AlfalfaGEDB | Msa1452790

M. sativa cultivar zhongmu-4 / Msa1452790

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009611 GO:0009628 GO:0009642 GO:0009644 GO:0009765 GO:0009987 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031976 GO:0031984 GO:0034357 GO:0034644 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0051716 GO:0055035 GO:0070141 GO:0071214 GO:0071478 GO:0071482 GO:0071484 GO:0071486 GO:0071492 GO:0097159 GO:0104004 GO:1901363
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1452790	sp\|Q9SJ02\|STEP2_ARATH	55.670	194	81	3	39	229	1	192	2.12e-60	191

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1452790	A0A396GPG0	90.452	199	12	2	39	235	1	194	2.24e-124	360

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0034700	Msa1452790	0.828912	6.906753e-55	-8.615850e-47
Msa0044530	Msa1452790	0.822345	2.489880e-53	-8.615850e-47
Msa0044780	Msa1452790	0.830511	2.818267e-55	-8.615850e-47
Msa0045620	Msa1452790	-0.816250	6.092884e-52	-8.615850e-47
Msa0063190	Msa1452790	-0.823899	1.080251e-53	-8.615850e-47
Msa0091220	Msa1452790	0.826009	3.432472e-54	-8.615850e-47
Msa0091240	Msa1452790	0.824476	7.907993e-54	-8.615850e-47
Msa0129930	Msa1452790	0.813212	2.868860e-51	-8.615850e-47
Msa0134380	Msa1452790	0.809847	1.545182e-50	-8.615850e-47
Msa0137010	Msa1452790	0.810772	9.763281e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1452790	MtrunA17_Chr8g0382991	90.452	199	12	2	39	235	1	194	4.31e-128	360

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1452790	AT2G21970.1	55.670	194	81	3	39	229	1	192	2.15e-61	191

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Find 86 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAATCAGTTTGTTTGTG+AGG	0.521674	tig0034162:-23095	None:intergenic
AAAGTTTGAGACTTGAGAAG+TGG	0.510886	tig0034162:-23071	None:intergenic
AACTTGCATGTCTTCTTTAC+GGG	0.334949	tig0034162:-23333	None:intergenic
AAGAATCAGTTTGTTTGTGA+GGG	0.497960	tig0034162:-23094	None:intergenic
AATGAACGAACGAACGTTGA+AGG	0.431669	tig0034162:-23029	None:intergenic
AATGGATATTGCAGGGATAA+CGG	0.508574	tig0034162:+23657	Msa1452790:CDS
ACAATCTATGAACATGCTCA+AGG	0.561369	tig0034162:-24015	None:intergenic
ACGGAAAATTGAACCGGACC+AGG	0.525085	tig0034162:-23197	None:intergenic
ACTTGAGAAGTGGTAGTTGT+AGG	0.364804	tig0034162:-23061	None:intergenic
AGCAGTTGCGGAGAAGAAAT+TGG	0.350239	tig0034162:-22956	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTTAGAACTCTCGATATATT+CGG	-	tig0034162:23393-23412	None:intergenic	30.0%
ATCAATTAGCGAATCAATGA+AGG	-	tig0034162:23788-23807	None:intergenic	30.0%
CTAATTGATCAAATCGTTGA+CGG	+	tig0034162:23799-23818	Msa1452790:CDS	30.0%
CATGTTCATAGATTGTAAGA+TGG	+	tig0034162:24022-24041	Msa1452790:three_prime_UTR	30.0%
CTTAGAACTCTCGATATATT+CGG	-	tig0034162:23393-23412	None:intergenic	30.0%
ATCAATTAGCGAATCAATGA+AGG	-	tig0034162:23788-23807	None:intergenic	30.0%
CTAATTGATCAAATCGTTGA+CGG	+	tig0034162:23799-23818	Msa1452790:CDS	30.0%
CATGTTCATAGATTGTAAGA+TGG	+	tig0034162:24022-24041	Msa1452790:three_prime_UTR	30.0%
AGGTATCAGACAAAACTATG+TGG	-	tig0034162:22921-22940	None:intergenic	35.0%
TAATAACGAGTAAGCAGTTG+CGG	-	tig0034162:22971-22990	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0034162	gene	22912	24171	22912	ID=Msa1452790;Name=Msa1452790
tig0034162	mRNA	22912	24171	22912	ID=Msa1452790-mRNA-1;Parent=Msa1452790;Name=Msa1452790-mRNA-1;_AED=0.00;_eAED=0.00;_QI=93\|1\|1\|1\|1\|1\|2\|316\|235
tig0034162	exon	22912	23454	22912	ID=Msa1452790-mRNA-1:exon:18801;Parent=Msa1452790-mRNA-1
tig0034162	exon	23598	24171	23598	ID=Msa1452790-mRNA-1:exon:18802;Parent=Msa1452790-mRNA-1
tig0034162	five_prime_UTR	22912	23004	22912	ID=Msa1452790-mRNA-1:five_prime_utr;Parent=Msa1452790-mRNA-1
tig0034162	CDS	23005	23454	23005	ID=Msa1452790-mRNA-1:cds;Parent=Msa1452790-mRNA-1
tig0034162	CDS	23598	23855	23598	ID=Msa1452790-mRNA-1:cds;Parent=Msa1452790-mRNA-1
tig0034162	three_prime_UTR	23856	24171	23856	ID=Msa1452790-mRNA-1:three_prime_utr;Parent=Msa1452790-mRNA-1

Gene Sequence

>Msa1452790

ATGACTTTTTTTGGTAATATTCAACCTTCAACGTTCGTTCGTTCATTCATTCATTCCCTACAACTACCACTTCTCAAGTCTCAAACTTTCCCTCACAAACAAACTGATTCTTTAATGGCATCTGCAGCGCGTGTGACTAACTGCGAGCTCCGGCCACCAAAAGTATCATCGTCTCGTTCCCGCCCCAGAAAACCTGGTCCGGTTCAATTTTCCGTCACCAAACCCAAACCGGCTGAACCAGAAGGCGCCAACACAAACATCGTTCTACAACCGCGGCTATGCACTCTCAGATCATACGGTTCCGATCCAGTCGGCGCCATAATCAAGACCCGTAAAGAAGACATGCAAGTTACCGATGACGTGTCCTCCTTCTTCGCCACTCTTTCCGAATATATCGAGAGTTCTAAGAAAAGCCAGGATTTCGAAATCATCTCCGGCCGCCTCGCCATGATGGTGTTTGCAGCGACGGTGACGGTGGAGTTGGTGACGGGGAATTCGGTGTTCAGGAAAATGGATATTGCAGGGATAACGGAGGCGGGTGGGATTTGTTTGGGTGCGGTTACTATGGCGGCAATGTTTGCTTGGTTCTCAAGTGCTCGTACCAGAGTGGATCGAATCTTCACAGTCAGCTACAACTCCTTCATTGATTCGCTAATTGATCAAATCGTTGACGGTTTGTTCTATGATGATAGCGAGGGTGAACTCTGA

Protein sequence

>Msa1452790

MTFFGNIQPSTFVRSFIHSLQLPLLKSQTFPHKQTDSLMASAARVTNCELRPPKVSSSRSRPRKPGPVQFSVTKPKPAEPEGANTNIVLQPRLCTLRSYGSDPVGAIIKTRKEDMQVTDDVSSFFATLSEYIESSKKSQDFEIISGRLAMMVFAATVTVELVTGNSVFRKMDIAGITEAGGICLGAVTMAAMFAWFSSARTRVDRIFTVSYNSFIDSLIDQIVDGLFYDDSEGEL*