AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1252780

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1252780 MtrunA17_Chr8g0369051 98.485 66 1 0 1 66 188 253 3.92e-42 136
Msa1252780 MtrunA17_Chr1g0151811 65.152 66 21 1 1 66 230 293 4.96e-21 82.8
Msa1252780 MtrunA17_Chr7g0253361 65.152 66 21 1 1 66 154 217 2.14e-20 80.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1252780 AT4G20300.2 78.788 66 14 0 1 66 287 352 2.76e-33 116
Msa1252780 AT4G20300.1 85.417 48 7 0 1 48 287 334 1.35e-24 93.6
Msa1252780 AT1G55340.2 69.697 66 18 1 1 66 132 195 6.35e-22 84.0
Msa1252780 AT1G55340.1 69.697 66 18 1 1 66 142 205 7.01e-22 84.0
Msa1252780 AT3G03880.1 56.061 66 28 1 1 66 129 193 7.18e-16 68.2

Find 43 sgRNAs with CRISPR-Local

Find 149 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGATTATCTTTATTATCTT+TGG 0.208331 8_2:-49874904 Msa1252780:three_prime_UTR
TGGTATTATCATATTGTATA+GGG 0.232345 8_2:-49874948 Msa1252780:three_prime_UTR
TACCTAAAAGTAGTGTTAAT+TGG 0.240687 8_2:-49874993 Msa1252780:three_prime_UTR
TTATGACAGTATTGCTTTCC+TGG 0.274489 8_2:-49875507 Msa1252780:intron
TTAGTTCTTAGATTTGAAAA+TGG 0.303807 8_2:-49874729 Msa1252780:three_prime_UTR
GAAAGAGCAATGTATATCTT+TGG 0.313476 8_2:+49875768 None:intergenic
GCTCTCTTCTTTGGTCTTTG+TGG 0.318119 8_2:+49875696 None:intergenic
AATAATCATGTTGATACTAA+TGG 0.330401 8_2:-49875822 Msa1252780:five_prime_UTR
CAAAGAGTAGATATGAGGTT+AGG 0.345942 8_2:-49875464 Msa1252780:CDS
AAACATTGATAAAACTCTTC+AGG 0.371111 8_2:-49875670 Msa1252780:intron
AAAGAGTAGATATGAGGTTA+GGG 0.380010 8_2:-49875463 Msa1252780:CDS
ATGGTATTATCATATTGTAT+AGG 0.382485 8_2:-49874949 Msa1252780:three_prime_UTR
ACCAACCCCTAAGCTTTGAT+TGG 0.386153 8_2:+49875110 None:intergenic
TATGACAGTATTGCTTTCCT+GGG 0.424076 8_2:-49875506 Msa1252780:intron
CCCCTTCCCTTCATTACAAA+TGG 0.427947 8_2:-49874968 Msa1252780:three_prime_UTR
GATAATACCATTTGTAATGA+AGG 0.448622 8_2:+49874961 None:intergenic
ACCAAATGTTACCTTCTTGA+CGG 0.472047 8_2:+49875431 None:intergenic
TATAAAGTCTTTAGAGCCGT+TGG 0.487413 8_2:-49875024 Msa1252780:three_prime_UTR
AGTATTGCTTTCCTGGGATG+TGG 0.496577 8_2:-49875500 Msa1252780:CDS
CTTGAAAGGAATGGAAAGCT+TGG 0.510692 8_2:-49875174 Msa1252780:CDS
GTTGTATTATGTAGTATGAG+AGG 0.513568 8_2:-49874875 Msa1252780:three_prime_UTR
ATAATACCATTTGTAATGAA+GGG 0.524258 8_2:+49874962 None:intergenic
TCCAATCAAAGCTTAGGGGT+TGG 0.524865 8_2:-49875111 Msa1252780:three_prime_UTR
TACCATTTGTAATGAAGGGA+AGG 0.525482 8_2:+49874966 None:intergenic
TCTAACAAAGAGTAGATATG+AGG 0.526897 8_2:-49875469 Msa1252780:CDS
CATTCATACGTATGTGCCTG+TGG 0.530843 8_2:-49874799 Msa1252780:three_prime_UTR
TTGTATTATGTAGTATGAGA+GGG 0.539432 8_2:-49874874 Msa1252780:three_prime_UTR
CACAGGCACATACGTATGAA+TGG 0.543012 8_2:+49874800 None:intergenic
CTCAAACAACATGGTCCCAC+AGG 0.543131 8_2:+49874783 None:intergenic
GGTATTATCATATTGTATAG+GGG 0.544176 8_2:-49874947 Msa1252780:three_prime_UTR
ACCATTTGTAATGAAGGGAA+GGG 0.545318 8_2:+49874967 None:intergenic
AAGCGTTGTAGAGGCTTGAA+AGG 0.554292 8_2:-49875188 Msa1252780:CDS
TTAGTGTAGAAGTAATTGAA+TGG 0.558946 8_2:-49875791 Msa1252780:five_prime_UTR
CCATTTGTAATGAAGGGAAG+GGG 0.559151 8_2:+49874968 None:intergenic
GGAGAAGAAATCCGTCAAGA+AGG 0.570167 8_2:-49875442 Msa1252780:intron
TTGTAGAGGCTTGAAAGGAA+TGG 0.579895 8_2:-49875183 Msa1252780:CDS
AGATCTGATAGCCACATCCC+AGG 0.584476 8_2:+49875489 None:intergenic
ATGCAGCAAAAGCGTTGTAG+AGG 0.590099 8_2:-49875197 Msa1252780:intron
TTTAGGTAATGTCATACCAA+CGG 0.620277 8_2:+49875008 None:intergenic
ATTCATACGTATGTGCCTGT+GGG 0.644896 8_2:-49874798 Msa1252780:three_prime_UTR
CATTTGTAATGAAGGGAAGG+GGG 0.659369 8_2:+49874969 None:intergenic
TTAGACACTCTCAAACAACA+TGG 0.683135 8_2:+49874774 None:intergenic
AGGCACATACGTATGAATGG+TGG 0.717362 8_2:+49874803 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGATATAATATGATTATTTT+TGG - chr8_2:49875001-49875020 Msa1252780:three_prime_UTR 10.0%
!!! ATTAATTTTTCTTTTTATGT+GGG + chr8_2:49875140-49875159 None:intergenic 10.0%
!!! TATTAATTTTTCTTTTTATG+TGG + chr8_2:49875141-49875160 None:intergenic 10.0%
!! ATTATTATTATAGTATAGTA+TGG - chr8_2:49875167-49875186 Msa1252780:CDS 10.0%
!! TTATTATTATAGTATAGTAT+GGG - chr8_2:49875168-49875187 Msa1252780:CDS 10.0%
!! AAAATAAAATGAAAAAAAAG+AGG + chr8_2:49875481-49875500 None:intergenic 10.0%
!!! TGATATAATATGATTATTTT+TGG - chr8_2:49875001-49875020 Msa1252780:three_prime_UTR 10.0%
!!! ATTAATTTTTCTTTTTATGT+GGG + chr8_2:49875140-49875159 None:intergenic 10.0%
!!! TATTAATTTTTCTTTTTATG+TGG + chr8_2:49875141-49875160 None:intergenic 10.0%
!! ATTATTATTATAGTATAGTA+TGG - chr8_2:49875167-49875186 Msa1252780:CDS 10.0%
!! TTATTATTATAGTATAGTAT+GGG - chr8_2:49875168-49875187 Msa1252780:CDS 10.0%
!! AAAATAAAATGAAAAAAAAG+AGG + chr8_2:49875481-49875500 None:intergenic 10.0%
!! GAACATGTTATTATATAAAT+TGG - chr8_2:49874971-49874990 Msa1252780:three_prime_UTR 15.0%
!! CATAATGCATAATAAATAAT+GGG + chr8_2:49875285-49875304 None:intergenic 15.0%
!! TCTAAAGACTTTATAAAAAA+AGG + chr8_2:49875506-49875525 None:intergenic 15.0%
!! TTGATTATCTTTATTATCTT+TGG - chr8_2:49875631-49875650 Msa1252780:intron 15.0%
!! GAACATGTTATTATATAAAT+TGG - chr8_2:49874971-49874990 Msa1252780:three_prime_UTR 15.0%
!! CATAATGCATAATAAATAAT+GGG + chr8_2:49875285-49875304 None:intergenic 15.0%
!! TCTAAAGACTTTATAAAAAA+AGG + chr8_2:49875506-49875525 None:intergenic 15.0%
!! TTGATTATCTTTATTATCTT+TGG - chr8_2:49875631-49875650 Msa1252780:intron 15.0%
!! AATAATCATGTTGATACTAA+TGG - chr8_2:49874713-49874732 Msa1252780:three_prime_UTR 20.0%
!! CCATAATGCATAATAAATAA+TGG + chr8_2:49875286-49875305 None:intergenic 20.0%
!! CCATTATTTATTATGCATTA+TGG - chr8_2:49875283-49875302 Msa1252780:intron 20.0%
!! ATAATACCATTTGTAATGAA+GGG + chr8_2:49875576-49875595 None:intergenic 20.0%
!! ATGGTATTATCATATTGTAT+AGG - chr8_2:49875586-49875605 Msa1252780:intron 20.0%
!! TGGTATTATCATATTGTATA+GGG - chr8_2:49875587-49875606 Msa1252780:intron 20.0%
!!! TTTGACAACTTATTTTTGAA+TGG - chr8_2:49875688-49875707 Msa1252780:CDS 20.0%
!!! TTAGTTCTTAGATTTGAAAA+TGG - chr8_2:49875806-49875825 Msa1252780:five_prime_UTR 20.0%
!! AATAATCATGTTGATACTAA+TGG - chr8_2:49874713-49874732 Msa1252780:three_prime_UTR 20.0%
!! CCATAATGCATAATAAATAA+TGG + chr8_2:49875286-49875305 None:intergenic 20.0%
!! CCATTATTTATTATGCATTA+TGG - chr8_2:49875283-49875302 Msa1252780:intron 20.0%
!! ATAATACCATTTGTAATGAA+GGG + chr8_2:49875576-49875595 None:intergenic 20.0%
!! ATGGTATTATCATATTGTAT+AGG - chr8_2:49875586-49875605 Msa1252780:intron 20.0%
!! TGGTATTATCATATTGTATA+GGG - chr8_2:49875587-49875606 Msa1252780:intron 20.0%
!!! TTTGACAACTTATTTTTGAA+TGG - chr8_2:49875688-49875707 Msa1252780:CDS 20.0%
!!! TTAGTTCTTAGATTTGAAAA+TGG - chr8_2:49875806-49875825 Msa1252780:five_prime_UTR 20.0%
! TTAGTGTAGAAGTAATTGAA+TGG - chr8_2:49874744-49874763 Msa1252780:three_prime_UTR 25.0%
!! ATGATTTTCTTGCAATGAAA+GGG - chr8_2:49874807-49874826 Msa1252780:three_prime_UTR 25.0%
! AAACATTGATAAAACTCTTC+AGG - chr8_2:49874865-49874884 Msa1252780:three_prime_UTR 25.0%
! TGCATCAAATTTCTATTCTA+TGG - chr8_2:49874929-49874948 Msa1252780:three_prime_UTR 25.0%
!! ATGCATAATAAATAATGGGA+TGG + chr8_2:49875281-49875300 None:intergenic 25.0%
!! TAATTTTCCAATCAAAGCTT+AGG - chr8_2:49875418-49875437 Msa1252780:intron 25.0%
!! AATTTTCCAATCAAAGCTTA+GGG - chr8_2:49875419-49875438 Msa1252780:intron 25.0%
! TACCTAAAAGTAGTGTTAAT+TGG - chr8_2:49875542-49875561 Msa1252780:intron 25.0%
! GATAATACCATTTGTAATGA+AGG + chr8_2:49875577-49875596 None:intergenic 25.0%
! GGTATTATCATATTGTATAG+GGG - chr8_2:49875588-49875607 Msa1252780:intron 25.0%
! TTGTATTATGTAGTATGAGA+GGG - chr8_2:49875661-49875680 Msa1252780:intron 25.0%
!!! ACTTATTTTTGAATGGTACA+TGG - chr8_2:49875695-49875714 Msa1252780:CDS 25.0%
!!! CTTTTGTTTAAACTAGCAAA+CGG - chr8_2:49875837-49875856 Msa1252780:five_prime_UTR 25.0%
! TTAGTGTAGAAGTAATTGAA+TGG - chr8_2:49874744-49874763 Msa1252780:three_prime_UTR 25.0%
!! ATGATTTTCTTGCAATGAAA+GGG - chr8_2:49874807-49874826 Msa1252780:three_prime_UTR 25.0%
! AAACATTGATAAAACTCTTC+AGG - chr8_2:49874865-49874884 Msa1252780:three_prime_UTR 25.0%
! TGCATCAAATTTCTATTCTA+TGG - chr8_2:49874929-49874948 Msa1252780:three_prime_UTR 25.0%
!! ATGCATAATAAATAATGGGA+TGG + chr8_2:49875281-49875300 None:intergenic 25.0%
!! TAATTTTCCAATCAAAGCTT+AGG - chr8_2:49875418-49875437 Msa1252780:intron 25.0%
!! AATTTTCCAATCAAAGCTTA+GGG - chr8_2:49875419-49875438 Msa1252780:intron 25.0%
! TACCTAAAAGTAGTGTTAAT+TGG - chr8_2:49875542-49875561 Msa1252780:intron 25.0%
! GATAATACCATTTGTAATGA+AGG + chr8_2:49875577-49875596 None:intergenic 25.0%
! GGTATTATCATATTGTATAG+GGG - chr8_2:49875588-49875607 Msa1252780:intron 25.0%
! TTGTATTATGTAGTATGAGA+GGG - chr8_2:49875661-49875680 Msa1252780:intron 25.0%
!!! ACTTATTTTTGAATGGTACA+TGG - chr8_2:49875695-49875714 Msa1252780:CDS 25.0%
GAAAGAGCAATGTATATCTT+TGG + chr8_2:49874770-49874789 None:intergenic 30.0%
! GATGATTTTCTTGCAATGAA+AGG - chr8_2:49874806-49874825 Msa1252780:three_prime_UTR 30.0%
!!! ATGTTTTTTGCTCTCTTCTT+TGG + chr8_2:49874851-49874870 None:intergenic 30.0%
TCTAACAAAGAGTAGATATG+AGG - chr8_2:49875066-49875085 Msa1252780:three_prime_UTR 30.0%
AAAGAGTAGATATGAGGTTA+GGG - chr8_2:49875072-49875091 Msa1252780:three_prime_UTR 30.0%
! TTTTCTTTTTATGTGGGAGT+GGG + chr8_2:49875134-49875153 None:intergenic 30.0%
! TTTTTCTTTTTATGTGGGAG+TGG + chr8_2:49875135-49875154 None:intergenic 30.0%
! ATTTTCCAATCAAAGCTTAG+GGG - chr8_2:49875420-49875439 Msa1252780:intron 30.0%
TTTAGGTAATGTCATACCAA+CGG + chr8_2:49875530-49875549 None:intergenic 30.0%
!! GTCCAATTAACACTACTTTT+AGG + chr8_2:49875547-49875566 None:intergenic 30.0%
GTTGTATTATGTAGTATGAG+AGG - chr8_2:49875660-49875679 Msa1252780:intron 30.0%
GAAAGAGCAATGTATATCTT+TGG + chr8_2:49874770-49874789 None:intergenic 30.0%
! GATGATTTTCTTGCAATGAA+AGG - chr8_2:49874806-49874825 Msa1252780:three_prime_UTR 30.0%
!!! ATGTTTTTTGCTCTCTTCTT+TGG + chr8_2:49874851-49874870 None:intergenic 30.0%
TCTAACAAAGAGTAGATATG+AGG - chr8_2:49875066-49875085 Msa1252780:three_prime_UTR 30.0%
AAAGAGTAGATATGAGGTTA+GGG - chr8_2:49875072-49875091 Msa1252780:three_prime_UTR 30.0%
! TTTTCTTTTTATGTGGGAGT+GGG + chr8_2:49875134-49875153 None:intergenic 30.0%
! TTTTTCTTTTTATGTGGGAG+TGG + chr8_2:49875135-49875154 None:intergenic 30.0%
! ATTTTCCAATCAAAGCTTAG+GGG - chr8_2:49875420-49875439 Msa1252780:intron 30.0%
TTTAGGTAATGTCATACCAA+CGG + chr8_2:49875530-49875549 None:intergenic 30.0%
!! GTCCAATTAACACTACTTTT+AGG + chr8_2:49875547-49875566 None:intergenic 30.0%
GTTGTATTATGTAGTATGAG+AGG - chr8_2:49875660-49875679 Msa1252780:intron 30.0%
TTATGACAGTATTGCTTTCC+TGG - chr8_2:49875028-49875047 Msa1252780:three_prime_UTR 35.0%
TATGACAGTATTGCTTTCCT+GGG - chr8_2:49875029-49875048 Msa1252780:three_prime_UTR 35.0%
CAAAGAGTAGATATGAGGTT+AGG - chr8_2:49875071-49875090 Msa1252780:three_prime_UTR 35.0%
ACCAAATGTTACCTTCTTGA+CGG + chr8_2:49875107-49875126 None:intergenic 35.0%
! TAGTATAGTATGGGCTAAAG+TGG - chr8_2:49875177-49875196 Msa1252780:CDS 35.0%
ATGGAAGACTGAAATGTTGT+TGG - chr8_2:49875302-49875321 Msa1252780:intron 35.0%
TGGAAGACTGAAATGTTGTT+GGG - chr8_2:49875303-49875322 Msa1252780:intron 35.0%
AAATGTTGTTGGGTTTGTCT+TGG - chr8_2:49875313-49875332 Msa1252780:intron 35.0%
!! TATAAAGTCTTTAGAGCCGT+TGG - chr8_2:49875511-49875530 Msa1252780:intron 35.0%
ACCATTTGTAATGAAGGGAA+GGG + chr8_2:49875571-49875590 None:intergenic 35.0%
TACCATTTGTAATGAAGGGA+AGG + chr8_2:49875572-49875591 None:intergenic 35.0%
TTAGACACTCTCAAACAACA+TGG + chr8_2:49875764-49875783 None:intergenic 35.0%
TTATGACAGTATTGCTTTCC+TGG - chr8_2:49875028-49875047 Msa1252780:three_prime_UTR 35.0%
TATGACAGTATTGCTTTCCT+GGG - chr8_2:49875029-49875048 Msa1252780:three_prime_UTR 35.0%
CAAAGAGTAGATATGAGGTT+AGG - chr8_2:49875071-49875090 Msa1252780:three_prime_UTR 35.0%
ACCAAATGTTACCTTCTTGA+CGG + chr8_2:49875107-49875126 None:intergenic 35.0%
! TAGTATAGTATGGGCTAAAG+TGG - chr8_2:49875177-49875196 Msa1252780:CDS 35.0%
ATGGAAGACTGAAATGTTGT+TGG - chr8_2:49875302-49875321 Msa1252780:intron 35.0%
TGGAAGACTGAAATGTTGTT+GGG - chr8_2:49875303-49875322 Msa1252780:intron 35.0%
AAATGTTGTTGGGTTTGTCT+TGG - chr8_2:49875313-49875332 Msa1252780:intron 35.0%
!! TATAAAGTCTTTAGAGCCGT+TGG - chr8_2:49875511-49875530 Msa1252780:intron 35.0%
ACCATTTGTAATGAAGGGAA+GGG + chr8_2:49875571-49875590 None:intergenic 35.0%
TACCATTTGTAATGAAGGGA+AGG + chr8_2:49875572-49875591 None:intergenic 35.0%
TTAGACACTCTCAAACAACA+TGG + chr8_2:49875764-49875783 None:intergenic 35.0%
TCCGTCAAGAAGGTAACATT+TGG - chr8_2:49875103-49875122 Msa1252780:three_prime_UTR 40.0%
TTGTAGAGGCTTGAAAGGAA+TGG - chr8_2:49875352-49875371 Msa1252780:intron 40.0%
CTTGAAAGGAATGGAAAGCT+TGG - chr8_2:49875361-49875380 Msa1252780:intron 40.0%
CATTTGTAATGAAGGGAAGG+GGG + chr8_2:49875569-49875588 None:intergenic 40.0%
CCATTTGTAATGAAGGGAAG+GGG + chr8_2:49875570-49875589 None:intergenic 40.0%
ATTCATACGTATGTGCCTGT+GGG - chr8_2:49875737-49875756 Msa1252780:five_prime_UTR 40.0%
TCCGTCAAGAAGGTAACATT+TGG - chr8_2:49875103-49875122 Msa1252780:three_prime_UTR 40.0%
TTGTAGAGGCTTGAAAGGAA+TGG - chr8_2:49875352-49875371 Msa1252780:intron 40.0%
CTTGAAAGGAATGGAAAGCT+TGG - chr8_2:49875361-49875380 Msa1252780:intron 40.0%
CATTTGTAATGAAGGGAAGG+GGG + chr8_2:49875569-49875588 None:intergenic 40.0%
CCATTTGTAATGAAGGGAAG+GGG + chr8_2:49875570-49875589 None:intergenic 40.0%
ATTCATACGTATGTGCCTGT+GGG - chr8_2:49875737-49875756 Msa1252780:five_prime_UTR 40.0%
! GCTCTCTTCTTTGGTCTTTG+TGG + chr8_2:49874842-49874861 None:intergenic 45.0%
AGTATTGCTTTCCTGGGATG+TGG - chr8_2:49875035-49875054 Msa1252780:three_prime_UTR 45.0%
GGAGAAGAAATCCGTCAAGA+AGG - chr8_2:49875093-49875112 Msa1252780:three_prime_UTR 45.0%
! CTTTTTATGTGGGAGTGGGA+GGG + chr8_2:49875130-49875149 None:intergenic 45.0%
! TCTTTTTATGTGGGAGTGGG+AGG + chr8_2:49875131-49875150 None:intergenic 45.0%
!! ATGCAGCAAAAGCGTTGTAG+AGG - chr8_2:49875338-49875357 Msa1252780:intron 45.0%
! AAGCGTTGTAGAGGCTTGAA+AGG - chr8_2:49875347-49875366 Msa1252780:intron 45.0%
TCCAATCAAAGCTTAGGGGT+TGG - chr8_2:49875424-49875443 Msa1252780:intron 45.0%
! ACCAACCCCTAAGCTTTGAT+TGG + chr8_2:49875428-49875447 None:intergenic 45.0%
CCCCTTCCCTTCATTACAAA+TGG - chr8_2:49875567-49875586 Msa1252780:intron 45.0%
AGGCACATACGTATGAATGG+TGG + chr8_2:49875735-49875754 None:intergenic 45.0%
CACAGGCACATACGTATGAA+TGG + chr8_2:49875738-49875757 None:intergenic 45.0%
CATTCATACGTATGTGCCTG+TGG - chr8_2:49875736-49875755 Msa1252780:exon 45.0%
! GCTCTCTTCTTTGGTCTTTG+TGG + chr8_2:49874842-49874861 None:intergenic 45.0%
AGTATTGCTTTCCTGGGATG+TGG - chr8_2:49875035-49875054 Msa1252780:three_prime_UTR 45.0%
GGAGAAGAAATCCGTCAAGA+AGG - chr8_2:49875093-49875112 Msa1252780:three_prime_UTR 45.0%
! CTTTTTATGTGGGAGTGGGA+GGG + chr8_2:49875130-49875149 None:intergenic 45.0%
! TCTTTTTATGTGGGAGTGGG+AGG + chr8_2:49875131-49875150 None:intergenic 45.0%
!! ATGCAGCAAAAGCGTTGTAG+AGG - chr8_2:49875338-49875357 Msa1252780:intron 45.0%
! AAGCGTTGTAGAGGCTTGAA+AGG - chr8_2:49875347-49875366 Msa1252780:intron 45.0%
TCCAATCAAAGCTTAGGGGT+TGG - chr8_2:49875424-49875443 Msa1252780:intron 45.0%
! ACCAACCCCTAAGCTTTGAT+TGG + chr8_2:49875428-49875447 None:intergenic 45.0%
CCCCTTCCCTTCATTACAAA+TGG - chr8_2:49875567-49875586 Msa1252780:intron 45.0%
AGGCACATACGTATGAATGG+TGG + chr8_2:49875735-49875754 None:intergenic 45.0%
CACAGGCACATACGTATGAA+TGG + chr8_2:49875738-49875757 None:intergenic 45.0%
CATTCATACGTATGTGCCTG+TGG - chr8_2:49875736-49875755 Msa1252780:exon 45.0%
AGATCTGATAGCCACATCCC+AGG + chr8_2:49875049-49875068 None:intergenic 50.0%
CTCAAACAACATGGTCCCAC+AGG + chr8_2:49875755-49875774 None:intergenic 50.0%
AGATCTGATAGCCACATCCC+AGG + chr8_2:49875049-49875068 None:intergenic 50.0%
CTCAAACAACATGGTCCCAC+AGG + chr8_2:49875755-49875774 None:intergenic 50.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 49874700 49875857 49874700 ID=Msa1252780;Name=Msa1252780
chr8_2 mRNA 49874700 49875857 49874700 ID=Msa1252780-mRNA-1;Parent=Msa1252780;Name=Msa1252780-mRNA-1;_AED=0.00;_eAED=0.00;_QI=121|1|1|1|1|1|3|457|66
chr8_2 exon 49874700 49875213 49874700 ID=Msa1252780-mRNA-1:exon:15182;Parent=Msa1252780-mRNA-1
chr8_2 exon 49875443 49875520 49875443 ID=Msa1252780-mRNA-1:exon:15181;Parent=Msa1252780-mRNA-1
chr8_2 exon 49875671 49875857 49875671 ID=Msa1252780-mRNA-1:exon:15180;Parent=Msa1252780-mRNA-1
chr8_2 five_prime_UTR 49875737 49875857 49875737 ID=Msa1252780-mRNA-1:five_prime_utr;Parent=Msa1252780-mRNA-1
chr8_2 CDS 49875671 49875736 49875671 ID=Msa1252780-mRNA-1:cds;Parent=Msa1252780-mRNA-1
chr8_2 CDS 49875443 49875520 49875443 ID=Msa1252780-mRNA-1:cds;Parent=Msa1252780-mRNA-1
chr8_2 CDS 49875157 49875213 49875157 ID=Msa1252780-mRNA-1:cds;Parent=Msa1252780-mRNA-1
chr8_2 three_prime_UTR 49874700 49875156 49874700 ID=Msa1252780-mRNA-1:three_prime_utr;Parent=Msa1252780-mRNA-1
Gene Sequence

>Msa1252780

ATGAAAGGGACTAAAATTCCACAAAGACCAAAGAAGAGAGCAAAAAACATTGATAAAACTCTTCAGTATTGCTTTCCTGGGATGTGGCTATCAGATCTAACAAAGAGTAGATATGAGGTTAGGGAGAAGAAATCCGTCAAGAAGCAAAAGCGTTGTAGAGGCTTGAAAGGAATGGAAAGCTTGGAAAGTGATTCAGAGTAA
Protein sequence

>Msa1252780

MKGTKIPQRPKKRAKNIDKTLQYCFPGMWLSDLTKSRYEVREKKSVKKQKRCRGLKGMESLESDSE*