AlfalfaGEDB | Msa1077030

M. sativa cultivar zhongmu-4 / Msa1077030

KEGG: -
GO: -
PFAM: PF15375.9

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1077030	XP_013449890.1	97.765	179	4	0	20	198	1	179	3.69e-121	350

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1077030	I3S8G2	97.765	179	4	0	20	198	1	179	1.76e-121	350

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003640	Msa1077030	0.805854	1.091767e-49	-8.615850e-47
Msa0006040	Msa1077030	0.802335	5.891581e-49	-8.615850e-47
Msa0007440	Msa1077030	0.818297	2.109557e-52	-8.615850e-47
Msa0010490	Msa1077030	0.845006	5.314253e-59	-8.615850e-47
Msa0010500	Msa1077030	0.831405	1.700565e-55	-8.615850e-47
Msa0011960	Msa1077030	0.872719	2.562272e-67	-8.615850e-47
Msa0012080	Msa1077030	0.804739	1.869659e-49	-8.615850e-47
Msa0020390	Msa1077030	0.830846	2.333219e-55	-8.615850e-47
Msa0021220	Msa1077030	0.802264	6.092624e-49	-8.615850e-47
Msa0023000	Msa1077030	0.815450	9.188318e-52	-8.615850e-47

Showing 1 to 10 of 663 entries

Previous1 2 3 4 5…67Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1077030	MtrunA17_Chr7g0261221	97.765	179	4	0	20	198	1	179	3.40e-125	350

Showing 1 to 1 of 1 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1077030	AT2G44820.2	57.480	127	51	2	43	168	20	144	4.42e-36	125
Msa1077030	AT2G44820.1	58.268	127	50	2	43	168	39	163	4.85e-36	125

Showing 1 to 2 of 2 entries

Previous1Next

Find 43 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACACAAACCAGAGGACAG+AGG	0.717192	7_2:-75565716	Msa1077030:CDS
AAATTAATAAGATAATTTAA+AGG	0.304834	7_2:+75569188	None:intergenic
AACTAATGCACGAAATAGAT+GGG	0.488096	7_2:-75565345	Msa1077030:three_prime_UTR
AACTTCAAACCTCTGTCCTC+TGG	0.439918	7_2:+75565707	None:intergenic
AAGAAACAAGCTCACGGACG+TGG	0.521086	7_2:-75566555	Msa1077030:CDS
AAGAGAACATAACAATAAGC+AGG	0.534086	7_2:-75566526	Msa1077030:CDS
AAGGTAATCTTTGATTCTTG+AGG	0.525330	7_2:+75565954	None:intergenic
AATGGACATCAGGAAGATTA+TGG	0.351249	7_2:-75566496	Msa1077030:CDS
ACGTTATTCAACTTCTTTAT+AGG	0.212149	7_2:-75565457	Msa1077030:three_prime_UTR
ACTAATGCACGAAATAGATG+GGG	0.669882	7_2:-75565344	Msa1077030:three_prime_UTR

Showing 1 to 10 of 43 entries

Previous1 2 3 4 5Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ATCTTACTAGCATAAAACTG+AGG	-	chr7_2:75565505-75565524	Msa1077030:three_prime_UTR	30.0%
GCTAAGGCTTAATAATCAAA+TGG	+	chr7_2:75565649-75565668	None:intergenic	30.0%
AATAGAGTGATAGAAATTGG+AGG	-	chr7_2:75565980-75565999	Msa1077030:intron	30.0%
ACCCTTAACAACTTATATCT+TGG	+	chr7_2:75566407-75566426	None:intergenic	30.0%
TTGAATTTGAGTAGAAGAGT+CGG	-	chr7_2:75566446-75566465	Msa1077030:intron	30.0%
TGTTGCATTAATGTTAGTGT+TGG	-	chr7_2:75566644-75566663	Msa1077030:intron	30.0%
GTTGCATTAATGTTAGTGTT+GGG	-	chr7_2:75566645-75566664	Msa1077030:intron	30.0%
TTAGACTCTATCTGATGATT+AGG	-	chr7_2:75566679-75566698	Msa1077030:intron	30.0%
TCTGAAAACAATAACAATGG+GGG	+	chr7_2:75566755-75566774	None:intergenic	30.0%
GGTAAAGTAATGGTTTGAAT+TGG	-	chr7_2:75567226-75567245	Msa1077030:intron	30.0%

Showing 1 to 10 of 236 entries

Previous1 2 3 4 5…24Next

Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	75565344	75569207	75565344	ID=Msa1077030;Name=Msa1077030
chr7_2	mRNA	75565344	75569207	75565344	ID=Msa1077030-mRNA-1;Parent=Msa1077030;Name=Msa1077030-mRNA-1;_AED=0.15;_eAED=0.15;_QI=136\|0.75\|1\|1\|0.75\|0.8\|5\|194\|198
chr7_2	exon	75565344	75565801	75565344	ID=Msa1077030-mRNA-1:exon:18037;Parent=Msa1077030-mRNA-1
chr7_2	exon	75565892	75565978	75565892	ID=Msa1077030-mRNA-1:exon:18036;Parent=Msa1077030-mRNA-1
chr7_2	exon	75566090	75566160	75566090	ID=Msa1077030-mRNA-1:exon:18035;Parent=Msa1077030-mRNA-1
chr7_2	exon	75566478	75566600	75566478	ID=Msa1077030-mRNA-1:exon:18034;Parent=Msa1077030-mRNA-1
chr7_2	exon	75569020	75569207	75569020	ID=Msa1077030-mRNA-1:exon:18033;Parent=Msa1077030-mRNA-1
chr7_2	five_prime_UTR	75569072	75569207	75569072	ID=Msa1077030-mRNA-1:five_prime_utr;Parent=Msa1077030-mRNA-1
chr7_2	CDS	75569020	75569071	75569020	ID=Msa1077030-mRNA-1:cds;Parent=Msa1077030-mRNA-1
chr7_2	CDS	75566478	75566600	75566478	ID=Msa1077030-mRNA-1:cds;Parent=Msa1077030-mRNA-1
chr7_2	CDS	75566090	75566160	75566090	ID=Msa1077030-mRNA-1:cds;Parent=Msa1077030-mRNA-1
chr7_2	CDS	75565892	75565978	75565892	ID=Msa1077030-mRNA-1:cds;Parent=Msa1077030-mRNA-1
chr7_2	CDS	75565538	75565801	75565538	ID=Msa1077030-mRNA-1:cds;Parent=Msa1077030-mRNA-1
chr7_2	three_prime_UTR	75565344	75565537	75565344	ID=Msa1077030-mRNA-1:three_prime_utr;Parent=Msa1077030-mRNA-1

Gene Sequence

>Msa1077030

ATGGAACGTGAAACATTGAGACACGATCTTACTAGCATAAAACTGAGGAGAGTAACTATGGGAAAGATGTACAAGAAGAAACAAGCTCACGGACGTGGACCTCCAAGAGAACATAACAATAAGCAGGAAAATGAAATGGACATCAGGAAGATTATGGAAGACGTCCAAAACTTCAGCAACTCGCATATGACATGGAAAGAGCGCAAAAAGGTTGAAGATAGGAAGGTTGTTTCCCTTGGTGGGAAGCCCCTCAAGAATCAAAGATTACCTTTAAGTGTGGCACGACCAATGATGAAGAAACAAAAACAGAGGGAGGAAAAAATGCTCCAAGAGCGTATGATTCTAGGACGTTTTGGGGGAAAGGATGGTGGTAGCAGCAGTAAAAAACCAGCTGGAAAACACAAACCAGAGGACAGAGGTTTGAAGTTAAGTGAAGGTCGATTTAAAAATGGCATACTCGACGTGAAGCATTTGTTGAAGTCAACACCCACAAGAGGTCATGACACTGGAAAAAATATGTCAAATACAGGAAAAAGAAAAGGAGGCAACTGGAAACATGATAAAAAGGGTGGTGGTAAGAAGGATCAAATGTTTTAG

Protein sequence

>Msa1077030

MERETLRHDLTSIKLRRVTMGKMYKKKQAHGRGPPREHNNKQENEMDIRKIMEDVQNFSNSHMTWKERKKVEDRKVVSLGGKPLKNQRLPLSVARPMMKKQKQREEKMLQERMILGRFGGKDGGSSSKKPAGKHKPEDRGLKLSEGRFKNGILDVKHLLKSTPTRGHDTGKNMSNTGKRKGGNWKHDKKGGGKKDQMF*