AlfalfaGEDB | Msa1452790

M. sativa cultivar zhongmu-4 / Msa1452790

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009611 GO:0009628 GO:0009642 GO:0009644 GO:0009765 GO:0009987 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031976 GO:0031984 GO:0034357 GO:0034644 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0051716 GO:0055035 GO:0070141 GO:0071214 GO:0071478 GO:0071482 GO:0071484 GO:0071486 GO:0071492 GO:0097159 GO:0104004 GO:1901363
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1452790	sp\|Q9SJ02\|STEP2_ARATH	55.670	194	81	3	39	229	1	192	2.12e-60	191

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1452790	A0A396GPG0	90.452	199	12	2	39	235	1	194	2.24e-124	360

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0034700	Msa1452790	0.828912	6.906753e-55	-8.615850e-47
Msa0044530	Msa1452790	0.822345	2.489880e-53	-8.615850e-47
Msa0044780	Msa1452790	0.830511	2.818267e-55	-8.615850e-47
Msa0045620	Msa1452790	-0.816250	6.092884e-52	-8.615850e-47
Msa0063190	Msa1452790	-0.823899	1.080251e-53	-8.615850e-47
Msa0091220	Msa1452790	0.826009	3.432472e-54	-8.615850e-47
Msa0091240	Msa1452790	0.824476	7.907993e-54	-8.615850e-47
Msa1349850	Msa1452790	0.810846	9.407014e-51	-8.615850e-47
Msa1371800	Msa1452790	-0.818746	1.668772e-52	-8.615850e-47
Msa1375000	Msa1452790	0.816197	6.259611e-52	-8.615850e-47
Msa1376310	Msa1452790	-0.823889	1.086442e-53	-8.615850e-47
Msa1427180	Msa1452790	0.811648	6.301882e-51	-8.615850e-47
Msa1436620	Msa1452790	-0.814893	1.221682e-51	-8.615850e-47
Msa0619320	Msa1452790	0.918116	2.315151e-86	-8.615850e-47
Msa0623310	Msa1452790	-0.809038	2.305534e-50	-8.615850e-47
Msa0661480	Msa1452790	-0.804464	2.133094e-49	-8.615850e-47
Msa0663290	Msa1452790	-0.828975	6.667517e-55	-8.615850e-47
Msa0664070	Msa1452790	-0.817700	2.878529e-52	-8.615850e-47
Msa0681880	Msa1452790	0.806163	9.398648e-50	-8.615850e-47
Msa0685390	Msa1452790	0.809631	1.720310e-50	-8.615850e-47
Msa0704780	Msa1452790	0.948709	5.508615e-107	-8.615850e-47
Msa0705050	Msa1452790	0.820895	5.385557e-53	-8.615850e-47
Msa0732970	Msa1452790	-0.801687	8.004754e-49	-8.615850e-47
Msa0774060	Msa1452790	-0.805342	1.398178e-49	-8.615850e-47
Msa0840520	Msa1452790	-0.812565	3.976560e-51	-8.615850e-47
Msa0129930	Msa1452790	0.813212	2.868860e-51	-8.615850e-47
Msa0134380	Msa1452790	0.809847	1.545182e-50	-8.615850e-47
Msa0137010	Msa1452790	0.810772	9.763281e-51	-8.615850e-47
Msa0223190	Msa1452790	0.805117	1.558643e-49	-8.615850e-47
Msa0229750	Msa1452790	0.844719	6.351409e-59	-8.615850e-47
Msa1297070	Msa1452790	-0.813741	2.195182e-51	-8.615850e-47
Msa1328630	Msa1452790	0.816459	5.469495e-52	-8.615850e-47
Msa1328720	Msa1452790	0.821003	5.085119e-53	-8.615850e-47
Msa1328870	Msa1452790	-0.805551	1.264037e-49	-8.615850e-47
Msa0371350	Msa1452790	0.805891	1.072416e-49	-8.615850e-47
Msa0387740	Msa1452790	0.832325	1.008376e-55	-8.615850e-47
Msa0403720	Msa1452790	0.824653	7.183521e-54	-8.615850e-47
Msa0416390	Msa1452790	-0.829724	4.386011e-55	-8.615850e-47
Msa0419420	Msa1452790	0.823759	1.165366e-53	-8.615850e-47
Msa0428330	Msa1452790	0.805035	1.621338e-49	-8.615850e-47
Msa0436100	Msa1452790	-0.801869	7.347152e-49	-8.615850e-47
Msa0438680	Msa1452790	0.817929	2.555170e-52	-8.615850e-47
Msa1085570	Msa1452790	0.812889	3.378246e-51	-8.615850e-47
Msa1101610	Msa1452790	0.833844	4.223411e-56	-8.615850e-47
Msa1102060	Msa1452790	0.806663	7.372960e-50	-8.615850e-47
Msa0264420	Msa1452790	0.801761	7.728570e-49	-8.615850e-47
Msa0276850	Msa1452790	-0.815396	9.443854e-52	-8.615850e-47
Msa0302310	Msa1452790	0.816068	6.691616e-52	-8.615850e-47
Msa0316720	Msa1452790	0.804651	1.950429e-49	-8.615850e-47
Msa0339670	Msa1452790	0.806390	8.419851e-50	-8.615850e-47
Msa1133440	Msa1452790	0.813031	3.144114e-51	-8.615850e-47
Msa1183910	Msa1452790	-0.806561	7.747805e-50	-8.615850e-47
Msa1199580	Msa1452790	0.818847	1.582803e-52	-8.615850e-47
Msa1206040	Msa1452790	-0.805727	1.160745e-49	-8.615850e-47
Msa0506750	Msa1452790	-0.804089	2.553690e-49	-8.615850e-47
Msa0568290	Msa1452790	0.835739	1.408000e-56	-8.615850e-47
Msa0568460	Msa1452790	0.821879	3.193125e-53	-8.615850e-47
Msa0568710	Msa1452790	-0.814440	1.538714e-51	-8.615850e-47
Msa0572270	Msa1452790	0.816612	5.056088e-52	-8.615850e-47
Msa0930950	Msa1452790	0.809786	1.592793e-50	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1452790	MtrunA17_Chr8g0382991	90.452	199	12	2	39	235	1	194	4.31e-128	360

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1452790	AT2G21970.1	55.670	194	81	3	39	229	1	192	2.15e-61	191

Find 86 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CAAACAAACTGATTCTTTAA+TGG	0.149334	tig0034162:+23100	Msa1452790:CDS
TTCTTTACGGGTCTTGATTA+TGG	0.245905	tig0034162:-23321	None:intergenic
GCCTTCTGGTTCAGCCGGTT+TGG	0.277098	tig0034162:-23228	None:intergenic
CCTTCTGGTTCAGCCGGTTT+GGG	0.278742	tig0034162:-23227	None:intergenic
ATGTTTGTGTTGGCGCCTTC+TGG	0.284930	tig0034162:-23242	None:intergenic
TAACTTGCATGTCTTCTTTA+CGG	0.293401	tig0034162:-23334	None:intergenic
CTTAGAACTCTCGATATATT+CGG	0.302152	tig0034162:-23390	None:intergenic
TTGTTTGGGTGCGGTTACTA+TGG	0.311981	tig0034162:+23693	Msa1452790:CDS
GAATTCGGTGTTCAGGAAAA+TGG	0.321728	tig0034162:+23639	Msa1452790:CDS
AACTTGCATGTCTTCTTTAC+GGG	0.334949	tig0034162:-23333	None:intergenic
AGCAGTTGCGGAGAAGAAAT+TGG	0.350239	tig0034162:-22956	None:intergenic
GAGGCGGGTGGGATTTGTTT+GGG	0.354432	tig0034162:+23679	Msa1452790:CDS
ACTTGAGAAGTGGTAGTTGT+AGG	0.364804	tig0034162:-23061	None:intergenic
GGAGGCGGGTGGGATTTGTT+TGG	0.366265	tig0034162:+23678	Msa1452790:CDS
ATGTAACTGATTTCATTTAG+TGG	0.375551	tig0034162:+24122	Msa1452790:three_prime_UTR
TGGTTCAGCCGGTTTGGGTT+TGG	0.403211	tig0034162:-23222	None:intergenic
GAACGAGACGATGATACTTT+TGG	0.405757	tig0034162:-23161	None:intergenic
GGAGTTGGTGACGGGGAATT+CGG	0.411121	tig0034162:+23624	Msa1452790:CDS
CTTGAGAAGTGGTAGTTGTA+GGG	0.421678	tig0034162:-23060	None:intergenic
TTCCGTCACCAAACCCAAAC+CGG	0.422142	tig0034162:+23214	Msa1452790:CDS
TTCAGGAAAATGGATATTGC+AGG	0.423134	tig0034162:+23649	Msa1452790:CDS
CGCGAATTTAGTATTGAACT+TGG	0.427182	tig0034162:+23978	Msa1452790:three_prime_UTR
TGACGGGGAATTCGGTGTTC+AGG	0.428337	tig0034162:+23632	Msa1452790:CDS
AATGAACGAACGAACGTTGA+AGG	0.431669	tig0034162:-23029	None:intergenic
ATCAATTAGCGAATCAATGA+AGG	0.432023	tig0034162:-23785	None:intergenic
CGGAGATGATTTCGAAATCC+TGG	0.437279	tig0034162:-23418	None:intergenic
CTATGGCGGCAATGTTTGCT+TGG	0.440446	tig0034162:+23710	Msa1452790:CDS
TTCATTATTCAAATTTAAAG+TGG	0.447869	tig0034162:+24086	Msa1452790:three_prime_UTR
GTGACGGTGGAGTTGGTGAC+GGG	0.448839	tig0034162:+23616	Msa1452790:CDS
CTAATTGATCAAATCGTTGA+CGG	0.458559	tig0034162:+23799	Msa1452790:CDS
GTCTTGATTATGGCGCCGAC+TGG	0.478139	tig0034162:-23311	None:intergenic
TTGGCGCCTTCTGGTTCAGC+CGG	0.478968	tig0034162:-23233	None:intergenic
CGTTCCCGCCCCAGAAAACC+TGG	0.481238	tig0034162:+23179	Msa1452790:CDS
AGCCGGTTTGGGTTTGGTGA+CGG	0.482257	tig0034162:-23216	None:intergenic
TGTTACCATGGCGAGGCGGC+CGG	0.483455	tig0034162:-23438	None:intergenic
CCGCCCCAGAAAACCTGGTC+CGG	0.484254	tig0034162:+23184	Msa1452790:CDS
AAGAATCAGTTTGTTTGTGA+GGG	0.497960	tig0034162:-23094	None:intergenic
TTGGTGACGGAAAATTGAAC+CGG	0.499068	tig0034162:-23203	None:intergenic
GATTATGGCGCCGACTGGAT+CGG	0.505400	tig0034162:-23306	None:intergenic
AATGGATATTGCAGGGATAA+CGG	0.508574	tig0034162:+23657	Msa1452790:CDS
AAAGTTTGAGACTTGAGAAG+TGG	0.510886	tig0034162:-23071	None:intergenic
TTCGGAAAGAGTGGCGAAGA+AGG	0.517357	tig0034162:-23372	None:intergenic
AAAGAATCAGTTTGTTTGTG+AGG	0.521674	tig0034162:-23095	None:intergenic
TATTGCAGGGATAACGGAGG+CGG	0.525078	tig0034162:+23663	Msa1452790:CDS
ACGGAAAATTGAACCGGACC+AGG	0.525085	tig0034162:-23197	None:intergenic
GCAGATGGTGTTTGCAGCGA+CGG	0.525390	tig0034162:+23594	Msa1452790:intron
ATGTTCATAGATTGTAAGAT+GGG	0.530332	tig0034162:+24023	Msa1452790:three_prime_UTR
TTGTAGAACGATGTTTGTGT+TGG	0.542345	tig0034162:-23252	None:intergenic
TTTGGGTGCGGTTACTATGG+CGG	0.548728	tig0034162:+23696	Msa1452790:CDS
CTATGCACTCTCAGATCATA+CGG	0.549836	tig0034162:+23281	Msa1452790:CDS
GGGTGGGATTTGTTTGGGTG+CGG	0.551031	tig0034162:+23684	Msa1452790:CDS
CAGGGATAACGGAGGCGGGT+GGG	0.551178	tig0034162:+23668	Msa1452790:CDS
GGGTGAACTCTGATTCATCA+TGG	0.556267	tig0034162:+23843	Msa1452790:exon
GCAGGGATAACGGAGGCGGG+TGG	0.556957	tig0034162:+23667	Msa1452790:CDS
CGAGAGTTCTAAGAAAAGCC+AGG	0.559263	tig0034162:+23400	Msa1452790:CDS
GGTGACGGTGGAGTTGGTGA+CGG	0.559321	tig0034162:+23615	Msa1452790:CDS
ACAATCTATGAACATGCTCA+AGG	0.561369	tig0034162:-24015	None:intergenic
GTGTGACTAACTGCGAGCTC+CGG	0.567817	tig0034162:+23135	Msa1452790:CDS
ATTGCAGGGATAACGGAGGC+GGG	0.570947	tig0034162:+23664	Msa1452790:CDS
CATCTCCGGCCGCCTCGCCA+TGG	0.570988	tig0034162:+23433	Msa1452790:CDS
CATGTTCATAGATTGTAAGA+TGG	0.573227	tig0034162:+24022	Msa1452790:three_prime_UTR
TGACGGTGGAGTTGGTGACG+GGG	0.573283	tig0034162:+23617	Msa1452790:CDS
CAGGATTTCGAAATCATCTC+CGG	0.574628	tig0034162:+23419	Msa1452790:CDS
TAATAACGAGTAAGCAGTTG+CGG	0.582455	tig0034162:-22968	None:intergenic
ATTGTAAGATGGGTGGTTAG+CGG	0.585816	tig0034162:+24033	Msa1452790:three_prime_UTR
CCCAAACCGGCTGAACCAGA+AGG	0.586835	tig0034162:+23227	Msa1452790:CDS
AGCGACGGTGACGGTGGAGT+TGG	0.587633	tig0034162:+23609	Msa1452790:CDS
TGATTCATCATGGTTTGATG+AGG	0.593825	tig0034162:+23853	Msa1452790:exon
CTCGATATATTCGGAAAGAG+TGG	0.596447	tig0034162:-23381	None:intergenic
TGTGAAGATTCGATCCACTC+TGG	0.602920	tig0034162:-23749	None:intergenic
TTCATAGATTGTAAGATGGG+TGG	0.607672	tig0034162:+24026	Msa1452790:three_prime_UTR
CAATCTATGAACATGCTCAA+GGG	0.610585	tig0034162:-24014	None:intergenic
GAAGAAGGAGGACACGTCAT+CGG	0.616933	tig0034162:-23357	None:intergenic
GGAAAGAGTGGCGAAGAAGG+AGG	0.623174	tig0034162:-23369	None:intergenic
GGTGTTTGCAGCGACGGTGA+CGG	0.625726	tig0034162:+23600	Msa1452790:CDS
CTCAAGTGCTCGTACCAGAG+TGG	0.631041	tig0034162:+23735	Msa1452790:CDS
TTGTTCTATGATGATAGCGA+GGG	0.632266	tig0034162:+23823	Msa1452790:CDS
TTTGTTCTATGATGATAGCG+AGG	0.632796	tig0034162:+23822	Msa1452790:CDS
TCAGGAAAATGGATATTGCA+GGG	0.643208	tig0034162:+23650	Msa1452790:CDS
CAAACATCGTTCTACAACCG+CGG	0.645183	tig0034162:+23258	Msa1452790:CDS
GTTTGCAGCGACGGTGACGG+TGG	0.675734	tig0034162:+23603	Msa1452790:CDS
ATTGGATACGTAGCACACAC+AGG	0.687544	tig0034162:-22938	None:intergenic
AGGTATCAGACAAAACTATG+TGG	0.693305	tig0034162:-22918	None:intergenic
GGATATTGCAGGGATAACGG+AGG	0.721943	tig0034162:+23660	Msa1452790:CDS
GATCTGAGAGTGCATAGCCG+CGG	0.723172	tig0034162:-23275	None:intergenic
TCATACGGTTCCGATCCAGT+CGG	0.759723	tig0034162:+23296	Msa1452790:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	ATTAATACTATGACTTTTTT+TGG	+	tig0034162:22996-23015	Msa1452790:exon	15.0%
!!	TTCATTATTCAAATTTAAAG+TGG	+	tig0034162:24086-24105	Msa1452790:three_prime_UTR	15.0%
!!!	ATTAATACTATGACTTTTTT+TGG	+	tig0034162:22996-23015	Msa1452790:exon	15.0%
!!	TTCATTATTCAAATTTAAAG+TGG	+	tig0034162:24086-24105	Msa1452790:three_prime_UTR	15.0%
!!	CATTATTCTCAGTTTATTAT+TGG	+	tig0034162:23501-23520	Msa1452790:intron	20.0%
!!	TTCCTCTAATATAGTATATA+TGG	-	tig0034162:23544-23563	None:intergenic	20.0%
!!	CATTATTCTCAGTTTATTAT+TGG	+	tig0034162:23501-23520	Msa1452790:intron	20.0%
!!	TTCCTCTAATATAGTATATA+TGG	-	tig0034162:23544-23563	None:intergenic	20.0%
!!	CAAACAAACTGATTCTTTAA+TGG	+	tig0034162:23100-23119	Msa1452790:CDS	25.0%
!	AATATAGTATATATGGACAC+AGG	-	tig0034162:23537-23556	None:intergenic	25.0%
!	GTCCATATATACTATATTAG+AGG	+	tig0034162:23539-23558	Msa1452790:intron	25.0%
!!!	ATTGTTGCTTTTTATTGATG+TGG	+	tig0034162:23567-23586	Msa1452790:intron	25.0%
!	ATGTTCATAGATTGTAAGAT+GGG	+	tig0034162:24023-24042	Msa1452790:three_prime_UTR	25.0%
!!	ATGTAACTGATTTCATTTAG+TGG	+	tig0034162:24122-24141	Msa1452790:three_prime_UTR	25.0%
!!	CAAACAAACTGATTCTTTAA+TGG	+	tig0034162:23100-23119	Msa1452790:CDS	25.0%
!	AATATAGTATATATGGACAC+AGG	-	tig0034162:23537-23556	None:intergenic	25.0%
!	GTCCATATATACTATATTAG+AGG	+	tig0034162:23539-23558	Msa1452790:intron	25.0%
!!!	ATTGTTGCTTTTTATTGATG+TGG	+	tig0034162:23567-23586	Msa1452790:intron	25.0%
!	ATGTTCATAGATTGTAAGAT+GGG	+	tig0034162:24023-24042	Msa1452790:three_prime_UTR	25.0%
!!	ATGTAACTGATTTCATTTAG+TGG	+	tig0034162:24122-24141	Msa1452790:three_prime_UTR	25.0%
!	AAGAATCAGTTTGTTTGTGA+GGG	-	tig0034162:23097-23116	None:intergenic	30.0%
!	AAAGAATCAGTTTGTTTGTG+AGG	-	tig0034162:23098-23117	None:intergenic	30.0%
!	TAACTTGCATGTCTTCTTTA+CGG	-	tig0034162:23337-23356	None:intergenic	30.0%
	CTTAGAACTCTCGATATATT+CGG	-	tig0034162:23393-23412	None:intergenic	30.0%
	ATCAATTAGCGAATCAATGA+AGG	-	tig0034162:23788-23807	None:intergenic	30.0%
	CTAATTGATCAAATCGTTGA+CGG	+	tig0034162:23799-23818	Msa1452790:CDS	30.0%
	CATGTTCATAGATTGTAAGA+TGG	+	tig0034162:24022-24041	Msa1452790:three_prime_UTR	30.0%
!	AAGAATCAGTTTGTTTGTGA+GGG	-	tig0034162:23097-23116	None:intergenic	30.0%
!	AAAGAATCAGTTTGTTTGTG+AGG	-	tig0034162:23098-23117	None:intergenic	30.0%
!	TAACTTGCATGTCTTCTTTA+CGG	-	tig0034162:23337-23356	None:intergenic	30.0%
	CTTAGAACTCTCGATATATT+CGG	-	tig0034162:23393-23412	None:intergenic	30.0%
	ATCAATTAGCGAATCAATGA+AGG	-	tig0034162:23788-23807	None:intergenic	30.0%
	CTAATTGATCAAATCGTTGA+CGG	+	tig0034162:23799-23818	Msa1452790:CDS	30.0%
	CATGTTCATAGATTGTAAGA+TGG	+	tig0034162:24022-24041	Msa1452790:three_prime_UTR	30.0%
	AGGTATCAGACAAAACTATG+TGG	-	tig0034162:22921-22940	None:intergenic	35.0%
	TAATAACGAGTAAGCAGTTG+CGG	-	tig0034162:22971-22990	None:intergenic	35.0%
!	AAAGTTTGAGACTTGAGAAG+TGG	-	tig0034162:23074-23093	None:intergenic	35.0%
	TTGTAGAACGATGTTTGTGT+TGG	-	tig0034162:23255-23274	None:intergenic	35.0%
	TTCTTTACGGGTCTTGATTA+TGG	-	tig0034162:23324-23343	None:intergenic	35.0%
	AACTTGCATGTCTTCTTTAC+GGG	-	tig0034162:23336-23355	None:intergenic	35.0%
	GATCACATGTGTTAGTGTTA+GGG	-	tig0034162:23467-23486	None:intergenic	35.0%
	TGATCACATGTGTTAGTGTT+AGG	-	tig0034162:23468-23487	None:intergenic	35.0%
!!!	GTTGCTTTTTATTGATGTGG+TGG	+	tig0034162:23570-23589	Msa1452790:intron	35.0%
	TTCAGGAAAATGGATATTGC+AGG	+	tig0034162:23649-23668	Msa1452790:CDS	35.0%
	TCAGGAAAATGGATATTGCA+GGG	+	tig0034162:23650-23669	Msa1452790:CDS	35.0%
	AATGGATATTGCAGGGATAA+CGG	+	tig0034162:23657-23676	Msa1452790:CDS	35.0%
!	TTTGTTCTATGATGATAGCG+AGG	+	tig0034162:23822-23841	Msa1452790:CDS	35.0%
!	TTGTTCTATGATGATAGCGA+GGG	+	tig0034162:23823-23842	Msa1452790:CDS	35.0%
	TGATTCATCATGGTTTGATG+AGG	+	tig0034162:23853-23872	Msa1452790:exon	35.0%
!	CGCGAATTTAGTATTGAACT+TGG	+	tig0034162:23978-23997	Msa1452790:three_prime_UTR	35.0%
	CAATCTATGAACATGCTCAA+GGG	-	tig0034162:24017-24036	None:intergenic	35.0%
	ACAATCTATGAACATGCTCA+AGG	-	tig0034162:24018-24037	None:intergenic	35.0%
	TTCATAGATTGTAAGATGGG+TGG	+	tig0034162:24026-24045	Msa1452790:three_prime_UTR	35.0%
	AGGTATCAGACAAAACTATG+TGG	-	tig0034162:22921-22940	None:intergenic	35.0%
	TAATAACGAGTAAGCAGTTG+CGG	-	tig0034162:22971-22990	None:intergenic	35.0%
!	AAAGTTTGAGACTTGAGAAG+TGG	-	tig0034162:23074-23093	None:intergenic	35.0%
	TTGTAGAACGATGTTTGTGT+TGG	-	tig0034162:23255-23274	None:intergenic	35.0%
	TTCTTTACGGGTCTTGATTA+TGG	-	tig0034162:23324-23343	None:intergenic	35.0%
	AACTTGCATGTCTTCTTTAC+GGG	-	tig0034162:23336-23355	None:intergenic	35.0%
	GATCACATGTGTTAGTGTTA+GGG	-	tig0034162:23467-23486	None:intergenic	35.0%
	TGATCACATGTGTTAGTGTT+AGG	-	tig0034162:23468-23487	None:intergenic	35.0%
!!!	GTTGCTTTTTATTGATGTGG+TGG	+	tig0034162:23570-23589	Msa1452790:intron	35.0%
	TTCAGGAAAATGGATATTGC+AGG	+	tig0034162:23649-23668	Msa1452790:CDS	35.0%
	TCAGGAAAATGGATATTGCA+GGG	+	tig0034162:23650-23669	Msa1452790:CDS	35.0%
	AATGGATATTGCAGGGATAA+CGG	+	tig0034162:23657-23676	Msa1452790:CDS	35.0%
!	TTTGTTCTATGATGATAGCG+AGG	+	tig0034162:23822-23841	Msa1452790:CDS	35.0%
!	TTGTTCTATGATGATAGCGA+GGG	+	tig0034162:23823-23842	Msa1452790:CDS	35.0%
	TGATTCATCATGGTTTGATG+AGG	+	tig0034162:23853-23872	Msa1452790:exon	35.0%
!	CGCGAATTTAGTATTGAACT+TGG	+	tig0034162:23978-23997	Msa1452790:three_prime_UTR	35.0%
	CAATCTATGAACATGCTCAA+GGG	-	tig0034162:24017-24036	None:intergenic	35.0%
	ACAATCTATGAACATGCTCA+AGG	-	tig0034162:24018-24037	None:intergenic	35.0%
	TTCATAGATTGTAAGATGGG+TGG	+	tig0034162:24026-24045	Msa1452790:three_prime_UTR	35.0%
	AATGAACGAACGAACGTTGA+AGG	-	tig0034162:23032-23051	None:intergenic	40.0%
	CTTGAGAAGTGGTAGTTGTA+GGG	-	tig0034162:23063-23082	None:intergenic	40.0%
	ACTTGAGAAGTGGTAGTTGT+AGG	-	tig0034162:23064-23083	None:intergenic	40.0%
!	GAACGAGACGATGATACTTT+TGG	-	tig0034162:23164-23183	None:intergenic	40.0%
!!	TTGGTGACGGAAAATTGAAC+CGG	-	tig0034162:23206-23225	None:intergenic	40.0%
	CTATGCACTCTCAGATCATA+CGG	+	tig0034162:23281-23300	Msa1452790:CDS	40.0%
	CTCGATATATTCGGAAAGAG+TGG	-	tig0034162:23384-23403	None:intergenic	40.0%
	CAGGATTTCGAAATCATCTC+CGG	+	tig0034162:23419-23438	Msa1452790:CDS	40.0%
!!!	GTGTTAGGGTTTTGTTACCA+TGG	-	tig0034162:23453-23472	None:intergenic	40.0%
!!	GAATTCGGTGTTCAGGAAAA+TGG	+	tig0034162:23639-23658	Msa1452790:CDS	40.0%
	ATTGTAAGATGGGTGGTTAG+CGG	+	tig0034162:24033-24052	Msa1452790:three_prime_UTR	40.0%
	AATGAACGAACGAACGTTGA+AGG	-	tig0034162:23032-23051	None:intergenic	40.0%
	CTTGAGAAGTGGTAGTTGTA+GGG	-	tig0034162:23063-23082	None:intergenic	40.0%
	ACTTGAGAAGTGGTAGTTGT+AGG	-	tig0034162:23064-23083	None:intergenic	40.0%
!	GAACGAGACGATGATACTTT+TGG	-	tig0034162:23164-23183	None:intergenic	40.0%
!!	TTGGTGACGGAAAATTGAAC+CGG	-	tig0034162:23206-23225	None:intergenic	40.0%
	CTATGCACTCTCAGATCATA+CGG	+	tig0034162:23281-23300	Msa1452790:CDS	40.0%
	CTCGATATATTCGGAAAGAG+TGG	-	tig0034162:23384-23403	None:intergenic	40.0%
	CAGGATTTCGAAATCATCTC+CGG	+	tig0034162:23419-23438	Msa1452790:CDS	40.0%
!!!	GTGTTAGGGTTTTGTTACCA+TGG	-	tig0034162:23453-23472	None:intergenic	40.0%
!!	GAATTCGGTGTTCAGGAAAA+TGG	+	tig0034162:23639-23658	Msa1452790:CDS	40.0%
	ATTGTAAGATGGGTGGTTAG+CGG	+	tig0034162:24033-24052	Msa1452790:three_prime_UTR	40.0%
	ATTGGATACGTAGCACACAC+AGG	-	tig0034162:22941-22960	None:intergenic	45.0%
	AGCAGTTGCGGAGAAGAAAT+TGG	-	tig0034162:22959-22978	None:intergenic	45.0%
!!	ACGATGATACTTTTGGTGGC+CGG	-	tig0034162:23157-23176	None:intergenic	45.0%
!	CGAGACGATGATACTTTTGG+TGG	-	tig0034162:23161-23180	None:intergenic	45.0%
	CAAACATCGTTCTACAACCG+CGG	+	tig0034162:23258-23277	Msa1452790:CDS	45.0%
!!	CGAGAGTTCTAAGAAAAGCC+AGG	+	tig0034162:23400-23419	Msa1452790:CDS	45.0%
	CGGAGATGATTTCGAAATCC+TGG	-	tig0034162:23421-23440	None:intergenic	45.0%
!	TATTGATGTGGTGGTGCAGA+TGG	+	tig0034162:23579-23598	Msa1452790:intron	45.0%
	TTGTTTGGGTGCGGTTACTA+TGG	+	tig0034162:23693-23712	Msa1452790:CDS	45.0%
	TGTGAAGATTCGATCCACTC+TGG	-	tig0034162:23752-23771	None:intergenic	45.0%
	GGGTGAACTCTGATTCATCA+TGG	+	tig0034162:23843-23862	Msa1452790:exon	45.0%
	ATTGGATACGTAGCACACAC+AGG	-	tig0034162:22941-22960	None:intergenic	45.0%
	AGCAGTTGCGGAGAAGAAAT+TGG	-	tig0034162:22959-22978	None:intergenic	45.0%
!!	ACGATGATACTTTTGGTGGC+CGG	-	tig0034162:23157-23176	None:intergenic	45.0%
!	CGAGACGATGATACTTTTGG+TGG	-	tig0034162:23161-23180	None:intergenic	45.0%
	CAAACATCGTTCTACAACCG+CGG	+	tig0034162:23258-23277	Msa1452790:CDS	45.0%
!!	CGAGAGTTCTAAGAAAAGCC+AGG	+	tig0034162:23400-23419	Msa1452790:CDS	45.0%
	CGGAGATGATTTCGAAATCC+TGG	-	tig0034162:23421-23440	None:intergenic	45.0%
!	TATTGATGTGGTGGTGCAGA+TGG	+	tig0034162:23579-23598	Msa1452790:intron	45.0%
	TTGTTTGGGTGCGGTTACTA+TGG	+	tig0034162:23693-23712	Msa1452790:CDS	45.0%
	TGTGAAGATTCGATCCACTC+TGG	-	tig0034162:23752-23771	None:intergenic	45.0%
	GGGTGAACTCTGATTCATCA+TGG	+	tig0034162:23843-23862	Msa1452790:exon	45.0%
!	TGAACCGGACCAGGTTTTCT+GGG	-	tig0034162:23191-23210	None:intergenic	50.0%
!	TTGAACCGGACCAGGTTTTC+TGG	-	tig0034162:23192-23211	None:intergenic	50.0%
	ACGGAAAATTGAACCGGACC+AGG	-	tig0034162:23200-23219	None:intergenic	50.0%
	TTCCGTCACCAAACCCAAAC+CGG	+	tig0034162:23214-23233	Msa1452790:CDS	50.0%
!	ATGTTTGTGTTGGCGCCTTC+TGG	-	tig0034162:23245-23264	None:intergenic	50.0%
	TCATACGGTTCCGATCCAGT+CGG	+	tig0034162:23296-23315	Msa1452790:CDS	50.0%
	GAAGAAGGAGGACACGTCAT+CGG	-	tig0034162:23360-23379	None:intergenic	50.0%
	TTCGGAAAGAGTGGCGAAGA+AGG	-	tig0034162:23375-23394	None:intergenic	50.0%
!!	GTTTTGTTACCATGGCGAGG+CGG	-	tig0034162:23445-23464	None:intergenic	50.0%
!!!	AGGGTTTTGTTACCATGGCG+AGG	-	tig0034162:23448-23467	None:intergenic	50.0%
!	GGATATTGCAGGGATAACGG+AGG	+	tig0034162:23660-23679	Msa1452790:CDS	50.0%
!!	TATTGCAGGGATAACGGAGG+CGG	+	tig0034162:23663-23682	Msa1452790:CDS	50.0%
	TTTGGGTGCGGTTACTATGG+CGG	+	tig0034162:23696-23715	Msa1452790:CDS	50.0%
	CTATGGCGGCAATGTTTGCT+TGG	+	tig0034162:23710-23729	Msa1452790:CDS	50.0%
!	TGAACCGGACCAGGTTTTCT+GGG	-	tig0034162:23191-23210	None:intergenic	50.0%
!	TTGAACCGGACCAGGTTTTC+TGG	-	tig0034162:23192-23211	None:intergenic	50.0%
	ACGGAAAATTGAACCGGACC+AGG	-	tig0034162:23200-23219	None:intergenic	50.0%
	TTCCGTCACCAAACCCAAAC+CGG	+	tig0034162:23214-23233	Msa1452790:CDS	50.0%
!	ATGTTTGTGTTGGCGCCTTC+TGG	-	tig0034162:23245-23264	None:intergenic	50.0%
	TCATACGGTTCCGATCCAGT+CGG	+	tig0034162:23296-23315	Msa1452790:CDS	50.0%
	GAAGAAGGAGGACACGTCAT+CGG	-	tig0034162:23360-23379	None:intergenic	50.0%
	TTCGGAAAGAGTGGCGAAGA+AGG	-	tig0034162:23375-23394	None:intergenic	50.0%
!!	GTTTTGTTACCATGGCGAGG+CGG	-	tig0034162:23445-23464	None:intergenic	50.0%
!!!	AGGGTTTTGTTACCATGGCG+AGG	-	tig0034162:23448-23467	None:intergenic	50.0%
!	GGATATTGCAGGGATAACGG+AGG	+	tig0034162:23660-23679	Msa1452790:CDS	50.0%
!!	TATTGCAGGGATAACGGAGG+CGG	+	tig0034162:23663-23682	Msa1452790:CDS	50.0%
	TTTGGGTGCGGTTACTATGG+CGG	+	tig0034162:23696-23715	Msa1452790:CDS	50.0%
	CTATGGCGGCAATGTTTGCT+TGG	+	tig0034162:23710-23729	Msa1452790:CDS	50.0%
	GTGTGACTAACTGCGAGCTC+CGG	+	tig0034162:23135-23154	Msa1452790:CDS	55.0%
!	GAACCGGACCAGGTTTTCTG+GGG	-	tig0034162:23190-23209	None:intergenic	55.0%
!!	AGCCGGTTTGGGTTTGGTGA+CGG	-	tig0034162:23219-23238	None:intergenic	55.0%
!!	TGGTTCAGCCGGTTTGGGTT+TGG	-	tig0034162:23225-23244	None:intergenic	55.0%
!!	CCTTCTGGTTCAGCCGGTTT+GGG	-	tig0034162:23230-23249	None:intergenic	55.0%
!	GATCTGAGAGTGCATAGCCG+CGG	-	tig0034162:23278-23297	None:intergenic	55.0%
!!	GATTATGGCGCCGACTGGAT+CGG	-	tig0034162:23309-23328	None:intergenic	55.0%
!!	GTCTTGATTATGGCGCCGAC+TGG	-	tig0034162:23314-23333	None:intergenic	55.0%
	GGAAAGAGTGGCGAAGAAGG+AGG	-	tig0034162:23372-23391	None:intergenic	55.0%
	GCAGATGGTGTTTGCAGCGA+CGG	+	tig0034162:23594-23613	Msa1452790:intron	55.0%
!!	GGAGTTGGTGACGGGGAATT+CGG	+	tig0034162:23624-23643	Msa1452790:CDS	55.0%
!!	TGACGGGGAATTCGGTGTTC+AGG	+	tig0034162:23632-23651	Msa1452790:CDS	55.0%
!!	ATTGCAGGGATAACGGAGGC+GGG	+	tig0034162:23664-23683	Msa1452790:CDS	55.0%
!	GAGGCGGGTGGGATTTGTTT+GGG	+	tig0034162:23679-23698	Msa1452790:CDS	55.0%
!	GGGTGGGATTTGTTTGGGTG+CGG	+	tig0034162:23684-23703	Msa1452790:CDS	55.0%
	CTCAAGTGCTCGTACCAGAG+TGG	+	tig0034162:23735-23754	Msa1452790:CDS	55.0%
	GTGTGACTAACTGCGAGCTC+CGG	+	tig0034162:23135-23154	Msa1452790:CDS	55.0%
!	GAACCGGACCAGGTTTTCTG+GGG	-	tig0034162:23190-23209	None:intergenic	55.0%
!!	AGCCGGTTTGGGTTTGGTGA+CGG	-	tig0034162:23219-23238	None:intergenic	55.0%
!!	TGGTTCAGCCGGTTTGGGTT+TGG	-	tig0034162:23225-23244	None:intergenic	55.0%
!!	CCTTCTGGTTCAGCCGGTTT+GGG	-	tig0034162:23230-23249	None:intergenic	55.0%
!	GATCTGAGAGTGCATAGCCG+CGG	-	tig0034162:23278-23297	None:intergenic	55.0%
!!	GATTATGGCGCCGACTGGAT+CGG	-	tig0034162:23309-23328	None:intergenic	55.0%
!!	GTCTTGATTATGGCGCCGAC+TGG	-	tig0034162:23314-23333	None:intergenic	55.0%
	GGAAAGAGTGGCGAAGAAGG+AGG	-	tig0034162:23372-23391	None:intergenic	55.0%
	GCAGATGGTGTTTGCAGCGA+CGG	+	tig0034162:23594-23613	Msa1452790:intron	55.0%
!!	GGAGTTGGTGACGGGGAATT+CGG	+	tig0034162:23624-23643	Msa1452790:CDS	55.0%
!!	TGACGGGGAATTCGGTGTTC+AGG	+	tig0034162:23632-23651	Msa1452790:CDS	55.0%
!!	ATTGCAGGGATAACGGAGGC+GGG	+	tig0034162:23664-23683	Msa1452790:CDS	55.0%
!	GAGGCGGGTGGGATTTGTTT+GGG	+	tig0034162:23679-23698	Msa1452790:CDS	55.0%
!	GGGTGGGATTTGTTTGGGTG+CGG	+	tig0034162:23684-23703	Msa1452790:CDS	55.0%
	CTCAAGTGCTCGTACCAGAG+TGG	+	tig0034162:23735-23754	Msa1452790:CDS	55.0%
	CCCAAACCGGCTGAACCAGA+AGG	+	tig0034162:23227-23246	Msa1452790:CDS	60.0%
!!	GCCTTCTGGTTCAGCCGGTT+TGG	-	tig0034162:23231-23250	None:intergenic	60.0%
!!	TTGGCGCCTTCTGGTTCAGC+CGG	-	tig0034162:23236-23255	None:intergenic	60.0%
	GGTGTTTGCAGCGACGGTGA+CGG	+	tig0034162:23600-23619	Msa1452790:CDS	60.0%
!!	GGTGACGGTGGAGTTGGTGA+CGG	+	tig0034162:23615-23634	Msa1452790:CDS	60.0%
!!	GTGACGGTGGAGTTGGTGAC+GGG	+	tig0034162:23616-23635	Msa1452790:CDS	60.0%
!!	TGACGGTGGAGTTGGTGACG+GGG	+	tig0034162:23617-23636	Msa1452790:CDS	60.0%
!	GGAGGCGGGTGGGATTTGTT+TGG	+	tig0034162:23678-23697	Msa1452790:CDS	60.0%
	CCCAAACCGGCTGAACCAGA+AGG	+	tig0034162:23227-23246	Msa1452790:CDS	60.0%
!!	GCCTTCTGGTTCAGCCGGTT+TGG	-	tig0034162:23231-23250	None:intergenic	60.0%
!!	TTGGCGCCTTCTGGTTCAGC+CGG	-	tig0034162:23236-23255	None:intergenic	60.0%
	GGTGTTTGCAGCGACGGTGA+CGG	+	tig0034162:23600-23619	Msa1452790:CDS	60.0%
!!	GGTGACGGTGGAGTTGGTGA+CGG	+	tig0034162:23615-23634	Msa1452790:CDS	60.0%
!!	GTGACGGTGGAGTTGGTGAC+GGG	+	tig0034162:23616-23635	Msa1452790:CDS	60.0%
!!	TGACGGTGGAGTTGGTGACG+GGG	+	tig0034162:23617-23636	Msa1452790:CDS	60.0%
!	GGAGGCGGGTGGGATTTGTT+TGG	+	tig0034162:23678-23697	Msa1452790:CDS	60.0%
	CGTTCCCGCCCCAGAAAACC+TGG	+	tig0034162:23179-23198	Msa1452790:CDS	65.0%
!!!	CGGACCAGGTTTTCTGGGGC+GGG	-	tig0034162:23186-23205	None:intergenic	65.0%
!!	CCGGACCAGGTTTTCTGGGG+CGG	-	tig0034162:23187-23206	None:intergenic	65.0%
	CCGCCCCAGAAAACCTGGTC+CGG	+	tig0034162:23184-23203	Msa1452790:CDS	65.0%
	TGTTACCATGGCGAGGCGGC+CGG	-	tig0034162:23441-23460	None:intergenic	65.0%
!	GTTTGCAGCGACGGTGACGG+TGG	+	tig0034162:23603-23622	Msa1452790:CDS	65.0%
!	AGCGACGGTGACGGTGGAGT+TGG	+	tig0034162:23609-23628	Msa1452790:CDS	65.0%
!!	CAGGGATAACGGAGGCGGGT+GGG	+	tig0034162:23668-23687	Msa1452790:CDS	65.0%
	CGTTCCCGCCCCAGAAAACC+TGG	+	tig0034162:23179-23198	Msa1452790:CDS	65.0%
!!!	CGGACCAGGTTTTCTGGGGC+GGG	-	tig0034162:23186-23205	None:intergenic	65.0%
!!	CCGGACCAGGTTTTCTGGGG+CGG	-	tig0034162:23187-23206	None:intergenic	65.0%
	CCGCCCCAGAAAACCTGGTC+CGG	+	tig0034162:23184-23203	Msa1452790:CDS	65.0%
	TGTTACCATGGCGAGGCGGC+CGG	-	tig0034162:23441-23460	None:intergenic	65.0%
!	GTTTGCAGCGACGGTGACGG+TGG	+	tig0034162:23603-23622	Msa1452790:CDS	65.0%
!	AGCGACGGTGACGGTGGAGT+TGG	+	tig0034162:23609-23628	Msa1452790:CDS	65.0%
!!	CAGGGATAACGGAGGCGGGT+GGG	+	tig0034162:23668-23687	Msa1452790:CDS	65.0%
!!	GCAGGGATAACGGAGGCGGG+TGG	+	tig0034162:23667-23686	Msa1452790:CDS	70.0%
!!	GCAGGGATAACGGAGGCGGG+TGG	+	tig0034162:23667-23686	Msa1452790:CDS	70.0%
	CATCTCCGGCCGCCTCGCCA+TGG	+	tig0034162:23433-23452	Msa1452790:CDS	75.0%
	CATCTCCGGCCGCCTCGCCA+TGG	+	tig0034162:23433-23452	Msa1452790:CDS	75.0%

Chromosome	Type	Strat	End	Strand	Name
tig0034162	gene	22912	24171	22912	ID=Msa1452790;Name=Msa1452790
tig0034162	mRNA	22912	24171	22912	ID=Msa1452790-mRNA-1;Parent=Msa1452790;Name=Msa1452790-mRNA-1;_AED=0.00;_eAED=0.00;_QI=93\|1\|1\|1\|1\|1\|2\|316\|235
tig0034162	exon	22912	23454	22912	ID=Msa1452790-mRNA-1:exon:18801;Parent=Msa1452790-mRNA-1
tig0034162	exon	23598	24171	23598	ID=Msa1452790-mRNA-1:exon:18802;Parent=Msa1452790-mRNA-1
tig0034162	five_prime_UTR	22912	23004	22912	ID=Msa1452790-mRNA-1:five_prime_utr;Parent=Msa1452790-mRNA-1
tig0034162	CDS	23005	23454	23005	ID=Msa1452790-mRNA-1:cds;Parent=Msa1452790-mRNA-1
tig0034162	CDS	23598	23855	23598	ID=Msa1452790-mRNA-1:cds;Parent=Msa1452790-mRNA-1
tig0034162	three_prime_UTR	23856	24171	23856	ID=Msa1452790-mRNA-1:three_prime_utr;Parent=Msa1452790-mRNA-1

Gene Sequence

>Msa1452790

ATGACTTTTTTTGGTAATATTCAACCTTCAACGTTCGTTCGTTCATTCATTCATTCCCTACAACTACCACTTCTCAAGTCTCAAACTTTCCCTCACAAACAAACTGATTCTTTAATGGCATCTGCAGCGCGTGTGACTAACTGCGAGCTCCGGCCACCAAAAGTATCATCGTCTCGTTCCCGCCCCAGAAAACCTGGTCCGGTTCAATTTTCCGTCACCAAACCCAAACCGGCTGAACCAGAAGGCGCCAACACAAACATCGTTCTACAACCGCGGCTATGCACTCTCAGATCATACGGTTCCGATCCAGTCGGCGCCATAATCAAGACCCGTAAAGAAGACATGCAAGTTACCGATGACGTGTCCTCCTTCTTCGCCACTCTTTCCGAATATATCGAGAGTTCTAAGAAAAGCCAGGATTTCGAAATCATCTCCGGCCGCCTCGCCATGATGGTGTTTGCAGCGACGGTGACGGTGGAGTTGGTGACGGGGAATTCGGTGTTCAGGAAAATGGATATTGCAGGGATAACGGAGGCGGGTGGGATTTGTTTGGGTGCGGTTACTATGGCGGCAATGTTTGCTTGGTTCTCAAGTGCTCGTACCAGAGTGGATCGAATCTTCACAGTCAGCTACAACTCCTTCATTGATTCGCTAATTGATCAAATCGTTGACGGTTTGTTCTATGATGATAGCGAGGGTGAACTCTGA

Protein sequence

>Msa1452790

MTFFGNIQPSTFVRSFIHSLQLPLLKSQTFPHKQTDSLMASAARVTNCELRPPKVSSSRSRPRKPGPVQFSVTKPKPAEPEGANTNIVLQPRLCTLRSYGSDPVGAIIKTRKEDMQVTDDVSSFFATLSEYIESSKKSQDFEIISGRLAMMVFAATVTVELVTGNSVFRKMDIAGITEAGGICLGAVTMAAMFAWFSSARTRVDRIFTVSYNSFIDSLIDQIVDGLFYDDSEGEL*