Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1432400 | XP_003600608.2 | 94.313 | 211 | 10 | 1 | 1 | 209 | 891 | 1101 | 3.65e-131 | 407 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1432400 | G7J7W5 | 94.313 | 211 | 10 | 1 | 1 | 209 | 891 | 1101 | 1.74e-131 | 407 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012040 | Msa1432400 | 0.821553 | 3.798710e-53 | -8.615850e-47 |
| Msa0013050 | Msa1432400 | -0.878541 | 2.583832e-69 | -8.615850e-47 |
| Msa0030380 | Msa1432400 | 0.804113 | 2.524522e-49 | -8.615850e-47 |
| Msa0032610 | Msa1432400 | 0.809297 | 2.028611e-50 | -8.615850e-47 |
| Msa0044710 | Msa1432400 | 0.855132 | 7.745794e-62 | -8.615850e-47 |
| Msa0050720 | Msa1432400 | 0.810242 | 1.270858e-50 | -8.615850e-47 |
| Msa0052640 | Msa1432400 | 0.803585 | 3.250000e-49 | -8.615850e-47 |
| Msa0052770 | Msa1432400 | 0.815782 | 7.749455e-52 | -8.615850e-47 |
| Msa0067150 | Msa1432400 | 0.808433 | 3.105298e-50 | -8.615850e-47 |
| Msa0071240 | Msa1432400 | 0.823140 | 1.625469e-53 | -8.615850e-47 |
| Msa0091570 | Msa1432400 | 0.800788 | 1.222763e-48 | -8.615850e-47 |
| Msa0106370 | Msa1432400 | -0.802401 | 5.708510e-49 | -8.615850e-47 |
| Msa0111310 | Msa1432400 | 0.830552 | 2.754829e-55 | -8.615850e-47 |
| Msa0119850 | Msa1432400 | 0.846131 | 2.633576e-59 | -8.615850e-47 |
| Msa1358610 | Msa1432400 | -0.805408 | 1.354381e-49 | -8.615850e-47 |
| Msa1359630 | Msa1432400 | 0.810529 | 1.101745e-50 | -8.615850e-47 |
| Msa1365700 | Msa1432400 | -0.808905 | 2.460771e-50 | -8.615850e-47 |
| Msa1388790 | Msa1432400 | -0.841294 | 5.183596e-58 | -8.615850e-47 |
| Msa1391490 | Msa1432400 | 0.842727 | 2.166949e-58 | -8.615850e-47 |
| Msa1398800 | Msa1432400 | 0.839174 | 1.855819e-57 | -8.615850e-47 |
| Msa1403580 | Msa1432400 | -0.808883 | 2.488426e-50 | -8.615850e-47 |
| Msa1410430 | Msa1432400 | -0.800670 | 1.292375e-48 | -8.615850e-47 |
| Msa1419800 | Msa1432400 | -0.839357 | 1.663509e-57 | -8.615850e-47 |
| Msa1425010 | Msa1432400 | 0.806196 | 9.250066e-50 | -8.615850e-47 |
| Msa1427830 | Msa1432400 | 0.820845 | 5.530786e-53 | -8.615850e-47 |
| Msa1432400 | Msa1439530 | 0.954274 | 4.278398e-112 | -8.615850e-47 |
| Msa1432400 | Msa1440000 | 0.832665 | 8.305189e-56 | -8.615850e-47 |
| Msa1432400 | Msa1440610 | 0.809557 | 1.784487e-50 | -8.615850e-47 |
| Msa1432400 | Msa1449250 | -0.819809 | 9.556638e-53 | -8.615850e-47 |
| Msa1432400 | Msa1451550 | 0.803493 | 3.395197e-49 | -8.615850e-47 |
| Msa1432400 | Msa1452470 | 0.811372 | 7.235711e-51 | -8.615850e-47 |
| Msa1432400 | Msa1453620 | 0.818380 | 2.020688e-52 | -8.615850e-47 |
| Msa1432400 | Msa1453780 | -0.857943 | 1.156123e-62 | -8.615850e-47 |
| Msa1432400 | Msa1454110 | 0.817711 | 2.861431e-52 | -8.615850e-47 |
| Msa1432400 | Msa1460470 | 0.813166 | 2.937331e-51 | -8.615850e-47 |
| Msa1432400 | Msa1465960 | 0.854871 | 9.220295e-62 | -8.615850e-47 |
| Msa0605170 | Msa1432400 | 0.827088 | 1.898036e-54 | -8.615850e-47 |
| Msa0607340 | Msa1432400 | -0.867656 | 1.165466e-65 | -8.615850e-47 |
| Msa0610430 | Msa1432400 | 0.802142 | 6.456350e-49 | -8.615850e-47 |
| Msa0618010 | Msa1432400 | 0.841413 | 4.824624e-58 | -8.615850e-47 |
| Msa0621490 | Msa1432400 | 0.807886 | 4.059154e-50 | -8.615850e-47 |
| Msa0632870 | Msa1432400 | 0.820300 | 7.376987e-53 | -8.615850e-47 |
| Msa0638320 | Msa1432400 | 0.809863 | 1.533433e-50 | -8.615850e-47 |
| Msa0646640 | Msa1432400 | 0.834704 | 2.569716e-56 | -8.615850e-47 |
| Msa0647450 | Msa1432400 | -0.835822 | 1.341576e-56 | -8.615850e-47 |
| Msa0661190 | Msa1432400 | -0.824566 | 7.529754e-54 | -8.615850e-47 |
| Msa0669850 | Msa1432400 | 0.800857 | 1.183898e-48 | -8.615850e-47 |
| Msa0671740 | Msa1432400 | 0.824809 | 6.599349e-54 | -8.615850e-47 |
| Msa0672120 | Msa1432400 | 0.832663 | 8.311160e-56 | -8.615850e-47 |
| Msa0677270 | Msa1432400 | 0.808290 | 3.330806e-50 | -8.615850e-47 |
| Msa0705420 | Msa1432400 | 0.849351 | 3.420079e-60 | -8.615850e-47 |
| Msa0734660 | Msa1432400 | 0.815330 | 9.771819e-52 | -8.615850e-47 |
| Msa0743260 | Msa1432400 | 0.819983 | 8.717728e-53 | -8.615850e-47 |
| Msa0756310 | Msa1432400 | 0.807651 | 4.553982e-50 | -8.615850e-47 |
| Msa0771720 | Msa1432400 | 0.811357 | 7.291506e-51 | -8.615850e-47 |
| Msa0776220 | Msa1432400 | 0.801910 | 7.204076e-49 | -8.615850e-47 |
| Msa0784860 | Msa1432400 | 0.810658 | 1.033322e-50 | -8.615850e-47 |
| Msa0789270 | Msa1432400 | 0.803481 | 3.414925e-49 | -8.615850e-47 |
| Msa0789280 | Msa1432400 | 0.804878 | 1.748743e-49 | -8.615850e-47 |
| Msa0789290 | Msa1432400 | 0.801860 | 7.375849e-49 | -8.615850e-47 |
| Msa0790390 | Msa1432400 | -0.805378 | 1.373880e-49 | -8.615850e-47 |
| Msa0792090 | Msa1432400 | 0.806134 | 9.533327e-50 | -8.615850e-47 |
| Msa0795920 | Msa1432400 | 0.820334 | 7.247594e-53 | -8.615850e-47 |
| Msa0804120 | Msa1432400 | 0.824343 | 8.499077e-54 | -8.615850e-47 |
| Msa0813670 | Msa1432400 | 0.806746 | 7.080806e-50 | -8.615850e-47 |
| Msa0813720 | Msa1432400 | 0.829285 | 5.606086e-55 | -8.615850e-47 |
| Msa0824680 | Msa1432400 | 0.812257 | 4.643289e-51 | -8.615850e-47 |
| Msa0831870 | Msa1432400 | 0.813186 | 2.907926e-51 | -8.615850e-47 |
| Msa0835730 | Msa1432400 | 0.809149 | 2.182002e-50 | -8.615850e-47 |
| Msa0842210 | Msa1432400 | 0.841552 | 4.434159e-58 | -8.615850e-47 |
| Msa0136390 | Msa1432400 | 0.831212 | 1.897714e-55 | -8.615850e-47 |
| Msa0142420 | Msa1432400 | 0.839707 | 1.348646e-57 | -8.615850e-47 |
| Msa0148120 | Msa1432400 | 0.805117 | 1.558348e-49 | -8.615850e-47 |
| Msa0154770 | Msa1432400 | 0.800966 | 1.124398e-48 | -8.615850e-47 |
| Msa0156650 | Msa1432400 | -0.804949 | 1.690092e-49 | -8.615850e-47 |
| Msa0162770 | Msa1432400 | -0.826105 | 3.255740e-54 | -8.615850e-47 |
| Msa0173740 | Msa1432400 | 0.807935 | 3.962853e-50 | -8.615850e-47 |
| Msa0178990 | Msa1432400 | 0.826202 | 3.087212e-54 | -8.615850e-47 |
| Msa0182930 | Msa1432400 | 0.825888 | 3.666004e-54 | -8.615850e-47 |
| Msa0183640 | Msa1432400 | -0.806414 | 8.320792e-50 | -8.615850e-47 |
| Msa0188630 | Msa1432400 | 0.805828 | 1.105414e-49 | -8.615850e-47 |
| Msa0197940 | Msa1432400 | -0.840859 | 6.747022e-58 | -8.615850e-47 |
| Msa0229490 | Msa1432400 | -0.829034 | 6.452439e-55 | -8.615850e-47 |
| Msa0233350 | Msa1432400 | 0.802619 | 5.147255e-49 | -8.615850e-47 |
| Msa0236270 | Msa1432400 | 0.806598 | 7.609308e-50 | -8.615850e-47 |
| Msa0238250 | Msa1432400 | -0.823857 | 1.104935e-53 | -8.615850e-47 |
| Msa1225150 | Msa1432400 | -0.809725 | 1.641475e-50 | -8.615850e-47 |
| Msa1236640 | Msa1432400 | -0.834013 | 3.831416e-56 | -8.615850e-47 |
| Msa1260130 | Msa1432400 | 0.876772 | 1.070312e-68 | -8.615850e-47 |
| Msa1267260 | Msa1432400 | 0.841315 | 5.120657e-58 | -8.615850e-47 |
| Msa1282920 | Msa1432400 | 0.841573 | 4.376797e-58 | -8.615850e-47 |
| Msa1293510 | Msa1432400 | 0.800864 | 1.180092e-48 | -8.615850e-47 |
| Msa1296880 | Msa1432400 | 0.855317 | 6.843446e-62 | -8.615850e-47 |
| Msa1300050 | Msa1432400 | 0.841913 | 3.561610e-58 | -8.615850e-47 |
| Msa1302100 | Msa1432400 | 0.818767 | 1.650389e-52 | -8.615850e-47 |
| Msa1302190 | Msa1432400 | -0.842940 | 1.902306e-58 | -8.615850e-47 |
| Msa1304820 | Msa1432400 | 0.805599 | 1.235075e-49 | -8.615850e-47 |
| Msa1306430 | Msa1432400 | 0.859279 | 4.616860e-63 | -8.615850e-47 |
| Msa1322190 | Msa1432400 | 0.818656 | 1.749533e-52 | -8.615850e-47 |
| Msa1328700 | Msa1432400 | 0.818626 | 1.776810e-52 | -8.615850e-47 |
| Msa1336950 | Msa1432400 | 0.819551 | 1.094601e-52 | -8.615850e-47 |
| Msa1342640 | Msa1432400 | -0.806064 | 9.862028e-50 | -8.615850e-47 |
| Msa0369220 | Msa1432400 | 0.802729 | 4.885972e-49 | -8.615850e-47 |
| Msa0378080 | Msa1432400 | 0.800495 | 1.403157e-48 | -8.615850e-47 |
| Msa0379410 | Msa1432400 | 0.837497 | 5.018808e-57 | -8.615850e-47 |
| Msa0380040 | Msa1432400 | 0.841183 | 5.545795e-58 | -8.615850e-47 |
| Msa0388050 | Msa1432400 | 0.808638 | 2.807504e-50 | -8.615850e-47 |
| Msa0394340 | Msa1432400 | 0.800677 | 1.288555e-48 | -8.615850e-47 |
| Msa0398950 | Msa1432400 | 0.810169 | 1.317173e-50 | -8.615850e-47 |
| Msa0421780 | Msa1432400 | -0.816131 | 6.476476e-52 | -8.615850e-47 |
| Msa0429290 | Msa1432400 | 0.839140 | 1.892751e-57 | -8.615850e-47 |
| Msa0442200 | Msa1432400 | 0.831130 | 1.987036e-55 | -8.615850e-47 |
| Msa0462590 | Msa1432400 | 0.807182 | 5.727472e-50 | -8.615850e-47 |
| Msa0465790 | Msa1432400 | 0.830532 | 2.785487e-55 | -8.615850e-47 |
| Msa0467900 | Msa1432400 | -0.805980 | 1.027065e-49 | -8.615850e-47 |
| Msa0467960 | Msa1432400 | -0.810181 | 1.309627e-50 | -8.615850e-47 |
| Msa0472740 | Msa1432400 | 0.825795 | 3.857452e-54 | -8.615850e-47 |
| Msa0475240 | Msa1432400 | 0.828010 | 1.140353e-54 | -8.615850e-47 |
| Msa0475580 | Msa1432400 | 0.839111 | 1.926503e-57 | -8.615850e-47 |
| Msa0992490 | Msa1432400 | -0.812380 | 4.364315e-51 | -8.615850e-47 |
| Msa1000690 | Msa1432400 | 0.806087 | 9.752477e-50 | -8.615850e-47 |
| Msa1012830 | Msa1432400 | 0.823129 | 1.635352e-53 | -8.615850e-47 |
| Msa1047400 | Msa1432400 | 0.824105 | 9.666100e-54 | -8.615850e-47 |
| Msa1072460 | Msa1432400 | -0.852919 | 3.364083e-61 | -8.615850e-47 |
| Msa1082820 | Msa1432400 | -0.806242 | 9.045251e-50 | -8.615850e-47 |
| Msa0240780 | Msa1432400 | 0.804775 | 1.836847e-49 | -8.615850e-47 |
| Msa0244270 | Msa1432400 | 0.848828 | 4.780024e-60 | -8.615850e-47 |
| Msa0260950 | Msa1432400 | -0.817917 | 2.571166e-52 | -8.615850e-47 |
| Msa0267310 | Msa1432400 | 0.812126 | 4.959018e-51 | -8.615850e-47 |
| Msa0270270 | Msa1432400 | 0.800160 | 1.641949e-48 | -8.615850e-47 |
| Msa0288240 | Msa1432400 | 0.848019 | 8.000462e-60 | -8.615850e-47 |
| Msa0288330 | Msa1432400 | 0.823811 | 1.132710e-53 | -8.615850e-47 |
| Msa0298700 | Msa1432400 | 0.807155 | 5.803540e-50 | -8.615850e-47 |
| Msa0318250 | Msa1432400 | 0.823726 | 1.186046e-53 | -8.615850e-47 |
| Msa0318270 | Msa1432400 | 0.804546 | 2.051148e-49 | -8.615850e-47 |
| Msa0326670 | Msa1432400 | 0.838763 | 2.370335e-57 | -8.615850e-47 |
| Msa0336420 | Msa1432400 | 0.800559 | 1.361905e-48 | -8.615850e-47 |
| Msa0352330 | Msa1432400 | 0.800518 | 1.387889e-48 | -8.615850e-47 |
| Msa0358170 | Msa1432400 | 0.833209 | 6.081285e-56 | -8.615850e-47 |
| Msa1111630 | Msa1432400 | 0.801641 | 8.179933e-49 | -8.615850e-47 |
| Msa1143840 | Msa1432400 | 0.801507 | 8.717530e-49 | -8.615850e-47 |
| Msa1143930 | Msa1432400 | -0.839691 | 1.362152e-57 | -8.615850e-47 |
| Msa1171870 | Msa1432400 | 0.852987 | 3.217793e-61 | -8.615850e-47 |
| Msa1173140 | Msa1432400 | 0.814499 | 1.493491e-51 | -8.615850e-47 |
| Msa1187520 | Msa1432400 | 0.855967 | 4.421486e-62 | -8.615850e-47 |
| Msa1199560 | Msa1432400 | 0.827522 | 1.493700e-54 | -8.615850e-47 |
| Msa1205010 | Msa1432400 | -0.802751 | 4.835020e-49 | -8.615850e-47 |
| Msa1212760 | Msa1432400 | 0.831385 | 1.720334e-55 | -8.615850e-47 |
| Msa1217430 | Msa1432400 | -0.824654 | 7.177966e-54 | -8.615850e-47 |
| Msa1217830 | Msa1432400 | 0.810621 | 1.052118e-50 | -8.615850e-47 |
| Msa0489610 | Msa1432400 | 0.806304 | 8.778288e-50 | -8.615850e-47 |
| Msa0509390 | Msa1432400 | 0.818367 | 2.034394e-52 | -8.615850e-47 |
| Msa0510350 | Msa1432400 | 0.809065 | 2.274802e-50 | -8.615850e-47 |
| Msa0511720 | Msa1432400 | -0.801492 | 8.777509e-49 | -8.615850e-47 |
| Msa0518040 | Msa1432400 | 0.800177 | 1.628916e-48 | -8.615850e-47 |
| Msa0519220 | Msa1432400 | 0.843624 | 1.249954e-58 | -8.615850e-47 |
| Msa0536650 | Msa1432400 | 0.815849 | 7.487718e-52 | -8.615850e-47 |
| Msa0540070 | Msa1432400 | 0.826741 | 2.296930e-54 | -8.615850e-47 |
| Msa0553220 | Msa1432400 | -0.862384 | 5.264323e-64 | -8.615850e-47 |
| Msa0562300 | Msa1432400 | -0.808538 | 2.948431e-50 | -8.615850e-47 |
| Msa0571700 | Msa1432400 | 0.800324 | 1.520662e-48 | -8.615850e-47 |
| Msa0580420 | Msa1432400 | 0.816826 | 4.525470e-52 | -8.615850e-47 |
| Msa0585000 | Msa1432400 | -0.804449 | 2.148981e-49 | -8.615850e-47 |
| Msa0591770 | Msa1432400 | 0.806765 | 7.018554e-50 | -8.615850e-47 |
| Msa0842830 | Msa1432400 | 0.815175 | 1.057613e-51 | -8.615850e-47 |
| Msa0863770 | Msa1432400 | 0.801112 | 1.049789e-48 | -8.615850e-47 |
| Msa0867050 | Msa1432400 | -0.800789 | 1.222401e-48 | -8.615850e-47 |
| Msa0870150 | Msa1432400 | 0.847305 | 1.258221e-59 | -8.615850e-47 |
| Msa0926460 | Msa1432400 | 0.824780 | 6.706488e-54 | -8.615850e-47 |
| Msa0950320 | Msa1432400 | 0.806863 | 6.690346e-50 | -8.615850e-47 |
| Msa0965860 | Msa1432400 | 0.817699 | 2.879510e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1432400 | MtrunA17_Chr3g0109551 | 94.313 | 211 | 10 | 1 | 1 | 209 | 891 | 1101 | 3.35e-135 | 407 |
| Msa1432400 | MtrunA17_Chr8g0375181 | 37.811 | 201 | 121 | 3 | 5 | 204 | 911 | 1108 | 1.87e-32 | 125 |
| Msa1432400 | MtrunA17_Chr8g0375191 | 35.533 | 197 | 123 | 3 | 5 | 200 | 834 | 1027 | 1.56e-29 | 117 |
| Msa1432400 | MtrunA17_Chr5g0435821 | 34.848 | 198 | 123 | 5 | 5 | 200 | 72 | 265 | 6.27e-26 | 105 |
| Msa1432400 | MtrunA17_Chr8g0375151 | 35.385 | 195 | 110 | 4 | 7 | 200 | 805 | 984 | 2.03e-25 | 105 |
| Msa1432400 | MtrunA17_Chr3g0094211 | 30.682 | 176 | 117 | 3 | 1 | 174 | 823 | 995 | 1.25e-22 | 96.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1432400 | AT1G65780.1 | 36.765 | 204 | 110 | 4 | 1 | 202 | 819 | 1005 | 6.72e-36 | 135 |
| Msa1432400 | AT1G65810.1 | 34.536 | 194 | 119 | 3 | 2 | 193 | 805 | 992 | 7.41e-28 | 112 |
| Msa1432400 | AT1G65810.3 | 34.536 | 194 | 119 | 3 | 2 | 193 | 805 | 992 | 8.27e-28 | 112 |
| Msa1432400 | AT1G65810.2 | 28.125 | 192 | 100 | 3 | 2 | 193 | 805 | 958 | 2.61e-13 | 69.7 |
Find 94 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCATTGGTTCTATATAAAT+TGG | 0.180071 | tig0027096:+3373 | Msa1432400:three_prime_UTR |
| ATGATCAACAGTATAGATTT+TGG | 0.196305 | tig0027096:-3004 | None:intergenic |
| TTGGACCGCCAGCAGTTTAA+AGG | 0.232481 | tig0027096:+3058 | Msa1432400:three_prime_UTR |
| AAACTCCAGGAAATTCTTCT+AGG | 0.257667 | tig0027096:-3107 | None:intergenic |
| ACGAGTTACTTTATATTGTA+TGG | 0.301395 | tig0027096:+1792 | Msa1432400:CDS |
| GCAAAATCAGGTGTTCTAAT+AGG | 0.316891 | tig0027096:+1957 | Msa1432400:CDS |
| TGATGAATAGTGGCTCCATT+TGG | 0.337044 | tig0027096:+878 | Msa1432400:exon |
| AAGTGAAGGATACACTTTAC+AGG | 0.347382 | tig0027096:+2914 | Msa1432400:three_prime_UTR |
| AGGTATTGCCTCTGGATAAT+AGG | 0.349854 | tig0027096:+841 | None:intergenic |
| TGCTATTTAGAAAAGCAAAA+TGG | 0.358339 | tig0027096:+1034 | Msa1432400:CDS |
| TCTCACCGGGAGATAAATAT+TGG | 0.372846 | tig0027096:+1722 | Msa1432400:CDS |
| AAAACTCTGCACTTATCTCT+TGG | 0.383353 | tig0027096:+3039 | Msa1432400:three_prime_UTR |
| CAGTTTAAAGGAGCCAATAC+TGG | 0.391632 | tig0027096:+3070 | Msa1432400:three_prime_UTR |
| GATAATTCTTCCCAACTGTT+GGG | 0.395250 | tig0027096:+1755 | Msa1432400:CDS |
| TATACCAGACAGCTTTGGTT+TGG | 0.397659 | tig0027096:+2764 | Msa1432400:CDS |
| ATCTTGGATACCTCAGATAA+TGG | 0.405986 | tig0027096:-1878 | None:intergenic |
| TTCGTAGATGCTGCAAAATC+AGG | 0.409343 | tig0027096:+1945 | Msa1432400:CDS |
| ATCTTGTGGCAGATTATGAT+TGG | 0.412299 | tig0027096:-2122 | None:intergenic |
| GTTAATATCCCTCACCATCT+TGG | 0.413205 | tig0027096:-1894 | None:intergenic |
| GATGAATAGTGGCTCCATTT+GGG | 0.414157 | tig0027096:+879 | Msa1432400:exon |
| TGCTGTCACTTGTTGACAGT+TGG | 0.423364 | tig0027096:+3193 | Msa1432400:three_prime_UTR |
| GGTTCAATTAAGATTCCATC+TGG | 0.428548 | tig0027096:+3408 | Msa1432400:three_prime_UTR |
| TGAAAGGCATCTGCTGCAAC+GGG | 0.428713 | tig0027096:+2812 | Msa1432400:CDS |
| ATGTACCTAGAAGAATTTCC+TGG | 0.443729 | tig0027096:+3102 | Msa1432400:three_prime_UTR |
| GTAAGTTTGTAACATTGCTT+AGG | 0.447341 | tig0027096:+2870 | Msa1432400:exon |
| CACTTGAAAGTTGCATCAGC+AGG | 0.449001 | tig0027096:-1688 | None:intergenic |
| GTTTATGTAGGTATTGCCTC+TGG | 0.451761 | tig0027096:+833 | None:intergenic |
| TGATAATTCTTCCCAACTGT+TGG | 0.453460 | tig0027096:+1754 | Msa1432400:CDS |
| AGTCATGGAAAATATGTGAT+TGG | 0.458710 | tig0027096:-3143 | None:intergenic |
| GGAAAATATGTGATTGGCTC+AGG | 0.459589 | tig0027096:-3137 | None:intergenic |
| CACTTTACAGGGTAAAATGC+GGG | 0.462226 | tig0027096:+2926 | Msa1432400:three_prime_UTR |
| GTGGGTGGCATCGGTCTCAC+CGG | 0.464293 | tig0027096:+1708 | Msa1432400:CDS |
| CTCAGGATATTTCAAACTCC+AGG | 0.473682 | tig0027096:-3120 | None:intergenic |
| TATTGGCTCCTTTAAACTGC+TGG | 0.474895 | tig0027096:-3066 | None:intergenic |
| AACTTTCAAGTGGGTGGCAT+CGG | 0.480977 | tig0027096:+1699 | Msa1432400:CDS |
| CCAACTGTTGGGGCTGTGCA+AGG | 0.486755 | tig0027096:+1766 | Msa1432400:CDS |
| GTTTGAATATTCAAATTAGC+CGG | 0.487382 | tig0027096:-2100 | None:intergenic |
| ACACGTGGTTTGTGAATACT+AGG | 0.489120 | tig0027096:-3268 | None:intergenic |
| GATCATATACCAGACAGCTT+TGG | 0.493186 | tig0027096:+2759 | Msa1432400:CDS |
| ACATTTCTGTCATCCAGTAT+TGG | 0.494026 | tig0027096:-3083 | None:intergenic |
| AAATTAGCCGGCCATCTCAA+TGG | 0.496953 | tig0027096:-2088 | None:intergenic |
| TGGTCACATATTAACTGCAT+TGG | 0.500002 | tig0027096:-2148 | None:intergenic |
| TTGAAAGGCATCTGCTGCAA+CGG | 0.501244 | tig0027096:+2811 | Msa1432400:CDS |
| ATAGAGTAATACCTCCCAAA+TGG | 0.512547 | tig0027096:-893 | None:intergenic |
| CTGCTGATGCAACTTTCAAG+TGG | 0.526338 | tig0027096:+1689 | Msa1432400:CDS |
| CCTTGCACAGCCCCAACAGT+TGG | 0.528221 | tig0027096:-1766 | None:intergenic |
| CTTGCACAGCCCCAACAGTT+GGG | 0.530461 | tig0027096:-1765 | None:intergenic |
| GGTGAAACTTTGATGAATAG+TGG | 0.531384 | tig0027096:+868 | Msa1432400:exon |
| CTCTATGATGCGGTAGCTCG+AGG | 0.534860 | tig0027096:+910 | Msa1432400:CDS |
| GACTTGACCAAGCTCAATCA+TGG | 0.535026 | tig0027096:-986 | None:intergenic |
| AGAGAACGGCGATACTATAG+AGG | 0.539364 | tig0027096:-3171 | None:intergenic |
| TGTGGTTCCATTGAGATGGC+CGG | 0.540790 | tig0027096:+2081 | Msa1432400:CDS |
| ATTCTGTGGTTCCATTGAGA+TGG | 0.547640 | tig0027096:+2077 | Msa1432400:CDS |
| TGCTGATGCAACTTTCAAGT+GGG | 0.548305 | tig0027096:+1690 | Msa1432400:CDS |
| ATAATTCTTCCCAACTGTTG+GGG | 0.549103 | tig0027096:+1756 | Msa1432400:CDS |
| AACTGCATTGGATCATCTTG+TGG | 0.551955 | tig0027096:-2136 | None:intergenic |
| TGCCTCTGGATAATAGGTAA+TGG | 0.555421 | tig0027096:+847 | Msa1432400:five_prime_UTR |
| CAACTCCAATATTTATCTCC+CGG | 0.555829 | tig0027096:-1727 | None:intergenic |
| TTGTAACATTGCTTAGGACG+AGG | 0.558423 | tig0027096:+2876 | Msa1432400:exon |
| CAGTTACCGCAGGGATTCTG+TGG | 0.568813 | tig0027096:+2063 | Msa1432400:intron |
| ACATATTCTCTTGCAATCCT+CGG | 0.570159 | tig0027096:-1663 | None:intergenic |
| GCAACTGCCATGATTGAGCT+TGG | 0.570385 | tig0027096:+979 | Msa1432400:CDS |
| ACTATAGAGGATCCAAGTCA+TGG | 0.575794 | tig0027096:-3158 | None:intergenic |
| ATGGACCATTGACATTCTTG+AGG | 0.582221 | tig0027096:+1811 | Msa1432400:CDS |
| CTGAGGTATCCAAGATGGTG+AGG | 0.582989 | tig0027096:+1885 | Msa1432400:CDS |
| GTTTGACTCCTCTGAAGTGA+AGG | 0.589484 | tig0027096:+2900 | Msa1432400:three_prime_UTR |
| TGGCTCCTTTAAACTGCTGG+CGG | 0.590251 | tig0027096:-3063 | None:intergenic |
| CACCATTACCTATTATCCAG+AGG | 0.591718 | tig0027096:-849 | None:intergenic |
| ATTATCTGAGGTATCCAAGA+TGG | 0.596070 | tig0027096:+1880 | Msa1432400:CDS |
| TGTAACATTGCTTAGGACGA+GGG | 0.596364 | tig0027096:+2877 | Msa1432400:exon |
| TGACAGTTGGATCAATTCAA+CGG | 0.596765 | tig0027096:+3206 | Msa1432400:three_prime_UTR |
| TATTCCTTGTCATATCCAGA+TGG | 0.601442 | tig0027096:-3423 | None:intergenic |
| AAGTGTATCCTTCACTTCAG+AGG | 0.601635 | tig0027096:-2908 | None:intergenic |
| TCTATGATGCGGTAGCTCGA+GGG | 0.604030 | tig0027096:+911 | Msa1432400:CDS |
| TGAGGTATCCAAGATGGTGA+GGG | 0.607781 | tig0027096:+1886 | Msa1432400:CDS |
| TGATGCAACTTTCAAGTGGG+TGG | 0.615894 | tig0027096:+1693 | Msa1432400:CDS |
| GATGGAATCTTAATTGAACC+AGG | 0.625643 | tig0027096:-3405 | None:intergenic |
| GGAGGTATTACTCTATGATG+CGG | 0.630883 | tig0027096:+900 | Msa1432400:CDS |
| AGTGAAGGATACACTTTACA+GGG | 0.631647 | tig0027096:+2915 | Msa1432400:three_prime_UTR |
| ACAATAAACTGATCAAGACT+AGG | 0.634406 | tig0027096:-2849 | None:intergenic |
| CAACAAGTGACAGCAGAGAA+CGG | 0.634620 | tig0027096:-3185 | None:intergenic |
| ATTTAGAAAAGCAAAATGGA+AGG | 0.637265 | tig0027096:+1038 | Msa1432400:CDS |
| ACTTGAAAGTTGCATCAGCA+GGG | 0.642138 | tig0027096:-1687 | None:intergenic |
| GAATAGTGGCTCCATTTGGG+AGG | 0.654919 | tig0027096:+882 | Msa1432400:CDS |
| ACTTTACAGGGTAAAATGCG+GGG | 0.655925 | tig0027096:+2927 | Msa1432400:three_prime_UTR |
| GTAACATTGCTTAGGACGAG+GGG | 0.658026 | tig0027096:+2878 | Msa1432400:exon |
| CTAGACGAAATATACACACG+TGG | 0.664158 | tig0027096:-3283 | None:intergenic |
| ATGATTGAGCTTGGTCAAGT+CGG | 0.664581 | tig0027096:+988 | Msa1432400:CDS |
| CTGCTGCAACGGGAACCGCA+AGG | 0.666298 | tig0027096:+2822 | Msa1432400:CDS |
| GATTCCATCTGGATATGACA+AGG | 0.672484 | tig0027096:+3419 | Msa1432400:three_prime_UTR |
| ACACTTTACAGGGTAAAATG+CGG | 0.682346 | tig0027096:+2925 | Msa1432400:three_prime_UTR |
| ATAGTGCTGATGAGGATGAG+AGG | 0.695364 | tig0027096:+941 | Msa1432400:CDS |
| TCAAGACTAGGCAGACCTTG+CGG | 0.711545 | tig0027096:-2837 | None:intergenic |
| GGCAAGAATCAAGAGCACCG+AGG | 0.752236 | tig0027096:+1646 | Msa1432400:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATCTTATCATAATTAT+AGG | + | tig0027096:1592-1611 | Msa1432400:intron | 10.0% |
| !! | ATGTTTAAATTTGAATAAAT+TGG | + | tig0027096:2194-2213 | Msa1432400:intron | 10.0% |
| !!! | TTCTTTATTTTTTCAAAAAA+AGG | - | tig0027096:2273-2292 | None:intergenic | 10.0% |
| !! | AATATCATTTGATAAATTTG+TGG | - | tig0027096:1364-1383 | None:intergenic | 15.0% |
| !!! | AATATGCATATTATTTTTGT+AGG | + | tig0027096:2315-2334 | Msa1432400:intron | 15.0% |
| !!! | AAATAATCTAAAATAAGACA+TGG | - | tig0027096:2467-2486 | None:intergenic | 15.0% |
| !!! | CTTTCAAAACATAAAATTTT+AGG | - | tig0027096:2798-2817 | None:intergenic | 15.0% |
| !!! | CTAAAATTTTATGTTTTGAA+AGG | + | tig0027096:2796-2815 | Msa1432400:CDS | 15.0% |
| !! | CATGTCTTCAATAATAAATA+AGG | - | tig0027096:1096-1115 | None:intergenic | 20.0% |
| !! | CTTATTTATTATTGAAGACA+TGG | + | tig0027096:1094-1113 | Msa1432400:intron | 20.0% |
| !!! | TATTTTTTCAAAAAAAGGAG+AGG | - | tig0027096:2268-2287 | None:intergenic | 20.0% |
| !! | AAAGAGATATTAGAACATTA+TGG | + | tig0027096:2378-2397 | Msa1432400:intron | 20.0% |
| !!! | ATATTTCTAAATTCTGAAGT+AGG | + | tig0027096:2493-2512 | Msa1432400:intron | 20.0% |
| !! | ATTTACTATAAGTTTCAAGA+TGG | - | tig0027096:2574-2593 | None:intergenic | 20.0% |
| !! | ACTTATAGTAAATCAAGATT+AGG | + | tig0027096:2581-2600 | Msa1432400:intron | 20.0% |
| !! | CTTATAGTAAATCAAGATTA+GGG | + | tig0027096:2582-2601 | Msa1432400:intron | 20.0% |
| !! | TTATTTATGAACTTTCCAAT+CGG | + | tig0027096:2626-2645 | Msa1432400:intron | 20.0% |
| !!! | TTTTCCATTTTCAGAAATAT+TGG | + | tig0027096:2729-2748 | Msa1432400:intron | 20.0% |
| !!! | AAATCCAATATTTCTGAAAA+TGG | - | tig0027096:2736-2755 | None:intergenic | 20.0% |
| !!! | TTTTCAGAAATATTGGATTT+TGG | + | tig0027096:2736-2755 | Msa1432400:intron | 20.0% |
| !!! | TTTCAGAAATATTGGATTTT+GGG | + | tig0027096:2737-2756 | Msa1432400:intron | 20.0% |
| !! | TGCTATTTAGAAAAGCAAAA+TGG | + | tig0027096:1034-1053 | Msa1432400:CDS | 25.0% |
| ! | ATTTAGAAAAGCAAAATGGA+AGG | + | tig0027096:1038-1057 | Msa1432400:CDS | 25.0% |
| ! | AGTTTCTTTCCTAATTACAT+AGG | + | tig0027096:1131-1150 | Msa1432400:intron | 25.0% |
| ! | CTTCTATATGGGATAAATAA+TGG | - | tig0027096:1187-1206 | None:intergenic | 25.0% |
| ! | AGATTAGGAATCTTCTATAT+GGG | - | tig0027096:1198-1217 | None:intergenic | 25.0% |
| ! | AAGATTAGGAATCTTCTATA+TGG | - | tig0027096:1199-1218 | None:intergenic | 25.0% |
| ! | TTAAAATCCTCTTTCCTTAA+AGG | + | tig0027096:1429-1448 | Msa1432400:intron | 25.0% |
| !! | GCATTTGTTAATTGTGATAA+TGG | - | tig0027096:1494-1513 | None:intergenic | 25.0% |
| ! | TAAGCTGCTTAAAAAATCTA+GGG | - | tig0027096:1539-1558 | None:intergenic | 25.0% |
| ! | TTAAGCTGCTTAAAAAATCT+AGG | - | tig0027096:1540-1559 | None:intergenic | 25.0% |
| !! | ACGAGTTACTTTATATTGTA+TGG | + | tig0027096:1792-1811 | Msa1432400:CDS | 25.0% |
| ! | GTTTGAATATTCAAATTAGC+CGG | - | tig0027096:2103-2122 | None:intergenic | 25.0% |
| ! | TATTTATGAACTTTCCAATC+GGG | + | tig0027096:2627-2646 | Msa1432400:intron | 25.0% |
| !! | TCTTTTCTTTATTGACATTG+AGG | + | tig0027096:2689-2708 | Msa1432400:intron | 25.0% |
| !! | ATGATCAACAGTATAGATTT+TGG | - | tig0027096:3007-3026 | None:intergenic | 25.0% |
| !! | ATTTTCTGTATATACGCATA+AGG | + | tig0027096:3310-3329 | Msa1432400:three_prime_UTR | 25.0% |
| !! | TTTTCTGTATATACGCATAA+GGG | + | tig0027096:3311-3330 | Msa1432400:three_prime_UTR | 25.0% |
| !!! | AGTAAAACATTTGCCTTTTT+TGG | + | tig0027096:3347-3366 | Msa1432400:three_prime_UTR | 25.0% |
| !!! | GTAAAACATTTGCCTTTTTT+GGG | + | tig0027096:3348-3367 | Msa1432400:three_prime_UTR | 25.0% |
| !!! | TGCATTGGTTCTATATAAAT+TGG | + | tig0027096:3373-3392 | Msa1432400:three_prime_UTR | 25.0% |
| !! | ATAAATTGGATTTTCATTCC+TGG | + | tig0027096:3387-3406 | Msa1432400:three_prime_UTR | 25.0% |
| TAGGAATTGCCTATGTAATT+AGG | - | tig0027096:1143-1162 | None:intergenic | 30.0% | |
| CAAGGAAACATGTTAAGATT+AGG | - | tig0027096:1213-1232 | None:intergenic | 30.0% | |
| TAACAGGATACATTACAACA+AGG | - | tig0027096:1231-1250 | None:intergenic | 30.0% | |
| ATCATTTACATTGCGTTTGA+TGG | - | tig0027096:1254-1273 | None:intergenic | 30.0% | |
| TTGTGGTGTGAGAAAAATTT+GGG | - | tig0027096:1347-1366 | None:intergenic | 30.0% | |
| TTTGTGGTGTGAGAAAAATT+TGG | - | tig0027096:1348-1367 | None:intergenic | 30.0% | |
| ! | TCTCAATACCTTTTCCTTTA+AGG | - | tig0027096:1446-1465 | None:intergenic | 30.0% |
| !! | TTGTGATAATGGTTAAAGAG+TGG | - | tig0027096:1483-1502 | None:intergenic | 30.0% |
| ! | TCAAAGTTTTCTGATCTCTA+TGG | + | tig0027096:1625-1644 | Msa1432400:CDS | 30.0% |
| ! | ATTTTCCTCAAGAATGTCAA+TGG | - | tig0027096:1819-1838 | None:intergenic | 30.0% |
| !!! | ATGTTCAGATTTTGAAGCTT+TGG | + | tig0027096:1846-1865 | Msa1432400:intron | 30.0% |
| !!! | TGTTCAGATTTTGAAGCTTT+GGG | + | tig0027096:1847-1866 | Msa1432400:intron | 30.0% |
| TAATATAATCAGTTACCGCA+GGG | + | tig0027096:2054-2073 | Msa1432400:intron | 30.0% | |
| AAATTTAAACATCCCTCAGT+TGG | - | tig0027096:2186-2205 | None:intergenic | 30.0% | |
| ! | CAAGTTTTTCTTGCCTTTTT+TGG | + | tig0027096:2425-2444 | Msa1432400:intron | 30.0% |
| TGAAATTGCAGTTCCAAAAA+AGG | - | tig0027096:2441-2460 | None:intergenic | 30.0% | |
| !!! | TTTTTGGAACTGCAATTTCA+TGG | + | tig0027096:2441-2460 | Msa1432400:intron | 30.0% |
| TTTCTTTATTGACATTGAGG+TGG | + | tig0027096:2692-2711 | Msa1432400:intron | 30.0% | |
| ACAATAAACTGATCAAGACT+AGG | - | tig0027096:2852-2871 | None:intergenic | 30.0% | |
| GTAAGTTTGTAACATTGCTT+AGG | + | tig0027096:2870-2889 | Msa1432400:exon | 30.0% | |
| AGTCATGGAAAATATGTGAT+TGG | - | tig0027096:3146-3165 | None:intergenic | 30.0% | |
| ! | ATCACATATTTTCCATGACT+TGG | + | tig0027096:3146-3165 | Msa1432400:three_prime_UTR | 30.0% |
| ! | GATCAAAGCTGTATGTTTTT+AGG | + | tig0027096:3235-3254 | Msa1432400:three_prime_UTR | 30.0% |
| GGTGAAACTTTGATGAATAG+TGG | + | tig0027096:868-887 | Msa1432400:exon | 35.0% | |
| ATAGAGTAATACCTCCCAAA+TGG | - | tig0027096:896-915 | None:intergenic | 35.0% | |
| ATTCCTAGTTAGTCAATCAG+CGG | + | tig0027096:1156-1175 | Msa1432400:intron | 35.0% | |
| GATATTCATTACAGCTCAGT+AGG | + | tig0027096:1378-1397 | Msa1432400:intron | 35.0% | |
| TCCTCTTTCCTTAAAGGAAA+AGG | + | tig0027096:1435-1454 | Msa1432400:intron | 35.0% | |
| !! | ACCTTTTCCTTTAAGGAAAG+AGG | - | tig0027096:1439-1458 | None:intergenic | 35.0% |
| TCACAATTAACAAATGCAGC+AGG | + | tig0027096:1497-1516 | Msa1432400:intron | 35.0% | |
| ACATATTCTCTTGCAATCCT+CGG | - | tig0027096:1666-1685 | None:intergenic | 35.0% | |
| CAACTCCAATATTTATCTCC+CGG | - | tig0027096:1730-1749 | None:intergenic | 35.0% | |
| TGATAATTCTTCCCAACTGT+TGG | + | tig0027096:1754-1773 | Msa1432400:CDS | 35.0% | |
| GATAATTCTTCCCAACTGTT+GGG | + | tig0027096:1755-1774 | Msa1432400:CDS | 35.0% | |
| ATAATTCTTCCCAACTGTTG+GGG | + | tig0027096:1756-1775 | Msa1432400:CDS | 35.0% | |
| ATCTTGGATACCTCAGATAA+TGG | - | tig0027096:1881-1900 | None:intergenic | 35.0% | |
| ! | ATTATCTGAGGTATCCAAGA+TGG | + | tig0027096:1880-1899 | Msa1432400:CDS | 35.0% |
| ! | GGGATATTAACATCTTTTGC+AGG | + | tig0027096:1906-1925 | Msa1432400:CDS | 35.0% |
| GCAAAATCAGGTGTTCTAAT+AGG | + | tig0027096:1957-1976 | Msa1432400:CDS | 35.0% | |
| ! | AGCTTCACATTTTCAACAAG+TGG | + | tig0027096:2007-2026 | Msa1432400:intron | 35.0% |
| CTAATATAATCAGTTACCGC+AGG | + | tig0027096:2053-2072 | Msa1432400:intron | 35.0% | |
| ATCTTGTGGCAGATTATGAT+TGG | - | tig0027096:2125-2144 | None:intergenic | 35.0% | |
| TGGTCACATATTAACTGCAT+TGG | - | tig0027096:2151-2170 | None:intergenic | 35.0% | |
| GACATATAAGCTAGGAACAA+AGG | - | tig0027096:2552-2571 | None:intergenic | 35.0% | |
| TCAAGATGGACATATAAGCT+AGG | - | tig0027096:2560-2579 | None:intergenic | 35.0% | |
| AAGTGAAGGATACACTTTAC+AGG | + | tig0027096:2914-2933 | Msa1432400:three_prime_UTR | 35.0% | |
| AGTGAAGGATACACTTTACA+GGG | + | tig0027096:2915-2934 | Msa1432400:three_prime_UTR | 35.0% | |
| ACACTTTACAGGGTAAAATG+CGG | + | tig0027096:2925-2944 | Msa1432400:three_prime_UTR | 35.0% | |
| AAAACTCTGCACTTATCTCT+TGG | + | tig0027096:3039-3058 | Msa1432400:three_prime_UTR | 35.0% | |
| ACATTTCTGTCATCCAGTAT+TGG | - | tig0027096:3086-3105 | None:intergenic | 35.0% | |
| ATGTACCTAGAAGAATTTCC+TGG | + | tig0027096:3102-3121 | Msa1432400:three_prime_UTR | 35.0% | |
| AAACTCCAGGAAATTCTTCT+AGG | - | tig0027096:3110-3129 | None:intergenic | 35.0% | |
| TGACAGTTGGATCAATTCAA+CGG | + | tig0027096:3206-3225 | Msa1432400:three_prime_UTR | 35.0% | |
| AACCAATGCAAACCCAAAAA+AGG | - | tig0027096:3363-3382 | None:intergenic | 35.0% | |
| GATGGAATCTTAATTGAACC+AGG | - | tig0027096:3408-3427 | None:intergenic | 35.0% | |
| GGTTCAATTAAGATTCCATC+TGG | + | tig0027096:3408-3427 | Msa1432400:three_prime_UTR | 35.0% | |
| TGCCTCTGGATAATAGGTAA+TGG | + | tig0027096:847-866 | Msa1432400:five_prime_UTR | 40.0% | |
| CACCATTACCTATTATCCAG+AGG | - | tig0027096:852-871 | None:intergenic | 40.0% | |
| TGATGAATAGTGGCTCCATT+TGG | + | tig0027096:878-897 | Msa1432400:exon | 40.0% | |
| GATGAATAGTGGCTCCATTT+GGG | + | tig0027096:879-898 | Msa1432400:exon | 40.0% | |
| !! | GGAGGTATTACTCTATGATG+CGG | + | tig0027096:900-919 | Msa1432400:CDS | 40.0% |
| !!! | GTGTTTTCATAGTGCTGATG+AGG | + | tig0027096:933-952 | Msa1432400:CDS | 40.0% |
| ATGATTGAGCTTGGTCAAGT+CGG | + | tig0027096:988-1007 | Msa1432400:CDS | 40.0% | |
| ! | AATCCGCTGATTGACTAACT+AGG | - | tig0027096:1162-1181 | None:intergenic | 40.0% |
| ! | ACATTGCGTTTGATGGTAAC+AGG | - | tig0027096:1247-1266 | None:intergenic | 40.0% |
| ACTTGAAAGTTGCATCAGCA+GGG | - | tig0027096:1690-1709 | None:intergenic | 40.0% | |
| ! | TGCTGATGCAACTTTCAAGT+GGG | + | tig0027096:1690-1709 | Msa1432400:CDS | 40.0% |
| TCTCACCGGGAGATAAATAT+TGG | + | tig0027096:1722-1741 | Msa1432400:CDS | 40.0% | |
| ATGGACCATTGACATTCTTG+AGG | + | tig0027096:1811-1830 | Msa1432400:CDS | 40.0% | |
| ! | GGATGTTTTGCCATTATCTG+AGG | + | tig0027096:1868-1887 | Msa1432400:CDS | 40.0% |
| GTTAATATCCCTCACCATCT+TGG | - | tig0027096:1897-1916 | None:intergenic | 40.0% | |
| TTCGTAGATGCTGCAAAATC+AGG | + | tig0027096:1945-1964 | Msa1432400:CDS | 40.0% | |
| ATTCTGTGGTTCCATTGAGA+TGG | + | tig0027096:2077-2096 | Msa1432400:CDS | 40.0% | |
| AACTGCATTGGATCATCTTG+TGG | - | tig0027096:2139-2158 | None:intergenic | 40.0% | |
| TCAGTTGGAGCGAATCAAAT+TGG | - | tig0027096:2171-2190 | None:intergenic | 40.0% | |
| ! | AATTTGATTCGCTCCAACTG+AGG | + | tig0027096:2170-2189 | Msa1432400:intron | 40.0% |
| ! | ATTTGATTCGCTCCAACTGA+GGG | + | tig0027096:2171-2190 | Msa1432400:intron | 40.0% |
| ATTCAAGAGAGGTGAGAAGA+GGG | - | tig0027096:2227-2246 | None:intergenic | 40.0% | |
| AATTCAAGAGAGGTGAGAAG+AGG | - | tig0027096:2228-2247 | None:intergenic | 40.0% | |
| !! | AAAGGAGAGGTTTTGTAGCA+GGG | - | tig0027096:2255-2274 | None:intergenic | 40.0% |
| !! | AAAAGGAGAGGTTTTGTAGC+AGG | - | tig0027096:2256-2275 | None:intergenic | 40.0% |
| GATCATATACCAGACAGCTT+TGG | + | tig0027096:2759-2778 | Msa1432400:CDS | 40.0% | |
| ! | TATACCAGACAGCTTTGGTT+TGG | + | tig0027096:2764-2783 | Msa1432400:CDS | 40.0% |
| ! | TTTTCCAAACCAAAGCTGTC+TGG | - | tig0027096:2771-2790 | None:intergenic | 40.0% |
| TTGTAACATTGCTTAGGACG+AGG | + | tig0027096:2876-2895 | Msa1432400:exon | 40.0% | |
| TGTAACATTGCTTAGGACGA+GGG | + | tig0027096:2877-2896 | Msa1432400:exon | 40.0% | |
| AAGTGTATCCTTCACTTCAG+AGG | - | tig0027096:2911-2930 | None:intergenic | 40.0% | |
| CACTTTACAGGGTAAAATGC+GGG | + | tig0027096:2926-2945 | Msa1432400:three_prime_UTR | 40.0% | |
| ACTTTACAGGGTAAAATGCG+GGG | + | tig0027096:2927-2946 | Msa1432400:three_prime_UTR | 40.0% | |
| !! | TATTGGCTCCTTTAAACTGC+TGG | - | tig0027096:3069-3088 | None:intergenic | 40.0% |
| CAGTTTAAAGGAGCCAATAC+TGG | + | tig0027096:3070-3089 | Msa1432400:three_prime_UTR | 40.0% | |
| CTCAGGATATTTCAAACTCC+AGG | - | tig0027096:3123-3142 | None:intergenic | 40.0% | |
| ! | GGAAAATATGTGATTGGCTC+AGG | - | tig0027096:3140-3159 | None:intergenic | 40.0% |
| ACTATAGAGGATCCAAGTCA+TGG | - | tig0027096:3161-3180 | None:intergenic | 40.0% | |
| ! | ACACGTGGTTTGTGAATACT+AGG | - | tig0027096:3271-3290 | None:intergenic | 40.0% |
| CTAGACGAAATATACACACG+TGG | - | tig0027096:3286-3305 | None:intergenic | 40.0% | |
| !!! | TGCCTTTTTTGGGTTTGCAT+TGG | + | tig0027096:3358-3377 | Msa1432400:three_prime_UTR | 40.0% |
| !! | ATAGTGCTGATGAGGATGAG+AGG | + | tig0027096:941-960 | Msa1432400:CDS | 45.0% |
| GACTTGACCAAGCTCAATCA+TGG | - | tig0027096:989-1008 | None:intergenic | 45.0% | |
| ! | CTAAGCAAACTGACTGGTCA+GGG | - | tig0027096:1323-1342 | None:intergenic | 45.0% |
| ! | TCTAAGCAAACTGACTGGTC+AGG | - | tig0027096:1324-1343 | None:intergenic | 45.0% |
| TTGGGTCTAAGCAAACTGAC+TGG | - | tig0027096:1329-1348 | None:intergenic | 45.0% | |
| CACTTGAAAGTTGCATCAGC+AGG | - | tig0027096:1691-1710 | None:intergenic | 45.0% | |
| CTGCTGATGCAACTTTCAAG+TGG | + | tig0027096:1689-1708 | Msa1432400:CDS | 45.0% | |
| ! | TGATGCAACTTTCAAGTGGG+TGG | + | tig0027096:1693-1712 | Msa1432400:CDS | 45.0% |
| ! | AACTTTCAAGTGGGTGGCAT+CGG | + | tig0027096:1699-1718 | Msa1432400:CDS | 45.0% |
| ! | TGAGGTATCCAAGATGGTGA+GGG | + | tig0027096:1886-1905 | Msa1432400:CDS | 45.0% |
| AAATTAGCCGGCCATCTCAA+TGG | - | tig0027096:2091-2110 | None:intergenic | 45.0% | |
| GCAGGGACAAAATTCAAGAG+AGG | - | tig0027096:2238-2257 | None:intergenic | 45.0% | |
| !! | TTGAAAGGCATCTGCTGCAA+CGG | + | tig0027096:2811-2830 | Msa1432400:CDS | 45.0% |
| GTAACATTGCTTAGGACGAG+GGG | + | tig0027096:2878-2897 | Msa1432400:exon | 45.0% | |
| !! | GTTTGACTCCTCTGAAGTGA+AGG | + | tig0027096:2900-2919 | Msa1432400:three_prime_UTR | 45.0% |
| AGAGAACGGCGATACTATAG+AGG | - | tig0027096:3174-3193 | None:intergenic | 45.0% | |
| CAACAAGTGACAGCAGAGAA+CGG | - | tig0027096:3188-3207 | None:intergenic | 45.0% | |
| ! | TGCTGTCACTTGTTGACAGT+TGG | + | tig0027096:3193-3212 | Msa1432400:three_prime_UTR | 45.0% |
| GAATAGTGGCTCCATTTGGG+AGG | + | tig0027096:882-901 | Msa1432400:CDS | 50.0% | |
| TCTATGATGCGGTAGCTCGA+GGG | + | tig0027096:911-930 | Msa1432400:CDS | 50.0% | |
| GCAACTGCCATGATTGAGCT+TGG | + | tig0027096:979-998 | Msa1432400:CDS | 50.0% | |
| ! | CTGAGGTATCCAAGATGGTG+AGG | + | tig0027096:1885-1904 | Msa1432400:CDS | 50.0% |
| ATGGAACCACAGAATCCCTG+CGG | - | tig0027096:2072-2091 | None:intergenic | 50.0% | |
| TGTGGTTCCATTGAGATGGC+CGG | + | tig0027096:2081-2100 | Msa1432400:CDS | 50.0% | |
| !! | TGAAAGGCATCTGCTGCAAC+GGG | + | tig0027096:2812-2831 | Msa1432400:CDS | 50.0% |
| TCAAGACTAGGCAGACCTTG+CGG | - | tig0027096:2840-2859 | None:intergenic | 50.0% | |
| TTGGACCGCCAGCAGTTTAA+AGG | + | tig0027096:3058-3077 | Msa1432400:three_prime_UTR | 50.0% | |
| TGGCTCCTTTAAACTGCTGG+CGG | - | tig0027096:3066-3085 | None:intergenic | 50.0% | |
| CTCTATGATGCGGTAGCTCG+AGG | + | tig0027096:910-929 | Msa1432400:CDS | 55.0% | |
| !! | GGCAAGAATCAAGAGCACCG+AGG | + | tig0027096:1646-1665 | Msa1432400:CDS | 55.0% |
| CTTGCACAGCCCCAACAGTT+GGG | - | tig0027096:1768-1787 | None:intergenic | 55.0% | |
| CAGTTACCGCAGGGATTCTG+TGG | + | tig0027096:2063-2082 | Msa1432400:intron | 55.0% | |
| AGCGCGTGAAGAAACCCGAT+TGG | - | tig0027096:2644-2663 | None:intergenic | 55.0% | |
| CCTTGCACAGCCCCAACAGT+TGG | - | tig0027096:1769-1788 | None:intergenic | 60.0% | |
| CCAACTGTTGGGGCTGTGCA+AGG | + | tig0027096:1766-1785 | Msa1432400:CDS | 60.0% | |
| !! | GTGGGTGGCATCGGTCTCAC+CGG | + | tig0027096:1708-1727 | Msa1432400:CDS | 65.0% |
| !! | TGGGTGGCATCGGTCTCACC+GGG | + | tig0027096:1709-1728 | Msa1432400:CDS | 65.0% |
| CTGCTGCAACGGGAACCGCA+AGG | + | tig0027096:2822-2841 | Msa1432400:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0027096 | gene | 843 | 3441 | 843 | ID=Msa1432400;Name=Msa1432400 |
| tig0027096 | mRNA | 843 | 3441 | 843 | ID=Msa1432400-mRNA-1;Parent=Msa1432400;Name=Msa1432400-mRNA-1;_AED=0.37;_eAED=0.39;_QI=37|0.5|0.2|1|0.25|0.4|5|560|252 |
| tig0027096 | exon | 843 | 1059 | 843 | ID=Msa1432400-mRNA-1:exon:8085;Parent=Msa1432400-mRNA-1 |
| tig0027096 | exon | 1614 | 1847 | 1614 | ID=Msa1432400-mRNA-1:exon:8086;Parent=Msa1432400-mRNA-1 |
| tig0027096 | exon | 1854 | 1978 | 1854 | ID=Msa1432400-mRNA-1:exon:8087;Parent=Msa1432400-mRNA-1 |
| tig0027096 | exon | 2075 | 2155 | 2075 | ID=Msa1432400-mRNA-1:exon:8088;Parent=Msa1432400-mRNA-1 |
| tig0027096 | exon | 2743 | 3441 | 2743 | ID=Msa1432400-mRNA-1:exon:8089;Parent=Msa1432400-mRNA-1 |
| tig0027096 | five_prime_UTR | 843 | 879 | 843 | ID=Msa1432400-mRNA-1:five_prime_utr;Parent=Msa1432400-mRNA-1 |
| tig0027096 | CDS | 880 | 1059 | 880 | ID=Msa1432400-mRNA-1:cds;Parent=Msa1432400-mRNA-1 |
| tig0027096 | CDS | 1614 | 1847 | 1614 | ID=Msa1432400-mRNA-1:cds;Parent=Msa1432400-mRNA-1 |
| tig0027096 | CDS | 1854 | 1978 | 1854 | ID=Msa1432400-mRNA-1:cds;Parent=Msa1432400-mRNA-1 |
| tig0027096 | CDS | 2075 | 2155 | 2075 | ID=Msa1432400-mRNA-1:cds;Parent=Msa1432400-mRNA-1 |
| tig0027096 | CDS | 2743 | 2881 | 2743 | ID=Msa1432400-mRNA-1:cds;Parent=Msa1432400-mRNA-1 |
| tig0027096 | three_prime_UTR | 2882 | 3441 | 2882 | ID=Msa1432400-mRNA-1:three_prime_utr;Parent=Msa1432400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
