AlfalfaGEDB | Msa0311730

M. sativa cultivar zhongmu-4 / Msa0311730

KEGG: -
GO: -
PFAM: PF04749.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0311730	XP_013462453.1	99.190	247	2	0	1	247	1	247	0.0	508

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0311730	sp\|Q9M815\|PCR8_ARATH	29.655	145	70	7	71	210	48	165	4.69e-11	63.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0011930	Msa0311730	0.818244	2.168657e-52	-8.615850e-47
Msa0020390	Msa0311730	0.822012	2.974762e-53	-8.615850e-47
Msa0031990	Msa0311730	-0.800046	1.731904e-48	-8.615850e-47
Msa0032860	Msa0311730	0.800366	1.490953e-48	-8.615850e-47
Msa0038870	Msa0311730	0.807534	4.824156e-50	-8.615850e-47
Msa0065680	Msa0311730	-0.813082	3.064993e-51	-8.615850e-47
Msa0086420	Msa0311730	0.802673	5.017479e-49	-8.615850e-47
Msa0090570	Msa0311730	0.816126	6.494573e-52	-8.615850e-47
Msa0106620	Msa0311730	0.807933	3.968140e-50	-8.615850e-47
Msa0106710	Msa0311730	0.815470	9.093321e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0311730	MtrunA17_Chr2g0280931	99.190	247	2	0	1	247	1	247	0.0	508
Msa0311730	MtrunA17_Chr4g0048561	69.340	212	65	0	33	244	31	242	9.25e-106	306
Msa0311730	MtrunA17_Chr8g0356161	87.879	33	4	0	96	128	12	44	5.33e-14	65.1
Msa0311730	MtrunA17_Chr2g0331531	28.571	140	68	6	76	210	33	145	2.36e-11	60.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0311730	AT1G11380.1	58.252	206	83	3	31	235	41	244	2.22e-86	257
Msa0311730	AT1G52200.1	29.655	145	70	7	71	210	48	165	4.76e-12	63.5
Msa0311730	AT1G52200.2	30.323	155	75	7	71	219	48	175	1.52e-11	62.0
Msa0311730	AT5G05350.1	34.091	132	77	3	76	197	307	438	2.10e-11	63.9

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Find 101 sgRNAs with CRISPR-Local

Find 249 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTATATACTACAGGGGC+TGG	0.491204	2_4:-6623897	None:intergenic
AAACTGCAAATGGAACTTGG+GGG	0.738736	2_4:+6620897	Msa0311730:CDS
AAATATGCCGGGCAGACACC+AGG	0.483030	2_4:-6623504	None:intergenic
AACATGAAGCGAGCTGGTCT+TGG	0.436073	2_4:+6622178	Msa0311730:CDS
AAGATGGCACTTGGCACGGT+CGG	0.472962	2_4:+6623283	Msa0311730:CDS
AAGCACAAGTGGGAAGATGT+TGG	0.565703	2_4:-6620541	None:intergenic
AAGGTGATGGTGATGGATGA+AGG	0.527235	2_4:+6620785	Msa0311730:CDS
AATACAAGTGCAAAGGAAAT+AGG	0.296607	2_4:-6624058	None:intergenic
AATATGCCGGGCAGACACCA+GGG	0.660338	2_4:-6623503	None:intergenic
AATCAAACTATATACTACAG+GGG	0.676678	2_4:-6623901	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GGTTGTCTTAGATTTCAAAA+GGG	+	chr2_4:6620662-6620681	Msa0311730:five_prime_UTR	30.0%
TGAGAAAGAGAAGAAAAAGT+TGG	+	chr2_4:6620708-6620727	Msa0311730:five_prime_UTR	30.0%
GAAGTTTAGCTAATTGTGTA+AGG	+	chr2_4:6621217-6621236	Msa0311730:intron	30.0%
TAGCTAATTGTGTAAGGAAT+TGG	+	chr2_4:6621223-6621242	Msa0311730:intron	30.0%
ACTGAAACTATAAGCTCAAA+GGG	-	chr2_4:6621320-6621339	None:intergenic	30.0%
AACTGAAACTATAAGCTCAA+AGG	-	chr2_4:6621321-6621340	None:intergenic	30.0%
TGGGACATTAATTTAAGGAT+TGG	-	chr2_4:6621622-6621641	None:intergenic	30.0%
CATGTCATGAACAAATTCAT+AGG	-	chr2_4:6621988-6622007	None:intergenic	30.0%
GGAAATTGTCAATTCGAAAT+AGG	-	chr2_4:6622307-6622326	None:intergenic	30.0%
AATGCCTGCAATATAAAACA+AGG	-	chr2_4:6622381-6622400	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_4	gene	6620542	6624126	6620542	ID=Msa0311730;Name=Msa0311730
chr2_4	mRNA	6620542	6624126	6620542	ID=Msa0311730-mRNA-1;Parent=Msa0311730;Name=Msa0311730-mRNA-1;_AED=0.15;_eAED=0.15;_QI=216\|1\|1\|1\|1\|1\|5\|710\|247
chr2_4	exon	6620542	6621041	6620542	ID=Msa0311730-mRNA-1:exon:2549;Parent=Msa0311730-mRNA-1
chr2_4	exon	6622153	6622216	6622153	ID=Msa0311730-mRNA-1:exon:2550;Parent=Msa0311730-mRNA-1
chr2_4	exon	6622396	6622560	6622396	ID=Msa0311730-mRNA-1:exon:2551;Parent=Msa0311730-mRNA-1
chr2_4	exon	6623014	6623079	6623014	ID=Msa0311730-mRNA-1:exon:2552;Parent=Msa0311730-mRNA-1
chr2_4	exon	6623252	6624126	6623252	ID=Msa0311730-mRNA-1:exon:2553;Parent=Msa0311730-mRNA-1
chr2_4	five_prime_UTR	6620542	6620757	6620542	ID=Msa0311730-mRNA-1:five_prime_utr;Parent=Msa0311730-mRNA-1
chr2_4	CDS	6620758	6621041	6620758	ID=Msa0311730-mRNA-1:cds;Parent=Msa0311730-mRNA-1
chr2_4	CDS	6622153	6622216	6622153	ID=Msa0311730-mRNA-1:cds;Parent=Msa0311730-mRNA-1
chr2_4	CDS	6622396	6622560	6622396	ID=Msa0311730-mRNA-1:cds;Parent=Msa0311730-mRNA-1
chr2_4	CDS	6623014	6623079	6623014	ID=Msa0311730-mRNA-1:cds;Parent=Msa0311730-mRNA-1
chr2_4	CDS	6623252	6623416	6623252	ID=Msa0311730-mRNA-1:cds;Parent=Msa0311730-mRNA-1
chr2_4	three_prime_UTR	6623417	6624126	6623417	ID=Msa0311730-mRNA-1:three_prime_utr;Parent=Msa0311730-mRNA-1

Gene Sequence

>Msa0311730

ATGGGTGATTTGGAGAAGCAACAAGAGAAGGTGATGGTGATGGATGAAGGAGAAGGAAGAGAAGGTGAAGAGAATGAGAGGCTTTTGGAGGGTATAGCTGTTTTGGATTTTGATATGCTTTGTTCGTCTGTTGCTTTACAAACTGCAAATGGAACTTGGGGGAAGCTTGGAGGAGGTGGAGATGATGAACAGCGTGGTGAGGAGTTTGGTGGTGTTTTGAGGATGTGGGAAGGTGAAGTTCTTGATTGTTTCGAACATCGTCGAATTGCTCTTGAATCTTCATGTTGTCCCTGCTACCGATTTGGGAAGAACATGAAGCGAGCTGGTCTTGGTTCTTGCTATATTCAGGCATTTGTATATTTTCTTCTAGCCATCTGTGCTCTTTTCAACTTCATAGCCTTTATCGTCACGAGACATCACTACTTTCTATACCTGACAGTCACCTTCATCATTACTGGTGGAGCATATTTAGGATTCTACCGAACTCGTATGCGAAAGAAATTCAACATCAAGGGTAGCGACAGTATGGTGGACGATTGTGTTTACCATTTTGTCTGTCCTTGCTGTACATTATGTCAGGAGTCAAGAACACTAGAGATTAACAACGTTCAAGATGGCACTTGGCACGGTCGGGGTGACACCATATGCATAGGTGGCATTAGGAATGGGAGTAAAGCACTCTCTGAGATGATTCCTCCTCCTATCGAGTCGATCAAGCTTACGGATGAAAATTACACCTTATAG

Protein sequence

>Msa0311730

MGDLEKQQEKVMVMDEGEGREGEENERLLEGIAVLDFDMLCSSVALQTANGTWGKLGGGGDDEQRGEEFGGVLRMWEGEVLDCFEHRRIALESSCCPCYRFGKNMKRAGLGSCYIQAFVYFLLAICALFNFIAFIVTRHHYFLYLTVTFIITGGAYLGFYRTRMRKKFNIKGSDSMVDDCVYHFVCPCCTLCQESRTLEINNVQDGTWHGRGDTICIGGIRNGSKALSEMIPPPIESIKLTDENYTL*