Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1439530 | XP_003600608.2 | 95.359 | 237 | 11 | 0 | 11 | 247 | 877 | 1113 | 8.47e-156 | 471 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1439530 | G7J7W5 | 95.359 | 237 | 11 | 0 | 11 | 247 | 877 | 1113 | 4.04e-156 | 471 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0013050 | Msa1439530 | -0.856084 | 4.084907e-62 | -8.615850e-47 |
| Msa0044710 | Msa1439530 | 0.838048 | 3.623968e-57 | -8.615850e-47 |
| Msa0067150 | Msa1439530 | 0.814779 | 1.294702e-51 | -8.615850e-47 |
| Msa0071240 | Msa1439530 | 0.816906 | 4.342271e-52 | -8.615850e-47 |
| Msa0111310 | Msa1439530 | 0.819579 | 1.078712e-52 | -8.615850e-47 |
| Msa0119850 | Msa1439530 | 0.829228 | 5.788136e-55 | -8.615850e-47 |
| Msa1388790 | Msa1439530 | -0.828358 | 9.399148e-55 | -8.615850e-47 |
| Msa1391490 | Msa1439530 | 0.817857 | 2.653201e-52 | -8.615850e-47 |
| Msa1398800 | Msa1439530 | 0.816438 | 5.528821e-52 | -8.615850e-47 |
| Msa1419800 | Msa1439530 | -0.801848 | 7.417621e-49 | -8.615850e-47 |
| Msa1427830 | Msa1439530 | 0.800706 | 1.270815e-48 | -8.615850e-47 |
| Msa1432400 | Msa1439530 | 0.954274 | 4.278398e-112 | -8.615850e-47 |
| Msa1439530 | Msa1440000 | 0.813903 | 2.022538e-51 | -8.615850e-47 |
| Msa1439530 | Msa1452470 | 0.802670 | 5.025920e-49 | -8.615850e-47 |
| Msa1439530 | Msa1453620 | 0.809607 | 1.740062e-50 | -8.615850e-47 |
| Msa1439530 | Msa1453780 | -0.836020 | 1.195011e-56 | -8.615850e-47 |
| Msa1439530 | Msa1465960 | 0.841690 | 4.078224e-58 | -8.615850e-47 |
| Msa0605170 | Msa1439530 | 0.815535 | 8.795492e-52 | -8.615850e-47 |
| Msa0607340 | Msa1439530 | -0.847467 | 1.135151e-59 | -8.615850e-47 |
| Msa0618010 | Msa1439530 | 0.826726 | 2.315683e-54 | -8.615850e-47 |
| Msa0646640 | Msa1439530 | 0.812117 | 4.982102e-51 | -8.615850e-47 |
| Msa0647450 | Msa1439530 | -0.813449 | 2.545010e-51 | -8.615850e-47 |
| Msa0671740 | Msa1439530 | 0.817425 | 3.320349e-52 | -8.615850e-47 |
| Msa0672120 | Msa1439530 | 0.814554 | 1.452268e-51 | -8.615850e-47 |
| Msa0705420 | Msa1439530 | 0.827322 | 1.667903e-54 | -8.615850e-47 |
| Msa0723130 | Msa1439530 | 0.808017 | 3.807224e-50 | -8.615850e-47 |
| Msa0756310 | Msa1439530 | 0.801972 | 6.996908e-49 | -8.615850e-47 |
| Msa0784860 | Msa1439530 | 0.806337 | 8.637695e-50 | -8.615850e-47 |
| Msa0795920 | Msa1439530 | 0.801495 | 8.763348e-49 | -8.615850e-47 |
| Msa0801360 | Msa1439530 | 0.806980 | 6.320694e-50 | -8.615850e-47 |
| Msa0804120 | Msa1439530 | 0.800270 | 1.559036e-48 | -8.615850e-47 |
| Msa0813720 | Msa1439530 | 0.801575 | 8.441671e-49 | -8.615850e-47 |
| Msa0835730 | Msa1439530 | 0.800504 | 1.397036e-48 | -8.615850e-47 |
| Msa0839830 | Msa1439530 | 0.815776 | 7.773055e-52 | -8.615850e-47 |
| Msa0842210 | Msa1439530 | 0.832802 | 7.676601e-56 | -8.615850e-47 |
| Msa0136390 | Msa1439530 | 0.824658 | 7.162289e-54 | -8.615850e-47 |
| Msa0142420 | Msa1439530 | 0.817732 | 2.830847e-52 | -8.615850e-47 |
| Msa0162770 | Msa1439530 | -0.807454 | 5.016308e-50 | -8.615850e-47 |
| Msa0178990 | Msa1439530 | 0.824797 | 6.643456e-54 | -8.615850e-47 |
| Msa0182930 | Msa1439530 | 0.811602 | 6.448625e-51 | -8.615850e-47 |
| Msa0197940 | Msa1439530 | -0.825822 | 3.801167e-54 | -8.615850e-47 |
| Msa0229490 | Msa1439530 | -0.809994 | 1.436784e-50 | -8.615850e-47 |
| Msa1236640 | Msa1439530 | -0.821775 | 3.374264e-53 | -8.615850e-47 |
| Msa1260130 | Msa1439530 | 0.881888 | 1.649574e-70 | -8.615850e-47 |
| Msa1262920 | Msa1439530 | 0.812818 | 3.500728e-51 | -8.615850e-47 |
| Msa1267260 | Msa1439530 | 0.831543 | 1.572384e-55 | -8.615850e-47 |
| Msa1282920 | Msa1439530 | 0.827738 | 1.325086e-54 | -8.615850e-47 |
| Msa1296880 | Msa1439530 | 0.833732 | 4.504643e-56 | -8.615850e-47 |
| Msa1300050 | Msa1439530 | 0.842169 | 3.046127e-58 | -8.615850e-47 |
| Msa1302100 | Msa1439530 | 0.822573 | 2.203981e-53 | -8.615850e-47 |
| Msa1302190 | Msa1439530 | -0.833018 | 6.783779e-56 | -8.615850e-47 |
| Msa1306430 | Msa1439530 | 0.835621 | 1.508642e-56 | -8.615850e-47 |
| Msa1322190 | Msa1439530 | 0.812057 | 5.134163e-51 | -8.615850e-47 |
| Msa0379410 | Msa1439530 | 0.831065 | 2.061809e-55 | -8.615850e-47 |
| Msa0380040 | Msa1439530 | 0.816271 | 6.027485e-52 | -8.615850e-47 |
| Msa0412190 | Msa1439530 | 0.801327 | 9.488420e-49 | -8.615850e-47 |
| Msa0429290 | Msa1439530 | 0.809493 | 1.841544e-50 | -8.615850e-47 |
| Msa0442200 | Msa1439530 | 0.828194 | 1.029371e-54 | -8.615850e-47 |
| Msa0472740 | Msa1439530 | 0.823789 | 1.146177e-53 | -8.615850e-47 |
| Msa0475240 | Msa1439530 | 0.827435 | 1.567362e-54 | -8.615850e-47 |
| Msa0475580 | Msa1439530 | 0.812653 | 3.804216e-51 | -8.615850e-47 |
| Msa1012830 | Msa1439530 | 0.819726 | 9.984763e-53 | -8.615850e-47 |
| Msa1047400 | Msa1439530 | 0.806957 | 6.391284e-50 | -8.615850e-47 |
| Msa1072460 | Msa1439530 | -0.829475 | 5.041605e-55 | -8.615850e-47 |
| Msa0244270 | Msa1439530 | 0.825903 | 3.637010e-54 | -8.615850e-47 |
| Msa0288240 | Msa1439530 | 0.815914 | 7.240368e-52 | -8.615850e-47 |
| Msa0326670 | Msa1439530 | 0.814675 | 1.365457e-51 | -8.615850e-47 |
| Msa0358170 | Msa1439530 | 0.820176 | 7.878231e-53 | -8.615850e-47 |
| Msa1143930 | Msa1439530 | -0.831362 | 1.742647e-55 | -8.615850e-47 |
| Msa1171870 | Msa1439530 | 0.827997 | 1.148223e-54 | -8.615850e-47 |
| Msa1187520 | Msa1439530 | 0.840933 | 6.449004e-58 | -8.615850e-47 |
| Msa1212760 | Msa1439530 | 0.836830 | 7.434981e-57 | -8.615850e-47 |
| Msa1217430 | Msa1439530 | -0.823007 | 1.746122e-53 | -8.615850e-47 |
| Msa0489610 | Msa1439530 | 0.801972 | 6.996908e-49 | -8.615850e-47 |
| Msa0519220 | Msa1439530 | 0.817146 | 3.835791e-52 | -8.615850e-47 |
| Msa0536650 | Msa1439530 | 0.803268 | 3.781222e-49 | -8.615850e-47 |
| Msa0553220 | Msa1439530 | -0.840634 | 7.726629e-58 | -8.615850e-47 |
| Msa0577120 | Msa1439530 | 0.801441 | 8.992714e-49 | -8.615850e-47 |
| Msa0870150 | Msa1439530 | 0.837901 | 3.954595e-57 | -8.615850e-47 |
| Msa0926460 | Msa1439530 | 0.800086 | 1.699898e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1439530 | MtrunA17_Chr3g0109551 | 95.359 | 237 | 11 | 0 | 11 | 247 | 877 | 1113 | 7.79e-160 | 471 |
| Msa1439530 | MtrunA17_Chr8g0375181 | 38.261 | 230 | 136 | 4 | 11 | 238 | 893 | 1118 | 1.60e-41 | 151 |
| Msa1439530 | MtrunA17_Chr8g0375191 | 36.574 | 216 | 133 | 3 | 11 | 226 | 816 | 1027 | 2.97e-38 | 142 |
| Msa1439530 | MtrunA17_Chr5g0435821 | 36.406 | 217 | 132 | 5 | 11 | 226 | 54 | 265 | 1.35e-35 | 133 |
| Msa1439530 | MtrunA17_Chr8g0375151 | 39.459 | 185 | 108 | 3 | 11 | 195 | 785 | 965 | 1.23e-34 | 131 |
| Msa1439530 | MtrunA17_Chr3g0094211 | 34.211 | 190 | 122 | 2 | 11 | 200 | 809 | 995 | 3.04e-33 | 127 |
| Msa1439530 | MtrunA17_Chr3g0109541 | 48.571 | 70 | 32 | 1 | 11 | 80 | 842 | 907 | 2.13e-14 | 72.4 |
| Msa1439530 | MtrunA17_Chr5g0433361 | 48.333 | 60 | 31 | 0 | 11 | 70 | 812 | 871 | 4.58e-14 | 71.2 |
| Msa1439530 | MtrunA17_Chr5g0433321 | 47.143 | 70 | 33 | 1 | 11 | 80 | 818 | 883 | 1.72e-13 | 69.7 |
| Msa1439530 | MtrunA17_Chr5g0433371 | 45.714 | 70 | 34 | 1 | 11 | 80 | 842 | 907 | 7.32e-13 | 67.8 |
| Msa1439530 | MtrunA17_Chr5g0433331 | 50.000 | 54 | 27 | 0 | 11 | 64 | 84 | 137 | 2.42e-12 | 63.5 |
| Msa1439530 | MtrunA17_Chr5g0433421 | 44.286 | 70 | 35 | 1 | 11 | 80 | 926 | 991 | 4.55e-12 | 65.5 |
| Msa1439530 | MtrunA17_Chr5g0433511 | 57.447 | 47 | 20 | 0 | 11 | 57 | 841 | 887 | 6.27e-12 | 65.1 |
| Msa1439530 | MtrunA17_Chr5g0433471 | 55.319 | 47 | 21 | 0 | 11 | 57 | 841 | 887 | 2.72e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1439530 | AT1G65780.1 | 38.991 | 218 | 116 | 3 | 11 | 228 | 805 | 1005 | 3.84e-46 | 164 |
| Msa1439530 | AT1G65810.3 | 37.799 | 209 | 124 | 2 | 11 | 219 | 790 | 992 | 2.87e-39 | 145 |
| Msa1439530 | AT1G65810.1 | 37.799 | 209 | 124 | 2 | 11 | 219 | 790 | 992 | 2.97e-39 | 145 |
| Msa1439530 | AT1G65810.2 | 30.622 | 209 | 105 | 3 | 11 | 219 | 790 | 958 | 3.76e-21 | 92.8 |
Find 102 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACCGTACACAGCTGATTTA+TGG | 0.121615 | tig0028819:+838 | None:intergenic |
| TGCATTGGTTCTATATAAAT+TGG | 0.180071 | tig0028819:+3415 | Msa1439530:three_prime_UTR |
| ATGATCAACAGTATAGATTT+TGG | 0.196305 | tig0028819:-3046 | None:intergenic |
| ATGTTTAAATTTGAATAAAT+TGG | 0.215794 | tig0028819:+2235 | Msa1439530:exon |
| TTGGACCGCCAGCAGTTTAA+AGG | 0.232481 | tig0028819:+3100 | Msa1439530:three_prime_UTR |
| AAACTCCAGGAAATTCTTCT+AGG | 0.257667 | tig0028819:-3149 | None:intergenic |
| ACGAGTTACTTTATATTGTA+TGG | 0.301395 | tig0028819:+1833 | Msa1439530:CDS |
| GCAAAATCAGGTGTTCTAAT+AGG | 0.316891 | tig0028819:+1998 | Msa1439530:CDS |
| TGATGAATAGTGGCTCCATT+TGG | 0.337044 | tig0028819:+920 | Msa1439530:CDS |
| AAGTGAAGGATACACTTTAC+AGG | 0.347382 | tig0028819:+2956 | Msa1439530:three_prime_UTR |
| AGGTATTGCCTCTGGATAAT+AGG | 0.349854 | tig0028819:+883 | Msa1439530:CDS |
| GAGGCAATACCTACATAAAC+AGG | 0.352166 | tig0028819:-872 | None:intergenic |
| TGCTATTTAGAAAAGCAAAA+TGG | 0.358339 | tig0028819:+1076 | Msa1439530:CDS |
| TCTCACCGGGAGATAAATAT+TGG | 0.372846 | tig0028819:+1763 | Msa1439530:CDS |
| AAAACTCTGCACTTATCTCT+TGG | 0.383353 | tig0028819:+3081 | Msa1439530:three_prime_UTR |
| CAGTTTAAAGGAGCCAATAC+TGG | 0.391632 | tig0028819:+3112 | Msa1439530:three_prime_UTR |
| GATAATTCTTCCCAACTGTT+GGG | 0.395250 | tig0028819:+1796 | Msa1439530:CDS |
| GTTCAATTTAAGATTCCATC+TGG | 0.396234 | tig0028819:+3451 | Msa1439530:three_prime_UTR |
| TATACCAGACAGCTTTGGTT+TGG | 0.397659 | tig0028819:+2806 | Msa1439530:three_prime_UTR |
| ATCTTGGATACCTCAGATAA+TGG | 0.405986 | tig0028819:-1919 | None:intergenic |
| TTCGTAGATGCTGCAAAATC+AGG | 0.409343 | tig0028819:+1986 | Msa1439530:CDS |
| ATCTTGTGGCAGATTATGAT+TGG | 0.412299 | tig0028819:-2163 | None:intergenic |
| GTTAATATCCCTCACCATCT+TGG | 0.413205 | tig0028819:-1935 | None:intergenic |
| GATGAATAGTGGCTCCATTT+GGG | 0.414157 | tig0028819:+921 | Msa1439530:CDS |
| TGCTGTCACTTGTTGACAGT+TGG | 0.423364 | tig0028819:+3235 | Msa1439530:three_prime_UTR |
| TGAAAGGCATCTGCTGCAAC+GGG | 0.428713 | tig0028819:+2854 | Msa1439530:three_prime_UTR |
| ATGTACCTAGAAGAATTTCC+TGG | 0.443729 | tig0028819:+3144 | Msa1439530:three_prime_UTR |
| GTAAGTTTGTAACATTGCTT+AGG | 0.447341 | tig0028819:+2912 | Msa1439530:three_prime_UTR |
| CACTTGAAAGTTGCATCAGC+AGG | 0.449001 | tig0028819:-1729 | None:intergenic |
| GTTTATGTAGGTATTGCCTC+TGG | 0.451761 | tig0028819:+875 | Msa1439530:CDS |
| TGATAATTCTTCCCAACTGT+TGG | 0.453460 | tig0028819:+1795 | Msa1439530:CDS |
| TCAGTTGGAGCGAATCAAAT+TGG | 0.457196 | tig0028819:-2209 | None:intergenic |
| AGTCATGGAAAATATGTGAT+TGG | 0.458710 | tig0028819:-3185 | None:intergenic |
| GGAAAATATGTGATTGGCTC+AGG | 0.459589 | tig0028819:-3179 | None:intergenic |
| CACTTTACAGGGTAAAATGC+GGG | 0.462226 | tig0028819:+2968 | Msa1439530:three_prime_UTR |
| GTGGGTGGCATCGGTCTCAC+CGG | 0.464293 | tig0028819:+1749 | Msa1439530:CDS |
| CTCAGGATATTTCAAACTCC+AGG | 0.473682 | tig0028819:-3162 | None:intergenic |
| TATTGGCTCCTTTAAACTGC+TGG | 0.474895 | tig0028819:-3108 | None:intergenic |
| AACTTTCAAGTGGGTGGCAT+CGG | 0.480977 | tig0028819:+1740 | Msa1439530:CDS |
| AAATTTAAACATCCCTCAGT+TGG | 0.482156 | tig0028819:-2224 | None:intergenic |
| CCAACTGTTGGGGCTGTGCA+AGG | 0.486755 | tig0028819:+1807 | Msa1439530:CDS |
| GTTTGAATATTCAAATTAGC+CGG | 0.487382 | tig0028819:-2141 | None:intergenic |
| ACACGTGGTTTGTGAATACT+AGG | 0.489120 | tig0028819:-3310 | None:intergenic |
| GATCATATACCAGACAGCTT+TGG | 0.493186 | tig0028819:+2801 | Msa1439530:three_prime_UTR |
| ACATTTCTGTCATCCAGTAT+TGG | 0.494026 | tig0028819:-3125 | None:intergenic |
| AAATTAGCCGGCCATCTCAA+TGG | 0.496953 | tig0028819:-2129 | None:intergenic |
| TGGTCACATATTAACTGCAT+TGG | 0.500002 | tig0028819:-2189 | None:intergenic |
| TTGAAAGGCATCTGCTGCAA+CGG | 0.501244 | tig0028819:+2853 | Msa1439530:three_prime_UTR |
| ATAGAGTAATACCTCCCAAA+TGG | 0.512547 | tig0028819:-935 | None:intergenic |
| CTGCTGATGCAACTTTCAAG+TGG | 0.526338 | tig0028819:+1730 | Msa1439530:CDS |
| CCTTGCACAGCCCCAACAGT+TGG | 0.528221 | tig0028819:-1807 | None:intergenic |
| CTTGCACAGCCCCAACAGTT+GGG | 0.530461 | tig0028819:-1806 | None:intergenic |
| GGTGAAACTTTGATGAATAG+TGG | 0.531384 | tig0028819:+910 | Msa1439530:CDS |
| CTCTATGATGCGGTAGCTCG+AGG | 0.534860 | tig0028819:+952 | Msa1439530:CDS |
| GACTTGACCAAGCTCAATCA+TGG | 0.535026 | tig0028819:-1028 | None:intergenic |
| AGAGAACGGCGATACTATAG+AGG | 0.539364 | tig0028819:-3213 | None:intergenic |
| TGTGGTTCCATTGAGATGGC+CGG | 0.540790 | tig0028819:+2122 | Msa1439530:CDS |
| ATTCTGTGGTTCCATTGAGA+TGG | 0.547640 | tig0028819:+2118 | Msa1439530:CDS |
| TGCTGATGCAACTTTCAAGT+GGG | 0.548305 | tig0028819:+1731 | Msa1439530:CDS |
| ATAATTCTTCCCAACTGTTG+GGG | 0.549103 | tig0028819:+1797 | Msa1439530:CDS |
| AACTGCATTGGATCATCTTG+TGG | 0.551955 | tig0028819:-2177 | None:intergenic |
| TGCCTCTGGATAATAGGTAA+TGG | 0.555421 | tig0028819:+889 | Msa1439530:CDS |
| CAACTCCAATATTTATCTCC+CGG | 0.555829 | tig0028819:-1768 | None:intergenic |
| TTGTAACATTGCTTAGGACG+AGG | 0.558423 | tig0028819:+2918 | Msa1439530:three_prime_UTR |
| AATTTGATTCGCTCCAACTG+AGG | 0.559577 | tig0028819:+2211 | Msa1439530:CDS |
| CAGTTACCGCAGGGATTCTG+TGG | 0.568813 | tig0028819:+2104 | Msa1439530:intron |
| ACATATTCTCTTGCAATCCT+CGG | 0.570159 | tig0028819:-1704 | None:intergenic |
| GCAACTGCCATGATTGAGCT+TGG | 0.570385 | tig0028819:+1021 | Msa1439530:CDS |
| ATTTGATTCGCTCCAACTGA+GGG | 0.572062 | tig0028819:+2212 | Msa1439530:CDS |
| ACTATAGAGGATCCAAGTCA+TGG | 0.575794 | tig0028819:-3200 | None:intergenic |
| ATGGACCATTGACATTCTTG+AGG | 0.582221 | tig0028819:+1852 | Msa1439530:CDS |
| CTGAGGTATCCAAGATGGTG+AGG | 0.582989 | tig0028819:+1926 | Msa1439530:CDS |
| GTTTGACTCCTCTGAAGTGA+AGG | 0.589484 | tig0028819:+2942 | Msa1439530:three_prime_UTR |
| TGGCTCCTTTAAACTGCTGG+CGG | 0.590251 | tig0028819:-3105 | None:intergenic |
| CACCATTACCTATTATCCAG+AGG | 0.591718 | tig0028819:-891 | None:intergenic |
| ATTATCTGAGGTATCCAAGA+TGG | 0.596070 | tig0028819:+1921 | Msa1439530:CDS |
| TGTAACATTGCTTAGGACGA+GGG | 0.596364 | tig0028819:+2919 | Msa1439530:three_prime_UTR |
| TGACAGTTGGATCAATTCAA+CGG | 0.596765 | tig0028819:+3248 | Msa1439530:three_prime_UTR |
| TATTCCTTGTCATATCCAGA+TGG | 0.601442 | tig0028819:-3466 | None:intergenic |
| AAGTGTATCCTTCACTTCAG+AGG | 0.601635 | tig0028819:-2950 | None:intergenic |
| TCTATGATGCGGTAGCTCGA+GGG | 0.604030 | tig0028819:+953 | Msa1439530:CDS |
| TGAGGTATCCAAGATGGTGA+GGG | 0.607781 | tig0028819:+1927 | Msa1439530:CDS |
| TGATGCAACTTTCAAGTGGG+TGG | 0.615894 | tig0028819:+1734 | Msa1439530:CDS |
| GGAGGTATTACTCTATGATG+CGG | 0.630883 | tig0028819:+942 | Msa1439530:CDS |
| AGTGAAGGATACACTTTACA+GGG | 0.631647 | tig0028819:+2957 | Msa1439530:three_prime_UTR |
| ACAATAAACTGATCAAGACT+AGG | 0.634406 | tig0028819:-2891 | None:intergenic |
| CAACAAGTGACAGCAGAGAA+CGG | 0.634620 | tig0028819:-3227 | None:intergenic |
| ATTTAGAAAAGCAAAATGGA+AGG | 0.637265 | tig0028819:+1080 | Msa1439530:CDS |
| ACTTGAAAGTTGCATCAGCA+GGG | 0.642138 | tig0028819:-1728 | None:intergenic |
| ATGGAATCTTAAATTGAACC+AGG | 0.650212 | tig0028819:-3447 | None:intergenic |
| GAATAGTGGCTCCATTTGGG+AGG | 0.654919 | tig0028819:+924 | Msa1439530:CDS |
| ACTTTACAGGGTAAAATGCG+GGG | 0.655925 | tig0028819:+2969 | Msa1439530:three_prime_UTR |
| GTAACATTGCTTAGGACGAG+GGG | 0.658026 | tig0028819:+2920 | Msa1439530:three_prime_UTR |
| CTAGACGAAATATACACACG+TGG | 0.664158 | tig0028819:-3325 | None:intergenic |
| ATGATTGAGCTTGGTCAAGT+CGG | 0.664581 | tig0028819:+1030 | Msa1439530:CDS |
| CTGCTGCAACGGGAACCGCA+AGG | 0.666298 | tig0028819:+2864 | Msa1439530:three_prime_UTR |
| GATTCCATCTGGATATGACA+AGG | 0.672484 | tig0028819:+3462 | Msa1439530:three_prime_UTR |
| ACACTTTACAGGGTAAAATG+CGG | 0.682346 | tig0028819:+2967 | Msa1439530:three_prime_UTR |
| ATAGTGCTGATGAGGATGAG+AGG | 0.695364 | tig0028819:+983 | Msa1439530:CDS |
| AGGCAATACCTACATAAACA+GGG | 0.699674 | tig0028819:-871 | None:intergenic |
| TCAAGACTAGGCAGACCTTG+CGG | 0.711545 | tig0028819:-2879 | None:intergenic |
| GGCAAGAATCAAGAGCACCG+AGG | 0.752236 | tig0028819:+1687 | Msa1439530:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATCTTATCATAATTAT+AGG | + | tig0028819:1633-1652 | Msa1439530:intron | 10.0% |
| !! | ATGTTTAAATTTGAATAAAT+TGG | + | tig0028819:2235-2254 | Msa1439530:exon | 10.0% |
| !!! | TTCTTTATTTTTTCAAAAAA+AGG | - | tig0028819:2314-2333 | None:intergenic | 10.0% |
| !! | AATATCATTTGATAAATTTG+TGG | - | tig0028819:1406-1425 | None:intergenic | 15.0% |
| !!! | AATATGCATATTATTTTTGT+AGG | + | tig0028819:2356-2375 | Msa1439530:intron | 15.0% |
| !!! | AAATAATCTAAAATAAGACA+TGG | - | tig0028819:2509-2528 | None:intergenic | 15.0% |
| !!! | CTTTCAAAACATAAAATTTT+AGG | - | tig0028819:2840-2859 | None:intergenic | 15.0% |
| !!! | CTAAAATTTTATGTTTTGAA+AGG | + | tig0028819:2838-2857 | Msa1439530:three_prime_UTR | 15.0% |
| !! | CATGTCTTCAATAATAAATA+AGG | - | tig0028819:1138-1157 | None:intergenic | 20.0% |
| !! | CTTATTTATTATTGAAGACA+TGG | + | tig0028819:1136-1155 | Msa1439530:intron | 20.0% |
| !!! | TATTTTTTCAAAAAAAGGAG+AGG | - | tig0028819:2309-2328 | None:intergenic | 20.0% |
| !! | AAAGAGATATTAGAACATTA+TGG | + | tig0028819:2419-2438 | Msa1439530:intron | 20.0% |
| !!! | ATATTTCTAAATTCTGAAGT+AGG | + | tig0028819:2535-2554 | Msa1439530:intron | 20.0% |
| !! | ATTTACTATAAGTTTCAAGA+TGG | - | tig0028819:2616-2635 | None:intergenic | 20.0% |
| !! | ACTTATAGTAAATCAAGATT+AGG | + | tig0028819:2623-2642 | Msa1439530:intron | 20.0% |
| !! | CTTATAGTAAATCAAGATTA+GGG | + | tig0028819:2624-2643 | Msa1439530:intron | 20.0% |
| !! | TTATTTATGAACTTTCCAAT+CGG | + | tig0028819:2668-2687 | Msa1439530:intron | 20.0% |
| !!! | TTTTCCATTTTCAGAAATAT+TGG | + | tig0028819:2771-2790 | Msa1439530:intron | 20.0% |
| !!! | AAATCCAATATTTCTGAAAA+TGG | - | tig0028819:2778-2797 | None:intergenic | 20.0% |
| !!! | TTTTCAGAAATATTGGATTT+TGG | + | tig0028819:2778-2797 | Msa1439530:intron | 20.0% |
| !!! | TTTCAGAAATATTGGATTTT+GGG | + | tig0028819:2779-2798 | Msa1439530:intron | 20.0% |
| !! | TGCTATTTAGAAAAGCAAAA+TGG | + | tig0028819:1076-1095 | Msa1439530:CDS | 25.0% |
| ! | ATTTAGAAAAGCAAAATGGA+AGG | + | tig0028819:1080-1099 | Msa1439530:CDS | 25.0% |
| ! | AGTTTCTTTCCTAATTACAT+AGG | + | tig0028819:1173-1192 | Msa1439530:intron | 25.0% |
| ! | CTTCTATATGGGATAAATAA+TGG | - | tig0028819:1229-1248 | None:intergenic | 25.0% |
| ! | AGATTAGGAATCTTCTATAT+GGG | - | tig0028819:1240-1259 | None:intergenic | 25.0% |
| ! | AAGATTAGGAATCTTCTATA+TGG | - | tig0028819:1241-1260 | None:intergenic | 25.0% |
| !! | ATCTCAATACCTTTTCTTTA+AGG | - | tig0028819:1488-1507 | None:intergenic | 25.0% |
| !! | GCATTTGTTAATTGTGATAA+TGG | - | tig0028819:1535-1554 | None:intergenic | 25.0% |
| ! | TAAGCTGCTTAAAAAATCTA+GGG | - | tig0028819:1580-1599 | None:intergenic | 25.0% |
| ! | TTAAGCTGCTTAAAAAATCT+AGG | - | tig0028819:1581-1600 | None:intergenic | 25.0% |
| !! | ACGAGTTACTTTATATTGTA+TGG | + | tig0028819:1833-1852 | Msa1439530:CDS | 25.0% |
| ! | GTTTGAATATTCAAATTAGC+CGG | - | tig0028819:2144-2163 | None:intergenic | 25.0% |
| ! | TATTTATGAACTTTCCAATC+GGG | + | tig0028819:2669-2688 | Msa1439530:intron | 25.0% |
| !! | TCTTTTCTTTATTGACATTG+AGG | + | tig0028819:2731-2750 | Msa1439530:intron | 25.0% |
| !! | ATGATCAACAGTATAGATTT+TGG | - | tig0028819:3049-3068 | None:intergenic | 25.0% |
| !! | ATTTTCTGTATATACGCATA+AGG | + | tig0028819:3352-3371 | Msa1439530:three_prime_UTR | 25.0% |
| !! | TTTTCTGTATATACGCATAA+GGG | + | tig0028819:3353-3372 | Msa1439530:three_prime_UTR | 25.0% |
| !!! | AGTAAAACATTTGCCTTTTT+TGG | + | tig0028819:3389-3408 | Msa1439530:three_prime_UTR | 25.0% |
| !!! | GTAAAACATTTGCCTTTTTT+GGG | + | tig0028819:3390-3409 | Msa1439530:three_prime_UTR | 25.0% |
| !!! | TGCATTGGTTCTATATAAAT+TGG | + | tig0028819:3415-3434 | Msa1439530:three_prime_UTR | 25.0% |
| !! | ATAAATTGGATTTTCATTCC+TGG | + | tig0028819:3429-3448 | Msa1439530:three_prime_UTR | 25.0% |
| TAGGAATTGCCTATGTAATT+AGG | - | tig0028819:1185-1204 | None:intergenic | 30.0% | |
| CAAGGAAACATGTTAAGATT+AGG | - | tig0028819:1255-1274 | None:intergenic | 30.0% | |
| TAACAGGATACATTACAACA+AGG | - | tig0028819:1273-1292 | None:intergenic | 30.0% | |
| ATCATTTACATTGCGTTTGA+TGG | - | tig0028819:1296-1315 | None:intergenic | 30.0% | |
| TTGTGGTGTGAGAAAAATTT+GGG | - | tig0028819:1389-1408 | None:intergenic | 30.0% | |
| TTTGTGGTGTGAGAAAAATT+TGG | - | tig0028819:1390-1409 | None:intergenic | 30.0% | |
| ATCCTCTTTCCTTAAAGAAA+AGG | + | tig0028819:1476-1495 | Msa1439530:intron | 30.0% | |
| !! | TACCTTTTCTTTAAGGAAAG+AGG | - | tig0028819:1481-1500 | None:intergenic | 30.0% |
| !! | TTGTGATAATGGTTAAAGAG+TGG | - | tig0028819:1524-1543 | None:intergenic | 30.0% |
| ! | TCAAAGTTTTCTGATCTCTA+TGG | + | tig0028819:1666-1685 | Msa1439530:CDS | 30.0% |
| ! | ATTTTCCTCAAGAATGTCAA+TGG | - | tig0028819:1860-1879 | None:intergenic | 30.0% |
| !!! | ATGTTCAGATTTTGAAGCTT+TGG | + | tig0028819:1887-1906 | Msa1439530:CDS | 30.0% |
| !!! | TGTTCAGATTTTGAAGCTTT+GGG | + | tig0028819:1888-1907 | Msa1439530:CDS | 30.0% |
| TAATATAATCAGTTACCGCA+GGG | + | tig0028819:2095-2114 | Msa1439530:intron | 30.0% | |
| AAATTTAAACATCCCTCAGT+TGG | - | tig0028819:2227-2246 | None:intergenic | 30.0% | |
| !!! | AAGTTTGTTCTTGCCTTTTT+TGG | + | tig0028819:2467-2486 | Msa1439530:intron | 30.0% |
| TGAAATTGCAGTTCCAAAAA+AGG | - | tig0028819:2483-2502 | None:intergenic | 30.0% | |
| !!! | TTTTTGGAACTGCAATTTCA+TGG | + | tig0028819:2483-2502 | Msa1439530:intron | 30.0% |
| TTTCTTTATTGACATTGAGG+TGG | + | tig0028819:2734-2753 | Msa1439530:intron | 30.0% | |
| ACAATAAACTGATCAAGACT+AGG | - | tig0028819:2894-2913 | None:intergenic | 30.0% | |
| GTAAGTTTGTAACATTGCTT+AGG | + | tig0028819:2912-2931 | Msa1439530:three_prime_UTR | 30.0% | |
| AGTCATGGAAAATATGTGAT+TGG | - | tig0028819:3188-3207 | None:intergenic | 30.0% | |
| ! | ATCACATATTTTCCATGACT+TGG | + | tig0028819:3188-3207 | Msa1439530:three_prime_UTR | 30.0% |
| ! | GATCAAAGCTGTATGTTTTT+AGG | + | tig0028819:3277-3296 | Msa1439530:three_prime_UTR | 30.0% |
| ATGGAATCTTAAATTGAACC+AGG | - | tig0028819:3450-3469 | None:intergenic | 30.0% | |
| ! | GTTCAATTTAAGATTCCATC+TGG | + | tig0028819:3451-3470 | Msa1439530:three_prime_UTR | 30.0% |
| ! | GTACTTTTCCCTGTTTATGT+AGG | + | tig0028819:863-882 | Msa1439530:CDS | 35.0% |
| AGGCAATACCTACATAAACA+GGG | - | tig0028819:874-893 | None:intergenic | 35.0% | |
| GGTGAAACTTTGATGAATAG+TGG | + | tig0028819:910-929 | Msa1439530:CDS | 35.0% | |
| ATAGAGTAATACCTCCCAAA+TGG | - | tig0028819:938-957 | None:intergenic | 35.0% | |
| ATTCCTAGTTAGTCAATCAG+CGG | + | tig0028819:1198-1217 | Msa1439530:intron | 35.0% | |
| GATATTCATTACAGCTCAGT+AGG | + | tig0028819:1420-1439 | Msa1439530:intron | 35.0% | |
| TCACAATTAACAAATGCAGC+AGG | + | tig0028819:1538-1557 | Msa1439530:intron | 35.0% | |
| ACATATTCTCTTGCAATCCT+CGG | - | tig0028819:1707-1726 | None:intergenic | 35.0% | |
| CAACTCCAATATTTATCTCC+CGG | - | tig0028819:1771-1790 | None:intergenic | 35.0% | |
| TGATAATTCTTCCCAACTGT+TGG | + | tig0028819:1795-1814 | Msa1439530:CDS | 35.0% | |
| GATAATTCTTCCCAACTGTT+GGG | + | tig0028819:1796-1815 | Msa1439530:CDS | 35.0% | |
| ATAATTCTTCCCAACTGTTG+GGG | + | tig0028819:1797-1816 | Msa1439530:CDS | 35.0% | |
| ATCTTGGATACCTCAGATAA+TGG | - | tig0028819:1922-1941 | None:intergenic | 35.0% | |
| ! | ATTATCTGAGGTATCCAAGA+TGG | + | tig0028819:1921-1940 | Msa1439530:CDS | 35.0% |
| ! | GGGATATTAACATCTTTTGC+AGG | + | tig0028819:1947-1966 | Msa1439530:CDS | 35.0% |
| GCAAAATCAGGTGTTCTAAT+AGG | + | tig0028819:1998-2017 | Msa1439530:CDS | 35.0% | |
| ! | AGCTTCACATTTTCAACAAG+TGG | + | tig0028819:2048-2067 | Msa1439530:intron | 35.0% |
| CTAATATAATCAGTTACCGC+AGG | + | tig0028819:2094-2113 | Msa1439530:intron | 35.0% | |
| ATCTTGTGGCAGATTATGAT+TGG | - | tig0028819:2166-2185 | None:intergenic | 35.0% | |
| TGGTCACATATTAACTGCAT+TGG | - | tig0028819:2192-2211 | None:intergenic | 35.0% | |
| GACATATAAGCTAGGAACAA+AGG | - | tig0028819:2594-2613 | None:intergenic | 35.0% | |
| TCAAGATGGACATATAAGCT+AGG | - | tig0028819:2602-2621 | None:intergenic | 35.0% | |
| AAGTGAAGGATACACTTTAC+AGG | + | tig0028819:2956-2975 | Msa1439530:three_prime_UTR | 35.0% | |
| AGTGAAGGATACACTTTACA+GGG | + | tig0028819:2957-2976 | Msa1439530:three_prime_UTR | 35.0% | |
| ACACTTTACAGGGTAAAATG+CGG | + | tig0028819:2967-2986 | Msa1439530:three_prime_UTR | 35.0% | |
| AAAACTCTGCACTTATCTCT+TGG | + | tig0028819:3081-3100 | Msa1439530:three_prime_UTR | 35.0% | |
| ACATTTCTGTCATCCAGTAT+TGG | - | tig0028819:3128-3147 | None:intergenic | 35.0% | |
| ATGTACCTAGAAGAATTTCC+TGG | + | tig0028819:3144-3163 | Msa1439530:three_prime_UTR | 35.0% | |
| AAACTCCAGGAAATTCTTCT+AGG | - | tig0028819:3152-3171 | None:intergenic | 35.0% | |
| TGACAGTTGGATCAATTCAA+CGG | + | tig0028819:3248-3267 | Msa1439530:three_prime_UTR | 35.0% | |
| AACCAATGCAAACCCAAAAA+AGG | - | tig0028819:3405-3424 | None:intergenic | 35.0% | |
| GAGGCAATACCTACATAAAC+AGG | - | tig0028819:875-894 | None:intergenic | 40.0% | |
| ! | GTTTATGTAGGTATTGCCTC+TGG | + | tig0028819:875-894 | Msa1439530:CDS | 40.0% |
| ! | AGGTATTGCCTCTGGATAAT+AGG | + | tig0028819:883-902 | Msa1439530:CDS | 40.0% |
| TGCCTCTGGATAATAGGTAA+TGG | + | tig0028819:889-908 | Msa1439530:CDS | 40.0% | |
| CACCATTACCTATTATCCAG+AGG | - | tig0028819:894-913 | None:intergenic | 40.0% | |
| TGATGAATAGTGGCTCCATT+TGG | + | tig0028819:920-939 | Msa1439530:CDS | 40.0% | |
| GATGAATAGTGGCTCCATTT+GGG | + | tig0028819:921-940 | Msa1439530:CDS | 40.0% | |
| !! | GGAGGTATTACTCTATGATG+CGG | + | tig0028819:942-961 | Msa1439530:CDS | 40.0% |
| !!! | GTGTTTTCATAGTGCTGATG+AGG | + | tig0028819:975-994 | Msa1439530:CDS | 40.0% |
| ATGATTGAGCTTGGTCAAGT+CGG | + | tig0028819:1030-1049 | Msa1439530:CDS | 40.0% | |
| ! | AATCCGCTGATTGACTAACT+AGG | - | tig0028819:1204-1223 | None:intergenic | 40.0% |
| ! | ACATTGCGTTTGATGGTAAC+AGG | - | tig0028819:1289-1308 | None:intergenic | 40.0% |
| ACTTGAAAGTTGCATCAGCA+GGG | - | tig0028819:1731-1750 | None:intergenic | 40.0% | |
| ! | TGCTGATGCAACTTTCAAGT+GGG | + | tig0028819:1731-1750 | Msa1439530:CDS | 40.0% |
| TCTCACCGGGAGATAAATAT+TGG | + | tig0028819:1763-1782 | Msa1439530:CDS | 40.0% | |
| ATGGACCATTGACATTCTTG+AGG | + | tig0028819:1852-1871 | Msa1439530:CDS | 40.0% | |
| ! | GGATGTTTTGCCATTATCTG+AGG | + | tig0028819:1909-1928 | Msa1439530:CDS | 40.0% |
| GTTAATATCCCTCACCATCT+TGG | - | tig0028819:1938-1957 | None:intergenic | 40.0% | |
| TTCGTAGATGCTGCAAAATC+AGG | + | tig0028819:1986-2005 | Msa1439530:CDS | 40.0% | |
| ATTCTGTGGTTCCATTGAGA+TGG | + | tig0028819:2118-2137 | Msa1439530:CDS | 40.0% | |
| AACTGCATTGGATCATCTTG+TGG | - | tig0028819:2180-2199 | None:intergenic | 40.0% | |
| TCAGTTGGAGCGAATCAAAT+TGG | - | tig0028819:2212-2231 | None:intergenic | 40.0% | |
| ! | AATTTGATTCGCTCCAACTG+AGG | + | tig0028819:2211-2230 | Msa1439530:CDS | 40.0% |
| ! | ATTTGATTCGCTCCAACTGA+GGG | + | tig0028819:2212-2231 | Msa1439530:CDS | 40.0% |
| ATTCAAGAGAGGTGAGAAGA+GGG | - | tig0028819:2268-2287 | None:intergenic | 40.0% | |
| AATTCAAGAGAGGTGAGAAG+AGG | - | tig0028819:2269-2288 | None:intergenic | 40.0% | |
| !! | AAAGGAGAGGTTTTGTAGCA+GGG | - | tig0028819:2296-2315 | None:intergenic | 40.0% |
| !! | AAAAGGAGAGGTTTTGTAGC+AGG | - | tig0028819:2297-2316 | None:intergenic | 40.0% |
| GATCATATACCAGACAGCTT+TGG | + | tig0028819:2801-2820 | Msa1439530:three_prime_UTR | 40.0% | |
| ! | TATACCAGACAGCTTTGGTT+TGG | + | tig0028819:2806-2825 | Msa1439530:three_prime_UTR | 40.0% |
| ! | TTTTCCAAACCAAAGCTGTC+TGG | - | tig0028819:2813-2832 | None:intergenic | 40.0% |
| TTGTAACATTGCTTAGGACG+AGG | + | tig0028819:2918-2937 | Msa1439530:three_prime_UTR | 40.0% | |
| TGTAACATTGCTTAGGACGA+GGG | + | tig0028819:2919-2938 | Msa1439530:three_prime_UTR | 40.0% | |
| AAGTGTATCCTTCACTTCAG+AGG | - | tig0028819:2953-2972 | None:intergenic | 40.0% | |
| CACTTTACAGGGTAAAATGC+GGG | + | tig0028819:2968-2987 | Msa1439530:three_prime_UTR | 40.0% | |
| ACTTTACAGGGTAAAATGCG+GGG | + | tig0028819:2969-2988 | Msa1439530:three_prime_UTR | 40.0% | |
| !! | TATTGGCTCCTTTAAACTGC+TGG | - | tig0028819:3111-3130 | None:intergenic | 40.0% |
| CAGTTTAAAGGAGCCAATAC+TGG | + | tig0028819:3112-3131 | Msa1439530:three_prime_UTR | 40.0% | |
| CTCAGGATATTTCAAACTCC+AGG | - | tig0028819:3165-3184 | None:intergenic | 40.0% | |
| ! | GGAAAATATGTGATTGGCTC+AGG | - | tig0028819:3182-3201 | None:intergenic | 40.0% |
| ACTATAGAGGATCCAAGTCA+TGG | - | tig0028819:3203-3222 | None:intergenic | 40.0% | |
| ! | ACACGTGGTTTGTGAATACT+AGG | - | tig0028819:3313-3332 | None:intergenic | 40.0% |
| CTAGACGAAATATACACACG+TGG | - | tig0028819:3328-3347 | None:intergenic | 40.0% | |
| !!! | TGCCTTTTTTGGGTTTGCAT+TGG | + | tig0028819:3400-3419 | Msa1439530:three_prime_UTR | 40.0% |
| !! | ATAGTGCTGATGAGGATGAG+AGG | + | tig0028819:983-1002 | Msa1439530:CDS | 45.0% |
| GACTTGACCAAGCTCAATCA+TGG | - | tig0028819:1031-1050 | None:intergenic | 45.0% | |
| ! | CTAAGCAAACTGACTGGTCA+GGG | - | tig0028819:1365-1384 | None:intergenic | 45.0% |
| ! | TCTAAGCAAACTGACTGGTC+AGG | - | tig0028819:1366-1385 | None:intergenic | 45.0% |
| TTGGGTCTAAGCAAACTGAC+TGG | - | tig0028819:1371-1390 | None:intergenic | 45.0% | |
| CACTTGAAAGTTGCATCAGC+AGG | - | tig0028819:1732-1751 | None:intergenic | 45.0% | |
| CTGCTGATGCAACTTTCAAG+TGG | + | tig0028819:1730-1749 | Msa1439530:CDS | 45.0% | |
| ! | TGATGCAACTTTCAAGTGGG+TGG | + | tig0028819:1734-1753 | Msa1439530:CDS | 45.0% |
| ! | AACTTTCAAGTGGGTGGCAT+CGG | + | tig0028819:1740-1759 | Msa1439530:CDS | 45.0% |
| ! | TGAGGTATCCAAGATGGTGA+GGG | + | tig0028819:1927-1946 | Msa1439530:CDS | 45.0% |
| AAATTAGCCGGCCATCTCAA+TGG | - | tig0028819:2132-2151 | None:intergenic | 45.0% | |
| GCAGGGACAAAATTCAAGAG+AGG | - | tig0028819:2279-2298 | None:intergenic | 45.0% | |
| !! | TTGAAAGGCATCTGCTGCAA+CGG | + | tig0028819:2853-2872 | Msa1439530:three_prime_UTR | 45.0% |
| GTAACATTGCTTAGGACGAG+GGG | + | tig0028819:2920-2939 | Msa1439530:three_prime_UTR | 45.0% | |
| !! | GTTTGACTCCTCTGAAGTGA+AGG | + | tig0028819:2942-2961 | Msa1439530:three_prime_UTR | 45.0% |
| AGAGAACGGCGATACTATAG+AGG | - | tig0028819:3216-3235 | None:intergenic | 45.0% | |
| CAACAAGTGACAGCAGAGAA+CGG | - | tig0028819:3230-3249 | None:intergenic | 45.0% | |
| ! | TGCTGTCACTTGTTGACAGT+TGG | + | tig0028819:3235-3254 | Msa1439530:three_prime_UTR | 45.0% |
| GAATAGTGGCTCCATTTGGG+AGG | + | tig0028819:924-943 | Msa1439530:CDS | 50.0% | |
| TCTATGATGCGGTAGCTCGA+GGG | + | tig0028819:953-972 | Msa1439530:CDS | 50.0% | |
| GCAACTGCCATGATTGAGCT+TGG | + | tig0028819:1021-1040 | Msa1439530:CDS | 50.0% | |
| ! | CTGAGGTATCCAAGATGGTG+AGG | + | tig0028819:1926-1945 | Msa1439530:CDS | 50.0% |
| ATGGAACCACAGAATCCCTG+CGG | - | tig0028819:2113-2132 | None:intergenic | 50.0% | |
| TGTGGTTCCATTGAGATGGC+CGG | + | tig0028819:2122-2141 | Msa1439530:CDS | 50.0% | |
| !! | TGAAAGGCATCTGCTGCAAC+GGG | + | tig0028819:2854-2873 | Msa1439530:three_prime_UTR | 50.0% |
| TCAAGACTAGGCAGACCTTG+CGG | - | tig0028819:2882-2901 | None:intergenic | 50.0% | |
| TTGGACCGCCAGCAGTTTAA+AGG | + | tig0028819:3100-3119 | Msa1439530:three_prime_UTR | 50.0% | |
| TGGCTCCTTTAAACTGCTGG+CGG | - | tig0028819:3108-3127 | None:intergenic | 50.0% | |
| CTCTATGATGCGGTAGCTCG+AGG | + | tig0028819:952-971 | Msa1439530:CDS | 55.0% | |
| !! | GGCAAGAATCAAGAGCACCG+AGG | + | tig0028819:1687-1706 | Msa1439530:CDS | 55.0% |
| CTTGCACAGCCCCAACAGTT+GGG | - | tig0028819:1809-1828 | None:intergenic | 55.0% | |
| CAGTTACCGCAGGGATTCTG+TGG | + | tig0028819:2104-2123 | Msa1439530:intron | 55.0% | |
| AGCGCGTGAAGAAACCCGAT+TGG | - | tig0028819:2686-2705 | None:intergenic | 55.0% | |
| CCTTGCACAGCCCCAACAGT+TGG | - | tig0028819:1810-1829 | None:intergenic | 60.0% | |
| CCAACTGTTGGGGCTGTGCA+AGG | + | tig0028819:1807-1826 | Msa1439530:CDS | 60.0% | |
| !! | GTGGGTGGCATCGGTCTCAC+CGG | + | tig0028819:1749-1768 | Msa1439530:CDS | 65.0% |
| !! | TGGGTGGCATCGGTCTCACC+GGG | + | tig0028819:1750-1769 | Msa1439530:CDS | 65.0% |
| CTGCTGCAACGGGAACCGCA+AGG | + | tig0028819:2864-2883 | Msa1439530:three_prime_UTR | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0028819 | gene | 850 | 3484 | 850 | ID=Msa1439530;Name=Msa1439530 |
| tig0028819 | mRNA | 850 | 3484 | 850 | ID=Msa1439530-mRNA-1;Parent=Msa1439530;Name=Msa1439530-mRNA-1;_AED=0.38;_eAED=0.38;_QI=0|1|0.75|1|0.33|0.5|4|714|247 |
| tig0028819 | exon | 850 | 1101 | 850 | ID=Msa1439530-mRNA-1:exon:11824;Parent=Msa1439530-mRNA-1 |
| tig0028819 | exon | 1655 | 2019 | 1655 | ID=Msa1439530-mRNA-1:exon:11825;Parent=Msa1439530-mRNA-1 |
| tig0028819 | exon | 2116 | 2256 | 2116 | ID=Msa1439530-mRNA-1:exon:11826;Parent=Msa1439530-mRNA-1 |
| tig0028819 | exon | 2785 | 3484 | 2785 | ID=Msa1439530-mRNA-1:exon:11827;Parent=Msa1439530-mRNA-1 |
| tig0028819 | CDS | 850 | 1101 | 850 | ID=Msa1439530-mRNA-1:cds;Parent=Msa1439530-mRNA-1 |
| tig0028819 | CDS | 1655 | 2019 | 1655 | ID=Msa1439530-mRNA-1:cds;Parent=Msa1439530-mRNA-1 |
| tig0028819 | CDS | 2116 | 2242 | 2116 | ID=Msa1439530-mRNA-1:cds;Parent=Msa1439530-mRNA-1 |
| tig0028819 | three_prime_UTR | 2243 | 2256 | 2243 | ID=Msa1439530-mRNA-1:three_prime_utr;Parent=Msa1439530-mRNA-1 |
| tig0028819 | three_prime_UTR | 2785 | 3484 | 2785 | ID=Msa1439530-mRNA-1:three_prime_utr;Parent=Msa1439530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
