AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1077030


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1077030 MtrunA17_Chr7g0261221 97.765 179 4 0 20 198 1 179 3.40e-125 350
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1077030 AT2G44820.2 57.480 127 51 2 43 168 20 144 4.42e-36 125
Msa1077030 AT2G44820.1 58.268 127 50 2 43 168 39 163 4.85e-36 125

Find 43 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACGTTATTCAACTTCTTTAT+AGG 0.212149 7_2:-75565457 Msa1077030:three_prime_UTR
CGTATGATTCTAGGACGTTT+TGG 0.217863 7_2:-75565779 Msa1077030:CDS
ATTGGTCGTGCCACACTTAA+AGG 0.224539 7_2:+75565935 None:intergenic
TGCTTATTGTTATGTTCTCT+TGG 0.258679 7_2:+75566528 None:intergenic
TAGAGAAAATACTGAAGTTT+TGG 0.269693 7_2:+75566466 None:intergenic
CAACTGGAAACATGATAAAA+AGG 0.272902 7_2:-75565567 Msa1077030:CDS
GCCTTTCAGCGTATGATTCT+AGG 0.290954 7_2:-75565788 Msa1077030:intron
AAATTAATAAGATAATTTAA+AGG 0.304834 7_2:+75569188 None:intergenic
CTGTATGATCTTTATAAATC+TGG 0.342433 7_2:-75565490 Msa1077030:three_prime_UTR
AATGGACATCAGGAAGATTA+TGG 0.351249 7_2:-75566496 Msa1077030:CDS
GAACTAATGCACGAAATAGA+TGG 0.358945 7_2:-75565346 Msa1077030:three_prime_UTR
GGTTTGAGACTTAGATTAGA+TGG 0.368250 7_2:-75569068 Msa1077030:exon
CCAGTGTCATGACCTCTTGT+GGG 0.400870 7_2:+75565626 None:intergenic
AGGAAAATGAAATGGACATC+AGG 0.425149 7_2:-75566506 Msa1077030:CDS
TTATTGTTATGTTCTCTTGG+AGG 0.434023 7_2:+75566531 None:intergenic
AACTTCAAACCTCTGTCCTC+TGG 0.439918 7_2:+75565707 None:intergenic
GACATGGAAAGAGCGCAAAA+AGG 0.445441 7_2:-75566125 Msa1077030:CDS
CAATAAGCAGGAAAATGAAA+TGG 0.447339 7_2:-75566514 Msa1077030:CDS
GGTTGTTTCCCTTGGTGGGA+AGG 0.454986 7_2:-75566089 Msa1077030:intron
GATAGGAAGGTTGTTTCCCT+TGG 0.461391 7_2:-75566097 Msa1077030:CDS
TCCAGTGTCATGACCTCTTG+TGG 0.466337 7_2:+75565625 None:intergenic
AACTAATGCACGAAATAGAT+GGG 0.488096 7_2:-75565345 Msa1077030:three_prime_UTR
AGGTAATCTTTGATTCTTGA+GGG 0.502643 7_2:+75565955 None:intergenic
AAGAAACAAGCTCACGGACG+TGG 0.521086 7_2:-75566555 Msa1077030:CDS
AAGGTAATCTTTGATTCTTG+AGG 0.525330 7_2:+75565954 None:intergenic
GGAAGGTTGTTTCCCTTGGT+GGG 0.530525 7_2:-75566093 Msa1077030:CDS
AAGAGAACATAACAATAAGC+AGG 0.534086 7_2:-75566526 Msa1077030:CDS
AGGAAGGTTGTTTCCCTTGG+TGG 0.540449 7_2:-75566094 Msa1077030:CDS
TAAAGAAGTTGAATAACGTA+AGG 0.562313 7_2:+75565461 None:intergenic
TTGAAGTCAACACCCACAAG+AGG 0.593893 7_2:-75565638 Msa1077030:CDS
TCAAAGATTACCTTTAAGTG+TGG 0.597312 7_2:-75565945 Msa1077030:CDS
GGTAATCTTTGATTCTTGAG+GGG 0.603282 7_2:+75565956 None:intergenic
CCCACAAGAGGTCATGACAC+TGG 0.620094 7_2:-75565626 Msa1077030:CDS
TAGGCAACTCGCATATGACA+TGG 0.625414 7_2:-75566141 Msa1077030:CDS
AGACCTCACCTTCCCACCAA+GGG 0.627792 7_2:+75566081 None:intergenic
AGAGGTTTGAAGTTAAGTGA+AGG 0.641153 7_2:-75565698 Msa1077030:CDS
TACAAGAAGAAACAAGCTCA+CGG 0.651983 7_2:-75566561 Msa1077030:CDS
TAGACCTCACCTTCCCACCA+AGG 0.660546 7_2:+75566080 None:intergenic
ACTAATGCACGAAATAGATG+GGG 0.669882 7_2:-75565344 Msa1077030:three_prime_UTR
ACTAGCATAAAACTGAGGAG+AGG 0.682992 7_2:-75569019 Msa1077030:intron
AGCTGGAAAACACAAACCAG+AGG 0.689560 7_2:-75565723 Msa1077030:CDS
ATCTTACTAGCATAAAACTG+AGG 0.704083 7_2:-75569024 Msa1077030:CDS
AAACACAAACCAGAGGACAG+AGG 0.717192 7_2:-75565716 Msa1077030:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATGTATATTATTTAGATTT+AGG - chr7_2:75566962-75566981 Msa1077030:intron 10.0%
!!! TCATTTCATTATTTTAAATT+TGG - chr7_2:75568278-75568297 Msa1077030:intron 10.0%
!!! CATTTCATTATTTTAAATTT+GGG - chr7_2:75568279-75568298 Msa1077030:intron 10.0%
!!! ATTTCATTATTTTAAATTTG+GGG - chr7_2:75568280-75568299 Msa1077030:intron 10.0%
!!! TTTTATAACTATTTTCTTCT+TGG - chr7_2:75565402-75565421 Msa1077030:three_prime_UTR 15.0%
!!! TTTATAACTATTTTCTTCTT+GGG - chr7_2:75565403-75565422 Msa1077030:three_prime_UTR 15.0%
!!! TACTATATTAGTTTATGTTT+CGG - chr7_2:75566142-75566161 Msa1077030:intron 15.0%
!!! AACTTTTGTTATTTATTGTT+AGG - chr7_2:75566902-75566921 Msa1077030:intron 15.0%
!! TTGAATAAACTTAACTAATA+AGG + chr7_2:75567025-75567044 None:intergenic 15.0%
!!! TGATTAGTTTTATTAGACAA+TGG - chr7_2:75565364-75565383 Msa1077030:three_prime_UTR 20.0%
!!! TATTTTCACTAAAACAGAAA+AGG + chr7_2:75565438-75565457 None:intergenic 20.0%
!!! TTTTCTGTTTTAGTGAAAAT+AGG - chr7_2:75565437-75565456 Msa1077030:three_prime_UTR 20.0%
!! TATAATAGAGTGATAGAAAT+TGG - chr7_2:75565977-75565996 Msa1077030:intron 20.0%
!!! TAAAGTTTAGTTCTGTTATT+TGG - chr7_2:75566054-75566073 Msa1077030:intron 20.0%
!! CTAATATAGTATATGAAGTT+TGG + chr7_2:75566133-75566152 None:intergenic 20.0%
!! AATAAATGTGTAAACAGATT+AGG - chr7_2:75566368-75566387 Msa1077030:intron 20.0%
!!! TTTTGATTTTCTTCTTAACA+TGG + chr7_2:75566545-75566564 None:intergenic 20.0%
!! TAAGTTTATTCAAATTCCAA+CGG - chr7_2:75567032-75567051 Msa1077030:intron 20.0%
!! TGCTGGATATATTTATTAAT+TGG - chr7_2:75567085-75567104 Msa1077030:intron 20.0%
!! GGAATATTGTAAATTGATAT+CGG + chr7_2:75567111-75567130 None:intergenic 20.0%
!! ATTTGATCTATAATTTCTCT+GGG + chr7_2:75567132-75567151 None:intergenic 20.0%
!! AGAAATTATAGATCAAATCT+TGG - chr7_2:75567134-75567153 Msa1077030:intron 20.0%
!! GAAATTATAGATCAAATCTT+GGG - chr7_2:75567135-75567154 Msa1077030:intron 20.0%
!! TATAAGATTGATATTGAATG+CGG - chr7_2:75567161-75567180 Msa1077030:intron 20.0%
!! TTGAATATAGTAGAAGAAAA+AGG + chr7_2:75567411-75567430 None:intergenic 20.0%
!!! CGATTTTATGCTTTATTATT+GGG + chr7_2:75567463-75567482 None:intergenic 20.0%
!! AAATGAATGATTTAAAAGCT+TGG + chr7_2:75567840-75567859 None:intergenic 20.0%
!!! TTTCAATTTTCAGTAACTAT+GGG - chr7_2:75567938-75567957 Msa1077030:intron 20.0%
!! TAAAACATCCAATTCAAATT+TGG + chr7_2:75568236-75568255 None:intergenic 20.0%
!! TGTTGGAGTTAAATAATTTA+TGG - chr7_2:75568303-75568322 Msa1077030:intron 20.0%
!! AGTAGTCATTATAAAAAAGA+AGG + chr7_2:75568353-75568372 None:intergenic 20.0%
!! CAAAAATAGAACAAGATAAA+AGG + chr7_2:75569118-75569137 None:intergenic 20.0%
!!! TTCTATTTTTGTTTGTATAC+TGG - chr7_2:75569127-75569146 Msa1077030:five_prime_UTR 20.0%
!! TATTCGCATTTTTATCATGT+TGG - chr7_2:75565716-75565735 Msa1077030:CDS 25.0%
!! ATTCGCATTTTTATCATGTT+GGG - chr7_2:75565717-75565736 Msa1077030:CDS 25.0%
! ATTGAATTACTTCATAAGCA+TGG - chr7_2:75565843-75565862 Msa1077030:intron 25.0%
! TAATGAGTTATGTTGTGAAA+AGG - chr7_2:75565894-75565913 Msa1077030:CDS 25.0%
! TATTTGGATGAAATTTAGAC+AGG - chr7_2:75566070-75566089 Msa1077030:intron 25.0%
! TACTTATCAGATGAAAAGAA+TGG - chr7_2:75566093-75566112 Msa1077030:CDS 25.0%
! TATGTTTCGGATGAATTAAT+TGG - chr7_2:75566155-75566174 Msa1077030:intron 25.0%
!!! AATTGGTTTTAAATAGACGA+AGG - chr7_2:75566172-75566191 Msa1077030:intron 25.0%
! AATATGGAAAATAATACACG+AGG + chr7_2:75566220-75566239 None:intergenic 25.0%
!! GTGTATTATTTTCCATATTC+TGG - chr7_2:75566221-75566240 Msa1077030:intron 25.0%
!! ATTATTTTCCATATTCTGGA+TGG - chr7_2:75566225-75566244 Msa1077030:intron 25.0%
! TACTACAGTACACAATATAT+AGG + chr7_2:75566289-75566308 None:intergenic 25.0%
! AACCAAGATATAAGTTGTTA+AGG - chr7_2:75566402-75566421 Msa1077030:intron 25.0%
! ACCAAGATATAAGTTGTTAA+GGG - chr7_2:75566403-75566422 Msa1077030:intron 25.0%
! TATTATTACGCAAAGTTGTA+TGG - chr7_2:75566608-75566627 Msa1077030:intron 25.0%
! ATTAATGCAACAATCATAAG+AGG + chr7_2:75566636-75566655 None:intergenic 25.0%
! ATCTGAAAACAATAACAATG+GGG + chr7_2:75566756-75566775 None:intergenic 25.0%
! CATCTGAAAACAATAACAAT+GGG + chr7_2:75566757-75566776 None:intergenic 25.0%
! TCATCTGAAAACAATAACAA+TGG + chr7_2:75566758-75566777 None:intergenic 25.0%
! TAACTAAAGATTGAAATTGC+TGG - chr7_2:75567068-75567087 Msa1077030:intron 25.0%
! GATTTGATCTATAATTTCTC+TGG + chr7_2:75567133-75567152 None:intergenic 25.0%
!! TATGCTTTATTATTGGGATT+TGG + chr7_2:75567457-75567476 None:intergenic 25.0%
!!! GCGATTTTATGCTTTATTAT+TGG + chr7_2:75567464-75567483 None:intergenic 25.0%
!!! CTCATTTTTACAATAGCTTA+GGG + chr7_2:75567557-75567576 None:intergenic 25.0%
!!! TCTCATTTTTACAATAGCTT+AGG + chr7_2:75567558-75567577 None:intergenic 25.0%
! AAGCTATTGTAAAAATGAGA+AGG - chr7_2:75567558-75567577 Msa1077030:intron 25.0%
! AGCTATTGTAAAAATGAGAA+GGG - chr7_2:75567559-75567578 Msa1077030:intron 25.0%
! TTATCCCTAAAAGTGAAATA+AGG + chr7_2:75567663-75567682 None:intergenic 25.0%
! TAAAGGAAAACAATCAACTA+AGG + chr7_2:75567689-75567708 None:intergenic 25.0%
!!! ATGCTTATTTCTATTTAGTC+AGG - chr7_2:75567773-75567792 Msa1077030:intron 25.0%
!!! TCATGTTTTGTTTTTGTTTG+TGG - chr7_2:75567892-75567911 Msa1077030:intron 25.0%
!!! CATGTTTTGTTTTTGTTTGT+GGG - chr7_2:75567893-75567912 Msa1077030:intron 25.0%
!! CTTTCAATTTTCAGTAACTA+TGG - chr7_2:75567937-75567956 Msa1077030:intron 25.0%
!! TAGAGAAAATACTGAAGTTT+TGG + chr7_2:75568066-75568085 None:intergenic 25.0%
! CATCATTGATCATATATTTG+AGG + chr7_2:75568169-75568188 None:intergenic 25.0%
! TGATAAGACCAAATTTGAAT+TGG - chr7_2:75568225-75568244 Msa1077030:intron 25.0%
!!! TTATTTTAAATTTGGGGTGT+TGG - chr7_2:75568286-75568305 Msa1077030:intron 25.0%
! TACTCATTGCAATATATCTT+AGG - chr7_2:75568369-75568388 Msa1077030:intron 25.0%
! TATCATGTTCTATTTGCAAA+TGG - chr7_2:75568494-75568513 Msa1077030:intron 25.0%
!!! TGTTTTTGTTTCTTCATCAT+TGG + chr7_2:75568615-75568634 None:intergenic 25.0%
! TGATAGAATTAATTACCTCT+TGG + chr7_2:75568656-75568675 None:intergenic 25.0%
! AGTTGTACAAACAAATAAAG+AGG + chr7_2:75568683-75568702 None:intergenic 25.0%
! GGAAAAAATATGTCAAATAC+AGG - chr7_2:75568924-75568943 Msa1077030:intron 25.0%
! TCAAATACAGGAAAAAGAAA+AGG - chr7_2:75568936-75568955 Msa1077030:intron 25.0%
! AACTGGAAACATGATAAAAA+GGG - chr7_2:75568963-75568982 Msa1077030:intron 25.0%
! CTGTATGATCTTTATAAATC+TGG - chr7_2:75569039-75569058 Msa1077030:CDS 25.0%
! TAAAGAAGTTGAATAACGTA+AGG + chr7_2:75569071-75569090 None:intergenic 25.0%
! ACGTTATTCAACTTCTTTAT+AGG - chr7_2:75569072-75569091 Msa1077030:five_prime_UTR 25.0%
!!! TCTGTTTTAGTGAAAATAGG+TGG - chr7_2:75565440-75565459 Msa1077030:three_prime_UTR 30.0%
ATCTTACTAGCATAAAACTG+AGG - chr7_2:75565505-75565524 Msa1077030:three_prime_UTR 30.0%
GCTAAGGCTTAATAATCAAA+TGG + chr7_2:75565649-75565668 None:intergenic 30.0%
!! AGATTGTTTAGCTCTAAAGA+AGG - chr7_2:75565931-75565950 Msa1077030:CDS 30.0%
AATAGAGTGATAGAAATTGG+AGG - chr7_2:75565980-75565999 Msa1077030:intron 30.0%
ACCCTTAACAACTTATATCT+TGG + chr7_2:75566407-75566426 None:intergenic 30.0%
TTGAATTTGAGTAGAAGAGT+CGG - chr7_2:75566446-75566465 Msa1077030:intron 30.0%
TGTTGCATTAATGTTAGTGT+TGG - chr7_2:75566644-75566663 Msa1077030:intron 30.0%
GTTGCATTAATGTTAGTGTT+GGG - chr7_2:75566645-75566664 Msa1077030:intron 30.0%
TTAGACTCTATCTGATGATT+AGG - chr7_2:75566679-75566698 Msa1077030:intron 30.0%
TCTGAAAACAATAACAATGG+GGG + chr7_2:75566755-75566774 None:intergenic 30.0%
! ATAGGTCACAATTAGTTTAG+TGG - chr7_2:75567198-75567217 Msa1077030:intron 30.0%
GGTAAAGTAATGGTTTGAAT+TGG - chr7_2:75567226-75567245 Msa1077030:intron 30.0%
ACTATTAGTAATGTGGCAAA+TGG - chr7_2:75567291-75567310 Msa1077030:intron 30.0%
ATAGTAGAAGAAAAAGGCAA+AGG + chr7_2:75567405-75567424 None:intergenic 30.0%
! GGAAAATTCTAAAAACTGAC+TGG + chr7_2:75567436-75567455 None:intergenic 30.0%
GCTATTGTAAAAATGAGAAG+GGG - chr7_2:75567560-75567579 Msa1077030:intron 30.0%
CTATTGTAAAAATGAGAAGG+GGG - chr7_2:75567561-75567580 Msa1077030:intron 30.0%
TATTGTAAAAATGAGAAGGG+GGG - chr7_2:75567562-75567581 Msa1077030:intron 30.0%
!!! CCAAGTATTTTGACATCTAT+CGG + chr7_2:75567638-75567657 None:intergenic 30.0%
CCATTCAACTACTAGATTAA+AGG + chr7_2:75567706-75567725 None:intergenic 30.0%
CCTTTAATCTAGTAGTTGAA+TGG - chr7_2:75567703-75567722 Msa1077030:intron 30.0%
TGTTGTATGTATCTATCACA+TGG - chr7_2:75567726-75567745 Msa1077030:intron 30.0%
!! CTTATTTCTATTTAGTCAGG+AGG - chr7_2:75567776-75567795 Msa1077030:intron 30.0%
TTGAAAGAGAGAAGATGTAA+GGG + chr7_2:75567924-75567943 None:intergenic 30.0%
ATTGAAAGAGAGAAGATGTA+AGG + chr7_2:75567925-75567944 None:intergenic 30.0%
TTATTGTTATGTTCTCTTGG+AGG + chr7_2:75568001-75568020 None:intergenic 30.0%
TGCTTATTGTTATGTTCTCT+TGG + chr7_2:75568004-75568023 None:intergenic 30.0%
AAGAGAACATAACAATAAGC+AGG - chr7_2:75568003-75568022 Msa1077030:intron 30.0%
CAATAAGCAGGAAAATGAAA+TGG - chr7_2:75568015-75568034 Msa1077030:intron 30.0%
AAAAAAGAAGGTAACAAACC+AGG + chr7_2:75568341-75568360 None:intergenic 30.0%
AATGGTATTATCACAATGCT+CGG - chr7_2:75568512-75568531 Msa1077030:intron 30.0%
AGGTAATCTTTGATTCTTGA+GGG + chr7_2:75568577-75568596 None:intergenic 30.0%
AAGGTAATCTTTGATTCTTG+AGG + chr7_2:75568578-75568597 None:intergenic 30.0%
TCAAAGATTACCTTTAAGTG+TGG - chr7_2:75568584-75568603 Msa1077030:intron 30.0%
TGATGAAGAAACAAAAACAG+AGG - chr7_2:75568616-75568635 Msa1077030:intron 30.0%
GATGAAGAAACAAAAACAGA+GGG - chr7_2:75568617-75568636 Msa1077030:intron 30.0%
TGTACAAACAAATAAAGAGG+AGG + chr7_2:75568680-75568699 None:intergenic 30.0%
! AGTGAAGGTCGATTTAAAAA+TGG - chr7_2:75568846-75568865 Msa1077030:intron 30.0%
AATACAGGAAAAAGAAAAGG+AGG - chr7_2:75568939-75568958 Msa1077030:intron 30.0%
CAACTGGAAACATGATAAAA+AGG - chr7_2:75568962-75568981 Msa1077030:intron 30.0%
AACTAATGCACGAAATAGAT+GGG - chr7_2:75569184-75569203 Msa1077030:five_prime_UTR 30.0%
! GGTTTGAGACTTAGATTAGA+TGG - chr7_2:75565461-75565480 Msa1077030:three_prime_UTR 35.0%
TGAAGTCAATTCCTTCCTAT+AGG + chr7_2:75565816-75565835 None:intergenic 35.0%
CATAAGCATGGTATGATAGT+AGG - chr7_2:75565855-75565874 Msa1077030:intron 35.0%
!!! GGTTTTAAATAGACGAAGGA+TGG - chr7_2:75566176-75566195 Msa1077030:intron 35.0%
ACAGGTTAACAAACGAACAA+TGG - chr7_2:75566252-75566271 Msa1077030:intron 35.0%
TGTCAACTGATTATTCTGAC+AGG - chr7_2:75566311-75566330 Msa1077030:intron 35.0%
TATCCAACTTATCCATCTGT+CGG + chr7_2:75566504-75566523 None:intergenic 35.0%
TCTTCTTAACATGGATAAGC+CGG + chr7_2:75566536-75566555 None:intergenic 35.0%
AACACGTACACAAAGGTAAA+AGG - chr7_2:75566777-75566796 Msa1077030:intron 35.0%
TCCATAGCAGAGTTATTCAT+CGG + chr7_2:75566805-75566824 None:intergenic 35.0%
AAGGTAGCTCAAGTATACTT+GGG + chr7_2:75567006-75567025 None:intergenic 35.0%
TAAGGTAGCTCAAGTATACT+TGG + chr7_2:75567007-75567026 None:intergenic 35.0%
GTTTATTCAAATTCCAACGG+TGG - chr7_2:75567035-75567054 Msa1077030:intron 35.0%
! ACAATTAGTTTAGTGGTGGA+TGG - chr7_2:75567205-75567224 Msa1077030:intron 35.0%
ATGGTTTGAATTGGAGTTGA+TGG - chr7_2:75567235-75567254 Msa1077030:intron 35.0%
! TGGAAAATCATATGCCCTTT+TGG - chr7_2:75567311-75567330 Msa1077030:intron 35.0%
ATGAGTCATAAGGTCCAAAA+GGG + chr7_2:75567328-75567347 None:intergenic 35.0%
AATGAGTCATAAGGTCCAAA+AGG + chr7_2:75567329-75567348 None:intergenic 35.0%
! TGGACCTTATGACTCATTTT+AGG - chr7_2:75567331-75567350 Msa1077030:intron 35.0%
! GGACCTTATGACTCATTTTA+GGG - chr7_2:75567332-75567351 Msa1077030:intron 35.0%
AGACCCTAAAATGAGTCATA+AGG + chr7_2:75567338-75567357 None:intergenic 35.0%
! ACAAGTTCTTGTCCATCTTT+TGG - chr7_2:75567364-75567383 Msa1077030:intron 35.0%
CCGATAGATGTCAAAATACT+TGG - chr7_2:75567635-75567654 Msa1077030:intron 35.0%
!! TGGCACCTTATTTCACTTTT+AGG - chr7_2:75567655-75567674 Msa1077030:intron 35.0%
!! GGCACCTTATTTCACTTTTA+GGG - chr7_2:75567656-75567675 Msa1077030:intron 35.0%
TGAAAGAGAGAAGATGTAAG+GGG + chr7_2:75567923-75567942 None:intergenic 35.0%
TACAAGAAGAAACAAGCTCA+CGG - chr7_2:75567968-75567987 Msa1077030:intron 35.0%
AGGAAAATGAAATGGACATC+AGG - chr7_2:75568023-75568042 Msa1077030:intron 35.0%
AATGGACATCAGGAAGATTA+TGG - chr7_2:75568033-75568052 Msa1077030:intron 35.0%
TTATGGTAAGCATATTCACC+TGG - chr7_2:75568320-75568339 Msa1077030:intron 35.0%
CAAAAAGGTTGAAGATAGGA+AGG - chr7_2:75568419-75568438 Msa1077030:intron 35.0%
GAATAAGAGCAGATGAAACA+CGG + chr7_2:75568551-75568570 None:intergenic 35.0%
GGTAATCTTTGATTCTTGAG+GGG + chr7_2:75568576-75568595 None:intergenic 35.0%
GCACAAGTGGTACATATATA+AGG + chr7_2:75568723-75568742 None:intergenic 35.0%
!!! GTATGATTCTAGGACGTTTT+GGG - chr7_2:75568751-75568770 Msa1077030:intron 35.0%
!!! TATGATTCTAGGACGTTTTG+GGG - chr7_2:75568752-75568771 Msa1077030:intron 35.0%
! AGAGGTTTGAAGTTAAGTGA+AGG - chr7_2:75568831-75568850 Msa1077030:intron 35.0%
TGGAAACATGATAAAAAGGG+TGG - chr7_2:75568966-75568985 Msa1077030:intron 35.0%
AAACATGATAAAAAGGGTGG+TGG - chr7_2:75568969-75568988 Msa1077030:intron 35.0%
!!! GACCTTCTTTTTTTGACGTT+TGG - chr7_2:75569155-75569174 Msa1077030:five_prime_UTR 35.0%
CACCAAACGTCAAAAAAAGA+AGG + chr7_2:75569160-75569179 None:intergenic 35.0%
GAACTAATGCACGAAATAGA+TGG - chr7_2:75569183-75569202 Msa1077030:five_prime_UTR 35.0%
ACTAGCATAAAACTGAGGAG+AGG - chr7_2:75565510-75565529 Msa1077030:three_prime_UTR 40.0%
TTGTTGAAGTGTGTGTACTG+TGG + chr7_2:75565561-75565580 None:intergenic 40.0%
GTCTGCTTCCATTAGTAGAA+TGG - chr7_2:75565582-75565601 Msa1077030:CDS 40.0%
TCTACAATCTACAGACGCTA+AGG + chr7_2:75565665-75565684 None:intergenic 40.0%
ATTCCTTCCTATAGGCCTAT+TGG + chr7_2:75565808-75565827 None:intergenic 40.0%
CTGTCAATCCATCCAGAATA+TGG + chr7_2:75566236-75566255 None:intergenic 40.0%
!! CATATTCTGGATGGATTGAC+AGG - chr7_2:75566234-75566253 Msa1077030:intron 40.0%
TTTGAGTAGAAGAGTCGGAA+AGG - chr7_2:75566451-75566470 Msa1077030:intron 40.0%
! TAGAAGAGTCGGAAAGGTAT+TGG - chr7_2:75566457-75566476 Msa1077030:intron 40.0%
AACTTATCCATCTGTCGGTA+AGG + chr7_2:75566499-75566518 None:intergenic 40.0%
TTACCGACAGATGGATAAGT+TGG - chr7_2:75566498-75566517 Msa1077030:CDS 40.0%
GTGAGGTCTACTTATTTCAG+TGG + chr7_2:75566733-75566752 None:intergenic 40.0%
AAACAATAACAATGGGGGTG+AGG + chr7_2:75566750-75566769 None:intergenic 40.0%
TCAGATGAACACGTACACAA+AGG - chr7_2:75566770-75566789 Msa1077030:intron 40.0%
TTACAAGCTTAAACCACCGT+TGG + chr7_2:75567051-75567070 None:intergenic 40.0%
! GGTCACAATTAGTTTAGTGG+TGG - chr7_2:75567201-75567220 Msa1077030:intron 40.0%
!! AGTGGTGGATGGTAAAGTAA+TGG - chr7_2:75567216-75567235 Msa1077030:intron 40.0%
!! GTTTGAATTGGAGTTGATGG+TGG - chr7_2:75567238-75567257 Msa1077030:intron 40.0%
!! ATGTGGTTGGTGTTGAGTAA+CGG - chr7_2:75567265-75567284 Msa1077030:intron 40.0%
ACGGGTCACTATTAGTAATG+TGG - chr7_2:75567284-75567303 Msa1077030:intron 40.0%
CGAGATAGAAGTCCAAAAGA+TGG + chr7_2:75567379-75567398 None:intergenic 40.0%
GTCGTAGTACATGTATGAAG+AGG - chr7_2:75567813-75567832 Msa1077030:intron 40.0%
AGCGCAAAAAGGTTGAAGAT+AGG - chr7_2:75568415-75568434 Msa1077030:intron 40.0%
GAAGAAACAAAAACAGAGGG+AGG - chr7_2:75568620-75568639 Msa1077030:intron 40.0%
TCCTAGAATCATACGCTGAA+AGG + chr7_2:75568745-75568764 None:intergenic 40.0%
!!! CGTATGATTCTAGGACGTTT+TGG - chr7_2:75568750-75568769 Msa1077030:intron 40.0%
!!! ATGATTCTAGGACGTTTTGG+GGG - chr7_2:75568753-75568772 Msa1077030:intron 40.0%
GAAAAAGAAAAGGAGGCAAC+TGG - chr7_2:75568946-75568965 Msa1077030:intron 40.0%
! TAAAAAGGGTGGTGGTAAGA+AGG - chr7_2:75568977-75568996 Msa1077030:intron 40.0%
! GAGAGGTGAGCTTTTCTGAT+TGG - chr7_2:75565527-75565546 Msa1077030:exon 45.0%
CTGCAACGCCATTCTACTAA+TGG + chr7_2:75565593-75565612 None:intergenic 45.0%
CATTAGTAGAATGGCGTTGC+AGG - chr7_2:75565591-75565610 Msa1077030:CDS 45.0%
AAGTTGGATATCCTCACGTC+CGG - chr7_2:75566514-75566533 Msa1077030:CDS 45.0%
GCCGATGAATAACTCTGCTA+TGG - chr7_2:75566801-75566820 Msa1077030:intron 45.0%
! GCGGTTGATGTTTGAGCAAT+AGG - chr7_2:75567180-75567199 Msa1077030:intron 45.0%
!! GAGTTGATGGTGGTTGAATG+TGG - chr7_2:75567248-75567267 Msa1077030:intron 45.0%
!! TGATGGTGGTTGAATGTGGT+TGG - chr7_2:75567252-75567271 Msa1077030:intron 45.0%
!! TGTGGTTGGTGTTGAGTAAC+GGG - chr7_2:75567266-75567285 Msa1077030:intron 45.0%
TAGGCAACTCGCATATGACA+TGG - chr7_2:75568388-75568407 Msa1077030:intron 45.0%
! GACATGGAAAGAGCGCAAAA+AGG - chr7_2:75568404-75568423 Msa1077030:intron 45.0%
! GATAGGAAGGTTGTTTCCCT+TGG - chr7_2:75568432-75568451 Msa1077030:intron 45.0%
ATTGGTCGTGCCACACTTAA+AGG + chr7_2:75568597-75568616 None:intergenic 45.0%
GGAGGAAAAAATGCTCCAAG+AGG - chr7_2:75568638-75568657 Msa1077030:intron 45.0%
GCCTTTCAGCGTATGATTCT+AGG - chr7_2:75568741-75568760 Msa1077030:intron 45.0%
AGCAGCAGTAAAAAACCAGC+TGG - chr7_2:75568789-75568808 Msa1077030:intron 45.0%
!! TCTGGTTTGTGTTTTCCAGC+TGG + chr7_2:75568807-75568826 None:intergenic 45.0%
AGCTGGAAAACACAAACCAG+AGG - chr7_2:75568806-75568825 Msa1077030:intron 45.0%
AAACACAAACCAGAGGACAG+AGG - chr7_2:75568813-75568832 Msa1077030:intron 45.0%
AACTTCAAACCTCTGTCCTC+TGG + chr7_2:75568825-75568844 None:intergenic 45.0%
TTGAAGTCAACACCCACAAG+AGG - chr7_2:75568891-75568910 Msa1077030:intron 45.0%
!! ATTATAAGATAATAAAAATT+AGG + chr7_2:75565963-75565982 None:intergenic 5.0%
TCTAACGCCTTACCGACAGA+TGG - chr7_2:75566489-75566508 Msa1077030:CDS 50.0%
AAGAAACAAGCTCACGGACG+TGG - chr7_2:75567974-75567993 Msa1077030:intron 50.0%
! AGGAAGGTTGTTTCCCTTGG+TGG - chr7_2:75568435-75568454 Msa1077030:intron 50.0%
! GGAAGGTTGTTTCCCTTGGT+GGG - chr7_2:75568436-75568455 Msa1077030:intron 50.0%
! CATACGCTGAAAGGCACAAG+TGG + chr7_2:75568736-75568755 None:intergenic 50.0%
!!! TCTAGGACGTTTTGGGGGAA+AGG - chr7_2:75568758-75568777 Msa1077030:intron 50.0%
CCAGTGTCATGACCTCTTGT+GGG + chr7_2:75568906-75568925 None:intergenic 50.0%
TCCAGTGTCATGACCTCTTG+TGG + chr7_2:75568907-75568926 None:intergenic 50.0%
GTGTGTGTGTGTGCATGCTG+CGG - chr7_2:75565782-75565801 Msa1077030:CDS 55.0%
CGGCCAATAGGCCTATAGGA+AGG - chr7_2:75565802-75565821 Msa1077030:intron 55.0%
ACATGGATAAGCCGGACGTG+AGG + chr7_2:75566528-75566547 None:intergenic 55.0%
! GGTTGTTTCCCTTGGTGGGA+AGG - chr7_2:75568440-75568459 Msa1077030:intron 55.0%
TTTCCCTTGGTGGGAAGGTG+AGG - chr7_2:75568445-75568464 Msa1077030:intron 55.0%
AGACCTCACCTTCCCACCAA+GGG + chr7_2:75568451-75568470 None:intergenic 55.0%
TAGACCTCACCTTCCCACCA+AGG + chr7_2:75568452-75568471 None:intergenic 55.0%
!!! GGACGTTTTGGGGGAAAGGA+TGG - chr7_2:75568762-75568781 Msa1077030:intron 55.0%
!!! CGTTTTGGGGGAAAGGATGG+TGG - chr7_2:75568765-75568784 Msa1077030:intron 55.0%
CCCACAAGAGGTCATGACAC+TGG - chr7_2:75568903-75568922 Msa1077030:intron 55.0%
GTGTGCATGCTGCGGCCAAT+AGG - chr7_2:75565790-75565809 Msa1077030:intron 60.0%
GCTGCGGCCAATAGGCCTAT+AGG - chr7_2:75565798-75565817 Msa1077030:intron 60.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 75565344 75569207 75565344 ID=Msa1077030;Name=Msa1077030
chr7_2 mRNA 75565344 75569207 75565344 ID=Msa1077030-mRNA-1;Parent=Msa1077030;Name=Msa1077030-mRNA-1;_AED=0.15;_eAED=0.15;_QI=136|0.75|1|1|0.75|0.8|5|194|198
chr7_2 exon 75565344 75565801 75565344 ID=Msa1077030-mRNA-1:exon:18037;Parent=Msa1077030-mRNA-1
chr7_2 exon 75565892 75565978 75565892 ID=Msa1077030-mRNA-1:exon:18036;Parent=Msa1077030-mRNA-1
chr7_2 exon 75566090 75566160 75566090 ID=Msa1077030-mRNA-1:exon:18035;Parent=Msa1077030-mRNA-1
chr7_2 exon 75566478 75566600 75566478 ID=Msa1077030-mRNA-1:exon:18034;Parent=Msa1077030-mRNA-1
chr7_2 exon 75569020 75569207 75569020 ID=Msa1077030-mRNA-1:exon:18033;Parent=Msa1077030-mRNA-1
chr7_2 five_prime_UTR 75569072 75569207 75569072 ID=Msa1077030-mRNA-1:five_prime_utr;Parent=Msa1077030-mRNA-1
chr7_2 CDS 75569020 75569071 75569020 ID=Msa1077030-mRNA-1:cds;Parent=Msa1077030-mRNA-1
chr7_2 CDS 75566478 75566600 75566478 ID=Msa1077030-mRNA-1:cds;Parent=Msa1077030-mRNA-1
chr7_2 CDS 75566090 75566160 75566090 ID=Msa1077030-mRNA-1:cds;Parent=Msa1077030-mRNA-1
chr7_2 CDS 75565892 75565978 75565892 ID=Msa1077030-mRNA-1:cds;Parent=Msa1077030-mRNA-1
chr7_2 CDS 75565538 75565801 75565538 ID=Msa1077030-mRNA-1:cds;Parent=Msa1077030-mRNA-1
chr7_2 three_prime_UTR 75565344 75565537 75565344 ID=Msa1077030-mRNA-1:three_prime_utr;Parent=Msa1077030-mRNA-1
Gene Sequence

>Msa1077030

ATGGAACGTGAAACATTGAGACACGATCTTACTAGCATAAAACTGAGGAGAGTAACTATGGGAAAGATGTACAAGAAGAAACAAGCTCACGGACGTGGACCTCCAAGAGAACATAACAATAAGCAGGAAAATGAAATGGACATCAGGAAGATTATGGAAGACGTCCAAAACTTCAGCAACTCGCATATGACATGGAAAGAGCGCAAAAAGGTTGAAGATAGGAAGGTTGTTTCCCTTGGTGGGAAGCCCCTCAAGAATCAAAGATTACCTTTAAGTGTGGCACGACCAATGATGAAGAAACAAAAACAGAGGGAGGAAAAAATGCTCCAAGAGCGTATGATTCTAGGACGTTTTGGGGGAAAGGATGGTGGTAGCAGCAGTAAAAAACCAGCTGGAAAACACAAACCAGAGGACAGAGGTTTGAAGTTAAGTGAAGGTCGATTTAAAAATGGCATACTCGACGTGAAGCATTTGTTGAAGTCAACACCCACAAGAGGTCATGACACTGGAAAAAATATGTCAAATACAGGAAAAAGAAAAGGAGGCAACTGGAAACATGATAAAAAGGGTGGTGGTAAGAAGGATCAAATGTTTTAG

Protein sequence

>Msa1077030

MERETLRHDLTSIKLRRVTMGKMYKKKQAHGRGPPREHNNKQENEMDIRKIMEDVQNFSNSHMTWKERKKVEDRKVVSLGGKPLKNQRLPLSVARPMMKKQKQREEKMLQERMILGRFGGKDGGSSSKKPAGKHKPEDRGLKLSEGRFKNGILDVKHLLKSTPTRGHDTGKNMSNTGKRKGGNWKHDKKGGGKKDQMF*