic | 25.0% |
| ! | TCCTAGTGTAATTGAAATAT+TGG | - | chr8_2:21710983-21711002 | Msa1239780:intron | 25.0% |
| !!! | ATAAGCTTTGAATTCAATGT+AGG | + | chr8_2:21711212-21711231 | None:intergenic | 25.0% |
| !! | GATGATGATTTTATCATAGT+CGG | - | chr8_2:21711431-21711450 | Msa1239780:intron | 25.0% |
| !!! | TATTTTATGTTAGTCTGTGT+TGG | - | chr8_2:21711485-21711504 | Msa1239780:intron | 25.0% |
| !! | TAGCTTTTATATCCTTCATA+AGG | - | chr8_2:21711624-21711643 | Msa1239780:five_prime_UTR | 25.0% |
| !! | AGCTTTTATATCCTTCATAA+GGG | - | chr8_2:21711625-21711644 | Msa1239780:five_prime_UTR | 25.0% |
| TTCAAATGAATTTGAGGAGA+AGG | + | chr8_2:21709288-21709307 | None:intergenic | 30.0% | |
| AACATGTTCATCAGTGAAAA+TGG | + | chr8_2:21709382-21709401 | None:intergenic | 30.0% | |
| TATGAAAAATGTTAACCTGC+TGG | + | chr8_2:21709452-21709471 | None:intergenic | 30.0% | |
| AAATGTTAGCATGTGTCATA+AGG | - | chr8_2:21709636-21709655 | Msa1239780:CDS | 30.0% | |
| AATGTTAGCATGTGTCATAA+GGG | - | chr8_2:21709637-21709656 | Msa1239780:CDS | 30.0% | |
| TAGGAAAAAGTTTAGCATCT+TGG | - | chr8_2:21709678-21709697 | Msa1239780:CDS | 30.0% | |
| GTCGTTGAATTAAGATCAAA+CGG | + | chr8_2:21709969-21709988 | None:intergenic | 30.0% | |
| ! | CAAGTCTAAGACAAGTAAAT+TGG | - | chr8_2:21710118-21710137 | Msa1239780:CDS | 30.0% |
| ATAGCTACAACTACAAGATT+TGG | + | chr8_2:21710166-21710185 | None:intergenic | 30.0% | |
| GTACTGTATTTACAGGAAAT+CGG | - | chr8_2:21710524-21710543 | Msa1239780:intron | 30.0% | |
| ! | ATTTTTCCACTAGGTAAGTA+TGG | + | chr8_2:21710594-21710613 | None:intergenic | 30.0% |
| !! | TCAAGATCTATTTTTCCACT+AGG | + | chr8_2:21710603-21710622 | None:intergenic | 30.0% |
| TCTTGAAGCATATGATAACT+TGG | - | chr8_2:21710617-21710636 | Msa1239780:intron | 30.0% | |
| !! | GTTAAAGTTATTGGTAATGC+AGG | - | chr8_2:21710768-21710787 | Msa1239780:intron | 30.0% |
| CTTCATATAAACCCTTACTA+TGG | - | chr8_2:21710858-21710877 | Msa1239780:intron | 30.0% | |
| GGTACATTGTATATGATGAT+AGG | + | chr8_2:21710939-21710958 | None:intergenic | 30.0% | |
| TCATATACAATGTACCTTCA+AGG | - | chr8_2:21710943-21710962 | Msa1239780:intron | 30.0% | |
| GCCAATATTTCAATTACACT+AGG | + | chr8_2:21710987-21711006 | None:intergenic | 30.0% | |
| ! | GCTCAAAATCCAAATTTTGT+TGG | - | chr8_2:21711005-21711024 | Msa1239780:intron | 30.0% |
| TCTTTCACACCAACAAAATT+TGG | + | chr8_2:21711017-21711036 | None:intergenic | 30.0% | |
| GTGAAAATGTACACAGATAA+AGG | - | chr8_2:21711056-21711075 | Msa1239780:intron | 30.0% | |
| AGATAAAGGAATTGTTGTGT+GGG | - | chr8_2:21711070-21711089 | Msa1239780:intron | 30.0% | |
| ! | AGCTTATGACTTTGTTTGAT+TGG | - | chr8_2:21711225-21711244 | Msa1239780:intron | 30.0% |
| ! | AAAAGATGTTCAAGTTCTTG+AGG | - | chr8_2:21711409-21711428 | Msa1239780:intron | 30.0% |
| ATGTAGTATCTCTCTTATGA+AGG | + | chr8_2:21711567-21711586 | None:intergenic | 30.0% | |
| !!! | AACTTTTGAAACCCTTATGA+AGG | + | chr8_2:21711639-21711658 | None:intergenic | 30.0% |
| ATGAATTTGAGGAGAAGGAA+AGG | + | chr8_2:21709283-21709302 | None:intergenic | 35.0% | |
| AAAGGTAAAACCGGTGAATT+GGG | + | chr8_2:21709427-21709446 | None:intergenic | 35.0% | |
| AGTCTGCAGTTTACTTTGTT+TGG | - | chr8_2:21709488-21709507 | Msa1239780:three_prime_UTR | 35.0% | |
| !! | TAACTTGTTTCCTTAGGACA+CGG | - | chr8_2:21709786-21709805 | Msa1239780:CDS | 35.0% |
| TTACGCAGACAATTCATCAA+TGG | - | chr8_2:21709859-21709878 | Msa1239780:CDS | 35.0% | |
| AAGCTTACGGTATGTGTTTA+TGG | + | chr8_2:21710236-21710255 | None:intergenic | 35.0% | |
| GATAGATATATTTGCAGGAC+TGG | - | chr8_2:21710382-21710401 | Msa1239780:CDS | 35.0% | |
| TATTTACAGGAAATCGGTTG+AGG | - | chr8_2:21710530-21710549 | Msa1239780:intron | 35.0% | |
| AGGTAAGTATGGAGTCTTAA+CGG | + | chr8_2:21710583-21710602 | None:intergenic | 35.0% | |
| GTGAACATACAGATTGCAAA+TGG | - | chr8_2:21710639-21710658 | Msa1239780:intron | 35.0% | |
| TGAAGGCCAATTAATGACAT+GGG | - | chr8_2:21710695-21710714 | Msa1239780:intron | 35.0% | |
| GTTCATCCCATGTCATTAAT+TGG | + | chr8_2:21710704-21710723 | None:intergenic | 35.0% | |
| GCTCACACAGTTAATTGTTT+CGG | - | chr8_2:21710738-21710757 | Msa1239780:intron | 35.0% | |
| GGCGACAAAGTTAAAGTTAT+TGG | - | chr8_2:21710759-21710778 | Msa1239780:intron | 35.0% | |
| ! | GTGAGGTTTTTCCATAGTAA+GGG | + | chr8_2:21710872-21710891 | None:intergenic | 35.0% |
| ! | TGTGAGGTTTTTCCATAGTA+AGG | + | chr8_2:21710873-21710892 | None:intergenic | 35.0% |
| TATATGATGATAGGGCCTAT+AGG | + | chr8_2:21710930-21710949 | None:intergenic | 35.0% | |
| CAGATAAAGGAATTGTTGTG+TGG | - | chr8_2:21711069-21711088 | Msa1239780:intron | 35.0% | |
| GATAAAGGAATTGTTGTGTG+GGG | - | chr8_2:21711071-21711090 | Msa1239780:intron | 35.0% | |
| TCAATCTGTTGCAAGCAATT+TGG | - | chr8_2:21711145-21711164 | Msa1239780:intron | 35.0% | |
| TTAATGAGGGAACTCATGTT+TGG | - | chr8_2:21711176-21711195 | Msa1239780:intron | 35.0% | |
| TAATGAGGGAACTCATGTTT+GGG | - | chr8_2:21711177-21711196 | Msa1239780:intron | 35.0% | |
| GTATTCAAAGCAATTGGACT+TGG | + | chr8_2:21711263-21711282 | None:intergenic | 35.0% | |
| AGAGCAGTATTCAAAGCAAT+TGG | + | chr8_2:21711269-21711288 | None:intergenic | 35.0% | |
| TACCCTTTGTTCCAAAGTAA+GGG | + | chr8_2:21711339-21711358 | None:intergenic | 35.0% | |
| !! | TTACTTTGGAACAAAGGGTA+GGG | - | chr8_2:21711339-21711358 | Msa1239780:intron | 35.0% |
| ! | TGTGAATTTGGTGAAGGAAA+TGG | - | chr8_2:21711364-21711383 | Msa1239780:intron | 35.0% |
| ! | GTGAATTTGGTGAAGGAAAT+GGG | - | chr8_2:21711365-21711384 | Msa1239780:intron | 35.0% |
| !! | TTATGCTTTGAAAGCCAACA+CGG | - | chr8_2:21711510-21711529 | Msa1239780:intron | 35.0% |
| AGTGACACTATTACATGATC+TGG | + | chr8_2:21711669-21711688 | None:intergenic | 35.0% | |
| AACTCTACTACAACTGTAGA+AGG | - | chr8_2:21711769-21711788 | Msa1239780:five_prime_UTR | 35.0% | |
| TCATTCGTTCAGGTCGTATT+TGG | - | chr8_2:21709202-21709221 | Msa1239780:three_prime_UTR | 40.0% | |
| TATTAGAGGACCCAATTCAC+CGG | - | chr8_2:21709414-21709433 | Msa1239780:three_prime_UTR | 40.0% | |
| GAAAGGTAAAACCGGTGAAT+TGG | + | chr8_2:21709428-21709447 | None:intergenic | 40.0% | |
| AATGTTAACCTGCTGGTGAA+AGG | + | chr8_2:21709445-21709464 | None:intergenic | 40.0% | |
| ! | AACTTGTTTCCTTAGGACAC+GGG | - | chr8_2:21709787-21709806 | Msa1239780:CDS | 40.0% |
| ! | CAGCTGTTTGTTGAAGCTTA+CGG | + | chr8_2:21710249-21710268 | None:intergenic | 40.0% |
| TAAGTATGGAGTCTTAACGG+CGG | + | chr8_2:21710580-21710599 | None:intergenic | 40.0% | |
| AAGACTCCATACTTACCTAG+TGG | - | chr8_2:21710585-21710604 | Msa1239780:intron | 40.0% | |
| ! | CAGATTGCAAATGGTGTTGA+AGG | - | chr8_2:21710648-21710667 | Msa1239780:intron | 40.0% |
| !! | GTTGAAGGTATTCTTGTTGC+TGG | - | chr8_2:21710663-21710682 | Msa1239780:intron | 40.0% |
| GTGAAGGCCAATTAATGACA+TGG | - | chr8_2:21710694-21710713 | Msa1239780:intron | 40.0% | |
| TATGGAAAAACCTCACATGC+AGG | - | chr8_2:21710876-21710895 | Msa1239780:intron | 40.0% | |
| AAAAACCTCACATGCAGGTT+TGG | - | chr8_2:21710881-21710900 | Msa1239780:intron | 40.0% | |
| TACAATGTACCTTCAAGGAG+TGG | - | chr8_2:21710948-21710967 | Msa1239780:intron | 40.0% | |
| ATATCTTGACCACTCCTTGA+AGG | + | chr8_2:21710960-21710979 | None:intergenic | 40.0% | |
| ACTTAAGCCATGAAGCTAGA+TGG | - | chr8_2:21711102-21711121 | Msa1239780:intron | 40.0% | |
| CTTAAGCCATGAAGCTAGAT+GGG | - | chr8_2:21711103-21711122 | Msa1239780:intron | 40.0% | |
| ATGAAGCTAGATGGGATTGT+GGG | - | chr8_2:21711111-21711130 | Msa1239780:intron | 40.0% | |
| ! | ATTTGGTTCCAGGCTTAATG+AGG | - | chr8_2:21711162-21711181 | Msa1239780:intron | 40.0% |
| ! | TTTGGTTCCAGGCTTAATGA+GGG | - | chr8_2:21711163-21711182 | Msa1239780:intron | 40.0% |
| AATGAGGGAACTCATGTTTG+GGG | - | chr8_2:21711178-21711197 | Msa1239780:intron | 40.0% | |
| AATACTGCTCTTGCTCAACT+TGG | - | chr8_2:21711278-21711297 | Msa1239780:intron | 40.0% | |
| ATACTGCTCTTGCTCAACTT+GGG | - | chr8_2:21711279-21711298 | Msa1239780:intron | 40.0% | |
| ACATATGGAAGCCTGAAAAC+AGG | + | chr8_2:21711314-21711333 | None:intergenic | 40.0% | |
| TCCATATGTACCCCTTACTT+TGG | - | chr8_2:21711325-21711344 | Msa1239780:intron | 40.0% | |
| ! | TCCAAAGTAAGGGGTACATA+TGG | + | chr8_2:21711329-21711348 | None:intergenic | 40.0% |
| !! | TACCCCTTACTTTGGAACAA+AGG | - | chr8_2:21711333-21711352 | Msa1239780:intron | 40.0% |
| !! | ACCCCTTACTTTGGAACAAA+GGG | - | chr8_2:21711334-21711353 | Msa1239780:intron | 40.0% |
| ACCCTTTGTTCCAAAGTAAG+GGG | + | chr8_2:21711338-21711357 | None:intergenic | 40.0% | |
| CTACCCTTTGTTCCAAAGTA+AGG | + | chr8_2:21711340-21711359 | None:intergenic | 40.0% | |
| !! | CTTACTTTGGAACAAAGGGT+AGG | - | chr8_2:21711338-21711357 | Msa1239780:intron | 40.0% |
| AAGGGTAGGGTTTGTGAATT+TGG | - | chr8_2:21711352-21711371 | Msa1239780:intron | 40.0% | |
| ! | AGGGTTTGTGAATTTGGTGA+AGG | - | chr8_2:21711358-21711377 | Msa1239780:intron | 40.0% |
| ! | ATGGGCAGGCAACATTTTAT+TGG | - | chr8_2:21711383-21711402 | Msa1239780:intron | 40.0% |
| ! | TTCAGGTCGTATTTGGTGAG+TGG | - | chr8_2:21709209-21709228 | Msa1239780:three_prime_UTR | 45.0% |
| CTGCTGGTGAAAGGTAAAAC+CGG | + | chr8_2:21709436-21709455 | None:intergenic | 45.0% | |
| !! | ATTCTTGTTGCTGGCTCAAC+TGG | - | chr8_2:21710672-21710691 | Msa1239780:intron | 45.0% |
| AAGTGCAGCATCCATTCCAA+CGG | + | chr8_2:21710841-21710860 | None:intergenic | 45.0% | |
| ! | TGTTGGTGTGAAAGAGTGTG+TGG | - | chr8_2:21711022-21711041 | Msa1239780:intron | 45.0% |
| ! | GTTGGTGTGAAAGAGTGTGT+GGG | - | chr8_2:21711023-21711042 | Msa1239780:intron | 45.0% |
| ! | CACAATCCCATCTAGCTTCA+TGG | + | chr8_2:21711112-21711131 | None:intergenic | 45.0% |
| CATGAAGCTAGATGGGATTG+TGG | - | chr8_2:21711110-21711129 | Msa1239780:intron | 45.0% | |
| TGAAGCTAGATGGGATTGTG+GGG | - | chr8_2:21711112-21711131 | Msa1239780:intron | 45.0% | |
| ! | GTTGCAAGCAATTTGGTTCC+AGG | - | chr8_2:21711152-21711171 | Msa1239780:intron | 45.0% |
| ATGAGTTCCCTCATTAAGCC+TGG | + | chr8_2:21711173-21711192 | None:intergenic | 45.0% | |
| ATGAGGGAACTCATGTTTGG+GGG | - | chr8_2:21711179-21711198 | Msa1239780:intron | 45.0% | |
| TACTGCTCTTGCTCAACTTG+GGG | - | chr8_2:21711280-21711299 | Msa1239780:intron | 45.0% | |
| ! | GGGTTATCAAGCCTGTTTTC+AGG | - | chr8_2:21711300-21711319 | Msa1239780:intron | 45.0% |
| ! | ATTTGGTGAAGGAAATGGGC+AGG | - | chr8_2:21711369-21711388 | Msa1239780:intron | 45.0% |
| AACGTCTCAAGTATCCGTGT+TGG | + | chr8_2:21711527-21711546 | None:intergenic | 45.0% | |
| ! | CGGTTTTACCTTTCACCAGC+AGG | - | chr8_2:21709434-21709453 | Msa1239780:three_prime_UTR | 50.0% |
| TCATACTGACCCGTGTCCTA+AGG | + | chr8_2:21709799-21709818 | None:intergenic | 50.0% | |
| ACAGCTGCGAGACTTGATGT+TGG | - | chr8_2:21710262-21710281 | Msa1239780:CDS | 50.0% | |
| CATCCCTTTGAGCAGCTCAA+CGG | - | chr8_2:21710285-21710304 | Msa1239780:CDS | 50.0% | |
| GCTCAACGGCGGTAAAAGAT+AGG | - | chr8_2:21710299-21710318 | Msa1239780:CDS | 50.0% | |
| AACCTCACATGCAGGTTTGG+TGG | - | chr8_2:21710884-21710903 | Msa1239780:intron | 50.0% | |
| ! | AAGAGTGTGTGGGAACTGAG+AGG | - | chr8_2:21711033-21711052 | Msa1239780:intron | 50.0% |
| AGAGTGTGTGGGAACTGAGA+GGG | - | chr8_2:21711034-21711053 | Msa1239780:intron | 50.0% | |
| !! | GTTGCTGGCTCAACTGGTGA+AGG | - | chr8_2:21710678-21710697 | Msa1239780:intron | 55.0% |
| GCAATAAACGCAACCGAGCG+AGG | - | chr8_2:21710810-21710829 | Msa1239780:intron | 55.0% | |
| AGCCACCAAACCTGCATGTG+AGG | + | chr8_2:21710889-21710908 | None:intergenic | 55.0% | |
| AGATGGGATTGTGGGGCTGT+TGG | - | chr8_2:21711119-21711138 | Msa1239780:intron | 55.0% | |
| CCGCCGTTGAGCTGCTCAAA+GGG | + | chr8_2:21710291-21710310 | None:intergenic | 60.0% | |
| CCCTTTGAGCAGCTCAACGG+CGG | - | chr8_2:21710288-21710307 | Msa1239780:CDS | 60.0% | |
| ACCGCCGTTGAGCTGCTCAA+AGG | + | chr8_2:21710292-21710311 | None:intergenic | 60.0% | |
| TCCAACGGCGAAACCTCGCT+CGG | + | chr8_2:21710826-21710845 | None:intergenic | 60.0% | |
| GCGAGGTTTCGCCGTTGGAA+TGG | - | chr8_2:21710827-21710846 | Msa1239780:intron | 60.0% | |
| ACCGAGCGAGGTTTCGCCGT+TGG | - | chr8_2:21710822-21710841 | Msa1239780:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 21709197 | 21711794 | 21709197 | ID=Msa1239780;Name=Msa1239780 |
| chr8_2 | mRNA | 21709197 | 21711794 | 21709197 | ID=Msa1239780-mRNA-1;Parent=Msa1239780;Name=Msa1239780-mRNA-1;_AED=0.36;_eAED=0.36;_QI=194|1|1|1|1|1|2|331|329 |
| chr8_2 | exon | 21709197 | 21710452 | 21709197 | ID=Msa1239780-mRNA-1:exon:7812;Parent=Msa1239780-mRNA-1 |
| chr8_2 | exon | 21711536 | 21711794 | 21711536 | ID=Msa1239780-mRNA-1:exon:7811;Parent=Msa1239780-mRNA-1 |
| chr8_2 | five_prime_UTR | 21711601 | 21711794 | 21711601 | ID=Msa1239780-mRNA-1:five_prime_utr;Parent=Msa1239780-mRNA-1 |
| chr8_2 | CDS | 21711536 | 21711600 | 21711536 | ID=Msa1239780-mRNA-1:cds;Parent=Msa1239780-mRNA-1 |
| chr8_2 | CDS | 21709528 | 21710452 | 21709528 | ID=Msa1239780-mRNA-1:cds;Parent=Msa1239780-mRNA-1 |
| chr8_2 | three_prime_UTR | 21709197 | 21709527 | 21709197 | ID=Msa1239780-mRNA-1:three_prime_utr;Parent=Msa1239780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
