AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1059020


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1059020 MtrunA17_Chr7g0234821 96.239 452 17 0 1 452 1 452 0.0 901
Msa1059020 MtrunA17_Chr8g0339191 71.681 452 123 2 1 452 6 452 0.0 697
Msa1059020 MtrunA17_Chr4g0046311 54.486 457 198 3 1 454 4 453 0.0 550
Msa1059020 MtrunA17_Chr1g0177171 40.347 461 241 7 27 463 39 489 4.86e-119 358
Msa1059020 MtrunA17_Chr5g0439251 40.312 449 251 5 27 462 26 470 9.58e-119 357
Msa1059020 MtrunA17_Chr6g0487261 38.987 454 260 9 4 452 7 448 2.44e-110 336
Msa1059020 MtrunA17_Chr8g0389741 38.444 450 261 7 27 475 29 463 1.41e-107 328
Msa1059020 MtrunA17_Chr4g0034901 37.617 428 261 5 27 452 30 453 1.95e-100 309
Msa1059020 MtrunA17_Chr4g0003281 42.265 362 197 6 3 360 18 371 1.25e-97 299
Msa1059020 MtrunA17_Chr3g0144531 37.168 452 270 8 4 452 8 448 4.82e-96 297
Msa1059020 MtrunA17_Chr4g0075031 37.674 430 251 7 27 453 46 461 1.56e-89 283
Msa1059020 MtrunA17_Chr3g0119541 42.813 327 182 4 21 346 21 343 3.70e-89 276
Msa1059020 MtrunA17_Chr3g0110371 34.498 458 275 8 1 453 3 440 9.19e-89 280
Msa1059020 MtrunA17_Chr8g0378621 34.499 429 265 6 27 452 27 442 2.09e-88 279
Msa1059020 MtrunA17_Chr4g0043851 42.769 325 180 5 27 350 33 352 5.78e-88 275
Msa1059020 MtrunA17_Chr4g0026321 40.729 329 189 5 27 354 30 353 2.68e-86 270
Msa1059020 MtrunA17_Chr1g0161011 33.333 456 285 8 1 453 1 440 2.71e-86 273
Msa1059020 MtrunA17_Chr2g0285901 40.517 348 200 5 1 348 1 341 1.06e-85 269
Msa1059020 MtrunA17_Chr2g0321511 40.653 337 182 7 27 357 30 354 2.76e-85 267
Msa1059020 MtrunA17_Chr3g0121271 33.333 456 277 9 2 453 9 441 3.16e-84 268
Msa1059020 MtrunA17_Chr1g0146831 45.483 321 165 6 27 345 32 344 7.47e-84 263
Msa1059020 MtrunA17_Chr5g0434591 33.551 459 279 10 1 453 1 439 1.09e-83 266
Msa1059020 MtrunA17_Chr4g0043511 35.022 454 269 9 18 452 51 497 3.47e-83 267
Msa1059020 MtrunA17_Chr7g0223961 37.587 431 254 11 27 453 24 443 1.35e-81 259
Msa1059020 MtrunA17_Chr1g0189111 41.049 324 184 5 27 349 32 349 7.82e-81 257
Msa1059020 MtrunA17_Chr4g0064021 37.015 335 206 4 17 350 17 347 4.76e-80 254
Msa1059020 MtrunA17_Chr1g0155001 38.769 325 193 5 27 349 25 345 3.15e-72 234
Msa1059020 MtrunA17_Chr2g0294591 35.650 331 199 8 23 351 27 345 2.22e-66 218
Msa1059020 MtrunA17_Chr2g0294601 35.795 352 205 11 3 351 41 374 1.58e-64 214
Msa1059020 MtrunA17_Chr4g0038981 36.760 321 180 10 27 344 24 324 1.71e-64 211
Msa1059020 MtrunA17_Chr4g0038941 36.728 324 186 8 27 349 53 358 4.49e-63 209
Msa1059020 MtrunA17_Chr7g0250301 35.535 318 193 6 27 344 9 314 5.03e-63 207
Msa1059020 MtrunA17_Chr4g0039011 34.412 340 201 9 14 350 30 350 2.19e-62 207
Msa1059020 MtrunA17_Chr4g0038961 37.117 326 182 10 27 349 24 329 4.76e-62 205
Msa1059020 MtrunA17_Chr4g0039071 34.579 321 198 6 27 346 26 335 9.97e-61 203
Msa1059020 MtrunA17_Chr4g0038971 36.196 326 185 10 27 349 24 329 2.82e-60 200
Msa1059020 MtrunA17_Chr1g0174261 37.755 294 169 7 55 346 1 282 1.42e-58 196
Msa1059020 MtrunA17_Chr2g0306311 29.184 490 287 17 2 453 9 476 7.65e-57 196
Msa1059020 MtrunA17_Chr8g0383311 32.258 434 269 16 27 452 44 460 1.47e-56 195
Msa1059020 MtrunA17_Chr1g0148391 30.682 440 267 17 27 452 27 442 1.70e-55 192
Msa1059020 MtrunA17_Chr4g0039021 36.301 292 168 8 53 341 8 284 4.39e-55 186
Msa1059020 MtrunA17_Chr3g0138741 30.217 460 285 17 3 452 15 448 5.56e-53 186
Msa1059020 MtrunA17_Chr4g0069801 31.221 426 261 18 38 452 39 443 7.81e-53 185
Msa1059020 MtrunA17_Chr4g0062771 29.374 463 293 19 4 453 10 451 1.21e-52 185
Msa1059020 MtrunA17_Chr7g0250321 35.955 267 162 4 27 293 29 286 4.23e-52 178
Msa1059020 MtrunA17_Chr2g0290821 31.136 440 277 15 21 452 23 444 2.55e-51 181
Msa1059020 MtrunA17_Chr5g0436361 36.275 306 183 8 47 349 58 354 2.94e-51 178
Msa1059020 MtrunA17_Chr3g0129341 30.415 434 277 16 27 453 35 450 4.37e-51 180
Msa1059020 MtrunA17_Chr3g0105981 28.241 432 280 16 20 443 21 430 4.39e-48 171
Msa1059020 MtrunA17_Chr4g0076581 30.752 439 275 16 24 452 31 450 7.28e-47 169
Msa1059020 MtrunA17_Chr6g0461601 26.444 450 297 18 27 460 27 458 1.55e-40 152
Msa1059020 MtrunA17_Chr7g0253091 25.745 470 312 20 6 459 6 454 2.06e-38 145
Msa1059020 MtrunA17_Chr2g0294581 34.302 172 102 4 23 190 73 237 5.70e-25 104
Msa1059020 MtrunA17_Chr8g0364811 47.561 82 43 0 129 210 2 83 1.88e-18 80.5
Msa1059020 MtrunA17_Chr5g0447651 41.935 93 51 1 360 452 19 108 1.61e-17 78.6
Msa1059020 MtrunA17_Chr5g0401301 39.316 117 59 3 350 454 294 410 3.38e-17 83.6
Msa1059020 MtrunA17_Chr1g0213651 46.988 83 43 1 370 452 272 353 4.98e-17 82.4
Msa1059020 MtrunA17_Chr4g0076141 41.975 81 47 0 374 454 13 93 3.64e-16 73.9
Msa1059020 MtrunA17_Chr4g0018771 38.261 115 61 3 250 364 86 190 4.46e-15 74.3
Msa1059020 MtrunA17_Chr4g0018861 38.333 120 64 3 245 364 79 188 4.47e-15 74.3
Msa1059020 MtrunA17_Chr4g0018861 35.227 88 57 0 5 92 1 88 4.47e-11 62.8
Msa1059020 MtrunA17_Chr8g0378401 43.373 83 46 1 370 452 28 109 4.65e-15 71.6
Msa1059020 MtrunA17_Chr8g0378381 43.373 83 46 1 370 452 28 109 1.16e-14 70.5
Msa1059020 MtrunA17_Chr3g0120401 44.318 88 48 1 365 452 148 234 2.08e-14 72.8
Msa1059020 MtrunA17_Chr4g0076131 37.975 79 49 0 374 452 28 106 3.22e-14 68.9
Msa1059020 MtrunA17_Chr8g0381081 38.298 94 57 1 360 452 42 135 8.18e-14 69.7
Msa1059020 MtrunA17_Chr3g0096451 37.255 102 62 2 352 452 89 189 2.77e-13 69.7
Msa1059020 MtrunA17_Chr8g0378361 43.038 79 44 1 374 452 30 107 4.24e-13 67.8
Msa1059020 MtrunA17_Chr8g0378371 43.210 81 42 2 372 452 31 107 9.66e-13 64.7
Msa1059020 MtrunA17_Chr5g0443331 38.554 83 50 1 370 452 104 185 6.84e-12 65.9
Msa1059020 MtrunA17_Chr8g0380231 41.667 72 41 1 389 460 32 102 7.06e-12 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1059020 AT3G07320.1 65.747 435 147 1 18 452 17 449 0.0 617
Msa1059020 AT3G23770.1 55.991 434 187 2 21 451 32 464 0.0 527
Msa1059020 AT4G14080.1 52.034 467 207 2 1 451 1 466 0.0 521
Msa1059020 AT4G26830.1 41.845 466 252 9 1 463 1 450 3.73e-125 372
Msa1059020 AT5G55180.2 42.411 448 239 7 21 460 22 458 1.05e-124 372
Msa1059020 AT4G26830.2 42.989 435 236 7 20 451 23 448 3.49e-123 367
Msa1059020 AT5G55180.1 42.141 439 235 7 21 451 22 449 1.84e-120 360
Msa1059020 AT2G05790.1 39.545 440 247 7 27 451 26 461 2.22e-111 338
Msa1059020 AT5G56590.1 39.171 434 255 6 21 452 21 447 1.38e-106 327
Msa1059020 AT4G29360.2 38.723 470 262 7 4 452 15 479 1.52e-100 312
Msa1059020 AT4G29360.1 39.073 453 250 7 21 452 22 469 1.99e-100 311
Msa1059020 AT5G24318.2 37.225 454 274 7 1 452 5 449 3.17e-97 300
Msa1059020 AT5G24318.1 37.225 454 274 7 1 452 5 449 3.99e-97 300
Msa1059020 AT2G01630.3 36.131 429 257 7 27 452 24 438 1.30e-91 286
Msa1059020 AT4G34480.1 36.876 461 262 10 1 452 1 441 1.73e-91 287
Msa1059020 AT2G16230.1 37.587 431 251 8 27 452 26 443 4.00e-91 286
Msa1059020 AT2G01630.1 36.047 430 258 7 27 453 24 439 4.13e-91 286
Msa1059020 AT3G55430.1 36.156 437 257 12 21 452 24 443 5.50e-86 271
Msa1059020 AT3G13560.4 34.266 429 264 6 27 452 27 440 2.46e-85 271
Msa1059020 AT3G13560.1 34.266 429 264 6 27 452 27 440 2.46e-85 271
Msa1059020 AT3G13560.2 34.266 429 264 6 27 452 27 440 2.46e-85 271
Msa1059020 AT3G13560.5 34.266 429 264 6 27 452 27 440 2.46e-85 271
Msa1059020 AT3G13560.3 34.266 429 264 6 27 452 27 440 2.46e-85 271
Msa1059020 AT1G66250.1 34.419 430 264 8 27 453 33 447 3.01e-85 271
Msa1059020 AT3G15800.1 40.597 335 193 5 18 350 35 365 4.80e-85 267
Msa1059020 AT1G11820.3 33.875 431 268 7 27 454 45 461 1.24e-84 269
Msa1059020 AT4G18340.2 40.741 324 186 5 27 349 35 353 1.25e-83 263
Msa1059020 AT4G18340.1 40.741 324 186 5 27 349 35 353 2.34e-83 263
Msa1059020 AT1G11820.2 33.488 430 269 7 27 453 45 460 9.52e-83 265
Msa1059020 AT2G27500.2 38.298 329 198 4 27 354 30 354 5.08e-82 259
Msa1059020 AT2G27500.1 38.298 329 198 4 27 354 30 354 1.67e-81 258
Msa1059020 AT1G30080.2 39.650 343 201 5 5 346 15 352 4.73e-81 256
Msa1059020 AT1G30080.1 39.650 343 201 5 5 346 15 352 8.11e-81 257
Msa1059020 AT5G42720.1 40.608 362 204 7 2 361 7 359 1.63e-80 257
Msa1059020 AT5G24318.4 39.714 350 201 6 1 348 5 346 2.36e-80 254
Msa1059020 AT1G32860.1 40.187 321 188 4 27 346 30 347 6.66e-80 255
Msa1059020 AT2G26600.1 35.569 343 213 5 21 359 29 367 6.32e-76 243
Msa1059020 AT3G57270.1 39.939 328 183 7 23 348 24 339 6.48e-76 242
Msa1059020 AT4G34480.2 38.611 360 210 7 1 356 1 353 3.93e-75 240
Msa1059020 AT2G39640.1 35.541 453 264 14 4 452 8 436 1.20e-74 245
Msa1059020 AT5G42100.2 39.329 328 192 6 24 348 25 348 1.45e-74 241
Msa1059020 AT5G42100.1 39.329 328 192 6 24 348 25 348 2.20e-74 241
Msa1059020 AT3G61810.1 37.805 328 188 5 27 349 56 372 2.69e-73 236
Msa1059020 AT2G01630.2 35.526 380 228 7 27 403 24 389 2.54e-72 234
Msa1059020 AT4G16260.1 37.243 341 191 11 3 339 4 325 3.54e-67 219
Msa1059020 AT5G24318.3 39.145 304 177 4 149 452 15 310 1.82e-66 216
Msa1059020 AT4G34480.3 37.681 345 192 7 114 452 3 330 7.38e-66 217
Msa1059020 AT3G46570.1 37.209 344 204 8 8 348 10 344 8.16e-65 213
Msa1059020 AT1G33220.1 37.048 332 193 9 3 330 8 327 2.66e-64 211
Msa1059020 AT5G20340.1 37.578 322 187 9 27 346 44 353 7.10e-64 211
Msa1059020 AT5G20330.1 37.059 340 198 9 3 338 8 335 7.83e-64 211
Msa1059020 AT2G27500.3 37.634 279 169 4 77 354 2 276 9.86e-64 209
Msa1059020 AT5G20390.1 37.202 336 197 9 4 338 12 334 1.76e-63 209
Msa1059020 AT4G16260.2 37.217 309 178 9 33 339 2 296 5.17e-62 205
Msa1059020 AT3G57260.1 33.815 346 211 8 4 349 12 339 2.38e-61 204
Msa1059020 AT3G57260.2 34.104 346 210 8 4 349 28 355 3.99e-61 204
Msa1059020 AT2G26600.2 36.823 277 167 5 87 359 1 273 9.55e-61 201
Msa1059020 AT1G11820.1 33.333 327 211 5 27 350 45 367 8.44e-60 201
Msa1059020 AT1G77780.1 33.721 344 216 7 3 346 1 332 7.09e-59 198
Msa1059020 AT3G24330.1 29.694 458 297 15 5 453 18 459 8.25e-57 196
Msa1059020 AT3G57240.1 34.494 316 188 8 25 339 34 331 5.12e-56 190
Msa1059020 AT3G55780.1 33.333 315 196 8 40 349 49 354 1.25e-51 179
Msa1059020 AT4G31140.1 27.802 464 295 19 27 477 28 464 9.42e-51 180
Msa1059020 AT5G20560.1 35.965 342 200 11 3 338 8 336 4.82e-50 174
Msa1059020 AT1G77790.1 31.562 320 210 5 27 346 31 341 1.65e-49 173
Msa1059020 AT4G17180.1 30.617 454 280 18 6 452 9 434 5.23e-47 169
Msa1059020 AT5G18220.1 28.761 452 287 18 16 453 20 450 4.57e-46 167
Msa1059020 AT5G20870.1 30.206 437 269 19 32 452 37 453 1.65e-45 166
Msa1059020 AT5G58090.1 28.636 440 285 17 23 452 19 439 2.84e-42 157
Msa1059020 AT3G04010.1 27.790 457 294 19 11 453 18 452 6.10e-42 156
Msa1059020 AT5G58480.1 27.273 440 280 16 27 453 27 439 1.31e-41 155
Msa1059020 AT5G64790.1 26.316 437 291 15 27 452 29 445 8.90e-41 152
Msa1059020 AT2G19440.2 27.918 437 286 19 27 453 22 439 3.58e-38 145
Msa1059020 AT2G19440.1 27.918 437 286 19 27 453 22 439 3.58e-38 145
Msa1059020 AT1G64760.1 27.397 438 287 20 27 453 26 443 5.64e-37 142
Msa1059020 AT1G64760.2 27.397 438 287 20 27 453 26 443 5.64e-37 142
Msa1059020 AT5G67460.2 42.268 97 52 1 362 454 277 373 1.11e-18 88.2
Msa1059020 AT5G67460.1 42.105 95 51 1 362 452 277 371 5.72e-18 85.9
Msa1059020 AT5G35740.1 37.895 95 57 2 359 452 16 109 1.54e-14 70.5
Msa1059020 AT4G05430.2 36.275 102 60 2 353 453 30 127 7.63e-14 68.6
Msa1059020 AT2G04910.2 39.241 79 48 0 374 452 15 93 9.87e-14 67.8
Msa1059020 AT2G30933.2 39.362 94 55 2 360 452 67 159 2.53e-13 68.2
Msa1059020 AT2G30933.3 39.362 94 55 2 360 452 67 159 2.53e-13 68.2
Msa1059020 AT4G05430.1 35.644 101 60 2 353 452 5 101 2.71e-13 67.8
Msa1059020 AT2G04910.1 40.000 80 48 0 374 453 15 94 2.81e-13 67.0
Msa1059020 AT1G79480.1 40.506 79 46 1 374 452 311 388 4.00e-13 71.2
Msa1059020 AT1G79480.2 40.506 79 46 1 374 452 310 387 4.36e-13 71.2
Msa1059020 AT4G13600.1 45.000 80 43 1 373 452 60 138 1.18e-12 67.8
Msa1059020 AT2G30933.1 39.362 94 55 2 360 452 67 159 2.17e-12 67.0
Msa1059020 AT5G61130.1 40.506 79 46 1 374 452 21 98 3.79e-12 65.9
Msa1059020 AT1G29380.4 41.250 80 46 1 374 453 148 226 4.83e-12 66.2
Msa1059020 AT1G29380.2 41.250 80 46 1 374 453 148 226 4.83e-12 66.2
Msa1059020 AT1G29380.1 41.250 80 46 1 374 453 148 226 6.33e-12 67.0
Msa1059020 AT4G05430.3 35.644 101 60 2 353 452 30 126 6.50e-12 64.3
Msa1059020 AT1G29380.3 41.250 80 46 1 374 453 148 226 8.35e-12 65.9
Msa1059020 AT4G09462.1 35.632 87 55 1 366 452 21 106 1.10e-11 62.0
Msa1059020 AT2G29735.1 36.471 85 51 2 370 452 27 110 1.31e-11 62.0
Msa1059020 AT5G63250.1 32.000 100 62 2 355 452 27 122 1.68e-11 62.0
Msa1059020 AT5G63225.1 35.443 79 50 1 374 452 25 102 2.06e-11 61.2
Msa1059020 AT5G63230.1 33.750 80 52 1 374 453 26 104 3.89e-11 60.5
Msa1059020 AT1G66870.1 31.707 82 56 0 371 452 23 104 5.74e-11 60.1
Msa1059020 AT4G09465.1 35.802 81 51 1 372 452 29 108 9.29e-11 59.7
Msa1059020 AT4G09464.1 35.802 81 51 1 372 452 29 108 9.95e-11 59.7
Msa1059020 AT4G09467.1 35.802 81 51 1 372 452 29 108 9.95e-11 59.7

Find 160 sgRNAs with CRISPR-Local

Find 223 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATGTAAGTTCCTCCTTTA+TGG 0.072871 7_2:-44357909 None:intergenic
TTTGATGCGCTTTGCGTTTA+AGG 0.094987 7_2:-44355772 None:intergenic
CTTACATTGATGAATGATTT+TGG 0.141835 7_2:+44357923 Msa1059020:three_prime_UTR
TATAACAGGAAATTTAAATT+TGG 0.195700 7_2:+44357815 Msa1059020:three_prime_UTR
CGACCCGGTTAATGTTAATT+TGG 0.198547 7_2:+44356250 Msa1059020:CDS
GGAGGAACTTGTTACTTTAA+TGG 0.216813 7_2:+44356929 Msa1059020:CDS
GTTTATGACATTGATCTTTC+GGG 0.227881 7_2:+44356653 Msa1059020:CDS
CAACAAGGAGGTAACGGATT+AGG 0.244733 7_2:-44355953 None:intergenic
ATTAGGGTTTGTGGGTAATA+AGG 0.261206 7_2:-44355936 None:intergenic
CACCAAATCTTCCCTTTATA+CGG 0.266249 7_2:-44356728 None:intergenic
GCTATGCGTTTAGTTCTTAT+TGG 0.266539 7_2:+44356888 Msa1059020:CDS
GGTTTATGACATTGATCTTT+CGG 0.279871 7_2:+44356652 Msa1059020:CDS
TACGGTTAAGGATCCGGGTT+CGG 0.285504 7_2:+44356301 Msa1059020:CDS
AATGTAAGTTCCTCCTTTAT+GGG 0.288864 7_2:-44357908 None:intergenic
GAGGAGACTAATCATGAAAA+TGG 0.297191 7_2:+44357748 Msa1059020:CDS
TAAGGATCCGGGTTCGGGTT+TGG 0.304227 7_2:+44356307 Msa1059020:CDS
TTAATTGACATTTCTATAAC+AGG 0.304306 7_2:+44357801 Msa1059020:three_prime_UTR
TAATCCAAATTAACATTAAC+CGG 0.304337 7_2:-44356254 None:intergenic
TTTAAGGTTGTTAGGATTTG+TGG 0.304363 7_2:-44355810 None:intergenic
ACGGTTAAGGATCCGGGTTC+GGG 0.304864 7_2:+44356302 Msa1059020:CDS
AATGGAGAAACTTGGGTTTC+CGG 0.309222 7_2:+44356376 Msa1059020:CDS
AACAAGGAGGTAACGGATTA+GGG 0.311031 7_2:-44355952 None:intergenic
TGTTGTATCCGAACGGGTCT+AGG 0.311397 7_2:+44356630 Msa1059020:CDS
GAGAATAATGAGCCGTATAA+AGG 0.317476 7_2:+44356716 Msa1059020:CDS
GAGGAACTTGTTACTTTAAT+GGG 0.318934 7_2:+44356930 Msa1059020:CDS
ATTATTTGACATCATGATAC+TGG 0.330834 7_2:+44357969 Msa1059020:three_prime_UTR
TTGCAACACTTGGATTCCTT+TGG 0.348221 7_2:+44358111 Msa1059020:three_prime_UTR
CGGATATTTATCGCGGAAAC+GGG 0.349889 7_2:+44356404 Msa1059020:CDS
TGGGCACAGTTTAAGAAGAT+TGG 0.350746 7_2:+44356908 Msa1059020:CDS
AGCATCATGATGTGAAATAA+TGG 0.359560 7_2:-44358023 None:intergenic
CTATGCGTTTAGTTCTTATT+GGG 0.362480 7_2:+44356889 Msa1059020:CDS
TCCATTGGTCGGAGAGGGTT+TGG 0.366090 7_2:-44355896 None:intergenic
CTAATCCGTTACCTCCTTGT+TGG 0.380083 7_2:+44355954 Msa1059020:CDS
TGTTGGGACACCGGCTCGAC+CGG 0.385430 7_2:+44356526 Msa1059020:CDS
AGTTGACCGTAGCAGATTCC+TGG 0.387463 7_2:-44355702 None:intergenic
TGCGTTTAAGGATTTGATTA+AGG 0.388788 7_2:-44355760 None:intergenic
TTAAGGTTGTTAGGATTTGT+GGG 0.390167 7_2:-44355809 None:intergenic
AGCCGTATAAAGGGAAGATT+TGG 0.394135 7_2:+44356726 Msa1059020:CDS
AACTTGGGTTTCCGGATGTT+CGG 0.396533 7_2:+44356384 Msa1059020:CDS
AGTATCATGATGTCAAATAA+TGG 0.398264 7_2:-44357967 None:intergenic
GCGGAAACGGGTTGGCCTAA+TGG 0.398444 7_2:+44356416 Msa1059020:CDS
AGAGAGTAATGTTACGGTTA+AGG 0.398626 7_2:+44356289 Msa1059020:CDS
ATGCTTGCTCGCAGGGGAAC+CGG 0.399988 7_2:+44356801 Msa1059020:CDS
GTTTAATGAGAATATTAAAC+CGG 0.401130 7_2:+44356580 Msa1059020:CDS
AGATGAGGCCACGTGGAGTT+TGG 0.401768 7_2:-44355999 None:intergenic
ACACTTGGATTCCTTTGGAT+TGG 0.402773 7_2:+44358116 Msa1059020:three_prime_UTR
GGCGGTGATGTTGATCAAAT+TGG 0.403208 7_2:+44356437 Msa1059020:CDS
TAATGTTACGGTTAAGGATC+CGG 0.405432 7_2:+44356295 Msa1059020:CDS
AGATGGATGGATCCTGGAAA+TGG 0.405663 7_2:-44355301 None:intergenic
ACACAACACAACCCATTTCC+AGG 0.413447 7_2:+44355289 Msa1059020:five_prime_UTR
TGAGAATATTAAACCGGGTC+CGG 0.418152 7_2:+44356586 Msa1059020:CDS
TCGGATATTTATCGCGGAAA+CGG 0.419442 7_2:+44356403 Msa1059020:CDS
TAGTAACATTCAACCCATAA+AGG 0.420864 7_2:+44357895 Msa1059020:three_prime_UTR
ATGTTTGTGATGAGTTCGTT+TGG 0.429565 7_2:-44355864 None:intergenic
GGGAGTAATGTGACGGCACT+AGG 0.433307 7_2:+44356764 Msa1059020:CDS
TTGGGTTGTTGTATCCGAAC+GGG 0.438048 7_2:+44356624 Msa1059020:CDS
TGAAATGTTGTTGAGTAGAA+TGG 0.438583 7_2:-44355522 None:intergenic
TACGAATTTATTTGATCAGA+TGG 0.440268 7_2:+44356334 Msa1059020:CDS
TATACGGCTCATTATTCTCC+GGG 0.445261 7_2:-44356712 None:intergenic
AGTTGGTACTTCTTCTGCTA+TGG 0.450725 7_2:+44356082 Msa1059020:CDS
TTATACGGCTCATTATTCTC+CGG 0.453845 7_2:-44356713 None:intergenic
TTACGAAACGCAGCGTTTGA+AGG 0.455167 7_2:-44356128 None:intergenic
AAGTTATTAAACCGATGCTT+AGG 0.456379 7_2:+44356165 Msa1059020:CDS
AGAATAATGAGCCGTATAAA+GGG 0.458773 7_2:+44356717 Msa1059020:CDS
TATTTATTTATTGCAACACT+TGG 0.463119 7_2:+44358101 Msa1059020:three_prime_UTR
TCAATTAATGAATGATTCAA+TGG 0.467728 7_2:-44357786 None:intergenic
TGTTTGTGATGAGTTCGTTT+GGG 0.471998 7_2:-44355863 None:intergenic
AGAAGATTGAGATGAGACTA+TGG 0.473878 7_2:-44355261 None:intergenic
CGAGCCGGTGTCCCAACAAC+CGG 0.475288 7_2:-44356521 None:intergenic
TATTAAACCGGGTCCGGGTA+CGG 0.476797 7_2:+44356592 Msa1059020:CDS
AGTAGGAGATGGATGGATCC+TGG 0.478674 7_2:-44355307 None:intergenic
TTCCAAGTGTGACACTTTGA+AGG 0.487564 7_2:+44357726 Msa1059020:CDS
ACTATGGTGGTTTGATAAAG+TGG 0.487735 7_2:-44355245 None:intergenic
CTCCTTCAAAGTGTCACACT+TGG 0.488468 7_2:-44357728 None:intergenic
GTTTAGAGAGAGTAATGTTA+CGG 0.488551 7_2:+44356283 Msa1059020:CDS
ATAAAAGATAAAGTAGGAGA+TGG 0.491479 7_2:-44355318 None:intergenic
GTAGAATGGAGAAGAGAAAG+AGG 0.501465 7_2:-44355508 None:intergenic
AGTGCCGAAAACTCTGACTC+CGG 0.502962 7_2:-44356683 None:intergenic
GGGGAACCGGACTTGTGATC+CGG 0.503868 7_2:+44356814 Msa1059020:CDS
GAACGTTGGATTTGATCCAT+TGG 0.505085 7_2:-44355911 None:intergenic
CGAAACGCAGCGTTTGAAGG+TGG 0.507919 7_2:-44356125 None:intergenic
TTTGATCCATTGGTCGGAGA+GGG 0.508250 7_2:-44355901 None:intergenic
CCAAAATGTCGCTCCGTACC+CGG 0.509958 7_2:-44356605 None:intergenic
ATTTGGTGTGTGGCGGTGCG+TGG 0.510143 7_2:+44356743 Msa1059020:CDS
GAGAATATTAAACCGGGTCC+GGG 0.512487 7_2:+44356587 Msa1059020:CDS
CTTTCAGAAGTTGTGCTATG+TGG 0.514761 7_2:-44355443 None:intergenic
TGATCAACATCACCGCCATT+AGG 0.517516 7_2:-44356431 None:intergenic
GCGATAAATATCCGAACATC+CGG 0.517870 7_2:-44356395 None:intergenic
CGTTTCCAACAAGGAGGTAA+CGG 0.518121 7_2:-44355959 None:intergenic
GATGGATGGATCCTGGAAAT+GGG 0.518644 7_2:-44355300 None:intergenic
TTGACGTATGCTTGCTCGCA+GGG 0.519727 7_2:+44356794 Msa1059020:CDS
TTTGGGTTGTTGTATCCGAA+CGG 0.520952 7_2:+44356623 Msa1059020:CDS
AGGTAACGGATTAGGGTTTG+TGG 0.521382 7_2:-44355945 None:intergenic
GGGAAGATAAAAGATAAAGT+AGG 0.522781 7_2:-44355324 None:intergenic
AATGTTACGGTTAAGGATCC+GGG 0.524550 7_2:+44356296 Msa1059020:CDS
ATTTGATCAGATGGTGGATG+CGG 0.528077 7_2:+44356343 Msa1059020:CDS
GTTGTATCCGAACGGGTCTA+GGG 0.530355 7_2:+44356631 Msa1059020:CDS
GCACAGTTTAAGAAGATTGG+AGG 0.533437 7_2:+44356911 Msa1059020:CDS
GGAATCTGCTACGGTCAACT+AGG 0.534218 7_2:+44355705 Msa1059020:CDS
AGAATCAAAAGAATCAAAGT+TGG 0.535473 7_2:+44356065 Msa1059020:CDS
AGAATTGAACCCGGTCGAGC+CGG 0.535734 7_2:-44356536 None:intergenic
GGTAACGGATTAGGGTTTGT+GGG 0.538137 7_2:-44355944 None:intergenic
ATGGGTTGAATGTTACTAGA+GGG 0.544294 7_2:-44357890 None:intergenic
TGTTTGATTCTACGCATCGC+AGG 0.546557 7_2:-44356026 None:intergenic
TGGGTAATAAGGTAGAACGT+TGG 0.547510 7_2:-44355925 None:intergenic
TATTTATCGCGGAAACGGGT+TGG 0.547640 7_2:+44356408 Msa1059020:CDS
CTATGGTGGTTTGATAAAGT+GGG 0.549418 7_2:-44355244 None:intergenic
AAGATAAAGTAGGAGATGGA+TGG 0.552956 7_2:-44355314 None:intergenic
GTTGGGACACCGGCTCGACC+GGG 0.553539 7_2:+44356527 Msa1059020:CDS
GCTTTCATTTCATCAATGTG+AGG 0.554721 7_2:+44357863 Msa1059020:three_prime_UTR
TGTCGCTCCGTACCCGGACC+CGG 0.554877 7_2:-44356599 None:intergenic
GGAGTAATGTGACGGCACTA+GGG 0.555095 7_2:+44356765 Msa1059020:CDS
TCATAAACCCTAGACCCGTT+CGG 0.556211 7_2:-44356638 None:intergenic
ACCAAACCCTCTCCGACCAA+TGG 0.556784 7_2:+44355895 Msa1059020:CDS
ACTTGTGATCCGGTTCAACC+CGG 0.561213 7_2:+44356824 Msa1059020:CDS
ATTGACGTATGCTTGCTCGC+AGG 0.564347 7_2:+44356793 Msa1059020:CDS
TTTGGTGTGTGGCGGTGCGT+GGG 0.564836 7_2:+44356744 Msa1059020:CDS
AAAACCGGTTGTTGGGACAC+CGG 0.566975 7_2:+44356517 Msa1059020:CDS
GTTGGATTTGATCCATTGGT+CGG 0.568173 7_2:-44355907 None:intergenic
GTTTGATTCTACGCATCGCA+GGG 0.568728 7_2:-44356025 None:intergenic
CAAGTGTGACACTTTGAAGG+AGG 0.572437 7_2:+44357729 Msa1059020:CDS
GTTGAACCGGATCACAAGTC+CGG 0.573766 7_2:-44356820 None:intergenic
GTATAAACCAAACCCGAACC+CGG 0.574382 7_2:-44356314 None:intergenic
GAATTTATTTGATCAGATGG+TGG 0.583307 7_2:+44356337 Msa1059020:CDS
TGGGTTGAATGTTACTAGAG+GGG 0.584583 7_2:-44357889 None:intergenic
AGATGATTTCGTTTCCAACA+AGG 0.584918 7_2:-44355968 None:intergenic
TTTGGATACTTGCATAGCAA+CGG 0.588165 7_2:+44357941 Msa1059020:three_prime_UTR
GGGTTGAATGTTACTAGAGG+GGG 0.591484 7_2:-44357888 None:intergenic
GAGTAATGTGACGGCACTAG+GGG 0.602111 7_2:+44356766 Msa1059020:CDS
CGCATCGCAGGGACGAGATG+AGG 0.602336 7_2:-44356014 None:intergenic
CTTGTGATCCGGTTCAACCC+GGG 0.606763 7_2:+44356825 Msa1059020:CDS
TGATCTTTCGGGGAAGACAC+CGG 0.616209 7_2:+44356664 Msa1059020:CDS
ATTTGATCCATTGGTCGGAG+AGG 0.616370 7_2:-44355902 None:intergenic
TATGGGTTGAATGTTACTAG+AGG 0.616381 7_2:-44357891 None:intergenic
TAATGTGACGGCACTAGGGG+AGG 0.621819 7_2:+44356769 Msa1059020:CDS
CAAATTAACATTAACCGGGT+CGG 0.622515 7_2:-44356249 None:intergenic
TTTAATGAGAATATTAAACC+GGG 0.624692 7_2:+44356581 Msa1059020:CDS
AGGCCACGTGGAGTTTGGTG+TGG 0.627760 7_2:-44355994 None:intergenic
TCACAACCAGGAATCTGCTA+CGG 0.630316 7_2:+44355696 Msa1059020:CDS
TAAAGGGAAGATTTGGTGTG+TGG 0.635044 7_2:+44356733 Msa1059020:CDS
GCTTGCTACTCAAACTGCAA+AGG 0.636317 7_2:+44356952 Msa1059020:CDS
AGATTGAGATGAGACTATGG+TGG 0.639702 7_2:-44355258 None:intergenic
ATTAATGAATGATTCAATGG+AGG 0.642062 7_2:-44357783 None:intergenic
ATACGGCTCATTATTCTCCG+GGG 0.645645 7_2:-44356711 None:intergenic
TGATTTCGTTTCCAACAAGG+AGG 0.653991 7_2:-44355965 None:intergenic
TTAACCGGGTCGGAGCTCCA+AGG 0.655245 7_2:-44356239 None:intergenic
TGCGTTTCGTAAAGATATAG+CGG 0.657744 7_2:+44356139 Msa1059020:CDS
TATTGTGCGAGCCAATCCAA+AGG 0.657936 7_2:-44358127 None:intergenic
TAACATTCAACCCATAAAGG+AGG 0.662901 7_2:+44357898 Msa1059020:three_prime_UTR
AATCCAAATTAACATTAACC+GGG 0.666875 7_2:-44356253 None:intergenic
TGACGTATGCTTGCTCGCAG+GGG 0.669740 7_2:+44356795 Msa1059020:CDS
GGATGTTCGGATATTTATCG+CGG 0.670356 7_2:+44356397 Msa1059020:CDS
TTTATGACATTGATCTTTCG+GGG 0.677934 7_2:+44356654 Msa1059020:CDS
GAAACGGGTTGGCCTAATGG+CGG 0.678464 7_2:+44356419 Msa1059020:CDS
AACAGAGTATCAAACACACA+TGG 0.688027 7_2:+44355420 Msa1059020:five_prime_UTR
CATCCACACCAAACTCCACG+TGG 0.689929 7_2:+44355991 Msa1059020:CDS
GGTGCGTGGGAGTAATGTGA+CGG 0.690661 7_2:+44356757 Msa1059020:CDS
AGGGAAGATTTGGTGTGTGG+CGG 0.713466 7_2:+44356736 Msa1059020:CDS
AAACTCGGAAGAATTGAACC+CGG 0.734982 7_2:-44356545 None:intergenic
AGGGACGAGATGAGGCCACG+TGG 0.756781 7_2:-44356006 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAGTTGTTTATTTTTTT+GGG - chr7_2:44355348-44355367 None:intergenic 10.0%
!!! ATTTTCATTTTATATAAGAA+AGG + chr7_2:44357114-44357133 Msa1059020:intron 10.0%
!!! ATTTTCATTTTATATAAGAA+AGG + chr7_2:44357114-44357133 Msa1059020:intron 10.0%
!!! AAAAGTTGTTTATTTTTTTG+GGG - chr7_2:44355347-44355366 None:intergenic 15.0%
!!! GAAAAAGTTGTTTATTTTTT+TGG - chr7_2:44355349-44355368 None:intergenic 15.0%
!! TAAAAAAGTTATGAAAAAAC+CGG + chr7_2:44356502-44356521 Msa1059020:CDS 15.0%
!!! AGTACTTCAATTTAATTTAA+TGG - chr7_2:44357518-44357537 None:intergenic 15.0%
!! AAAATAAAAATGTTAAGTGA+TGG - chr7_2:44357666-44357685 None:intergenic 15.0%
!! TATAACAGGAAATTTAAATT+TGG + chr7_2:44357815-44357834 Msa1059020:three_prime_UTR 15.0%
!! AAAAACAGCAAAAACAAAAA+TGG + chr7_2:44355475-44355494 Msa1059020:exon 20.0%
!! TTCTTATTAATATACTTCAC+AGG + chr7_2:44355657-44355676 Msa1059020:intron 20.0%
!!! TTGAATGTTTGTGTTTTTTA+AGG - chr7_2:44355829-44355848 None:intergenic 20.0%
!! AAAAGAAAAAAGATTTAGTC+CGG - chr7_2:44356199-44356218 None:intergenic 20.0%
!! TAATCCAAATTAACATTAAC+CGG - chr7_2:44356257-44356276 None:intergenic 20.0%
!! AACAAAGCAAATAAAAAACT+CGG - chr7_2:44356563-44356582 None:intergenic 20.0%
!! GTTTAATGAGAATATTAAAC+CGG + chr7_2:44356580-44356599 Msa1059020:CDS 20.0%
!! TTTAATGAGAATATTAAACC+GGG + chr7_2:44356581-44356600 Msa1059020:CDS 20.0%
!! AAATAAAAAACGTACTTACT+TGG - chr7_2:44356980-44356999 None:intergenic 20.0%
!!! GTTTTTCAACAAAAAATTGT+TGG + chr7_2:44357140-44357159 Msa1059020:intron 20.0%
!!! GTACTCACAATTTAATTTAA+TGG - chr7_2:44357258-44357277 None:intergenic 20.0%
!!! GTTTTTCAACAAAAAATTGT+TGG + chr7_2:44357140-44357159 Msa1059020:intron 20.0%
!!! GTAGTTAAGTTTAATTTAAC+TGG - chr7_2:44357564-44357583 None:intergenic 20.0%
!! TCAATTAATGAATGATTCAA+TGG - chr7_2:44357789-44357808 None:intergenic 20.0%
!! TTAATTGACATTTCTATAAC+AGG + chr7_2:44357801-44357820 Msa1059020:three_prime_UTR 20.0%
!! TATTTATTTATTGCAACACT+TGG + chr7_2:44358101-44358120 Msa1059020:three_prime_UTR 20.0%
! ATAAAAGATAAAGTAGGAGA+TGG - chr7_2:44355321-44355340 None:intergenic 25.0%
!! CTACTTTCTATTTTCAATGT+TGG - chr7_2:44355399-44355418 None:intergenic 25.0%
!!! TTGTGTTTTTTAAGGTTGTT+AGG - chr7_2:44355821-44355840 None:intergenic 25.0%
! AGAATCAAAAGAATCAAAGT+TGG + chr7_2:44356065-44356084 Msa1059020:CDS 25.0%
! AATCCAAATTAACATTAACC+GGG - chr7_2:44356256-44356275 None:intergenic 25.0%
! TACGAATTTATTTGATCAGA+TGG + chr7_2:44356334-44356353 Msa1059020:CDS 25.0%
! AAACATAACTCACAATTAGA+GGG - chr7_2:44357035-44357054 None:intergenic 25.0%
! TAAACATAACTCACAATTAG+AGG - chr7_2:44357036-44357055 None:intergenic 25.0%
! AAACATAACTCACAATTAGA+GGG - chr7_2:44357035-44357054 None:intergenic 25.0%
! TAAACATAACTCACAATTAG+AGG - chr7_2:44357036-44357055 None:intergenic 25.0%
!!! AGTGATGGACAAATATAATA+AGG - chr7_2:44357651-44357670 None:intergenic 25.0%
! ATTAATGAATGATTCAATGG+AGG - chr7_2:44357786-44357805 None:intergenic 25.0%
!! CTTACATTGATGAATGATTT+TGG + chr7_2:44357923-44357942 Msa1059020:three_prime_UTR 25.0%
! AGTATCATGATGTCAAATAA+TGG - chr7_2:44357970-44357989 None:intergenic 25.0%
! ATTATTTGACATCATGATAC+TGG + chr7_2:44357969-44357988 Msa1059020:three_prime_UTR 25.0%
GGGAAGATAAAAGATAAAGT+AGG - chr7_2:44355327-44355346 None:intergenic 30.0%
!!! CTATTTTCAATGTTGGTGAT+GGG - chr7_2:44355392-44355411 None:intergenic 30.0%
!! TCTATTTTCAATGTTGGTGA+TGG - chr7_2:44355393-44355412 None:intergenic 30.0%
TGAAATGTTGTTGAGTAGAA+TGG - chr7_2:44355525-44355544 None:intergenic 30.0%
! ATTAAGGAGAGTGATTTTGA+GGG - chr7_2:44355747-44355766 None:intergenic 30.0%
TGCGTTTAAGGATTTGATTA+AGG - chr7_2:44355763-44355782 None:intergenic 30.0%
TTAAGGTTGTTAGGATTTGT+GGG - chr7_2:44355812-44355831 None:intergenic 30.0%
! TTTAAGGTTGTTAGGATTTG+TGG - chr7_2:44355813-44355832 None:intergenic 30.0%
AAGTTATTAAACCGATGCTT+AGG + chr7_2:44356165-44356184 Msa1059020:CDS 30.0%
GTTTAGAGAGAGTAATGTTA+CGG + chr7_2:44356283-44356302 Msa1059020:CDS 30.0%
GAATTTATTTGATCAGATGG+TGG + chr7_2:44356337-44356356 Msa1059020:CDS 30.0%
! TATTTTGCAATGGAGAAACT+TGG + chr7_2:44356368-44356387 Msa1059020:CDS 30.0%
! ATTTTGCAATGGAGAAACTT+GGG + chr7_2:44356369-44356388 Msa1059020:CDS 30.0%
TTATGAAAAAACCGGTTGTT+GGG + chr7_2:44356510-44356529 Msa1059020:CDS 30.0%
GGTTTATGACATTGATCTTT+CGG + chr7_2:44356652-44356671 Msa1059020:CDS 30.0%
GTTTATGACATTGATCTTTC+GGG + chr7_2:44356653-44356672 Msa1059020:CDS 30.0%
TTTATGACATTGATCTTTCG+GGG + chr7_2:44356654-44356673 Msa1059020:CDS 30.0%
AGAATAATGAGCCGTATAAA+GGG + chr7_2:44356717-44356736 Msa1059020:CDS 30.0%
!! AAAGTGTTTTAAACCCGAAT+CGG + chr7_2:44356850-44356869 Msa1059020:CDS 30.0%
!! CTATGCGTTTAGTTCTTATT+GGG + chr7_2:44356889-44356908 Msa1059020:CDS 30.0%
!! GAGGAACTTGTTACTTTAAT+GGG + chr7_2:44356930-44356949 Msa1059020:CDS 30.0%
CTTAGTATTGTTCCACATAA+TGG + chr7_2:44357171-44357190 Msa1059020:intron 30.0%
GACATTTAACATCCATTATG+TGG - chr7_2:44357186-44357205 None:intergenic 30.0%
CTTAGTATTGTTCCACATAA+TGG + chr7_2:44357171-44357190 Msa1059020:intron 30.0%
GACATTTAACATCCATTATG+TGG - chr7_2:44357186-44357205 None:intergenic 30.0%
!!! CTCTTTTTTTGAACATGTGT+AGG + chr7_2:44357686-44357705 Msa1059020:intron 30.0%
! TTTTGAACATGTGTAGGTTA+TGG + chr7_2:44357692-44357711 Msa1059020:intron 30.0%
TAGTAACATTCAACCCATAA+AGG + chr7_2:44357895-44357914 Msa1059020:three_prime_UTR 30.0%
AATGTAAGTTCCTCCTTTAT+GGG - chr7_2:44357911-44357930 None:intergenic 30.0%
AGCATCATGATGTGAAATAA+TGG - chr7_2:44358026-44358045 None:intergenic 30.0%
CTATGGTGGTTTGATAAAGT+GGG - chr7_2:44355247-44355266 None:intergenic 35.0%
ACTATGGTGGTTTGATAAAG+TGG - chr7_2:44355248-44355267 None:intergenic 35.0%
AGAAGATTGAGATGAGACTA+TGG - chr7_2:44355264-44355283 None:intergenic 35.0%
AAGATAAAGTAGGAGATGGA+TGG - chr7_2:44355317-44355336 None:intergenic 35.0%
! AACAGAGTATCAAACACACA+TGG + chr7_2:44355420-44355439 Msa1059020:five_prime_UTR 35.0%
TTTCTTCAATCTCATCTCTC+TGG + chr7_2:44355569-44355588 Msa1059020:intron 35.0%
TTCTTCAATCTCATCTCTCT+GGG + chr7_2:44355570-44355589 Msa1059020:intron 35.0%
! GATTAAGGAGAGTGATTTTG+AGG - chr7_2:44355748-44355767 None:intergenic 35.0%
TGTTTGTGATGAGTTCGTTT+GGG - chr7_2:44355866-44355885 None:intergenic 35.0%
ATGTTTGTGATGAGTTCGTT+TGG - chr7_2:44355867-44355886 None:intergenic 35.0%
ATTAGGGTTTGTGGGTAATA+AGG - chr7_2:44355939-44355958 None:intergenic 35.0%
AGATGATTTCGTTTCCAACA+AGG - chr7_2:44355971-44355990 None:intergenic 35.0%
TGCGTTTCGTAAAGATATAG+CGG + chr7_2:44356139-44356158 Msa1059020:CDS 35.0%
CGGTTTAAAAACCTAAGCAT+CGG - chr7_2:44356179-44356198 None:intergenic 35.0%
! CGATGCTTAGGTTTTTAAAC+CGG + chr7_2:44356177-44356196 Msa1059020:CDS 35.0%
!!! ATGTTTACCCGTTTTTTCCT+TGG + chr7_2:44356222-44356241 Msa1059020:CDS 35.0%
CAAATTAACATTAACCGGGT+CGG - chr7_2:44356252-44356271 None:intergenic 35.0%
AGAGAGTAATGTTACGGTTA+AGG + chr7_2:44356289-44356308 Msa1059020:CDS 35.0%
TAATGTTACGGTTAAGGATC+CGG + chr7_2:44356295-44356314 Msa1059020:CDS 35.0%
GTTATGAAAAAACCGGTTGT+TGG + chr7_2:44356509-44356528 Msa1059020:CDS 35.0%
TTATACGGCTCATTATTCTC+CGG - chr7_2:44356716-44356735 None:intergenic 35.0%
GAGAATAATGAGCCGTATAA+AGG + chr7_2:44356716-44356735 Msa1059020:CDS 35.0%
CACCAAATCTTCCCTTTATA+CGG - chr7_2:44356731-44356750 None:intergenic 35.0%
!!! GGTTTAAAACACTTTTTCCC+GGG - chr7_2:44356845-44356864 None:intergenic 35.0%
!!! GGGTTTAAAACACTTTTTCC+CGG - chr7_2:44356846-44356865 None:intergenic 35.0%
!!! TTAAACCCGAATCGGTTTTT+TGG + chr7_2:44356858-44356877 Msa1059020:CDS 35.0%
!! GCTATGCGTTTAGTTCTTAT+TGG + chr7_2:44356888-44356907 Msa1059020:CDS 35.0%
!! GGAGGAACTTGTTACTTTAA+TGG + chr7_2:44356929-44356948 Msa1059020:CDS 35.0%
GAGGAGACTAATCATGAAAA+TGG + chr7_2:44357748-44357767 Msa1059020:CDS 35.0%
GCTTTCATTTCATCAATGTG+AGG + chr7_2:44357863-44357882 Msa1059020:three_prime_UTR 35.0%
! ATGGGTTGAATGTTACTAGA+GGG - chr7_2:44357893-44357912 None:intergenic 35.0%
! TATGGGTTGAATGTTACTAG+AGG - chr7_2:44357894-44357913 None:intergenic 35.0%
TAACATTCAACCCATAAAGG+AGG + chr7_2:44357898-44357917 Msa1059020:three_prime_UTR 35.0%
CAATGTAAGTTCCTCCTTTA+TGG - chr7_2:44357912-44357931 None:intergenic 35.0%
TTTGGATACTTGCATAGCAA+CGG + chr7_2:44357941-44357960 Msa1059020:three_prime_UTR 35.0%
AGATTGAGATGAGACTATGG+TGG - chr7_2:44355261-44355280 None:intergenic 40.0%
CTTTCAGAAGTTGTGCTATG+TGG - chr7_2:44355446-44355465 None:intergenic 40.0%
GTAGAATGGAGAAGAGAAAG+AGG - chr7_2:44355511-44355530 None:intergenic 40.0%
!!! TCAGCTTTTTCATCACAACC+AGG + chr7_2:44355684-44355703 Msa1059020:CDS 40.0%
!! GTGATTTTGAGGGTTTTGGT+AGG - chr7_2:44355737-44355756 None:intergenic 40.0%
!! GAGAGTGATTTTGAGGGTTT+TGG - chr7_2:44355741-44355760 None:intergenic 40.0%
TTTGATGCGCTTTGCGTTTA+AGG - chr7_2:44355775-44355794 None:intergenic 40.0%
GTTGGATTTGATCCATTGGT+CGG - chr7_2:44355910-44355929 None:intergenic 40.0%
GAACGTTGGATTTGATCCAT+TGG - chr7_2:44355914-44355933 None:intergenic 40.0%
TGGGTAATAAGGTAGAACGT+TGG - chr7_2:44355928-44355947 None:intergenic 40.0%
!! AACAAGGAGGTAACGGATTA+GGG - chr7_2:44355955-44355974 None:intergenic 40.0%
TGATTTCGTTTCCAACAAGG+AGG - chr7_2:44355968-44355987 None:intergenic 40.0%
! AGTTGGTACTTCTTCTGCTA+TGG + chr7_2:44356082-44356101 Msa1059020:CDS 40.0%
CGACCCGGTTAATGTTAATT+TGG + chr7_2:44356250-44356269 Msa1059020:CDS 40.0%
AATGTTACGGTTAAGGATCC+GGG + chr7_2:44356296-44356315 Msa1059020:CDS 40.0%
!! ATTTGATCAGATGGTGGATG+CGG + chr7_2:44356343-44356362 Msa1059020:CDS 40.0%
!!! GGATGCGGTTTATTTTGCAA+TGG + chr7_2:44356358-44356377 Msa1059020:CDS 40.0%
AATGGAGAAACTTGGGTTTC+CGG + chr7_2:44356376-44356395 Msa1059020:CDS 40.0%
GCGATAAATATCCGAACATC+CGG - chr7_2:44356398-44356417 None:intergenic 40.0%
GGATGTTCGGATATTTATCG+CGG + chr7_2:44356397-44356416 Msa1059020:CDS 40.0%
TCGGATATTTATCGCGGAAA+CGG + chr7_2:44356403-44356422 Msa1059020:CDS 40.0%
AAACTCGGAAGAATTGAACC+CGG - chr7_2:44356548-44356567 None:intergenic 40.0%
TGAGAATATTAAACCGGGTC+CGG + chr7_2:44356586-44356605 Msa1059020:CDS 40.0%
!! TTTGGGTTGTTGTATCCGAA+CGG + chr7_2:44356623-44356642 Msa1059020:CDS 40.0%
TATACGGCTCATTATTCTCC+GGG - chr7_2:44356715-44356734 None:intergenic 40.0%
AGCCGTATAAAGGGAAGATT+TGG + chr7_2:44356726-44356745 Msa1059020:CDS 40.0%
!! TAAAGGGAAGATTTGGTGTG+TGG + chr7_2:44356733-44356752 Msa1059020:CDS 40.0%
AGCATGCCAAAAAACCGATT+CGG - chr7_2:44356867-44356886 None:intergenic 40.0%
TGGGCACAGTTTAAGAAGAT+TGG + chr7_2:44356908-44356927 Msa1059020:CDS 40.0%
GCACAGTTTAAGAAGATTGG+AGG + chr7_2:44356911-44356930 Msa1059020:CDS 40.0%
TTCCAAGTGTGACACTTTGA+AGG + chr7_2:44357726-44357745 Msa1059020:CDS 40.0%
! TGGGTTGAATGTTACTAGAG+GGG - chr7_2:44357892-44357911 None:intergenic 40.0%
TTGCAACACTTGGATTCCTT+TGG + chr7_2:44358111-44358130 Msa1059020:three_prime_UTR 40.0%
ACACTTGGATTCCTTTGGAT+TGG + chr7_2:44358116-44358135 Msa1059020:three_prime_UTR 40.0%
ACACAACACAACCCATTTCC+AGG + chr7_2:44355289-44355308 Msa1059020:five_prime_UTR 45.0%
GATGGATGGATCCTGGAAAT+GGG - chr7_2:44355303-44355322 None:intergenic 45.0%
AGATGGATGGATCCTGGAAA+TGG - chr7_2:44355304-44355323 None:intergenic 45.0%
TCACAACCAGGAATCTGCTA+CGG + chr7_2:44355696-44355715 Msa1059020:CDS 45.0%
TTTGATCCATTGGTCGGAGA+GGG - chr7_2:44355904-44355923 None:intergenic 45.0%
ATTTGATCCATTGGTCGGAG+AGG - chr7_2:44355905-44355924 None:intergenic 45.0%
!! GGTAACGGATTAGGGTTTGT+GGG - chr7_2:44355947-44355966 None:intergenic 45.0%
!! AGGTAACGGATTAGGGTTTG+TGG - chr7_2:44355948-44355967 None:intergenic 45.0%
!! CAACAAGGAGGTAACGGATT+AGG - chr7_2:44355956-44355975 None:intergenic 45.0%
CTAATCCGTTACCTCCTTGT+TGG + chr7_2:44355954-44355973 Msa1059020:CDS 45.0%
CGTTTCCAACAAGGAGGTAA+CGG - chr7_2:44355962-44355981 None:intergenic 45.0%
GTTTGATTCTACGCATCGCA+GGG - chr7_2:44356028-44356047 None:intergenic 45.0%
TGTTTGATTCTACGCATCGC+AGG - chr7_2:44356029-44356048 None:intergenic 45.0%
TTACGAAACGCAGCGTTTGA+AGG - chr7_2:44356131-44356150 None:intergenic 45.0%
TCGGAGCTCCAAGGAAAAAA+CGG - chr7_2:44356233-44356252 None:intergenic 45.0%
GTATAAACCAAACCCGAACC+CGG - chr7_2:44356317-44356336 None:intergenic 45.0%
AACTTGGGTTTCCGGATGTT+CGG + chr7_2:44356384-44356403 Msa1059020:CDS 45.0%
CGGATATTTATCGCGGAAAC+GGG + chr7_2:44356404-44356423 Msa1059020:CDS 45.0%
TATTTATCGCGGAAACGGGT+TGG + chr7_2:44356408-44356427 Msa1059020:CDS 45.0%
TGATCAACATCACCGCCATT+AGG - chr7_2:44356434-44356453 None:intergenic 45.0%
GGCGGTGATGTTGATCAAAT+TGG + chr7_2:44356437-44356456 Msa1059020:CDS 45.0%
GAGAATATTAAACCGGGTCC+GGG + chr7_2:44356587-44356606 Msa1059020:CDS 45.0%
! TTGGGTTGTTGTATCCGAAC+GGG + chr7_2:44356624-44356643 Msa1059020:CDS 45.0%
TCATAAACCCTAGACCCGTT+CGG - chr7_2:44356641-44356660 None:intergenic 45.0%
ATACGGCTCATTATTCTCCG+GGG - chr7_2:44356714-44356733 None:intergenic 45.0%
! GCATGCCAAAAAACCGATTC+GGG - chr7_2:44356866-44356885 None:intergenic 45.0%
! GCTTGCTACTCAAACTGCAA+AGG + chr7_2:44356952-44356971 Msa1059020:CDS 45.0%
! CTCCTTCAAAGTGTCACACT+TGG - chr7_2:44357731-44357750 None:intergenic 45.0%
! CAAGTGTGACACTTTGAAGG+AGG + chr7_2:44357729-44357748 Msa1059020:CDS 45.0%
GGGTTGAATGTTACTAGAGG+GGG - chr7_2:44357891-44357910 None:intergenic 45.0%
AGTAGGAGATGGATGGATCC+TGG - chr7_2:44355310-44355329 None:intergenic 50.0%
AGTTGACCGTAGCAGATTCC+TGG - chr7_2:44355705-44355724 None:intergenic 50.0%
GGAATCTGCTACGGTCAACT+AGG + chr7_2:44355705-44355724 Msa1059020:CDS 50.0%
CGGAGCTCCAAGGAAAAAAC+GGG - chr7_2:44356232-44356251 None:intergenic 50.0%
TACGGTTAAGGATCCGGGTT+CGG + chr7_2:44356301-44356320 Msa1059020:CDS 50.0%
AAAACCGGTTGTTGGGACAC+CGG + chr7_2:44356517-44356536 Msa1059020:CDS 50.0%
TATTAAACCGGGTCCGGGTA+CGG + chr7_2:44356592-44356611 Msa1059020:CDS 50.0%
TGTTGTATCCGAACGGGTCT+AGG + chr7_2:44356630-44356649 Msa1059020:CDS 50.0%
GTTGTATCCGAACGGGTCTA+GGG + chr7_2:44356631-44356650 Msa1059020:CDS 50.0%
TGATCTTTCGGGGAAGACAC+CGG + chr7_2:44356664-44356683 Msa1059020:CDS 50.0%
! GACACCGGAGTCAGAGTTTT+CGG + chr7_2:44356679-44356698 Msa1059020:CDS 50.0%
! AGTGCCGAAAACTCTGACTC+CGG - chr7_2:44356686-44356705 None:intergenic 50.0%
TACGGCTCATTATTCTCCGG+GGG - chr7_2:44356713-44356732 None:intergenic 50.0%
!! AGGGAAGATTTGGTGTGTGG+CGG + chr7_2:44356736-44356755 Msa1059020:CDS 50.0%
GGAGTAATGTGACGGCACTA+GGG + chr7_2:44356765-44356784 Msa1059020:CDS 50.0%
GAGTAATGTGACGGCACTAG+GGG + chr7_2:44356766-44356785 Msa1059020:CDS 50.0%
ATTGACGTATGCTTGCTCGC+AGG + chr7_2:44356793-44356812 Msa1059020:CDS 50.0%
TTGACGTATGCTTGCTCGCA+GGG + chr7_2:44356794-44356813 Msa1059020:CDS 50.0%
GTTGAACCGGATCACAAGTC+CGG - chr7_2:44356823-44356842 None:intergenic 50.0%
ACTTGTGATCCGGTTCAACC+CGG + chr7_2:44356824-44356843 Msa1059020:CDS 50.0%
!!! CACTTTTTCCCGGGTTGAAC+CGG - chr7_2:44356836-44356855 None:intergenic 50.0%
ACCAAACCCTCTCCGACCAA+TGG + chr7_2:44355895-44355914 Msa1059020:CDS 55.0%
TCCATTGGTCGGAGAGGGTT+TGG - chr7_2:44355899-44355918 None:intergenic 55.0%
CATCCACACCAAACTCCACG+TGG + chr7_2:44355991-44356010 Msa1059020:CDS 55.0%
AGATGAGGCCACGTGGAGTT+TGG - chr7_2:44356002-44356021 None:intergenic 55.0%
CGAAACGCAGCGTTTGAAGG+TGG - chr7_2:44356128-44356147 None:intergenic 55.0%
! TTTTCCTTGGAGCTCCGACC+CGG + chr7_2:44356235-44356254 Msa1059020:CDS 55.0%
ACGGTTAAGGATCCGGGTTC+GGG + chr7_2:44356302-44356321 Msa1059020:CDS 55.0%
! TAAGGATCCGGGTTCGGGTT+TGG + chr7_2:44356307-44356326 Msa1059020:CDS 55.0%
!! GAAACGGGTTGGCCTAATGG+CGG + chr7_2:44356419-44356438 Msa1059020:CDS 55.0%
AGAATTGAACCCGGTCGAGC+CGG - chr7_2:44356539-44356558 None:intergenic 55.0%
CCAAAATGTCGCTCCGTACC+CGG - chr7_2:44356608-44356627 None:intergenic 55.0%
! CGGGTACGGAGCGACATTTT+GGG + chr7_2:44356606-44356625 Msa1059020:CDS 55.0%
GGTGCGTGGGAGTAATGTGA+CGG + chr7_2:44356757-44356776 Msa1059020:CDS 55.0%
GGGAGTAATGTGACGGCACT+AGG + chr7_2:44356764-44356783 Msa1059020:CDS 55.0%
TAATGTGACGGCACTAGGGG+AGG + chr7_2:44356769-44356788 Msa1059020:CDS 55.0%
TGACGTATGCTTGCTCGCAG+GGG + chr7_2:44356795-44356814 Msa1059020:CDS 55.0%
CTTGTGATCCGGTTCAACCC+GGG + chr7_2:44356825-44356844 Msa1059020:CDS 55.0%
! AGGCCACGTGGAGTTTGGTG+TGG - chr7_2:44355997-44356016 None:intergenic 60.0%
TTAACCGGGTCGGAGCTCCA+AGG - chr7_2:44356242-44356261 None:intergenic 60.0%
!! GCGGAAACGGGTTGGCCTAA+TGG + chr7_2:44356416-44356435 Msa1059020:CDS 60.0%
! CCGGGTACGGAGCGACATTT+TGG + chr7_2:44356605-44356624 Msa1059020:CDS 60.0%
! GTTTTCGGCACTTCCTCCCC+CGG + chr7_2:44356694-44356713 Msa1059020:CDS 60.0%
GGCTCATTATTCTCCGGGGG+AGG - chr7_2:44356710-44356729 None:intergenic 60.0%
!! ATTTGGTGTGTGGCGGTGCG+TGG + chr7_2:44356743-44356762 Msa1059020:CDS 60.0%
! TTTGGTGTGTGGCGGTGCGT+GGG + chr7_2:44356744-44356763 Msa1059020:CDS 60.0%
ATGCTTGCTCGCAGGGGAAC+CGG + chr7_2:44356801-44356820 Msa1059020:CDS 60.0%
GGGGAACCGGACTTGTGATC+CGG + chr7_2:44356814-44356833 Msa1059020:CDS 60.0%
AGGGACGAGATGAGGCCACG+TGG - chr7_2:44356009-44356028 None:intergenic 65.0%
CGCATCGCAGGGACGAGATG+AGG - chr7_2:44356017-44356036 None:intergenic 65.0%
CGAGCCGGTGTCCCAACAAC+CGG - chr7_2:44356524-44356543 None:intergenic 65.0%
!! TGTTGGGACACCGGCTCGAC+CGG + chr7_2:44356526-44356545 Msa1059020:CDS 65.0%
!! GTTGGGACACCGGCTCGACC+GGG + chr7_2:44356527-44356546 Msa1059020:CDS 70.0%
TGTCGCTCCGTACCCGGACC+CGG - chr7_2:44356602-44356621 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 44355180 44358140 44355180 ID=Msa1059020;Name=Msa1059020
chr7_2 mRNA 44355180 44358140 44355180 ID=Msa1059020-mRNA-1;Parent=Msa1059020;Name=Msa1059020-mRNA-1;_AED=0.01;_eAED=0.01;_QI=314|0.5|0.66|1|1|1|3|348|480
chr7_2 exon 44355180 44355545 44355180 ID=Msa1059020-mRNA-1:exon:8066;Parent=Msa1059020-mRNA-1
chr7_2 exon 44355679 44356984 44355679 ID=Msa1059020-mRNA-1:exon:8067;Parent=Msa1059020-mRNA-1
chr7_2 exon 44357708 44358140 44357708 ID=Msa1059020-mRNA-1:exon:8068;Parent=Msa1059020-mRNA-1
chr7_2 five_prime_UTR 44355180 44355493 44355180 ID=Msa1059020-mRNA-1:five_prime_utr;Parent=Msa1059020-mRNA-1
chr7_2 CDS 44355494 44355545 44355494 ID=Msa1059020-mRNA-1:cds;Parent=Msa1059020-mRNA-1
chr7_2 CDS 44355679 44356984 44355679 ID=Msa1059020-mRNA-1:cds;Parent=Msa1059020-mRNA-1
chr7_2 CDS 44357708 44357792 44357708 ID=Msa1059020-mRNA-1:cds;Parent=Msa1059020-mRNA-1
chr7_2 three_prime_UTR 44357793 44358140 44357793 ID=Msa1059020-mRNA-1:three_prime_utr;Parent=Msa1059020-mRNA-1
Gene Sequence

>Msa1059020

ATGGCTTTGTTTCTCCTCTTTCTCTTCTCCATTCTACTCAACAACATTTCAAGTAGCTCAGCTTTTTCATCACAACCAGGAATCTGCTACGGTCAACTAGGAAACAACCTACCAAAACCCTCAAAATCACTCTCCTTAATCAAATCCTTAAACGCAAAGCGCATCAAAATCTATGACACAAACCCACAAATCCTAACAACCTTAAAAAACACAAACATTCAAATCTCAATCATGCTCCCAAACGAACTCATCACAAACATCTCATCAAACCAAACCCTCTCCGACCAATGGATCAAATCCAACGTTCTACCTTATTACCCACAAACCCTAATCCGTTACCTCCTTGTTGGAAACGAAATCATCTCATCCACACCAAACTCCACGTGGCCTCATCTCGTCCCTGCGATGCGTAGAATCAAACACTCTTTGAAAAAATTCAGAATCAAAAGAATCAAAGTTGGTACTTCTTCTGCTATGGATGTTTTAGAAACTTCTTTTCCACCTTCAAACGCTGCGTTTCGTAAAGATATAGCGGTTCAAGTTATTAAACCGATGCTTAGGTTTTTAAACCGGACTAAATCTTTTTTCTTTTTAGATGTTTACCCGTTTTTTCCTTGGAGCTCCGACCCGGTTAATGTTAATTTGGATTATGCTTTGTTTAGAGAGAGTAATGTTACGGTTAAGGATCCGGGTTCGGGTTTGGTTTATACGAATTTATTTGATCAGATGGTGGATGCGGTTTATTTTGCAATGGAGAAACTTGGGTTTCCGGATGTTCGGATATTTATCGCGGAAACGGGTTGGCCTAATGGCGGTGATGTTGATCAAATTGGTGCTAATGTTTTTAATGCTGCTACTTATAATAGAAATTTTGTTAAAAAAGTTATGAAAAAACCGGTTGTTGGGACACCGGCTCGACCGGGTTCAATTCTTCCGAGTTTTTTATTTGCTTTGTTTAATGAGAATATTAAACCGGGTCCGGGTACGGAGCGACATTTTGGGTTGTTGTATCCGAACGGGTCTAGGGTTTATGACATTGATCTTTCGGGGAAGACACCGGAGTCAGAGTTTTCGGCACTTCCTCCCCCGGAGAATAATGAGCCGTATAAAGGGAAGATTTGGTGTGTGGCGGTGCGTGGGAGTAATGTGACGGCACTAGGGGAGGCATTGACGTATGCTTGCTCGCAGGGGAACCGGACTTGTGATCCGGTTCAACCCGGGAAAAAGTGTTTTAAACCCGAATCGGTTTTTTGGCATGCTAGCTATGCGTTTAGTTCTTATTGGGCACAGTTTAAGAAGATTGGAGGAACTTGTTACTTTAATGGGCTTGCTACTCAAACTGCAAAGGATCCAAGTAAGTTATGGATCTTGCAAGTTTCCAAGTGTGACACTTTGAAGGAGGAGACTAATCATGAAAATGGAGCTCTCTTCATCCTCCATTGA

Protein sequence

>Msa1059020

MALFLLFLFSILLNNISSSSAFSSQPGICYGQLGNNLPKPSKSLSLIKSLNAKRIKIYDTNPQILTTLKNTNIQISIMLPNELITNISSNQTLSDQWIKSNVLPYYPQTLIRYLLVGNEIISSTPNSTWPHLVPAMRRIKHSLKKFRIKRIKVGTSSAMDVLETSFPPSNAAFRKDIAVQVIKPMLRFLNRTKSFFFLDVYPFFPWSSDPVNVNLDYALFRESNVTVKDPGSGLVYTNLFDQMVDAVYFAMEKLGFPDVRIFIAETGWPNGGDVDQIGANVFNAATYNRNFVKKVMKKPVVGTPARPGSILPSFLFALFNENIKPGPGTERHFGLLYPNGSRVYDIDLSGKTPESEFSALPPPENNEPYKGKIWCVAVRGSNVTALGEALTYACSQGNRTCDPVQPGKKCFKPESVFWHASYAFSSYWAQFKKIGGTCYFNGLATQTAKDPSKLWILQVSKCDTLKEETNHENGALFILH*