Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1462720 | XP_003592725.1 | 95.541 | 157 | 7 | 0 | 1 | 157 | 1 | 157 | 5.16e-98 | 289 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1462720 | sp|Q56P03|EAPP_HUMAN | 43.243 | 148 | 64 | 2 | 30 | 157 | 138 | 285 | 3.82e-35 | 126 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1462720 | G7IE91 | 95.541 | 157 | 7 | 0 | 1 | 157 | 1 | 157 | 2.47e-98 | 289 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010490 | Msa1462720 | 0.823834 | 1.118697e-53 | -8.615850e-47 |
| Msa0010500 | Msa1462720 | 0.816795 | 4.599582e-52 | -8.615850e-47 |
| Msa0020390 | Msa1462720 | 0.819474 | 1.139528e-52 | -8.615850e-47 |
| Msa0029260 | Msa1462720 | 0.823609 | 1.263081e-53 | -8.615850e-47 |
| Msa0118540 | Msa1462720 | 0.804375 | 2.226352e-49 | -8.615850e-47 |
| Msa1351540 | Msa1462720 | 0.811779 | 5.903242e-51 | -8.615850e-47 |
| Msa1360140 | Msa1462720 | 0.814195 | 1.743297e-51 | -8.615850e-47 |
| Msa1422810 | Msa1462720 | 0.802904 | 4.495974e-49 | -8.615850e-47 |
| Msa1436520 | Msa1462720 | 0.831614 | 1.510706e-55 | -8.615850e-47 |
| Msa1447890 | Msa1462720 | 0.809363 | 1.963475e-50 | -8.615850e-47 |
| Msa1454680 | Msa1462720 | 0.806021 | 1.006753e-49 | -8.615850e-47 |
| Msa0603570 | Msa1462720 | 0.807441 | 5.047265e-50 | -8.615850e-47 |
| Msa0609000 | Msa1462720 | 0.823021 | 1.733181e-53 | -8.615850e-47 |
| Msa0610390 | Msa1462720 | 0.800223 | 1.594162e-48 | -8.615850e-47 |
| Msa0618930 | Msa1462720 | 0.809740 | 1.629613e-50 | -8.615850e-47 |
| Msa0631350 | Msa1462720 | 0.826960 | 2.036712e-54 | -8.615850e-47 |
| Msa0669720 | Msa1462720 | 0.823943 | 1.055143e-53 | -8.615850e-47 |
| Msa0719420 | Msa1462720 | 0.808983 | 2.368753e-50 | -8.615850e-47 |
| Msa0772480 | Msa1462720 | 0.815445 | 9.209149e-52 | -8.615850e-47 |
| Msa0789680 | Msa1462720 | 0.806988 | 6.296479e-50 | -8.615850e-47 |
| Msa0798440 | Msa1462720 | 0.812257 | 4.643713e-51 | -8.615850e-47 |
| Msa0800370 | Msa1462720 | 0.820047 | 8.430353e-53 | -8.615850e-47 |
| Msa0833190 | Msa1462720 | -0.803671 | 3.118949e-49 | -8.615850e-47 |
| Msa0162130 | Msa1462720 | 0.803304 | 3.716383e-49 | -8.615850e-47 |
| Msa0169300 | Msa1462720 | 0.819534 | 1.104059e-52 | -8.615850e-47 |
| Msa0189520 | Msa1462720 | 0.806298 | 8.803552e-50 | -8.615850e-47 |
| Msa0231790 | Msa1462720 | 0.800842 | 1.192166e-48 | -8.615850e-47 |
| Msa1296830 | Msa1462720 | 0.817469 | 3.245564e-52 | -8.615850e-47 |
| Msa1307180 | Msa1462720 | 0.807962 | 3.910873e-50 | -8.615850e-47 |
| Msa1316360 | Msa1462720 | 0.812822 | 3.493980e-51 | -8.615850e-47 |
| Msa1336560 | Msa1462720 | 0.820218 | 7.702253e-53 | -8.615850e-47 |
| Msa0380100 | Msa1462720 | 0.805218 | 1.484508e-49 | -8.615850e-47 |
| Msa0458060 | Msa1462720 | 0.808052 | 3.743180e-50 | -8.615850e-47 |
| Msa0465550 | Msa1462720 | 0.808104 | 3.649599e-50 | -8.615850e-47 |
| Msa0994370 | Msa1462720 | 0.807409 | 5.126879e-50 | -8.615850e-47 |
| Msa1064250 | Msa1462720 | 0.811016 | 8.644772e-51 | -8.615850e-47 |
| Msa1077030 | Msa1462720 | 0.803758 | 2.991681e-49 | -8.615850e-47 |
| Msa0271360 | Msa1462720 | 0.800540 | 1.373625e-48 | -8.615850e-47 |
| Msa0271890 | Msa1462720 | 0.804733 | 1.874906e-49 | -8.615850e-47 |
| Msa0296790 | Msa1462720 | 0.800120 | 1.672682e-48 | -8.615850e-47 |
| Msa0296920 | Msa1462720 | 0.819591 | 1.071663e-52 | -8.615850e-47 |
| Msa0310860 | Msa1462720 | 0.803941 | 2.741746e-49 | -8.615850e-47 |
| Msa0358860 | Msa1462720 | 0.800600 | 1.335653e-48 | -8.615850e-47 |
| Msa1120810 | Msa1462720 | 0.822308 | 2.539254e-53 | -8.615850e-47 |
| Msa1125790 | Msa1462720 | -0.801968 | 7.009430e-49 | -8.615850e-47 |
| Msa1126850 | Msa1462720 | 0.809766 | 1.609114e-50 | -8.615850e-47 |
| Msa1133230 | Msa1462720 | 0.805670 | 1.193371e-49 | -8.615850e-47 |
| Msa1165780 | Msa1462720 | 0.817203 | 3.724859e-52 | -8.615850e-47 |
| Msa0511490 | Msa1462720 | 0.803424 | 3.509134e-49 | -8.615850e-47 |
| Msa0534900 | Msa1462720 | 0.813146 | 2.967589e-51 | -8.615850e-47 |
| Msa0550540 | Msa1462720 | 0.807460 | 5.000900e-50 | -8.615850e-47 |
| Msa0589190 | Msa1462720 | 0.805258 | 1.456293e-49 | -8.615850e-47 |
| Msa0887250 | Msa1462720 | 0.806176 | 9.342753e-50 | -8.615850e-47 |
| Msa0913240 | Msa1462720 | 0.820929 | 5.290420e-53 | -8.615850e-47 |
| Msa0944200 | Msa1462720 | 0.808694 | 2.730423e-50 | -8.615850e-47 |
| Msa0944610 | Msa1462720 | 0.800422 | 1.452327e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1462720 | MtrunA17_Chr1g0211931 | 95.541 | 157 | 7 | 0 | 1 | 157 | 1 | 157 | 4.75e-102 | 289 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1462720 | AT5G08320.1 | 57.333 | 150 | 60 | 2 | 8 | 156 | 3 | 149 | 1.41e-58 | 179 |
| Msa1462720 | AT5G08320.2 | 58.140 | 86 | 34 | 2 | 8 | 91 | 3 | 88 | 3.00e-28 | 101 |
Find 45 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAATCTTCACCGAATTTC+TGG | 0.119815 | tig0042539:+9705 | Msa1462720:intergenic |
| AGTTCAGGATCATAAAATTC+TGG | 0.290517 | tig0042539:+8670 | Msa1462720:intergenic |
| GCGTATACCTTTGACATTCT+AGG | 0.295692 | tig0042539:+8557 | Msa1462720:intergenic |
| TTCTGAATTGGCGGGTGATT+TGG | 0.316491 | tig0042539:+9627 | Msa1462720:intergenic |
| ATTACCTATTTGTTCTGAAT+TGG | 0.324208 | tig0042539:+9615 | Msa1462720:intergenic |
| AAACAAATATTGCTCTGTAC+TGG | 0.335543 | tig0042539:+7453 | Msa1462720:intergenic |
| AGCCAATCCAAGCATAATAT+TGG | 0.376981 | tig0042539:-7025 | Msa1462720:three_prime_UTR |
| TCATCCTTATCATCAAGTTC+AGG | 0.384477 | tig0042539:+8655 | Msa1462720:intergenic |
| CAGATACATTTGAATAAGTC+AGG | 0.387475 | tig0042539:+7211 | Msa1462720:intergenic |
| ACCTATTTGTTCTGAATTGG+CGG | 0.413160 | tig0042539:+9618 | Msa1462720:intergenic |
| AGGATCATAAAATTCTGGTT+TGG | 0.414361 | tig0042539:+8675 | Msa1462720:intergenic |
| TGATCTAAACAAAGAGATAC+TGG | 0.420713 | tig0042539:+7098 | Msa1462720:intergenic |
| AGAAGGACCGAAGGATTTGA+TGG | 0.428734 | tig0042539:-7359 | Msa1462720:CDS |
| TGAATCTTCACCGAATTTCT+GGG | 0.429578 | tig0042539:+9706 | Msa1462720:intergenic |
| AATTTAAATTCAGAAATAGT+TGG | 0.433060 | tig0042539:-7123 | Msa1462720:three_prime_UTR |
| AACCAATATTATGCTTGGAT+TGG | 0.435309 | tig0042539:+7023 | Msa1462720:intergenic |
| TGATCCTGAACTTGATGATA+AGG | 0.440526 | tig0042539:-8659 | Msa1462720:CDS |
| CAGAGTGTGGTGAAGCAAGC+AGG | 0.449032 | tig0042539:+8580 | Msa1462720:intergenic |
| CCCGCCAATTCAGAACAAAT+AGG | 0.457390 | tig0042539:-9619 | Msa1462720:intron |
| ACATATCCGACCCAGAAATT+CGG | 0.461568 | tig0042539:-9716 | Msa1462720:five_prime_UTR |
| TGTGGTGAAGCAAGCAGGGC+AGG | 0.461672 | tig0042539:+8585 | Msa1462720:intergenic |
| ATGACAACCAATATTATGCT+TGG | 0.466285 | tig0042539:+7018 | Msa1462720:intergenic |
| ATCGCTCCCATCAAATCCTT+CGG | 0.481338 | tig0042539:+7352 | Msa1462720:intergenic |
| TGTTTCAAACTGCAAGATTG+AGG | 0.481842 | tig0042539:-7435 | Msa1462720:CDS |
| TACAAAATTTAACCACTGCT+TGG | 0.487501 | tig0042539:+7188 | Msa1462720:intergenic |
| TTGATGATAAGGATGAAAAG+TGG | 0.496536 | tig0042539:-8648 | Msa1462720:CDS |
| TTGTAGCTCAATCATTCTGT+TGG | 0.497614 | tig0042539:-7170 | Msa1462720:three_prime_UTR |
| AACAAATATTGCTCTGTACT+GGG | 0.502947 | tig0042539:+7454 | Msa1462720:intergenic |
| CGAGAGTCAAAGATGGAAGA+AGG | 0.520059 | tig0042539:-9655 | Msa1462720:exon |
| TCTGTTTGTTCAACAGAGGT+AGG | 0.528193 | tig0042539:-7287 | Msa1462720:CDS |
| AGAGTGTGGTGAAGCAAGCA+GGG | 0.540606 | tig0042539:+8581 | Msa1462720:intergenic |
| CCTATTTGTTCTGAATTGGC+GGG | 0.548629 | tig0042539:+9619 | Msa1462720:intergenic |
| TGAATAAGTCAGGATTCACT+AGG | 0.553908 | tig0042539:+7221 | Msa1462720:intergenic |
| TGGCAGGAGAGATATATTGA+AGG | 0.563317 | tig0042539:+6985 | Msa1462720:intergenic |
| AAAATTACGAGAGTCAAAGA+TGG | 0.564892 | tig0042539:-9662 | Msa1462720:exon |
| CACTCTGCCTAGAATGTCAA+AGG | 0.575761 | tig0042539:-8564 | Msa1462720:intron |
| CTGCTCTGTTTGTTCAACAG+AGG | 0.584653 | tig0042539:-7291 | Msa1462720:CDS |
| AAAAGAAATAGAAGGACCGA+AGG | 0.590830 | tig0042539:-7368 | Msa1462720:CDS |
| AGGTGTCATTGATGAAGATG+AGG | 0.592996 | tig0042539:-7267 | Msa1462720:CDS |
| TTGACATTCTAGGCAGAGTG+TGG | 0.611704 | tig0042539:+8567 | Msa1462720:intergenic |
| GGCAGGAGAGATATATTGAA+GGG | 0.615000 | tig0042539:+6986 | Msa1462720:intergenic |
| TCTTCACCGAATTTCTGGGT+CGG | 0.616652 | tig0042539:+9710 | Msa1462720:intergenic |
| GAAGGACCGAAGGATTTGAT+GGG | 0.617675 | tig0042539:-7358 | Msa1462720:CDS |
| GAATAAGTCAGGATTCACTA+GGG | 0.644170 | tig0042539:+7222 | Msa1462720:intergenic |
| CAAATGTATCTGCCAAGCAG+TGG | 0.649369 | tig0042539:-7200 | Msa1462720:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATTTATCTTAATAGTTT+GGG | - | tig0042539:7354-7373 | Msa1462720:CDS | 10.0% |
| !!! | TTTTTTTTTTTTTGTACATT+GGG | + | tig0042539:7846-7865 | Msa1462720:intergenic | 10.0% |
| !!! | TTTTTTTTTTTTTTGTACAT+TGG | + | tig0042539:7847-7866 | Msa1462720:intergenic | 10.0% |
| !! | AAAAAAAAAATTCTAAATGT+GGG | + | tig0042539:9663-9682 | Msa1462720:intergenic | 10.0% |
| !! | AAAAAAAAAAATTCTAAATG+TGG | + | tig0042539:9664-9683 | Msa1462720:intergenic | 10.0% |
| !! | GTTTATTTATCTTAATAGTT+TGG | - | tig0042539:7353-7372 | Msa1462720:CDS | 15.0% |
| !! | AATTTGCAAAAATATCTATA+TGG | + | tig0042539:7716-7735 | Msa1462720:intergenic | 15.0% |
| !!! | CATTTGAAACAATAAAAAAA+TGG | + | tig0042539:8624-8643 | Msa1462720:intergenic | 15.0% |
| !!! | AACTTAGTATTTTACAAAAA+AGG | + | tig0042539:8984-9003 | Msa1462720:intergenic | 15.0% |
| !!! | TTCTGAATTTAAATTTTACA+AGG | + | tig0042539:9592-9611 | Msa1462720:intergenic | 15.0% |
| !! | AATTTAAATTCAGAAATAGT+TGG | - | tig0042539:9597-9616 | Msa1462720:intron | 15.0% |
| !! | AAAAAAAAATTCTAAATGTG+GGG | + | tig0042539:9662-9681 | Msa1462720:intergenic | 15.0% |
| !!! | TACAACATTTACATTTTGAT+TGG | + | tig0042539:7283-7302 | Msa1462720:intergenic | 20.0% |
| !! | TGTGAATAAAACCTTTATAT+GGG | + | tig0042539:7667-7686 | Msa1462720:intergenic | 20.0% |
| !! | ATGTGAATAAAACCTTTATA+TGG | + | tig0042539:7668-7687 | Msa1462720:intergenic | 20.0% |
| !! | ACAAATAAACAAAAATGAGA+TGG | + | tig0042539:7983-8002 | Msa1462720:intergenic | 20.0% |
| !! | TGGATTCATAAAAAAAAACA+TGG | - | tig0042539:8092-8111 | Msa1462720:intron | 20.0% |
| !! | TACCAATTTAAATGTGTAAT+AGG | + | tig0042539:8422-8441 | Msa1462720:intergenic | 20.0% |
| !! | ACAAATGGATATATTAAATC+AGG | + | tig0042539:8691-8710 | Msa1462720:intergenic | 20.0% |
| !!! | AATCAACAGAATTTGTTTTT+AGG | + | tig0042539:9046-9065 | Msa1462720:intergenic | 20.0% |
| !!! | TTTGAATTTTTGTTTTCTGA+GGG | + | tig0042539:9132-9151 | Msa1462720:intergenic | 20.0% |
| !!! | ATTTGAATTTTTGTTTTCTG+AGG | + | tig0042539:9133-9152 | Msa1462720:intergenic | 20.0% |
| !! | AAAAAAAATTCTAAATGTGG+GGG | + | tig0042539:9661-9680 | Msa1462720:intergenic | 20.0% |
| !! | ATTACCTATTTGTTCTGAAT+TGG | + | tig0042539:7108-7127 | Msa1462720:intergenic | 25.0% |
| ! | TGTCAAATTAACAGTTTATG+TGG | - | tig0042539:7397-7416 | Msa1462720:CDS | 25.0% |
| !!! | TAAATGCTCTATTGATTTGT+CGG | - | tig0042539:7465-7484 | Msa1462720:CDS | 25.0% |
| ! | ATTGAATGTAATCACATCTA+CGG | + | tig0042539:7536-7555 | Msa1462720:intergenic | 25.0% |
| ! | GTGAATAAAACCTTTATATG+GGG | + | tig0042539:7666-7685 | Msa1462720:intergenic | 25.0% |
| ! | TTATGGAGCTTATAAATGAA+GGG | + | tig0042539:7822-7841 | Msa1462720:intergenic | 25.0% |
| ! | ATTATGGAGCTTATAAATGA+AGG | + | tig0042539:7823-7842 | Msa1462720:intergenic | 25.0% |
| !!! | TTTTTTGTACATTGGGATTA+TGG | + | tig0042539:7839-7858 | Msa1462720:intergenic | 25.0% |
| !!! | GAATTCTAAAGTCATTTAAC+TGG | - | tig0042539:7873-7892 | Msa1462720:intron | 25.0% |
| ! | TTCATACGTACACATATTAT+TGG | - | tig0042539:8234-8253 | Msa1462720:intron | 25.0% |
| ! | TAATCTTGACAATCCATATA+TGG | - | tig0042539:8326-8345 | Msa1462720:intron | 25.0% |
| !!! | ACAATCCATATATGGTTTTA+CGG | - | tig0042539:8334-8353 | Msa1462720:intron | 25.0% |
| ! | TGCCTATTACACATTTAAAT+TGG | - | tig0042539:8417-8436 | Msa1462720:intron | 25.0% |
| ! | CTGATCGAATATAAAATAAC+TGG | + | tig0042539:8456-8475 | Msa1462720:intergenic | 25.0% |
| !!! | TGTTCTCTTTTTTTCAGTTT+GGG | + | tig0042539:8579-8598 | Msa1462720:intergenic | 25.0% |
| !!! | TTGTTCTCTTTTTTTCAGTT+TGG | + | tig0042539:8580-8599 | Msa1462720:intergenic | 25.0% |
| !! | TAACAAGCAGTATTTTACTT+TGG | + | tig0042539:8659-8678 | Msa1462720:intergenic | 25.0% |
| ! | AAGTTTACAACAGAATATGA+AGG | + | tig0042539:8829-8848 | Msa1462720:intergenic | 25.0% |
| ! | TATTCCTAGGTTATTACTTT+AGG | - | tig0042539:8890-8909 | Msa1462720:intron | 25.0% |
| ! | AAAACCTAAAGTAATAACCT+AGG | + | tig0042539:8897-8916 | Msa1462720:intergenic | 25.0% |
| !!! | ATTCTGTTGATTTTTATTCC+AGG | - | tig0042539:9054-9073 | Msa1462720:intron | 25.0% |
| !!! | TTGAATTTTTGTTTTCTGAG+GGG | + | tig0042539:9131-9150 | Msa1462720:intergenic | 25.0% |
| !!! | AAACACATAAATGCTGATTT+TGG | - | tig0042539:9154-9173 | Msa1462720:intron | 25.0% |
| ! | GATCAAGAAAAAGAAATAGA+AGG | - | tig0042539:9344-9363 | Msa1462720:intron | 25.0% |
| AAAATTACGAGAGTCAAAGA+TGG | - | tig0042539:7058-7077 | Msa1462720:three_prime_UTR | 30.0% | |
| TTCATCATCATCATACTACT+TGG | - | tig0042539:7132-7151 | Msa1462720:three_prime_UTR | 30.0% | |
| TTGAATGTAATCACATCTAC+GGG | + | tig0042539:7535-7554 | Msa1462720:intergenic | 30.0% | |
| ! | GTATGTTTTTCCCCATATAA+AGG | - | tig0042539:7653-7672 | Msa1462720:intron | 30.0% |
| AAAGACCAGGAAATTTAAAG+GGG | + | tig0042539:7769-7788 | Msa1462720:intergenic | 30.0% | |
| GAAAGACCAGGAAATTTAAA+GGG | + | tig0042539:7770-7789 | Msa1462720:intergenic | 30.0% | |
| AGAAAGACCAGGAAATTTAA+AGG | + | tig0042539:7771-7790 | Msa1462720:intergenic | 30.0% | |
| ATTGCTATCCTTTGATTAAC+TGG | - | tig0042539:7899-7918 | Msa1462720:intron | 30.0% | |
| ! | AGGATCATAAAATTCTGGTT+TGG | + | tig0042539:8048-8067 | Msa1462720:intergenic | 30.0% |
| AGTTCAGGATCATAAAATTC+TGG | + | tig0042539:8053-8072 | Msa1462720:intergenic | 30.0% | |
| ! | TTGATGATAAGGATGAAAAG+TGG | - | tig0042539:8072-8091 | Msa1462720:intron | 30.0% |
| GAGAACTATTGTACTAAACA+TGG | - | tig0042539:8384-8403 | Msa1462720:intron | 30.0% | |
| CAATGATCAGACAAAACAAA+TGG | + | tig0042539:8706-8725 | Msa1462720:intergenic | 30.0% | |
| ! | TTCATGATAGTGTGCATTTA+AGG | - | tig0042539:8847-8866 | Msa1462720:intron | 30.0% |
| TTAACCAAAGTATAGATCTG+AGG | - | tig0042539:9007-9026 | Msa1462720:intron | 30.0% | |
| !!! | TGAATTTTTGTTTTCTGAGG+GGG | + | tig0042539:9130-9149 | Msa1462720:intergenic | 30.0% |
| !!! | ATAAATGCTGATTTTGGTCA+TGG | - | tig0042539:9160-9179 | Msa1462720:intron | 30.0% |
| !!! | TAAATGCTGATTTTGGTCAT+GGG | - | tig0042539:9161-9180 | Msa1462720:intron | 30.0% |
| TACTGGTATAACTATGTTGT+GGG | - | tig0042539:9190-9209 | Msa1462720:intron | 30.0% | |
| AACAAATATTGCTCTGTACT+GGG | + | tig0042539:9269-9288 | Msa1462720:intergenic | 30.0% | |
| AAACAAATATTGCTCTGTAC+TGG | + | tig0042539:9270-9289 | Msa1462720:intergenic | 30.0% | |
| ! | GATTTTGAGCTTCTTTGTAT+CGG | + | tig0042539:9322-9341 | Msa1462720:intergenic | 30.0% |
| CAGATACATTTGAATAAGTC+AGG | + | tig0042539:9512-9531 | Msa1462720:intergenic | 30.0% | |
| TACAAAATTTAACCACTGCT+TGG | + | tig0042539:9535-9554 | Msa1462720:intergenic | 30.0% | |
| TGATCTAAACAAAGAGATAC+TGG | + | tig0042539:9625-9644 | Msa1462720:intergenic | 30.0% | |
| AACCAATATTATGCTTGGAT+TGG | + | tig0042539:9700-9719 | Msa1462720:intergenic | 30.0% | |
| ATGACAACCAATATTATGCT+TGG | + | tig0042539:9705-9724 | Msa1462720:intergenic | 30.0% | |
| TGAATCTTCACCGAATTTCT+GGG | + | tig0042539:7017-7036 | Msa1462720:intergenic | 35.0% | |
| TTGAATCTTCACCGAATTTC+TGG | + | tig0042539:7018-7037 | Msa1462720:intergenic | 35.0% | |
| ! | ACCTATTTGTTCTGAATTGG+CGG | + | tig0042539:7105-7124 | Msa1462720:intergenic | 35.0% |
| GAGCATTTAGCTAAACTACA+GGG | + | tig0042539:7454-7473 | Msa1462720:intergenic | 35.0% | |
| ! | AGAGCATTTAGCTAAACTAC+AGG | + | tig0042539:7455-7474 | Msa1462720:intergenic | 35.0% |
| ! | TTTTGCCCCTTTAAATTTCC+TGG | - | tig0042539:7761-7780 | Msa1462720:intron | 35.0% |
| ATGAAACATCTAGAAAGACC+AGG | + | tig0042539:7782-7801 | Msa1462720:intergenic | 35.0% | |
| GCAATCTACCAGTTAATCAA+AGG | + | tig0042539:7910-7929 | Msa1462720:intergenic | 35.0% | |
| ! | TGATCCTGAACTTGATGATA+AGG | - | tig0042539:8061-8080 | Msa1462720:intron | 35.0% |
| TCATCCTTATCATCAAGTTC+AGG | + | tig0042539:8068-8087 | Msa1462720:intergenic | 35.0% | |
| GGTCGTATTAATCACAAACT+TGG | - | tig0042539:8288-8307 | Msa1462720:intron | 35.0% | |
| ATCACAAACTTGGAAACAGA+AGG | - | tig0042539:8298-8317 | Msa1462720:intron | 35.0% | |
| TGTGACCGTAAAACCATATA+TGG | + | tig0042539:8342-8361 | Msa1462720:intergenic | 35.0% | |
| ! | ACAGCAACCAAAATCTTTTC+GGG | + | tig0042539:8774-8793 | Msa1462720:intergenic | 35.0% |
| ! | GACAGCAACCAAAATCTTTT+CGG | + | tig0042539:8775-8794 | Msa1462720:intergenic | 35.0% |
| CCTAGGAATACACTTAAATC+TGG | + | tig0042539:8880-8899 | Msa1462720:intergenic | 35.0% | |
| CCAGATTTAAGTGTATTCCT+AGG | - | tig0042539:8877-8896 | Msa1462720:intron | 35.0% | |
| TTCACGTCTCACATATCTTA+TGG | + | tig0042539:8931-8950 | Msa1462720:intergenic | 35.0% | |
| TGAACCTCAGATCTATACTT+TGG | + | tig0042539:9014-9033 | Msa1462720:intergenic | 35.0% | |
| !!! | CTGTTGATTTTTATTCCAGG+AGG | - | tig0042539:9057-9076 | Msa1462720:intron | 35.0% |
| ! | AGGACTTTAGAAGTCTATGA+TGG | - | tig0042539:9077-9096 | Msa1462720:intron | 35.0% |
| ! | GGACTTTAGAAGTCTATGAT+GGG | - | tig0042539:9078-9097 | Msa1462720:intron | 35.0% |
| ! | GTACTGGTATAACTATGTTG+TGG | - | tig0042539:9189-9208 | Msa1462720:intron | 35.0% |
| ACATTAATGACGTCACAACT+CGG | + | tig0042539:9218-9237 | Msa1462720:intergenic | 35.0% | |
| TGTTTCAAACTGCAAGATTG+AGG | - | tig0042539:9285-9304 | Msa1462720:intron | 35.0% | |
| AAAAGAAATAGAAGGACCGA+AGG | - | tig0042539:9352-9371 | Msa1462720:intron | 35.0% | |
| GAATAAGTCAGGATTCACTA+GGG | + | tig0042539:9501-9520 | Msa1462720:intergenic | 35.0% | |
| TGAATAAGTCAGGATTCACT+AGG | + | tig0042539:9502-9521 | Msa1462720:intergenic | 35.0% | |
| TTGTAGCTCAATCATTCTGT+TGG | - | tig0042539:9550-9569 | Msa1462720:intron | 35.0% | |
| !!! | TGCTTGGATTGGCTTTTTAA+GGG | + | tig0042539:9689-9708 | Msa1462720:intergenic | 35.0% |
| !!! | ATGCTTGGATTGGCTTTTTA+AGG | + | tig0042539:9690-9709 | Msa1462720:intergenic | 35.0% |
| AGCCAATCCAAGCATAATAT+TGG | - | tig0042539:9695-9714 | Msa1462720:five_prime_UTR | 35.0% | |
| ACATATCCGACCCAGAAATT+CGG | - | tig0042539:7004-7023 | Msa1462720:three_prime_UTR | 40.0% | |
| ! | CCTATTTGTTCTGAATTGGC+GGG | + | tig0042539:7104-7123 | Msa1462720:intergenic | 40.0% |
| GGAGCTTATAAATGAAGGGA+TGG | + | tig0042539:7818-7837 | Msa1462720:intergenic | 40.0% | |
| GCGTATACCTTTGACATTCT+AGG | + | tig0042539:8166-8185 | Msa1462720:intergenic | 40.0% | |
| TATTCGATCAGAACAGTCCT+AGG | - | tig0042539:8465-8484 | Msa1462720:intron | 40.0% | |
| ATAGCAATCACAAGCAACCT+AGG | + | tig0042539:8485-8504 | Msa1462720:intergenic | 40.0% | |
| AGGTTGCTTGTGATTGCTAT+CGG | - | tig0042539:8485-8504 | Msa1462720:intron | 40.0% | |
| GGTTCTTAAGAGACAAGCTA+AGG | + | tig0042539:8558-8577 | Msa1462720:intergenic | 40.0% | |
| ! | AACTCCTCCCGAAAAGATTT+TGG | - | tig0042539:8764-8783 | Msa1462720:intron | 40.0% |
| !!! | GATTTTGGTTGCTGTCTTCT+CGG | - | tig0042539:8779-8798 | Msa1462720:intron | 40.0% |
| GTGAGACGTGAACATTATTC+AGG | - | tig0042539:8939-8958 | Msa1462720:intron | 40.0% | |
| !! | ATAGACTTCTAAAGTCCTCC+TGG | + | tig0042539:9075-9094 | Msa1462720:intergenic | 40.0% |
| TTGGTCATGGGAATTAGTAC+TGG | - | tig0042539:9173-9192 | Msa1462720:intron | 40.0% | |
| GTCATTAATGTCTGTCTTGC+AGG | - | tig0042539:9227-9246 | Msa1462720:intron | 40.0% | |
| TCTGTTTGTTCAACAGAGGT+AGG | - | tig0042539:9433-9452 | Msa1462720:intron | 40.0% | |
| !! | AGGTGTCATTGATGAAGATG+AGG | - | tig0042539:9453-9472 | Msa1462720:intron | 40.0% |
| ! | TCTTCACCGAATTTCTGGGT+CGG | + | tig0042539:7013-7032 | Msa1462720:intergenic | 45.0% |
| CGAGAGTCAAAGATGGAAGA+AGG | - | tig0042539:7065-7084 | Msa1462720:three_prime_UTR | 45.0% | |
| ! | TTCTGAATTGGCGGGTGATT+TGG | + | tig0042539:7096-7115 | Msa1462720:intergenic | 45.0% |
| CCCGCCAATTCAGAACAAAT+AGG | - | tig0042539:7101-7120 | Msa1462720:three_prime_UTR | 45.0% | |
| !! | AGATGTGTCGGTGCTACAAA+GGG | + | tig0042539:7496-7515 | Msa1462720:intergenic | 45.0% |
| ACACCTTCGATCAGATGTGT+CGG | + | tig0042539:7508-7527 | Msa1462720:intergenic | 45.0% | |
| !! | TGAGTGTTGGTGTCGTATGT+CGG | - | tig0042539:7597-7616 | Msa1462720:intron | 45.0% |
| !! | TGTCGGTGCTATTGTGTTCA+AGG | - | tig0042539:7614-7633 | Msa1462720:intron | 45.0% |
| !! | GTCGGTGCTATTGTGTTCAA+GGG | - | tig0042539:7615-7634 | Msa1462720:intron | 45.0% |
| GCTATTGTGTTCAAGGGACT+TGG | - | tig0042539:7621-7640 | Msa1462720:intron | 45.0% | |
| TTGACATTCTAGGCAGAGTG+TGG | + | tig0042539:8156-8175 | Msa1462720:intergenic | 45.0% | |
| CACTCTGCCTAGAATGTCAA+AGG | - | tig0042539:8156-8175 | Msa1462720:intron | 45.0% | |
| !! | GCAACCAAAATCTTTTCGGG+AGG | + | tig0042539:8771-8790 | Msa1462720:intergenic | 45.0% |
| AGAAGGACCGAAGGATTTGA+TGG | - | tig0042539:9361-9380 | Msa1462720:intron | 45.0% | |
| GAAGGACCGAAGGATTTGAT+GGG | - | tig0042539:9362-9381 | Msa1462720:intron | 45.0% | |
| ATCGCTCCCATCAAATCCTT+CGG | + | tig0042539:9371-9390 | Msa1462720:intergenic | 45.0% | |
| CTGCTCTGTTTGTTCAACAG+AGG | - | tig0042539:9429-9448 | Msa1462720:intron | 45.0% | |
| CAAATGTATCTGCCAAGCAG+TGG | - | tig0042539:9520-9539 | Msa1462720:intron | 45.0% | |
| !! | GATGTGTCGGTGCTACAAAG+GGG | + | tig0042539:7495-7514 | Msa1462720:intergenic | 50.0% |
| !! | CAGATGTGTCGGTGCTACAA+AGG | + | tig0042539:7497-7516 | Msa1462720:intergenic | 50.0% |
| TGTCGATGACGTGTGAGTGT+TGG | - | tig0042539:7584-7603 | Msa1462720:intron | 50.0% | |
| AGAGTGTGGTGAAGCAAGCA+GGG | + | tig0042539:8142-8161 | Msa1462720:intergenic | 50.0% | |
| ! | GCACCGACACATCTGATCGA+AGG | - | tig0042539:7502-7521 | Msa1462720:intron | 55.0% |
| CAGAGTGTGGTGAAGCAAGC+AGG | + | tig0042539:8143-8162 | Msa1462720:intergenic | 55.0% | |
| !! | TTACCCGTGCCACTTTGCGT+GGG | - | tig0042539:8257-8276 | Msa1462720:intron | 55.0% |
| TGTGGTGAAGCAAGCAGGGC+AGG | + | tig0042539:8138-8157 | Msa1462720:intergenic | 60.0% | |
| !! | GTTACCCGTGCCACTTTGCG+TGG | - | tig0042539:8256-8275 | Msa1462720:intron | 60.0% |
| !! | TACCCGTGCCACTTTGCGTG+GGG | - | tig0042539:8258-8277 | Msa1462720:intron | 60.0% |
| !! | ACCCGTGCCACTTTGCGTGG+GGG | - | tig0042539:8259-8278 | Msa1462720:intron | 65.0% |
| ! | CACTTTGCGTGGGGGGGTGT+GGG | - | tig0042539:8267-8286 | Msa1462720:intron | 65.0% |
| CCCCCCACGCAAAGTGGCAC+GGG | + | tig0042539:8263-8282 | Msa1462720:intergenic | 70.0% | |
| !! | CCCGTGCCACTTTGCGTGGG+GGG | - | tig0042539:8260-8279 | Msa1462720:intron | 70.0% |
| CCCCCCCACGCAAAGTGGCA+CGG | + | tig0042539:8264-8283 | Msa1462720:intergenic | 70.0% | |
| !! | CCGTGCCACTTTGCGTGGGG+GGG | - | tig0042539:8261-8280 | Msa1462720:intron | 70.0% |
| CCACACCCCCCCACGCAAAG+TGG | + | tig0042539:8269-8288 | Msa1462720:intergenic | 70.0% | |
| CCACTTTGCGTGGGGGGGTG+TGG | - | tig0042539:8266-8285 | Msa1462720:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0042539 | gene | 6990 | 9752 | 6990 | ID=Msa1462720;Name=Msa1462720 |
| tig0042539 | mRNA | 6990 | 9752 | 6990 | ID=Msa1462720-mRNA-1;Parent=Msa1462720;Name=Msa1462720-mRNA-1;_AED=0.01;_eAED=0.01;_QI=87|1|1|1|1|1|3|239|157 |
| tig0042539 | exon | 6990 | 7493 | 6990 | ID=Msa1462720-mRNA-1:exon:23781;Parent=Msa1462720-mRNA-1 |
| tig0042539 | exon | 8565 | 8727 | 8565 | ID=Msa1462720-mRNA-1:exon:23780;Parent=Msa1462720-mRNA-1 |
| tig0042539 | exon | 9620 | 9752 | 9620 | ID=Msa1462720-mRNA-1:exon:23779;Parent=Msa1462720-mRNA-1 |
| tig0042539 | five_prime_UTR | 9666 | 9752 | 9666 | ID=Msa1462720-mRNA-1:five_prime_utr;Parent=Msa1462720-mRNA-1 |
| tig0042539 | CDS | 9620 | 9665 | 9620 | ID=Msa1462720-mRNA-1:cds;Parent=Msa1462720-mRNA-1 |
| tig0042539 | CDS | 8565 | 8727 | 8565 | ID=Msa1462720-mRNA-1:cds;Parent=Msa1462720-mRNA-1 |
| tig0042539 | CDS | 7229 | 7493 | 7229 | ID=Msa1462720-mRNA-1:cds;Parent=Msa1462720-mRNA-1 |
| tig0042539 | three_prime_UTR | 6990 | 7228 | 6990 | ID=Msa1462720-mRNA-1:three_prime_utr;Parent=Msa1462720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
