AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1279140

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1279140 MtrunA17_Chr8g0369311 99.324 148 1 0 1 148 57 204 7.68e-109 308
Msa1279140 MtrunA17_Chr3g0108261 93.243 148 10 0 1 148 1 148 1.25e-103 292
Msa1279140 MtrunA17_Chr5g0432831 93.243 148 10 0 1 148 1 148 1.25e-103 292
Msa1279140 MtrunA17_Chr7g0275361 92.568 148 11 0 1 148 1 148 1.63e-102 290
Msa1279140 MtrunA17_Chr1g0154011 91.216 148 13 0 1 148 1 148 7.56e-102 288
Msa1279140 MtrunA17_Chr4g0037011 87.838 148 18 0 1 148 1 148 1.08e-98 280
Msa1279140 MtrunA17_Chr8g0378601 51.034 145 71 0 2 146 23 167 2.05e-55 171
Msa1279140 MtrunA17_Chr2g0316201 50.345 145 72 0 4 148 8 152 1.24e-48 153
Msa1279140 MtrunA17_Chr2g0316211 50.000 144 72 0 5 148 9 152 1.50e-47 150
Msa1279140 MtrunA17_Chr8g0362321 46.575 146 73 1 2 142 5 150 4.70e-45 144
Msa1279140 MtrunA17_Chr4g0060351 46.575 146 73 1 2 142 5 150 6.31e-45 144
Msa1279140 MtrunA17_Chr3g0131871 48.611 144 72 2 5 146 6 149 1.36e-42 139
Msa1279140 MtrunA17_Chr3g0139901 42.857 147 80 3 5 147 7 153 1.43e-35 120
Msa1279140 MtrunA17_Chr4g0038891 43.750 128 72 0 4 131 35 162 9.64e-35 119
Msa1279140 MtrunA17_Chr5g0396451 42.424 132 75 1 4 135 35 165 2.69e-33 115
Msa1279140 MtrunA17_Chr1g0199951 42.537 134 75 2 3 135 43 175 1.54e-31 111
Msa1279140 MtrunA17_Chr4g0053191 36.842 152 89 3 1 145 4 155 2.81e-29 104
Msa1279140 MtrunA17_Chr8g0348701 34.459 148 94 3 1 146 1 147 1.30e-26 98.6
Msa1279140 MtrunA17_Chr5g0401831 32.895 152 95 2 1 145 4 155 2.25e-26 97.4
Msa1279140 MtrunA17_Chr5g0403591 35.766 137 83 3 5 139 33 166 3.23e-26 97.4
Msa1279140 MtrunA17_Chr4g0031181 33.333 135 76 2 15 135 18 152 1.02e-25 95.9
Msa1279140 MtrunA17_Chr7g0254701 34.266 143 94 0 4 146 13 155 4.10e-25 96.7
Msa1279140 MtrunA17_Chr8g0387131 35.772 123 77 2 26 146 25 147 5.52e-25 94.4
Msa1279140 MtrunA17_Chr4g0059291 29.730 148 101 3 1 146 1 147 5.73e-23 89.4
Msa1279140 MtrunA17_Chr2g0328001 31.944 144 84 2 15 144 18 161 6.53e-23 88.6
Msa1279140 MtrunA17_Chr8g0372391 40.777 103 59 2 1 102 15 116 9.82e-21 82.8
Msa1279140 MtrunA17_Chr5g0404931 36.893 103 63 2 1 102 15 116 3.18e-18 76.3
Msa1279140 MtrunA17_Chr4g0068301 33.333 117 72 3 2 114 11 125 1.73e-17 77.0
Msa1279140 MtrunA17_Chr8g0345331 34.188 117 68 3 4 115 8 120 2.44e-17 75.9
Msa1279140 MtrunA17_Chr8g0376111 34.426 122 70 3 4 115 43 164 4.86e-16 73.2
Msa1279140 MtrunA17_Chr7g0233631 35.246 122 69 3 4 115 38 159 2.72e-15 71.2
Msa1279140 MtrunA17_Chr7g0233611 35.246 122 69 3 4 115 38 159 3.67e-15 70.9
Msa1279140 MtrunA17_Chr7g0222941 30.081 123 76 3 3 115 90 212 1.52e-14 68.2
Msa1279140 MtrunA17_Chr2g0282211 28.477 151 95 4 3 143 681 828 1.08e-13 67.4
Msa1279140 MtrunA17_Chr4g0047301 29.333 150 93 4 4 143 672 818 1.71e-13 66.6
Msa1279140 MtrunA17_Chr1g0186291 29.592 98 55 2 43 139 30 114 9.46e-13 61.6
Msa1279140 MtrunA17_Chr4g0045101 31.148 122 74 3 4 115 37 158 1.23e-12 63.5
Msa1279140 MtrunA17_Chr2g0317631 29.268 123 77 3 3 115 306 428 2.75e-12 63.2
Msa1279140 MtrunA17_Chr1g0211131 29.508 122 76 3 4 115 823 944 4.46e-12 62.8
Msa1279140 MtrunA17_Chr1g0198021 27.642 123 79 3 3 115 137 259 7.33e-12 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1279140 AT1G64230.2 91.892 148 12 0 1 148 1 148 7.83e-103 291
Msa1279140 AT1G64230.1 91.892 148 12 0 1 148 1 148 7.83e-103 291
Msa1279140 AT5G41700.5 91.892 148 12 0 1 148 1 148 1.21e-102 290
Msa1279140 AT5G41700.2 91.892 148 12 0 1 148 1 148 1.21e-102 290
Msa1279140 AT5G41700.1 91.892 148 12 0 1 148 1 148 1.21e-102 290
Msa1279140 AT5G53300.2 92.568 148 11 0 1 148 1 148 1.80e-102 290
Msa1279140 AT5G53300.4 92.568 148 11 0 1 148 1 148 1.80e-102 290
Msa1279140 AT5G53300.1 92.568 148 11 0 1 148 1 148 1.80e-102 290
Msa1279140 AT4G27960.1 91.892 148 12 0 1 148 1 148 3.56e-102 289
Msa1279140 AT4G27960.2 91.892 148 12 0 1 148 31 178 2.25e-101 288
Msa1279140 AT3G08690.2 90.541 148 14 0 1 148 1 148 4.11e-101 286
Msa1279140 AT3G08690.1 90.541 148 14 0 1 148 1 148 4.11e-101 286
Msa1279140 AT5G56150.1 88.514 148 17 0 1 148 1 148 1.83e-100 285
Msa1279140 AT5G41700.4 90.604 149 13 1 1 148 1 149 8.15e-100 283
Msa1279140 AT1G64230.3 85.987 157 13 1 1 148 1 157 2.05e-98 280
Msa1279140 AT2G16740.1 85.034 147 22 0 1 147 1 147 1.65e-95 272
Msa1279140 AT1G64230.5 71.053 190 13 1 1 148 1 190 6.21e-94 270
Msa1279140 AT1G64230.4 71.053 190 13 1 1 148 1 190 6.21e-94 270
Msa1279140 AT3G08700.2 78.523 149 31 1 1 148 1 149 9.05e-87 250
Msa1279140 AT3G08700.1 78.523 149 31 1 1 148 1 149 9.05e-87 250
Msa1279140 AT5G41700.3 90.385 104 10 0 1 104 1 104 3.50e-68 203
Msa1279140 AT5G53300.3 88.991 109 10 1 1 107 1 109 1.24e-67 200
Msa1279140 AT5G56150.2 88.350 103 12 0 1 103 1 103 7.15e-67 198
Msa1279140 AT3G13550.1 46.897 145 77 0 2 146 37 181 1.38e-52 165
Msa1279140 AT1G78870.2 50.345 145 72 0 4 148 8 152 3.53e-48 152
Msa1279140 AT1G16890.2 49.655 145 73 0 4 148 8 152 5.41e-48 152
Msa1279140 AT1G14400.1 47.260 146 72 1 2 142 5 150 3.22e-45 145
Msa1279140 AT1G14400.2 47.260 146 72 1 2 142 5 150 3.22e-45 145
Msa1279140 AT1G16890.3 47.403 154 72 1 4 148 8 161 3.43e-45 145
Msa1279140 AT5G62540.1 50.376 133 66 0 2 134 5 137 6.10e-45 144
Msa1279140 AT2G02760.1 46.575 146 73 1 2 142 5 150 7.15e-45 144
Msa1279140 AT2G02760.2 46.575 146 73 1 2 142 5 150 7.15e-45 144
Msa1279140 AT2G02760.4 46.575 146 73 1 2 142 5 150 7.15e-45 144
Msa1279140 AT2G02760.3 46.575 146 73 1 2 142 5 150 7.15e-45 144
Msa1279140 AT1G36340.2 46.897 145 76 1 2 146 9 152 1.27e-43 141
Msa1279140 AT1G36340.1 46.897 145 76 1 2 146 9 152 1.27e-43 141
Msa1279140 AT3G13550.2 50.000 114 57 0 2 115 37 150 2.99e-42 138
Msa1279140 AT1G16890.1 52.941 119 56 0 30 148 1 119 5.35e-42 136
Msa1279140 AT1G78870.4 52.941 119 56 0 30 148 1 119 1.21e-41 135
Msa1279140 AT1G78870.1 52.500 120 56 1 30 148 1 120 6.59e-40 130
Msa1279140 AT5G50870.1 45.833 144 76 2 5 146 6 149 1.43e-39 132
Msa1279140 AT5G50870.2 42.581 155 76 3 5 146 6 160 3.57e-36 124
Msa1279140 AT3G24515.1 43.949 157 75 3 3 146 8 164 4.61e-35 125
Msa1279140 AT2G32790.1 50.794 126 58 2 25 148 54 177 6.55e-34 117
Msa1279140 AT5G25760.1 40.136 147 84 3 5 147 7 153 7.05e-33 114
Msa1279140 AT5G25760.2 40.136 147 84 3 5 147 7 153 7.05e-33 114
Msa1279140 AT1G78870.3 48.571 105 54 0 4 108 8 112 3.01e-32 111
Msa1279140 AT3G24515.3 45.902 122 62 1 29 146 68 189 5.69e-32 118
Msa1279140 AT3G20060.1 42.424 132 75 1 4 135 39 169 6.28e-32 112
Msa1279140 AT1G50490.1 43.182 132 74 1 4 135 38 168 1.86e-31 111
Msa1279140 AT3G20060.2 44.737 114 62 1 22 135 12 124 5.54e-30 106
Msa1279140 AT2G46030.5 36.486 148 91 3 1 146 1 147 1.19e-28 104
Msa1279140 AT2G46030.1 36.486 148 91 3 1 146 1 147 1.19e-28 104
Msa1279140 AT2G46030.3 36.486 148 91 3 1 146 73 219 2.92e-28 105
Msa1279140 AT2G46030.4 39.024 123 73 2 26 146 28 150 9.94e-28 102
Msa1279140 AT2G46030.2 39.024 123 73 2 26 146 28 150 9.94e-28 102
Msa1279140 AT3G57870.1 34.211 152 93 2 1 145 5 156 3.34e-27 99.8
Msa1279140 AT5G41340.1 34.459 148 94 3 1 146 1 147 2.01e-26 98.6
Msa1279140 AT1G63800.1 35.135 148 93 3 1 146 1 147 2.23e-26 98.6
Msa1279140 AT1G63800.2 37.398 123 75 2 26 146 10 132 3.26e-26 97.4
Msa1279140 AT5G05080.2 35.664 143 92 0 4 146 13 155 3.60e-26 99.4
Msa1279140 AT5G05080.3 35.664 143 92 0 4 146 13 155 3.60e-26 99.4
Msa1279140 AT5G05080.1 35.664 143 92 0 4 146 13 155 3.60e-26 99.4
Msa1279140 AT5G05080.4 35.664 143 92 0 4 146 13 155 3.60e-26 99.4
Msa1279140 AT3G55380.1 34.815 135 74 2 15 135 19 153 8.97e-26 96.3
Msa1279140 AT4G36800.2 35.036 137 84 3 5 139 34 167 1.30e-25 96.3
Msa1279140 AT4G36800.1 35.036 137 84 3 5 139 34 167 1.30e-25 96.3
Msa1279140 AT5G59300.1 32.639 144 83 2 15 144 18 161 1.61e-23 90.5
Msa1279140 AT3G46460.1 31.944 144 84 2 15 144 18 161 2.64e-23 90.1
Msa1279140 AT2G18600.1 33.577 137 86 3 5 139 35 168 4.48e-23 89.7
Msa1279140 AT2G18600.2 33.577 137 86 3 5 139 35 168 4.48e-23 89.7
Msa1279140 AT5G41340.2 38.462 104 62 2 45 146 9 112 8.07e-23 88.2
Msa1279140 AT3G17000.1 36.752 117 68 3 2 114 12 126 2.10e-20 85.5
Msa1279140 AT1G75440.1 38.889 108 60 3 1 107 15 117 4.36e-19 79.0
Msa1279140 AT3G55380.2 27.811 169 74 3 15 135 19 187 1.17e-18 79.0
Msa1279140 AT1G17280.9 35.043 117 67 3 4 115 8 120 1.44e-18 79.3
Msa1279140 AT1G17280.7 35.043 117 67 3 4 115 8 120 1.44e-18 79.3
Msa1279140 AT1G17280.6 35.043 117 67 3 4 115 8 120 1.44e-18 79.3
Msa1279140 AT1G17280.2 35.043 117 67 3 4 115 8 120 1.44e-18 79.3
Msa1279140 AT1G17280.5 35.043 117 67 3 4 115 8 120 1.44e-18 79.3
Msa1279140 AT1G17280.3 35.043 117 67 3 4 115 8 120 1.44e-18 79.3
Msa1279140 AT1G17280.1 35.043 117 67 3 4 115 8 120 1.44e-18 79.3
Msa1279140 AT1G17280.8 35.043 117 67 3 4 115 8 120 1.44e-18 79.3
Msa1279140 AT1G45050.1 37.864 103 62 2 1 102 15 116 1.49e-18 77.4
Msa1279140 AT5G50430.1 35.043 117 67 3 4 115 8 120 1.76e-18 79.3
Msa1279140 AT5G50430.2 35.043 117 67 3 4 115 8 120 1.76e-18 79.3
Msa1279140 AT5G42990.1 38.835 103 61 2 1 102 15 116 1.79e-18 77.4
Msa1279140 AT4G36410.1 36.111 108 63 3 1 107 15 117 4.20e-18 76.3
Msa1279140 AT1G17280.4 32.520 123 68 3 4 115 8 126 2.70e-17 75.9
Msa1279140 AT3G46460.3 29.730 111 65 1 47 144 9 119 3.78e-16 70.5
Msa1279140 AT3G46460.2 29.730 111 65 1 47 144 9 119 3.78e-16 70.5
Msa1279140 AT3G15355.1 28.289 152 96 4 3 144 334 482 3.91e-12 63.2
Msa1279140 AT1G45050.2 34.831 89 56 2 1 88 15 102 5.32e-12 59.3
Msa1279140 AT5G50430.3 30.769 117 59 4 4 115 8 107 2.46e-11 59.7
Msa1279140 AT1G53025.2 26.000 150 98 4 4 143 274 420 4.32e-11 60.1
Msa1279140 AT1G53025.1 26.000 150 98 4 4 143 274 420 4.69e-11 60.1

Find 84 sgRNAs with CRISPR-Local

Find 207 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGGGCTCCATTGCTCTTTC+AGG 0.120840 8_3:-15959834 None:intergenic
CTACCGTTACTGTTGATATT+AGG 0.137672 8_3:-15959796 None:intergenic
GACTCTCTTATCTGCCATTT+TGG 0.148948 8_3:+15960506 Msa1279140:three_prime_UTR
CTTAACCCATGGCATATTTC+TGG 0.152621 8_3:-15960398 None:intergenic
ACCTTAGGGTTTGAGGGTTT+GGG 0.161584 8_3:-15957185 None:intergenic
GACCTTAGGGTTTGAGGGTT+TGG 0.177331 8_3:-15957186 None:intergenic
ATTTCATTTAGTTTACATTA+AGG 0.249909 8_3:+15960610 Msa1279140:three_prime_UTR
CCATTGGCAAGCTACAATTA+TGG 0.267578 8_3:+15958618 Msa1279140:CDS
CAGAAATATGCCATGGGTTA+AGG 0.286801 8_3:+15960399 Msa1279140:CDS
TTGTACATATGAGCAATTTC+AGG 0.311190 8_3:-15960333 None:intergenic
TACCGTTACTGTTGATATTA+GGG 0.326660 8_3:-15959795 None:intergenic
CATTGGCAAGCTACAATTAT+GGG 0.330983 8_3:+15958619 Msa1279140:CDS
CCTCCTGCCTCTTGCAGTGC+TGG 0.337467 8_3:+15957397 Msa1279140:CDS
TTTCATTTAGTTTACATTAA+GGG 0.347300 8_3:+15960611 Msa1279140:three_prime_UTR
TTCACTGACCTTAGGGTTTG+AGG 0.353589 8_3:-15957192 None:intergenic
TTAACCCATGGCATATTTCT+GGG 0.371740 8_3:-15960397 None:intergenic
AATAATGCACAGTTCCAAAA+TGG 0.372760 8_3:-15960520 None:intergenic
AGAAATATGCCATGGGTTAA+GGG 0.381920 8_3:+15960400 Msa1279140:CDS
TGATGTGATTCACTGACCTT+AGG 0.383092 8_3:-15957200 None:intergenic
CCAGGAGATAGCCCATTTGC+GGG 0.390432 8_3:+15958643 Msa1279140:CDS
TTCCTTATTGATCCGCTTTG+AGG 0.396653 8_3:-15957353 None:intergenic
AGAAACACACCTCCCGCAAA+TGG 0.400575 8_3:-15958655 None:intergenic
ACCTTGGATATTGTGAGGGC+AGG 0.405744 8_3:-15959853 None:intergenic
TCAGGGACCAGAGGATCATC+TGG 0.406568 8_3:-15960315 None:intergenic
TCACTGACCTTAGGGTTTGA+GGG 0.417210 8_3:-15957191 None:intergenic
GGCCTCAAAGCGGATCAATA+AGG 0.439633 8_3:+15957351 Msa1279140:CDS
GAATTTGGGTTTACCTTGGG+TGG 0.439702 8_3:-15958715 None:intergenic
ATCAGTCAACAGAGAACAAA+TGG 0.443192 8_3:-15960286 None:intergenic
AAAAGCAGAAGAGAAGAAGA+AGG 0.444499 8_3:-15957148 None:intergenic
CCCAGGAGATAGCCCATTTG+CGG 0.455352 8_3:+15958642 Msa1279140:CDS
AGATAAAATGTAAAACATCT+TGG 0.459599 8_3:-15960427 None:intergenic
GCGGATCAATAAGGAATTGA+AGG 0.460462 8_3:+15957360 Msa1279140:CDS
CCGCAAATGGGCTATCTCCT+GGG 0.465958 8_3:-15958642 None:intergenic
GATGTGATTCACTGACCTTA+GGG 0.473602 8_3:-15957199 None:intergenic
TCCCAACCCAGATGATCCTC+TGG 0.480906 8_3:+15960308 Msa1279140:CDS
ACCAGAGGATCATCTGGGTT+GGG 0.483549 8_3:-15960309 None:intergenic
CCTTAGGGTTTGAGGGTTTG+GGG 0.487224 8_3:-15957184 None:intergenic
TTTACCTTGGGTGGTTTGAA+AGG 0.493166 8_3:-15958706 None:intergenic
TGTACATATGAGCAATTTCA+GGG 0.503724 8_3:-15960332 None:intergenic
ATGAGGCCACTGCTCGGTCA+TGG 0.505125 8_3:+15960373 Msa1279140:CDS
GAAACACACCTCCCGCAAAT+GGG 0.512424 8_3:-15958654 None:intergenic
TGTGCAAATTCACTTCCCTC+CGG 0.514742 8_3:+15958678 Msa1279140:CDS
AGGGTTATGCTATGCGTTTG+AGG 0.517584 8_3:-15957128 None:intergenic
GGTGGTTTGAAAGGATAATC+CGG 0.519248 8_3:-15958697 None:intergenic
GACCAGAGGATCATCTGGGT+TGG 0.531915 8_3:-15960310 None:intergenic
GAGCGTTCAGTATTATATAG+TGG 0.533943 8_3:-15957106 None:intergenic
CCTTGGATATTGTGAGGGCA+GGG 0.540091 8_3:-15959852 None:intergenic
AAAGCAGAAGAGAAGAAGAA+GGG 0.543752 8_3:-15957147 None:intergenic
ATACCAGCACTGCAAGAGGC+AGG 0.544134 8_3:-15957400 None:intergenic
CAAGCTACAATTATGGGCCC+AGG 0.551929 8_3:+15958625 Msa1279140:CDS
GATCCGCTTTGAGGCCATCT+CGG 0.560812 8_3:-15957344 None:intergenic
GAGTGACAAAGCTAAGTATG+AGG 0.561393 8_3:+15960356 Msa1279140:CDS
GGAACTGTGCATTATTGGAA+AGG 0.562558 8_3:+15960527 Msa1279140:three_prime_UTR
ATTGCTCTTTCAGGATGTCA+AGG 0.568753 8_3:-15959825 None:intergenic
TGGAACATATCATCAGCGAC+AGG 0.569142 8_3:-15958598 None:intergenic
CCCCAAACCCTCAAACCCTA+AGG 0.572676 8_3:+15957184 Msa1279140:five_prime_UTR
GAAAATACCAGCACTGCAAG+AGG 0.581847 8_3:-15957404 None:intergenic
CTAAGTATGAGGCCACTGCT+CGG 0.591968 8_3:+15960367 Msa1279140:CDS
AGATCACCTTGGATATTGTG+AGG 0.593954 8_3:-15959858 None:intergenic
CCCTGCCCTCACAATATCCA+AGG 0.594906 8_3:+15959852 Msa1279140:CDS
ATGGACCCAGAAATATGCCA+TGG 0.598403 8_3:+15960392 Msa1279140:CDS
CTTGGCCATCCCTTAACCCA+TGG 0.604057 8_3:-15960409 None:intergenic
GATCACCTTGGATATTGTGA+GGG 0.604360 8_3:-15959857 None:intergenic
CAGGGACCAGAGGATCATCT+GGG 0.604692 8_3:-15960314 None:intergenic
CACCCTAATATCAACAGTAA+CGG 0.606586 8_3:+15959793 Msa1279140:CDS
GGAATTGAAGGACTTGCAGA+AGG 0.606883 8_3:+15957372 Msa1279140:CDS
TTGACATCCTGAAAGAGCAA+TGG 0.608625 8_3:+15959827 Msa1279140:CDS
ATATGCCATGGGTTAAGGGA+TGG 0.608734 8_3:+15960404 Msa1279140:exon
CCATAATTGTAGCTTGCCAA+TGG 0.608901 8_3:-15958618 None:intergenic
TTATCCTTTCAAACCACCCA+AGG 0.609431 8_3:+15958702 Msa1279140:CDS
TCGCTGATGATATGTTCCAT+TGG 0.614388 8_3:+15958602 Msa1279140:CDS
TGTGAACAGTGTTACCGAGA+TGG 0.626407 8_3:+15957330 Msa1279140:intron
CGTTACTGTTGATATTAGGG+TGG 0.631865 8_3:-15959792 None:intergenic
CTGGGTCCATGACCGAGCAG+TGG 0.634278 8_3:-15960379 None:intergenic
TCAGGTTTCATTCCGCACAA+AGG 0.634356 8_3:+15959765 Msa1279140:intron
GGAACATATCATCAGCGACA+GGG 0.652409 8_3:-15958597 None:intergenic
TAGGGTGGAAAACCTTTGTG+CGG 0.653142 8_3:-15959777 None:intergenic
TGGACCCAGAAATATGCCAT+GGG 0.659562 8_3:+15960393 Msa1279140:CDS
TGAGCAATTTCAGGGACCAG+AGG 0.676101 8_3:-15960324 None:intergenic
CCAGCACTGCAAGAGGCAGG+AGG 0.680239 8_3:-15957397 None:intergenic
GTTTGAAAGGATAATCCGGA+GGG 0.687186 8_3:-15958693 None:intergenic
GGAGATAGCCCATTTGCGGG+AGG 0.688783 8_3:+15958646 Msa1279140:CDS
GGTTTGAAAGGATAATCCGG+AGG 0.710430 8_3:-15958694 None:intergenic
TTACCGAGATGGCCTCAAAG+CGG 0.762010 8_3:+15957341 Msa1279140:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAATTTTAACAAAGTTTT+AGG + chr8_3:15957704-15957723 Msa1279140:intron 10.0%
!! AAATTAAATATCAATTGTAT+TGG + chr8_3:15958998-15959017 Msa1279140:intron 10.0%
!!! CATTATTTAATTTCATTAAG+TGG - chr8_3:15957634-15957653 None:intergenic 15.0%
!! TGATTATGATAACTTAAAAT+TGG + chr8_3:15957920-15957939 Msa1279140:intron 15.0%
!!! TATTTGAAGCAAAAATAATT+GGG - chr8_3:15959170-15959189 None:intergenic 15.0%
!! TTAACGTAAAAAAAAACAGA+GGG - chr8_3:15957499-15957518 None:intergenic 20.0%
!! ATTAACGTAAAAAAAAACAG+AGG - chr8_3:15957500-15957519 None:intergenic 20.0%
!!! CGAAAACTTAATATTGATTT+TGG + chr8_3:15957838-15957857 Msa1279140:intron 20.0%
!!! TAAGTTATCATAATCACTTT+TGG - chr8_3:15957916-15957935 None:intergenic 20.0%
!!! AATGACTTATTTTATTGCTT+TGG + chr8_3:15958250-15958269 Msa1279140:intron 20.0%
!!! TTTTTATGCAATTTTTATGC+AGG + chr8_3:15958574-15958593 Msa1279140:intron 20.0%
!!! TTAAATTGTGGTTTTAACAA+CGG - chr8_3:15959058-15959077 None:intergenic 20.0%
!!! GTATTTGAAGCAAAAATAAT+TGG - chr8_3:15959171-15959190 None:intergenic 20.0%
!! TAAAATGTAAGATCATAAGA+AGG - chr8_3:15959368-15959387 None:intergenic 20.0%
!! CCATTAACTACAATTAATAT+GGG - chr8_3:15959994-15960013 None:intergenic 20.0%
!! TCCATTAACTACAATTAATA+TGG - chr8_3:15959995-15960014 None:intergenic 20.0%
!!! AATAAATAAGAGTGTATTAG+TGG + chr8_3:15960037-15960056 Msa1279140:intron 20.0%
!!! AATAAATAAGAGTGTATTAG+TGG + chr8_3:15960037-15960056 Msa1279140:intron 20.0%
!!! TCTAAAATGACAAATTATAC+TGG + chr8_3:15960171-15960190 Msa1279140:intron 20.0%
!! AGATAAAATGTAAAACATCT+TGG - chr8_3:15960430-15960449 None:intergenic 20.0%
! TATCAAACACATATATTCCT+CGG + chr8_3:15957441-15957460 Msa1279140:intron 25.0%
!!! TATTGATTTTGGAATGTTTG+AGG + chr8_3:15957849-15957868 Msa1279140:intron 25.0%
!! TGAATGTTTAGATTCTCTTT+TGG + chr8_3:15957885-15957904 Msa1279140:intron 25.0%
!! GAATGTTTAGATTCTCTTTT+GGG + chr8_3:15957886-15957905 Msa1279140:intron 25.0%
!!! GTTTTGACTTTTGATATGTT+TGG + chr8_3:15957942-15957961 Msa1279140:intron 25.0%
! CCAGTTAAAACAAATTTCAT+AGG - chr8_3:15957979-15957998 None:intergenic 25.0%
!!! CCTATGAAATTTGTTTTAAC+TGG + chr8_3:15957976-15957995 Msa1279140:intron 25.0%
! AAACTTGAATCATTTCATGT+GGG - chr8_3:15958296-15958315 None:intergenic 25.0%
! TAAACTTGAATCATTTCATG+TGG - chr8_3:15958297-15958316 None:intergenic 25.0%
! ATTTGCATAAAGCAGAATTT+GGG - chr8_3:15958732-15958751 None:intergenic 25.0%
! AGCAAAAATAATTGGGATTT+GGG - chr8_3:15959163-15959182 None:intergenic 25.0%
! AAGCAAAAATAATTGGGATT+TGG - chr8_3:15959164-15959183 None:intergenic 25.0%
!!! TATTTTTGCTTCAAATACAC+TGG + chr8_3:15959173-15959192 Msa1279140:intron 25.0%
!! ATTTTTGCTTCAAATACACT+GGG + chr8_3:15959174-15959193 Msa1279140:intron 25.0%
! TCCTCAGTAATTATATTTGT+AGG + chr8_3:15959409-15959428 Msa1279140:intron 25.0%
! TCCTACAAATATAATTACTG+AGG - chr8_3:15959413-15959432 None:intergenic 25.0%
! TTCCAATATTACCAACAAAA+GGG - chr8_3:15959519-15959538 None:intergenic 25.0%
! CATTCATTATCAATATGTTC+AGG + chr8_3:15959747-15959766 Msa1279140:intron 25.0%
! ATAGAATATTAAGATCACCT+TGG - chr8_3:15959872-15959891 None:intergenic 25.0%
! CCCATATTAATTGTAGTTAA+TGG + chr8_3:15959991-15960010 Msa1279140:intron 25.0%
!!! AAGTGAATGGAATAGTTTTT+TGG + chr8_3:15960204-15960223 Msa1279140:intron 25.0%
!! TTTGTTTGAATTTTCTTGTC+AGG + chr8_3:15960227-15960246 Msa1279140:intron 25.0%
!! TTGTTTGAATTTTCTTGTCA+GGG + chr8_3:15960228-15960247 Msa1279140:intron 25.0%
!! CTGAAATATTAGAATTTTGC+AGG + chr8_3:15960254-15960273 Msa1279140:intron 25.0%
ACAGAGGGAATAATAAATCA+AGG - chr8_3:15957484-15957503 None:intergenic 30.0%
ACACATCCATATACATATAG+GGG - chr8_3:15957769-15957788 None:intergenic 30.0%
CACACATCCATATACATATA+GGG - chr8_3:15957770-15957789 None:intergenic 30.0%
ACACACATCCATATACATAT+AGG - chr8_3:15957771-15957790 None:intergenic 30.0%
TTGTATGCATATTCACCTTT+GGG + chr8_3:15957798-15957817 Msa1279140:intron 30.0%
!!! GTCAATTTTTTTTCTCCCAA+AGG - chr8_3:15957816-15957835 None:intergenic 30.0%
!!! AATTTGTTTTAACTGGAAGC+TGG + chr8_3:15957983-15958002 Msa1279140:intron 30.0%
AAGCATTAAAATAAGTCGAC+AGG - chr8_3:15958167-15958186 None:intergenic 30.0%
!!! GTCGACTTATTTTAATGCTT+TGG + chr8_3:15958167-15958186 Msa1279140:intron 30.0%
ATTCTGATACTACAAACATG+TGG - chr8_3:15958214-15958233 None:intergenic 30.0%
TAAGATGAGATAAAGTGAAC+TGG + chr8_3:15958323-15958342 Msa1279140:intron 30.0%
AAGATGAGATAAAGTGAACT+GGG + chr8_3:15958324-15958343 Msa1279140:intron 30.0%
CATTTGCATAAAGCAGAATT+TGG - chr8_3:15958733-15958752 None:intergenic 30.0%
AATGTATAACAGACACATGT+TGG + chr8_3:15958749-15958768 Msa1279140:intron 30.0%
ATGTATAACAGACACATGTT+GGG + chr8_3:15958750-15958769 Msa1279140:intron 30.0%
TGATTTCCATTGTTATATGC+TGG - chr8_3:15958885-15958904 None:intergenic 30.0%
!!! AACTCCAAATCTTTTTTGCA+AGG + chr8_3:15958931-15958950 Msa1279140:intron 30.0%
CGATCATGCAATTTAAATTG+TGG - chr8_3:15959070-15959089 None:intergenic 30.0%
GTCATCTTCTTTATGACATA+TGG + chr8_3:15959125-15959144 Msa1279140:intron 30.0%
GCAAAAATAATTGGGATTTG+GGG - chr8_3:15959162-15959181 None:intergenic 30.0%
! GTGTTTGAAGCAAAAGTAAT+TGG - chr8_3:15959213-15959232 None:intergenic 30.0%
TCAGAATCAAACATAACACA+TGG - chr8_3:15959330-15959349 None:intergenic 30.0%
TAATTACTGAGGATCAGAAT+GGG - chr8_3:15959402-15959421 None:intergenic 30.0%
ATAATTACTGAGGATCAGAA+TGG - chr8_3:15959403-15959422 None:intergenic 30.0%
TCCAATATTACCAACAAAAG+GGG - chr8_3:15959518-15959537 None:intergenic 30.0%
CTTCCAATATTACCAACAAA+AGG - chr8_3:15959520-15959539 None:intergenic 30.0%
ACACAAAGTGGAATTATGAA+GGG - chr8_3:15959713-15959732 None:intergenic 30.0%
TACCGTTACTGTTGATATTA+GGG - chr8_3:15959798-15959817 None:intergenic 30.0%
AAATGAGCTTCATTTACGAA+AGG + chr8_3:15959967-15959986 Msa1279140:intron 30.0%
TGTACATATGAGCAATTTCA+GGG - chr8_3:15960335-15960354 None:intergenic 30.0%
TTGTACATATGAGCAATTTC+AGG - chr8_3:15960336-15960355 None:intergenic 30.0%
AATAATGCACAGTTCCAAAA+TGG - chr8_3:15960523-15960542 None:intergenic 30.0%
!!! ATTTTGGAACTGTGCATTAT+TGG + chr8_3:15960522-15960541 Msa1279140:three_prime_UTR 30.0%
GAGCGTTCAGTATTATATAG+TGG - chr8_3:15957109-15957128 None:intergenic 35.0%
AAAGCAGAAGAGAAGAAGAA+GGG - chr8_3:15957150-15957169 None:intergenic 35.0%
AAAAGCAGAAGAGAAGAAGA+AGG - chr8_3:15957151-15957170 None:intergenic 35.0%
ACACATATATTCCTCGGATT+AGG + chr8_3:15957447-15957466 Msa1279140:intron 35.0%
CTTGTATGCATATTCACCTT+TGG + chr8_3:15957797-15957816 Msa1279140:intron 35.0%
!! TTTTAACTGGAAGCTGGATT+AGG + chr8_3:15957989-15958008 Msa1279140:intron 35.0%
ATTCACCACAACATTGATAG+CGG - chr8_3:15958082-15958101 None:intergenic 35.0%
TGTTGTGGTGAATCTTTAGT+TGG + chr8_3:15958089-15958108 Msa1279140:intron 35.0%
!! TACTTCTAGTTCTAGCAGAA+GGG - chr8_3:15958362-15958381 None:intergenic 35.0%
!! TTACTTCTAGTTCTAGCAGA+AGG - chr8_3:15958363-15958382 None:intergenic 35.0%
CATTGGCAAGCTACAATTAT+GGG + chr8_3:15958619-15958638 Msa1279140:CDS 35.0%
CTTTAGCCAGCATATAACAA+TGG + chr8_3:15958876-15958895 Msa1279140:intron 35.0%
CTGTCCTTGCAAAAAAGATT+TGG - chr8_3:15958938-15958957 None:intergenic 35.0%
GAATCAAACATAACACATGG+TGG - chr8_3:15959327-15959346 None:intergenic 35.0%
ACAAGATCATGCCTAAGATT+GGG - chr8_3:15959471-15959490 None:intergenic 35.0%
AACAAGATCATGCCTAAGAT+TGG - chr8_3:15959472-15959491 None:intergenic 35.0%
!!! TCCCCTTTTGTTGGTAATAT+TGG + chr8_3:15959514-15959533 Msa1279140:intron 35.0%
CAACTGGCTACACATAATTA+GGG - chr8_3:15959612-15959631 None:intergenic 35.0%
ACAACTGGCTACACATAATT+AGG - chr8_3:15959613-15959632 None:intergenic 35.0%
GCATCTCTATAATGAACAAC+TGG - chr8_3:15959628-15959647 None:intergenic 35.0%
CACACAAAGTGGAATTATGA+AGG - chr8_3:15959714-15959733 None:intergenic 35.0%
ATACAAACACTCACACAAAG+TGG - chr8_3:15959725-15959744 None:intergenic 35.0%
CACCCTAATATCAACAGTAA+CGG + chr8_3:15959793-15959812 Msa1279140:CDS 35.0%
CTACCGTTACTGTTGATATT+AGG - chr8_3:15959799-15959818 None:intergenic 35.0%
TGGACAAGTGATTAAGTGAA+TGG + chr8_3:15960191-15960210 Msa1279140:intron 35.0%
ATCAGTCAACAGAGAACAAA+TGG - chr8_3:15960289-15960308 None:intergenic 35.0%
TTAACCCATGGCATATTTCT+GGG - chr8_3:15960400-15960419 None:intergenic 35.0%
! AGAAATATGCCATGGGTTAA+GGG + chr8_3:15960400-15960419 Msa1279140:CDS 35.0%
GATGTGATTCACTGACCTTA+GGG - chr8_3:15957202-15957221 None:intergenic 40.0%
TGATGTGATTCACTGACCTT+AGG - chr8_3:15957203-15957222 None:intergenic 40.0%
TTCCTTATTGATCCGCTTTG+AGG - chr8_3:15957356-15957375 None:intergenic 40.0%
GCGGATCAATAAGGAATTGA+AGG + chr8_3:15957360-15957379 Msa1279140:CDS 40.0%
GACATATGTCACGTGCTTTA+GGG + chr8_3:15957562-15957581 Msa1279140:intron 40.0%
TACGCACCCCTATATGTATA+TGG + chr8_3:15957760-15957779 Msa1279140:intron 40.0%
TCGCTGATGATATGTTCCAT+TGG + chr8_3:15958602-15958621 Msa1279140:CDS 40.0%
! CCATAATTGTAGCTTGCCAA+TGG - chr8_3:15958621-15958640 None:intergenic 40.0%
CCATTGGCAAGCTACAATTA+TGG + chr8_3:15958618-15958637 Msa1279140:CDS 40.0%
GTTTGAAAGGATAATCCGGA+GGG - chr8_3:15958696-15958715 None:intergenic 40.0%
GGTGGTTTGAAAGGATAATC+CGG - chr8_3:15958700-15958719 None:intergenic 40.0%
TTATCCTTTCAAACCACCCA+AGG + chr8_3:15958702-15958721 Msa1279140:CDS 40.0%
TTTACCTTGGGTGGTTTGAA+AGG - chr8_3:15958709-15958728 None:intergenic 40.0%
! GCAGAATTTGGGTTTACCTT+GGG - chr8_3:15958721-15958740 None:intergenic 40.0%
! AGCAGAATTTGGGTTTACCT+TGG - chr8_3:15958722-15958741 None:intergenic 40.0%
ACATGTTGGGCTATATGTCT+AGG + chr8_3:15958763-15958782 Msa1279140:intron 40.0%
TCACCATTCTACACAAGTAG+TGG + chr8_3:15959097-15959116 Msa1279140:intron 40.0%
AGGATCTTACGATCCTTGTT+AGG + chr8_3:15959429-15959448 Msa1279140:intron 40.0%
GGGATAGCAAAATCCTAACA+AGG - chr8_3:15959445-15959464 None:intergenic 40.0%
! TGTTTTGCTTCCCCTTTTGT+TGG + chr8_3:15959505-15959524 Msa1279140:intron 40.0%
!! TGGTGGATTGAATCAGATTG+GGG - chr8_3:15959589-15959608 None:intergenic 40.0%
!! GTGGTGGATTGAATCAGATT+GGG - chr8_3:15959590-15959609 None:intergenic 40.0%
CGTTACTGTTGATATTAGGG+TGG - chr8_3:15959795-15959814 None:intergenic 40.0%
ATTGCTCTTTCAGGATGTCA+AGG - chr8_3:15959828-15959847 None:intergenic 40.0%
TTGACATCCTGAAAGAGCAA+TGG + chr8_3:15959827-15959846 Msa1279140:CDS 40.0%
GATCACCTTGGATATTGTGA+GGG - chr8_3:15959860-15959879 None:intergenic 40.0%
AGATCACCTTGGATATTGTG+AGG - chr8_3:15959861-15959880 None:intergenic 40.0%
GAGTGACAAAGCTAAGTATG+AGG + chr8_3:15960356-15960375 Msa1279140:CDS 40.0%
CTTAACCCATGGCATATTTC+TGG - chr8_3:15960401-15960420 None:intergenic 40.0%
! CAGAAATATGCCATGGGTTA+AGG + chr8_3:15960399-15960418 Msa1279140:CDS 40.0%
!! GACTCTCTTATCTGCCATTT+TGG + chr8_3:15960506-15960525 Msa1279140:three_prime_UTR 40.0%
GGAACTGTGCATTATTGGAA+AGG + chr8_3:15960527-15960546 Msa1279140:three_prime_UTR 40.0%
AGGGTTATGCTATGCGTTTG+AGG - chr8_3:15957131-15957150 None:intergenic 45.0%
ACCTTAGGGTTTGAGGGTTT+GGG - chr8_3:15957188-15957207 None:intergenic 45.0%
TCACTGACCTTAGGGTTTGA+GGG - chr8_3:15957194-15957213 None:intergenic 45.0%
TTCACTGACCTTAGGGTTTG+AGG - chr8_3:15957195-15957214 None:intergenic 45.0%
TGTGAACAGTGTTACCGAGA+TGG + chr8_3:15957330-15957349 Msa1279140:intron 45.0%
GGAATTGAAGGACTTGCAGA+AGG + chr8_3:15957372-15957391 Msa1279140:CDS 45.0%
GAAAATACCAGCACTGCAAG+AGG - chr8_3:15957407-15957426 None:intergenic 45.0%
CTATAAACACGCCTAATCCG+AGG - chr8_3:15957461-15957480 None:intergenic 45.0%
CGACATATGTCACGTGCTTT+AGG + chr8_3:15957561-15957580 Msa1279140:intron 45.0%
!! ATGTCACGTGCTTTAGGGTT+TGG + chr8_3:15957567-15957586 Msa1279140:intron 45.0%
!! TGTCACGTGCTTTAGGGTTT+GGG + chr8_3:15957568-15957587 Msa1279140:intron 45.0%
ATGCTCCGCTATCAATGTTG+TGG + chr8_3:15958074-15958093 Msa1279140:intron 45.0%
ATAAAGTGAACTGGGTGCCT+GGG + chr8_3:15958332-15958351 Msa1279140:intron 45.0%
GGAACATATCATCAGCGACA+GGG - chr8_3:15958600-15958619 None:intergenic 45.0%
TGGAACATATCATCAGCGAC+AGG - chr8_3:15958601-15958620 None:intergenic 45.0%
TGTGCAAATTCACTTCCCTC+CGG + chr8_3:15958678-15958697 Msa1279140:CDS 45.0%
GGTTTGAAAGGATAATCCGG+AGG - chr8_3:15958697-15958716 None:intergenic 45.0%
! GAATTTGGGTTTACCTTGGG+TGG - chr8_3:15958718-15958737 None:intergenic 45.0%
CCACCACTACTTGTGTAGAA+TGG - chr8_3:15959103-15959122 None:intergenic 45.0%
CCATTCTACACAAGTAGTGG+TGG + chr8_3:15959100-15959119 Msa1279140:intron 45.0%
TTCAAATACACTGGGAGCGA+TGG + chr8_3:15959182-15959201 Msa1279140:intron 45.0%
GATCAGAATGGGTAGCAAGA+TGG - chr8_3:15959391-15959410 None:intergenic 45.0%
TCATGCCTAAGATTGGGAGA+GGG - chr8_3:15959465-15959484 None:intergenic 45.0%
ATCATGCCTAAGATTGGGAG+AGG - chr8_3:15959466-15959485 None:intergenic 45.0%
!! GGTGGTGGATTGAATCAGAT+TGG - chr8_3:15959591-15959610 None:intergenic 45.0%
GCTACACATAATTAGGGTGG+TGG - chr8_3:15959606-15959625 None:intergenic 45.0%
CTGGCTACACATAATTAGGG+TGG - chr8_3:15959609-15959628 None:intergenic 45.0%
TCAGGTTTCATTCCGCACAA+AGG + chr8_3:15959765-15959784 Msa1279140:intron 45.0%
TAGGGTGGAAAACCTTTGTG+CGG - chr8_3:15959780-15959799 None:intergenic 45.0%
ATGGACCCAGAAATATGCCA+TGG + chr8_3:15960392-15960411 Msa1279140:CDS 45.0%
TGGACCCAGAAATATGCCAT+GGG + chr8_3:15960393-15960412 Msa1279140:CDS 45.0%
! ATATGCCATGGGTTAAGGGA+TGG + chr8_3:15960404-15960423 Msa1279140:exon 45.0%
!! TAATTAATTAAATATATTGA+TGG - chr8_3:15957260-15957279 None:intergenic 5.0%
CCTTAGGGTTTGAGGGTTTG+GGG - chr8_3:15957187-15957206 None:intergenic 50.0%
GACCTTAGGGTTTGAGGGTT+TGG - chr8_3:15957189-15957208 None:intergenic 50.0%
TTACCGAGATGGCCTCAAAG+CGG + chr8_3:15957341-15957360 Msa1279140:exon 50.0%
GGCCTCAAAGCGGATCAATA+AGG + chr8_3:15957351-15957370 Msa1279140:CDS 50.0%
! GGTTTGGGCATGGATTGTAG+AGG + chr8_3:15957583-15957602 Msa1279140:intron 50.0%
GATAAAGTGAACTGGGTGCC+TGG + chr8_3:15958331-15958350 Msa1279140:intron 50.0%
TAAAGTGAACTGGGTGCCTG+GGG + chr8_3:15958333-15958352 Msa1279140:intron 50.0%
CAAGCTACAATTATGGGCCC+AGG + chr8_3:15958625-15958644 Msa1279140:CDS 50.0%
GAAACACACCTCCCGCAAAT+GGG - chr8_3:15958657-15958676 None:intergenic 50.0%
AGAAACACACCTCCCGCAAA+TGG - chr8_3:15958658-15958677 None:intergenic 50.0%
GCTATCCCTCTCCCAATCTT+AGG + chr8_3:15959457-15959476 Msa1279140:intron 50.0%
CCTTGGATATTGTGAGGGCA+GGG - chr8_3:15959855-15959874 None:intergenic 50.0%
ACCTTGGATATTGTGAGGGC+AGG - chr8_3:15959856-15959875 None:intergenic 50.0%
ACCAGAGGATCATCTGGGTT+GGG - chr8_3:15960312-15960331 None:intergenic 50.0%
TGAGCAATTTCAGGGACCAG+AGG - chr8_3:15960327-15960346 None:intergenic 50.0%
CTAAGTATGAGGCCACTGCT+CGG + chr8_3:15960367-15960386 Msa1279140:CDS 50.0%
CCCCAAACCCTCAAACCCTA+AGG + chr8_3:15957184-15957203 Msa1279140:five_prime_UTR 55.0%
!! GATCCGCTTTGAGGCCATCT+CGG - chr8_3:15957347-15957366 None:intergenic 55.0%
ATACCAGCACTGCAAGAGGC+AGG - chr8_3:15957403-15957422 None:intergenic 55.0%
!! CGTGCTTTAGGGTTTGGGCA+TGG + chr8_3:15957573-15957592 Msa1279140:intron 55.0%
TCTAGCAGAAGGGATTCCCC+AGG - chr8_3:15958352-15958371 None:intergenic 55.0%
!! CCGCAAATGGGCTATCTCCT+GGG - chr8_3:15958645-15958664 None:intergenic 55.0%
CCCAGGAGATAGCCCATTTG+CGG + chr8_3:15958642-15958661 Msa1279140:CDS 55.0%
CCAGGAGATAGCCCATTTGC+GGG + chr8_3:15958643-15958662 Msa1279140:CDS 55.0%
CAGGGCTCCATTGCTCTTTC+AGG - chr8_3:15959837-15959856 None:intergenic 55.0%
CCCTGCCCTCACAATATCCA+AGG + chr8_3:15959852-15959871 Msa1279140:CDS 55.0%
TCCCAACCCAGATGATCCTC+TGG + chr8_3:15960308-15960327 Msa1279140:CDS 55.0%
GACCAGAGGATCATCTGGGT+TGG - chr8_3:15960313-15960332 None:intergenic 55.0%
CAGGGACCAGAGGATCATCT+GGG - chr8_3:15960317-15960336 None:intergenic 55.0%
TCAGGGACCAGAGGATCATC+TGG - chr8_3:15960318-15960337 None:intergenic 55.0%
CTTGGCCATCCCTTAACCCA+TGG - chr8_3:15960412-15960431 None:intergenic 55.0%
!! CCCGCAAATGGGCTATCTCC+TGG - chr8_3:15958646-15958665 None:intergenic 60.0%
GGAGATAGCCCATTTGCGGG+AGG + chr8_3:15958646-15958665 Msa1279140:CDS 60.0%
ATGAGGCCACTGCTCGGTCA+TGG + chr8_3:15960373-15960392 Msa1279140:CDS 60.0%
CCAGCACTGCAAGAGGCAGG+AGG - chr8_3:15957400-15957419 None:intergenic 65.0%
CCTCCTGCCTCTTGCAGTGC+TGG + chr8_3:15957397-15957416 Msa1279140:CDS 65.0%
CTGGGTCCATGACCGAGCAG+TGG - chr8_3:15960382-15960401 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 15957093 15960632 15957093 ID=Msa1279140;Name=Msa1279140
chr8_3 mRNA 15957093 15960632 15957093 ID=Msa1279140-mRNA-1;Parent=Msa1279140;Name=Msa1279140-mRNA-1;_AED=0.12;_eAED=0.12;_QI=129|1|1|1|0.75|0.6|5|213|148
chr8_3 exon 15957093 15957209 15957093 ID=Msa1279140-mRNA-1:exon:6115;Parent=Msa1279140-mRNA-1
chr8_3 exon 15957337 15957418 15957337 ID=Msa1279140-mRNA-1:exon:6116;Parent=Msa1279140-mRNA-1
chr8_3 exon 15958596 15958723 15958596 ID=Msa1279140-mRNA-1:exon:6117;Parent=Msa1279140-mRNA-1
chr8_3 exon 15959769 15959873 15959769 ID=Msa1279140-mRNA-1:exon:6118;Parent=Msa1279140-mRNA-1
chr8_3 exon 15960276 15960632 15960276 ID=Msa1279140-mRNA-1:exon:6119;Parent=Msa1279140-mRNA-1
chr8_3 five_prime_UTR 15957093 15957209 15957093 ID=Msa1279140-mRNA-1:five_prime_utr;Parent=Msa1279140-mRNA-1
chr8_3 five_prime_UTR 15957337 15957348 15957337 ID=Msa1279140-mRNA-1:five_prime_utr;Parent=Msa1279140-mRNA-1
chr8_3 CDS 15957349 15957418 15957349 ID=Msa1279140-mRNA-1:cds;Parent=Msa1279140-mRNA-1
chr8_3 CDS 15958596 15958723 15958596 ID=Msa1279140-mRNA-1:cds;Parent=Msa1279140-mRNA-1
chr8_3 CDS 15959769 15959873 15959769 ID=Msa1279140-mRNA-1:cds;Parent=Msa1279140-mRNA-1
chr8_3 CDS 15960276 15960419 15960276 ID=Msa1279140-mRNA-1:cds;Parent=Msa1279140-mRNA-1
chr8_3 three_prime_UTR 15960420 15960632 15960420 ID=Msa1279140-mRNA-1:three_prime_utr;Parent=Msa1279140-mRNA-1
Gene Sequence

>Msa1279140

ATGGCCTCAAAGCGGATCAATAAGGAATTGAAGGACTTGCAGAAGGATCCTCCTGCCTCTTGCAGTGCTGGCCCTGTCGCTGATGATATGTTCCATTGGCAAGCTACAATTATGGGCCCAGGAGATAGCCCATTTGCGGGAGGTGTGTTTCTTGTGCAAATTCACTTCCCTCCGGATTATCCTTTCAAACCACCCAAGGTTTCATTCCGCACAAAGGTTTTCCACCCTAATATCAACAGTAACGGTAGCATTTGCCTTGACATCCTGAAAGAGCAATGGAGCCCTGCCCTCACAATATCCAAGGTGCTACTGTCCATTTGTTCTCTGTTGACTGATCCCAACCCAGATGATCCTCTGGTCCCTGAAATTGCTCATATGTACAAGAGTGACAAAGCTAAGTATGAGGCCACTGCTCGGTCATGGACCCAGAAATATGCCATGGGTTAA
Protein sequence

>Msa1279140

MASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPGDSPFAGGVFLVQIHFPPDYPFKPPKVSFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAMG*