AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene002258

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene002258.t1 MTR_2g009810 90.704 355 18 1 1 340 52 406 0.0 663
MS.gene002258.t1 MTR_2g009820 87.097 248 13 3 112 340 7 254 3.28e-151 425
MS.gene002258.t1 MTR_5g031190 49.857 349 158 3 8 340 11 358 3.55e-121 353
MS.gene002258.t1 MTR_5g031250 49.711 346 157 3 11 340 14 358 1.21e-117 344
MS.gene002258.t1 MTR_5g031360 49.570 349 159 3 8 340 13 360 1.55e-117 344
MS.gene002258.t1 MTR_5g031230 50.862 348 150 5 11 340 14 358 2.53e-117 343
MS.gene002258.t1 MTR_5g031210 50.289 346 155 3 11 340 14 358 1.91e-115 338
MS.gene002258.t1 MTR_5g031310 49.711 346 157 3 11 340 15 359 2.46e-115 338
MS.gene002258.t1 MTR_5g031305 50.000 348 153 5 11 340 15 359 6.41e-115 337
MS.gene002258.t1 MTR_5g031180 50.143 349 157 3 8 340 11 358 6.11e-114 335
MS.gene002258.t1 MTR_5g031390 48.433 351 154 4 11 340 14 358 7.04e-114 335
MS.gene002258.t1 MTR_5g031300 48.424 349 163 3 8 340 12 359 2.78e-113 333
MS.gene002258.t1 MTR_4g115300 49.425 348 155 5 11 340 14 358 5.51e-113 332
MS.gene002258.t1 MTR_5g031430 48.851 348 157 4 11 340 14 358 1.78e-111 328
MS.gene002258.t1 MTR_8g068190 49.711 346 157 3 11 340 14 358 2.30e-110 326
MS.gene002258.t1 MTR_8g092630 51.884 345 148 4 11 339 71 413 9.05e-109 323
MS.gene002258.t1 MTR_1g025950 47.522 343 162 3 13 338 15 356 3.31e-103 307
MS.gene002258.t1 MTR_1g107425 42.733 344 180 3 11 338 12 354 1.33e-97 293
MS.gene002258.t1 MTR_1g107425 45.113 266 130 2 11 261 12 276 2.67e-77 239
MS.gene002258.t1 MTR_5g031250 48.908 229 101 2 11 224 14 241 1.94e-74 231
MS.gene002258.t1 MTR_5g031290 56.250 112 48 1 230 340 80 191 1.37e-31 117
MS.gene002258.t1 MTR_5g031290 52.857 70 32 1 8 76 11 80 2.62e-18 82.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene002258.t1 AT1G72680 69.492 354 92 2 2 340 3 355 0.0 525
MS.gene002258.t1 AT2G21890 49.138 348 155 4 11 339 8 352 1.17e-110 327
MS.gene002258.t1 AT4G39330 48.696 345 160 3 11 339 14 357 1.44e-110 326
MS.gene002258.t1 AT4G37970 46.686 347 168 3 9 339 13 358 1.63e-109 323
MS.gene002258.t1 AT2G21730 48.991 347 158 4 11 339 8 353 1.81e-109 324
MS.gene002258.t1 AT4G37980 46.705 349 169 3 8 340 7 354 1.98e-102 305
MS.gene002258.t1 AT4G37990 45.272 349 174 3 8 340 7 354 2.21e-98 295
MS.gene002258.t1 AT3G19450 42.535 355 186 4 1 338 1 354 5.65e-89 271
MS.gene002258.t1 AT4G39330 46.897 290 137 3 11 284 14 302 2.70e-86 263
MS.gene002258.t1 AT4G37970 45.390 282 137 3 9 275 13 292 3.09e-83 254
MS.gene002258.t1 AT4G34230 42.690 342 179 3 13 338 13 353 3.17e-83 256
MS.gene002258.t1 AT4G34230 42.690 342 179 3 13 338 13 353 3.98e-83 256
MS.gene002258.t1 AT4G37980 46.154 273 131 2 8 265 7 278 1.91e-77 239
MS.gene002258.t1 AT4G37970 46.552 232 108 2 9 225 13 243 1.94e-71 223
MS.gene002258.t1 AT4G37970 46.552 232 108 2 9 225 13 243 2.90e-71 222

Find 99 sgRNAs with CRISPR-Local

Find 151 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTCATATGGCAGTAAAATT+TGG 0.150937 2.3:+73222501 MS.gene002258:intron
ATCATAATCAACACAATTAA+AGG 0.227997 2.3:-73222118 None:intergenic
ATTGGAATCAATTCTATATC+TGG 0.245064 2.3:-73223097 None:intergenic
ATGCAACATTACCTAAATTA+AGG 0.258422 2.3:-73222901 None:intergenic
GAGGAGGCGCTGAGCTTTCT+TGG 0.260212 2.3:+73222576 MS.gene002258:CDS
TTGTTATGCTGATGTAATTA+TGG 0.279535 2.3:+73221805 MS.gene002258:CDS
GTAAAATTTGGGAAGGCATT+TGG 0.314204 2.3:+73222513 MS.gene002258:intron
TTACCTAAATTAAGGCTTGC+AGG 0.324389 2.3:-73222893 None:intergenic
TCTGAAGATATCTGGTGTTC+TGG 0.326816 2.3:+73222835 MS.gene002258:CDS
TCTGGTGTTCTGGCCTTAGT+TGG 0.332424 2.3:+73222845 MS.gene002258:CDS
AGCCCTGCAAGCCTTAATTT+AGG 0.333583 2.3:+73222890 MS.gene002258:CDS
GATATAGAATTGATTCCAAT+TGG 0.351587 2.3:+73223100 MS.gene002258:CDS
TGTACCACCTGCAACACTTC+CGG 0.359100 2.3:-73223026 None:intergenic
ACCTTGAAACGCTGGACATT+AGG 0.363094 2.3:-73221994 None:intergenic
CTTATCAGACACGAGATTGC+TGG 0.363214 2.3:+73221952 MS.gene002258:intron
GTCATATGGCAGTAAAATTT+GGG 0.370755 2.3:+73222502 MS.gene002258:intron
GATTAGATGAAACAACAAAT+TGG 0.376372 2.3:-73222605 None:intergenic
GCAGGTCCTTTGCTTTGTGC+TGG 0.377353 2.3:+73222397 MS.gene002258:CDS
ATGTCACTTCTGAAGATATC+TGG 0.387083 2.3:+73222827 MS.gene002258:CDS
GCAGGATCAAGAACTGTTGC+CGG 0.416477 2.3:+73223007 MS.gene002258:intron
TTTATAATTGACACGGCATC+GGG 0.416518 2.3:+73222782 MS.gene002258:CDS
GGGCTGAATTTGACTTCACT+TGG 0.427549 2.3:-73222872 None:intergenic
GCTTCGTTTGAGTACCCAAT+TGG 0.431391 2.3:-73223115 None:intergenic
ACTGTTGCCGGAAGTGTTGC+AGG 0.432996 2.3:+73223019 MS.gene002258:CDS
CTGGTGTTCTGGCCTTAGTT+GGG 0.434067 2.3:+73222846 MS.gene002258:CDS
ACAACTTACCCCGGCACAAC+AGG 0.440053 2.3:-73221857 None:intergenic
TCCTAATGTCCAGCGTTTCA+AGG 0.445977 2.3:+73221993 MS.gene002258:CDS
TTCAAAGTATCCTGTTGTGC+CGG 0.454354 2.3:+73221847 MS.gene002258:CDS
TCAAAGTATCCTGTTGTGCC+GGG 0.460698 2.3:+73221848 MS.gene002258:CDS
TTGGTGAAGATTGCCTTGCA+TGG 0.462156 2.3:+73221231 MS.gene002258:CDS
ATTTCTCTAATTCTACTTGA+GGG 0.465586 2.3:-73223197 None:intergenic
ACACGAGATTGCTGGGGTTG+TGG 0.469150 2.3:+73221960 MS.gene002258:CDS
GCTGGGGTTGTGGCAAAGGT+TGG 0.470558 2.3:+73221970 MS.gene002258:CDS
ATTCATATTATGTCGCATCA+TGG 0.471650 2.3:-73222437 None:intergenic
GTTGACTTCTGTGCTGCAAA+CGG 0.474283 2.3:+73223067 MS.gene002258:CDS
TTATCAGACACGAGATTGCT+GGG 0.475272 2.3:+73221953 MS.gene002258:intron
AGCTATCCTTTAGCTTCGGC+AGG 0.476804 2.3:+73222379 MS.gene002258:CDS
TGGTGATTGCTAAGGGCTCT+CGG 0.477999 2.3:+73221743 MS.gene002258:intron
TTGACTTCTGTGCTGCAAAC+GGG 0.481169 2.3:+73223068 MS.gene002258:CDS
TAAAAGCTATCCTTTAGCTT+CGG 0.482887 2.3:+73222375 MS.gene002258:CDS
CACCTTCGATTGAATCTGTA+AGG 0.488966 2.3:-73221284 None:intergenic
TCAGTAAGGACGTGAAATAT+CGG 0.490170 2.3:+73223152 MS.gene002258:CDS
GGCATTTGGTTTGCGTGTAA+CGG 0.491251 2.3:+73222527 MS.gene002258:CDS
GGTGATTGCTAAGGGCTCTC+GGG 0.491662 2.3:+73221744 MS.gene002258:intron
AGGTGGTACAAAAGAAATAC+AGG 0.497345 2.3:+73223039 MS.gene002258:CDS
TCTTGAGAGGGTCGTCAGTA+AGG 0.501409 2.3:+73223138 MS.gene002258:CDS
GCAGGCATTAGCTAAAACAT+TGG 0.502530 2.3:+73222757 MS.gene002258:intron
TATGATGGTACAATTACAAA+AGG 0.507275 2.3:+73222135 MS.gene002258:CDS
TTCACTTGGGAACCCAACTA+AGG 0.508145 2.3:-73222858 None:intergenic
TTTAATTGTGTTGATTATGA+TGG 0.517784 2.3:+73222120 MS.gene002258:CDS
TTGGAATCAATTCTATATCT+GGG 0.520067 2.3:-73223096 None:intergenic
AAAGGACCTGCCGAAGCTAA+AGG 0.522850 2.3:-73222385 None:intergenic
GGACTTACATCAACTCGTGC+AGG 0.522881 2.3:+73222037 MS.gene002258:CDS
AAAGGTGTAAACTGATCCCT+TGG 0.525198 2.3:-73222100 None:intergenic
ATCTTCAGAAGTGACATGTA+AGG 0.525421 2.3:-73222821 None:intergenic
CATCTCTTGCTGCCCATGCA+AGG 0.525887 2.3:-73221244 None:intergenic
TTCAAGGTTGGTGACCATGT+TGG 0.531246 2.3:+73222009 MS.gene002258:CDS
CACTAGTATGTCAAAGAAAG+AGG 0.532272 2.3:+73222557 MS.gene002258:CDS
CTAGAAATTCATTGTGCCAA+GGG 0.534931 2.3:+73222084 MS.gene002258:CDS
TACCTAAATTAAGGCTTGCA+GGG 0.536529 2.3:-73222892 None:intergenic
ATATAGAATTGATTCCAATT+GGG 0.538586 2.3:+73223101 MS.gene002258:CDS
AGTGACATGTAAGGATCAAA+CGG 0.538848 2.3:-73222812 None:intergenic
AATGTCCAGCGTTTCAAGGT+TGG 0.539954 2.3:+73221997 MS.gene002258:CDS
GATTGCTGGGGTTGTGGCAA+AGG 0.541441 2.3:+73221966 MS.gene002258:CDS
CGCCTTACAGATTCAATCGA+AGG 0.541584 2.3:+73221282 MS.gene002258:CDS
GGCTGAATTTGACTTCACTT+GGG 0.543028 2.3:-73222871 None:intergenic
TTCATATTATGTCGCATCAT+GGG 0.544385 2.3:-73222436 None:intergenic
TACAAAAGAAATACAGGAGA+TGG 0.547882 2.3:+73223045 MS.gene002258:CDS
TGGTGAAGATTGCCTTGCAT+GGG 0.548223 2.3:+73221232 MS.gene002258:CDS
TATTTCTCTAATTCTACTTG+AGG 0.557797 2.3:-73223198 None:intergenic
GTTGGTGACCATGTTGGAGT+GGG 0.558085 2.3:+73222015 MS.gene002258:CDS
CTTCAATTGTAGTAAATGAA+AGG 0.559479 2.3:+73222169 MS.gene002258:CDS
GTGACATGTAAGGATCAAAC+GGG 0.563218 2.3:-73222811 None:intergenic
AGAATAGCTATGAGTTCTGA+AGG 0.570846 2.3:+73221206 None:intergenic
CATCTAATCAAGAAGAGATG+AGG 0.579627 2.3:+73222619 MS.gene002258:CDS
CGACATAATATGAATCAACC+TGG 0.580130 2.3:+73222445 MS.gene002258:CDS
GTGATTCCAGCACAAAGCAA+AGG 0.590358 2.3:-73222403 None:intergenic
GGTCACCAACCTTGAAACGC+TGG 0.591766 2.3:-73222002 None:intergenic
TGGGCAGCAAGAGATGCATC+TGG 0.593361 2.3:+73221251 MS.gene002258:CDS
ACTAGAAATTCATTGTGCCA+AGG 0.594999 2.3:+73222083 MS.gene002258:CDS
ATCTAATCAAGAAGAGATGA+GGG 0.596139 2.3:+73222620 MS.gene002258:CDS
GGTTGGTGACCATGTTGGAG+TGG 0.596675 2.3:+73222014 MS.gene002258:CDS
ACTCAAACGAAGCTCTTGAG+AGG 0.609853 2.3:+73223125 MS.gene002258:CDS
GACTTACATCAACTCGTGCA+GGG 0.614119 2.3:+73222038 MS.gene002258:CDS
ATTATGGCAAGGAATAAACA+TGG 0.618473 2.3:+73221821 MS.gene002258:CDS
TTATGGCAAGGAATAAACAT+GGG 0.622219 2.3:+73221822 MS.gene002258:CDS
TATGGCAGTAAAATTTGGGA+AGG 0.622661 2.3:+73222506 MS.gene002258:intron
GATGGTACAATTACAAAAGG+AGG 0.626222 2.3:+73222138 MS.gene002258:CDS
TGTAAGTCCCCACTCCAACA+TGG 0.635422 2.3:-73222023 None:intergenic
CAAAGTATCCTGTTGTGCCG+GGG 0.639115 2.3:+73221849 MS.gene002258:CDS
TATGTTAAAATTACACACTG+TGG 0.642017 2.3:+73221779 MS.gene002258:CDS
CTCAAACGAAGCTCTTGAGA+GGG 0.656152 2.3:+73223126 MS.gene002258:CDS
TTGGTGACCATGTTGGAGTG+GGG 0.671187 2.3:+73222016 MS.gene002258:CDS
TATGGCAAGGAATAAACATG+GGG 0.673434 2.3:+73221823 MS.gene002258:CDS
TAGTATGTCAAAGAAAGAGG+AGG 0.682298 2.3:+73222560 MS.gene002258:CDS
ATGCTGATGTAATTATGGCA+AGG 0.694786 2.3:+73221810 MS.gene002258:CDS
TATCAGACACGAGATTGCTG+GGG 0.696618 2.3:+73221954 MS.gene002258:intron
GCTATGAGTTCTGAAGGTGT+TGG 0.722313 2.3:+73221212 None:intergenic
GTTGCCGGAAGTGTTGCAGG+TGG 0.789484 2.3:+73223022 MS.gene002258:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAAACTCATTTTATTTCA+AGG + chr2.3:73221559-73221578 MS.gene002258:intron 15.0%
!!! GTTTTTTTTATCTAAAGTAA+TGG + chr2.3:73222724-73222743 MS.gene002258:intron 15.0%
!!! TTCATAACTTCTTTTATATT+TGG + chr2.3:73222320-73222339 MS.gene002258:intron 15.0%
!!! TTTTTTGGAAAAATTTAACA+TGG - chr2.3:73221699-73221718 None:intergenic 15.0%
!! ATCATAATCAACACAATTAA+AGG - chr2.3:73222121-73222140 None:intergenic 20.0%
!! TAATAAATTTCAGCAAGATA+AGG - chr2.3:73222247-73222266 None:intergenic 20.0%
!!! ATATAGAATTGATTCCAATT+GGG + chr2.3:73223101-73223120 MS.gene002258:CDS 20.0%
!!! ATTGGATTTTATAATTGACA+CGG + chr2.3:73222775-73222794 MS.gene002258:CDS 20.0%
!!! TTTAATTGTGTTGATTATGA+TGG + chr2.3:73222120-73222139 MS.gene002258:CDS 20.0%
! AAAGAAAAACACAGATAAGT+AGG - chr2.3:73221929-73221948 None:intergenic 25.0%
! AAATCCTGACAATATGATAA+TGG + chr2.3:73221723-73221742 MS.gene002258:intron 25.0%
! ATCTATATTGTCGATGTAAA+GGG + chr2.3:73221415-73221434 MS.gene002258:intron 25.0%
! ATGAAAGGTAAACTTAATAG+AGG + chr2.3:73222184-73222203 MS.gene002258:intron 25.0%
! ATGCAACATTACCTAAATTA+AGG - chr2.3:73222904-73222923 None:intergenic 25.0%
! ATTGGAATCAATTCTATATC+TGG - chr2.3:73223100-73223119 None:intergenic 25.0%
! CTTCAATTGTAGTAAATGAA+AGG + chr2.3:73222169-73222188 MS.gene002258:CDS 25.0%
! GAACATTTGAATTGATATGA+AGG - chr2.3:73221638-73221657 None:intergenic 25.0%
! GATTAGATGAAACAACAAAT+TGG - chr2.3:73222608-73222627 None:intergenic 25.0%
! TATCTATATTGTCGATGTAA+AGG + chr2.3:73221414-73221433 MS.gene002258:intron 25.0%
! TATGATGGTACAATTACAAA+AGG + chr2.3:73222135-73222154 MS.gene002258:CDS 25.0%
! TATGTTAAAATTACACACTG+TGG + chr2.3:73221779-73221798 MS.gene002258:CDS 25.0%
! TGAAAGGTAAACTTAATAGA+GGG + chr2.3:73222185-73222204 MS.gene002258:intron 25.0%
! TGAATGAAGGATATTATTTC+AGG - chr2.3:73222980-73222999 None:intergenic 25.0%
! TGAATTTATGTATGACTTTC+TGG + chr2.3:73221673-73221692 MS.gene002258:intron 25.0%
! TTGGAATCAATTCTATATCT+GGG - chr2.3:73223099-73223118 None:intergenic 25.0%
! TTGTTATGCTGATGTAATTA+TGG + chr2.3:73221805-73221824 MS.gene002258:CDS 25.0%
!! CTTCTTTGATTTCATAATGA+TGG + chr2.3:73222282-73222301 MS.gene002258:intron 25.0%
!! GATATAGAATTGATTCCAAT+TGG + chr2.3:73223100-73223119 MS.gene002258:CDS 25.0%
!!! TGTCAGGATTTGTTATTTTT+TGG - chr2.3:73221714-73221733 None:intergenic 25.0%
AGATGAGGGTAAGTATTATA+TGG + chr2.3:73222634-73222653 MS.gene002258:intron 30.0%
ATCACCATTATCATATTGTC+AGG - chr2.3:73221730-73221749 None:intergenic 30.0%
ATCTAATCAAGAAGAGATGA+GGG + chr2.3:73222620-73222639 MS.gene002258:CDS 30.0%
ATTATGGCAAGGAATAAACA+TGG + chr2.3:73221821-73221840 MS.gene002258:CDS 30.0%
ATTCATATTATGTCGCATCA+TGG - chr2.3:73222440-73222459 None:intergenic 30.0%
GTCATATGGCAGTAAAATTT+GGG + chr2.3:73222502-73222521 MS.gene002258:intron 30.0%
TACAAAAGAAATACAGGAGA+TGG + chr2.3:73223045-73223064 MS.gene002258:CDS 30.0%
TTATGGCAAGGAATAAACAT+GGG + chr2.3:73221822-73221841 MS.gene002258:CDS 30.0%
TTCATATTATGTCGCATCAT+GGG - chr2.3:73222439-73222458 None:intergenic 30.0%
! AAAACAGAAGTACATGTCAT+TGG - chr2.3:73222709-73222728 None:intergenic 30.0%
! TAAAAGCTATCCTTTAGCTT+CGG + chr2.3:73222375-73222394 MS.gene002258:CDS 30.0%
! TTGAAGTATAGAAGTTTTGC+TGG + chr2.3:73222924-73222943 MS.gene002258:intron 30.0%
! TTTTATAATTGACACGGCAT+CGG + chr2.3:73222781-73222800 MS.gene002258:CDS 30.0%
!! ATGATAATGGTGATTGCTAA+GGG + chr2.3:73221736-73221755 MS.gene002258:intron 30.0%
!! TATGATAATGGTGATTGCTA+AGG + chr2.3:73221735-73221754 MS.gene002258:intron 30.0%
ACTAGAAATTCATTGTGCCA+AGG + chr2.3:73222083-73222102 MS.gene002258:CDS 35.0%
AGGTGGTACAAAAGAAATAC+AGG + chr2.3:73223039-73223058 MS.gene002258:CDS 35.0%
AGTGACATGTAAGGATCAAA+CGG - chr2.3:73222815-73222834 None:intergenic 35.0%
ATCTTCAGAAGTGACATGTA+AGG - chr2.3:73222824-73222843 None:intergenic 35.0%
ATGCTGATGTAATTATGGCA+AGG + chr2.3:73221810-73221829 MS.gene002258:CDS 35.0%
ATGGTTCGAAGAAAATGCTA+TGG - chr2.3:73222670-73222689 None:intergenic 35.0%
CACTAGTATGTCAAAGAAAG+AGG + chr2.3:73222557-73222576 MS.gene002258:CDS 35.0%
CATCTAATCAAGAAGAGATG+AGG + chr2.3:73222619-73222638 MS.gene002258:CDS 35.0%
CGACATAATATGAATCAACC+TGG + chr2.3:73222445-73222464 MS.gene002258:CDS 35.0%
CTAGAAATTCATTGTGCCAA+GGG + chr2.3:73222084-73222103 MS.gene002258:CDS 35.0%
CTGCAATAACTAGTACCTTA+CGG - chr2.3:73221596-73221615 None:intergenic 35.0%
GATGGTACAATTACAAAAGG+AGG + chr2.3:73222138-73222157 MS.gene002258:CDS 35.0%
GGTCATATGGCAGTAAAATT+TGG + chr2.3:73222501-73222520 MS.gene002258:intron 35.0%
TACCTAAATTAAGGCTTGCA+GGG - chr2.3:73222895-73222914 None:intergenic 35.0%
TAGAAGCGGTTATGATAAAG+CGG - chr2.3:73221467-73221486 None:intergenic 35.0%
TAGTATGTCAAAGAAAGAGG+AGG + chr2.3:73222560-73222579 MS.gene002258:CDS 35.0%
TATGGCAAGGAATAAACATG+GGG + chr2.3:73221823-73221842 MS.gene002258:CDS 35.0%
TATGGCAGTAAAATTTGGGA+AGG + chr2.3:73222506-73222525 MS.gene002258:intron 35.0%
TCAGTAAGGACGTGAAATAT+CGG + chr2.3:73223152-73223171 MS.gene002258:CDS 35.0%
TTACCTAAATTAAGGCTTGC+AGG - chr2.3:73222896-73222915 None:intergenic 35.0%
TTTATAATTGACACGGCATC+GGG + chr2.3:73222782-73222801 MS.gene002258:CDS 35.0%
! ATGTCACTTCTGAAGATATC+TGG + chr2.3:73222827-73222846 MS.gene002258:CDS 35.0%
! CAGAATGATGCAACTCTTTT+AGG + chr2.3:73221383-73221402 MS.gene002258:intron 35.0%
! GAAGCTAAAGGATAGCTTTT+AGG - chr2.3:73222376-73222395 None:intergenic 35.0%
!! ATATTTGGTCTTGCATATGC+AGG + chr2.3:73222335-73222354 MS.gene002258:intron 35.0%
!! GTAAAATTTGGGAAGGCATT+TGG + chr2.3:73222513-73222532 MS.gene002258:intron 35.0%
ACTAGTACCTTACGGTAGTA+AGG - chr2.3:73221588-73221607 None:intergenic 40.0%
AGAGTTGCATCATTCTGCAA+AGG - chr2.3:73221380-73221399 None:intergenic 40.0%
AGTAATGGTGACTTCTATGC+AGG + chr2.3:73222739-73222758 MS.gene002258:intron 40.0%
AGTTGCATCATTCTGCAAAG+GGG - chr2.3:73221378-73221397 None:intergenic 40.0%
CACCTTCGATTGAATCTGTA+AGG - chr2.3:73221287-73221306 None:intergenic 40.0%
GAGTTGCATCATTCTGCAAA+GGG - chr2.3:73221379-73221398 None:intergenic 40.0%
GCAGGCATTAGCTAAAACAT+TGG + chr2.3:73222757-73222776 MS.gene002258:intron 40.0%
GGTAAACTTAATAGAGGGCA+TGG + chr2.3:73222190-73222209 MS.gene002258:intron 40.0%
GTGACATGTAAGGATCAAAC+GGG - chr2.3:73222814-73222833 None:intergenic 40.0%
TCCTGCAAACAGATGAATGA+AGG - chr2.3:73222993-73223012 None:intergenic 40.0%
TCCTTCATTCATCTGTTTGC+AGG + chr2.3:73222989-73223008 MS.gene002258:intron 40.0%
TCTGAAGATATCTGGTGTTC+TGG + chr2.3:73222835-73222854 MS.gene002258:CDS 40.0%
TGGTATCAGTATTCACCTCA+TGG - chr2.3:73222689-73222708 None:intergenic 40.0%
TTATCAGACACGAGATTGCT+GGG + chr2.3:73221953-73221972 MS.gene002258:intron 40.0%
! AAAGGTGTAAACTGATCCCT+TGG - chr2.3:73222103-73222122 None:intergenic 40.0%
! AGCATTTTCTTCGAACCATG+AGG + chr2.3:73222671-73222690 MS.gene002258:intron 40.0%
! AGCTATTCTTGCTGTGTGTA+TGG + chr2.3:73221881-73221900 MS.gene002258:intron 40.0%
! ATTTTACTGCCATATGACCG+AGG - chr2.3:73222500-73222519 None:intergenic 40.0%
! CATGTGTGTGACTTTAGAAG+CGG - chr2.3:73221481-73221500 None:intergenic 40.0%
! GGCTGAATTTGACTTCACTT+GGG - chr2.3:73222874-73222893 None:intergenic 40.0%
! TGAAGGTGTAGCATCAAACT+AGG - chr2.3:73221621-73221640 None:intergenic 40.0%
! TTCAAAGTATCCTGTTGTGC+CGG + chr2.3:73221847-73221866 MS.gene002258:CDS 40.0%
AAGGCAACCTTACTACCGTA+AGG + chr2.3:73221578-73221597 MS.gene002258:intron 45.0%
AATGTCCAGCGTTTCAAGGT+TGG + chr2.3:73221997-73222016 MS.gene002258:CDS 45.0%
ACCTTGAAACGCTGGACATT+AGG - chr2.3:73221997-73222016 None:intergenic 45.0%
ACTCAAACGAAGCTCTTGAG+AGG + chr2.3:73223125-73223144 MS.gene002258:CDS 45.0%
AGCCCTGCAAGCCTTAATTT+AGG + chr2.3:73222890-73222909 MS.gene002258:CDS 45.0%
ATTCTGCAAAGGGGAATGAG+AGG - chr2.3:73221369-73221388 None:intergenic 45.0%
CAACTCGTTCTTTGTACTGC+TGG + chr2.3:73222952-73222971 MS.gene002258:intron 45.0%
CGCCTTACAGATTCAATCGA+AGG + chr2.3:73221282-73221301 MS.gene002258:CDS 45.0%
CTCAAACGAAGCTCTTGAGA+GGG + chr2.3:73223126-73223145 MS.gene002258:CDS 45.0%
CTTATCAGACACGAGATTGC+TGG + chr2.3:73221952-73221971 MS.gene002258:intron 45.0%
GAATAGCTCACAACTTACCC+CGG - chr2.3:73221869-73221888 None:intergenic 45.0%
GAATCAACCTGGTAGTCTCT+TGG + chr2.3:73222456-73222475 MS.gene002258:intron 45.0%
GACTTACATCAACTCGTGCA+GGG + chr2.3:73222038-73222057 MS.gene002258:CDS 45.0%
GCTTCGTTTGAGTACCCAAT+TGG - chr2.3:73223118-73223137 None:intergenic 45.0%
GTGATTCCAGCACAAAGCAA+AGG - chr2.3:73222406-73222425 None:intergenic 45.0%
TATCAGACACGAGATTGCTG+GGG + chr2.3:73221954-73221973 MS.gene002258:intron 45.0%
TCCTAATGTCCAGCGTTTCA+AGG + chr2.3:73221993-73222012 MS.gene002258:CDS 45.0%
TGGTGAAGATTGCCTTGCAT+GGG + chr2.3:73221232-73221251 MS.gene002258:CDS 45.0%
TTCACTTGGGAACCCAACTA+AGG - chr2.3:73222861-73222880 None:intergenic 45.0%
TTGACTTCTGTGCTGCAAAC+GGG + chr2.3:73223068-73223087 MS.gene002258:CDS 45.0%
TTGGTGAAGATTGCCTTGCA+TGG + chr2.3:73221231-73221250 MS.gene002258:CDS 45.0%
! GGGCTGAATTTGACTTCACT+TGG - chr2.3:73222875-73222894 None:intergenic 45.0%
! GTTGACTTCTGTGCTGCAAA+CGG + chr2.3:73223067-73223086 MS.gene002258:CDS 45.0%
! TCAAAGTATCCTGTTGTGCC+GGG + chr2.3:73221848-73221867 MS.gene002258:CDS 45.0%
!! GGCATTTGGTTTGCGTGTAA+CGG + chr2.3:73222527-73222546 MS.gene002258:CDS 45.0%
!! TTCAAGGTTGGTGACCATGT+TGG + chr2.3:73222009-73222028 MS.gene002258:CDS 45.0%
AAAGGACCTGCCGAAGCTAA+AGG - chr2.3:73222388-73222407 None:intergenic 50.0%
AACCACTCCAAGAGACTACC+AGG - chr2.3:73222466-73222485 None:intergenic 50.0%
AACCTGGTAGTCTCTTGGAG+TGG + chr2.3:73222461-73222480 MS.gene002258:intron 50.0%
GCAGGATCAAGAACTGTTGC+CGG + chr2.3:73223007-73223026 MS.gene002258:intron 50.0%
GGACTTACATCAACTCGTGC+AGG + chr2.3:73222037-73222056 MS.gene002258:CDS 50.0%
TCTTGAGAGGGTCGTCAGTA+AGG + chr2.3:73223138-73223157 MS.gene002258:CDS 50.0%
TGGTAGTCTCTTGGAGTGGT+TGG + chr2.3:73222465-73222484 MS.gene002258:intron 50.0%
TGGTGATTGCTAAGGGCTCT+CGG + chr2.3:73221743-73221762 MS.gene002258:intron 50.0%
TGTAAGTCCCCACTCCAACA+TGG - chr2.3:73222026-73222045 None:intergenic 50.0%
TGTACCACCTGCAACACTTC+CGG - chr2.3:73223029-73223048 None:intergenic 50.0%
! AGCTATCCTTTAGCTTCGGC+AGG + chr2.3:73222379-73222398 MS.gene002258:CDS 50.0%
! CAAAGTATCCTGTTGTGCCG+GGG + chr2.3:73221849-73221868 MS.gene002258:CDS 50.0%
! TTGGTGACCATGTTGGAGTG+GGG + chr2.3:73222016-73222035 MS.gene002258:CDS 50.0%
!! CTGGTGTTCTGGCCTTAGTT+GGG + chr2.3:73222846-73222865 MS.gene002258:CDS 50.0%
!! GTTGGTGACCATGTTGGAGT+GGG + chr2.3:73222015-73222034 MS.gene002258:CDS 50.0%
!! TCTCTTGGAGTGGTTGGTCT+TGG + chr2.3:73222471-73222490 MS.gene002258:intron 50.0%
!! TCTGGTGTTCTGGCCTTAGT+TGG + chr2.3:73222845-73222864 MS.gene002258:CDS 50.0%
ACAACTTACCCCGGCACAAC+AGG - chr2.3:73221860-73221879 None:intergenic 55.0%
ACACGAGATTGCTGGGGTTG+TGG + chr2.3:73221960-73221979 MS.gene002258:CDS 55.0%
CATCTCTTGCTGCCCATGCA+AGG - chr2.3:73221247-73221266 None:intergenic 55.0%
GATTGCTGGGGTTGTGGCAA+AGG + chr2.3:73221966-73221985 MS.gene002258:CDS 55.0%
GCAGGTCCTTTGCTTTGTGC+TGG + chr2.3:73222397-73222416 MS.gene002258:CDS 55.0%
GGTCACCAACCTTGAAACGC+TGG - chr2.3:73222005-73222024 None:intergenic 55.0%
GGTGATTGCTAAGGGCTCTC+GGG + chr2.3:73221744-73221763 MS.gene002258:intron 55.0%
TGGGCAGCAAGAGATGCATC+TGG + chr2.3:73221251-73221270 MS.gene002258:CDS 55.0%
! TCTTGGTGGCCTCGGTCATA+TGG + chr2.3:73222488-73222507 MS.gene002258:intron 55.0%
!! ACTGTTGCCGGAAGTGTTGC+AGG + chr2.3:73223019-73223038 MS.gene002258:CDS 55.0%
!! CTTGGAGTGGTTGGTCTTGG+TGG + chr2.3:73222474-73222493 MS.gene002258:intron 55.0%
!! GGTTGGTGACCATGTTGGAG+TGG + chr2.3:73222014-73222033 MS.gene002258:CDS 55.0%
GCTGGGGTTGTGGCAAAGGT+TGG + chr2.3:73221970-73221989 MS.gene002258:CDS 60.0%
!! GAGGAGGCGCTGAGCTTTCT+TGG + chr2.3:73222576-73222595 MS.gene002258:CDS 60.0%
!! GTGGTTGGTCTTGGTGGCCT+CGG + chr2.3:73222480-73222499 MS.gene002258:intron 60.0%
!! GTTGCCGGAAGTGTTGCAGG+TGG + chr2.3:73223022-73223041 MS.gene002258:CDS 60.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 73221215 73223207 73221215 ID=MS.gene002258
chr2.3 mRNA 73221215 73223207 73221215 ID=MS.gene002258.t1;Parent=MS.gene002258
chr2.3 exon 73221215 73221303 73221215 ID=MS.gene002258.t1.exon1;Parent=MS.gene002258.t1
chr2.3 CDS 73221215 73221303 73221215 ID=cds.MS.gene002258.t1;Parent=MS.gene002258.t1
chr2.3 exon 73221757 73221870 73221757 ID=MS.gene002258.t1.exon2;Parent=MS.gene002258.t1
chr2.3 CDS 73221757 73221870 73221757 ID=cds.MS.gene002258.t1;Parent=MS.gene002258.t1
chr2.3 exon 73221960 73222190 73221960 ID=MS.gene002258.t1.exon3;Parent=MS.gene002258.t1
chr2.3 CDS 73221960 73222190 73221960 ID=cds.MS.gene002258.t1;Parent=MS.gene002258.t1
chr2.3 exon 73222357 73222469 73222357 ID=MS.gene002258.t1.exon4;Parent=MS.gene002258.t1
chr2.3 CDS 73222357 73222469 73222357 ID=cds.MS.gene002258.t1;Parent=MS.gene002258.t1
chr2.3 exon 73222514 73222641 73222514 ID=MS.gene002258.t1.exon5;Parent=MS.gene002258.t1
chr2.3 CDS 73222514 73222641 73222514 ID=cds.MS.gene002258.t1;Parent=MS.gene002258.t1
chr2.3 exon 73222761 73222911 73222761 ID=MS.gene002258.t1.exon6;Parent=MS.gene002258.t1
chr2.3 CDS 73222761 73222911 73222761 ID=cds.MS.gene002258.t1;Parent=MS.gene002258.t1
chr2.3 exon 73223011 73223207 73223011 ID=MS.gene002258.t1.exon7;Parent=MS.gene002258.t1
chr2.3 CDS 73223011 73223207 73223011 ID=cds.MS.gene002258.t1;Parent=MS.gene002258.t1
Gene Sequence

>MS.gene002258

ATGAGTTCTGAAGGTGTTGGTGAAGATTGCCTTGCATGGGCAGCAAGAGATGCATCTGGTGTTCTGTCGCCTTACAGATTCAATCGAAGGTGTGTGTGTATATATATATATATATATATATATATATATATATATATATATGTTACATTTACCTCTCATTCCCCTTTGCAGAATGATGCAACTCTTTTAGGATTTAATCTATCTATATTGTCGATGTAAAGGGTTTTTAGACTTGTCACTCAATCATAACCGCTTTATCATAACCGCTTCTAAAGTCACACACATGATTGCTTGTGATGTGTTGATAGTATAAAACTTTTTATTTACACTGACAGTGTATGAAAATTAAACTCATTTTATTTCAAGGCAACCTTACTACCGTAAGGTACTAGTTATTGCAGTTCCTAGTTTGATGCTACACCTTCATATCAATTCAAATGTTCACGTATAAGAATGTATGAATTTATGTATGACTTTCTGGCCATGTTAAATTTTTCCAAAAAATAACAAATCCTGACAATATGATAATGGTGATTGCTAAGGGCTCTCGGGAGTGAAGATGTTTATGTTAAAATTACACACTGTGGCGTTTGTTATGCTGATGTAATTATGGCAAGGAATAAACATGGGGATTCAAAGTATCCTGTTGTGCCGGGGTAAGTTGTGAGCTATTCTTGCTGTGTGTATGGTTGAGAATGTTATATACATAAGCCTACTTATCTGTGTTTTTCTTTTTTCTTATCAGACACGAGATTGCTGGGGTTGTGGCAAAGGTTGGTCCTAATGTCCAGCGTTTCAAGGTTGGTGACCATGTTGGAGTGGGGACTTACATCAACTCGTGCAGGGAATGTGAGTATTGTAATGATAGACTAGAAATTCATTGTGCCAAGGGATCAGTTTACACCTTTAATTGTGTTGATTATGATGGTACAATTACAAAAGGAGGATACTCGACTTCAATTGTAGTAAATGAAAGGTAAACTTAATAGAGGGCATGGTTCTGATTATGTTTTATGAGTTTTTATGAGACCTTATCTTGCTGAAATTTATTATGAGCACTAAAAAAACTTCTTTGATTTCATAATGATGGAAGTTGTAATTTCAGTTCATAACTTCTTTTATATTTGGTCTTGCATATGCAGGTATTGCTTCTTGATACCTAAAAGCTATCCTTTAGCTTCGGCAGGTCCTTTGCTTTGTGCTGGAATCACTGTTTATTCTCCCATGATGCGACATAATATGAATCAACCTGGTAGTCTCTTGGAGTGGTTGGTCTTGGTGGCCTCGGTCATATGGCAGTAAAATTTGGGAAGGCATTTGGTTTGCGTGTAACGGTTTTCAGCACTAGTATGTCAAAGAAAGAGGAGGCGCTGAGCTTTCTTGGTGCAGACCAATTTGTTGTTTCATCTAATCAAGAAGAGATGAGGGTAAGTATTATATGGACAATCTATACCATAGCATTTTCTTCGAACCATGAGGTGAATACTGATACCAATGACATGTACTTCTGTTTTTTTTATCTAAAGTAATGGTGACTTCTATGCAGGCATTAGCTAAAACATTGGATTTTATAATTGACACGGCATCGGGTGATCACCCGTTTGATCCTTACATGTCACTTCTGAAGATATCTGGTGTTCTGGCCTTAGTTGGGTTCCCAAGTGAAGTCAAATTCAGCCCTGCAAGCCTTAATTTAGGTAATGTTGCATTTGAAGTATAGAAGTTTTGCTGGAATAACAACTCGTTCTTTGTACTGCTGGAACCTGAAATAATATCCTTCATTCATCTGTTTGCAGGATCAAGAACTGTTGCCGGAAGTGTTGCAGGTGGTACAAAAGAAATACAGGAGATGGTTGACTTCTGTGCTGCAAACGGGATTCACCCAGATATAGAATTGATTCCAATTGGGTACTCAAACGAAGCTCTTGAGAGGGTCGTCAGTAAGGACGTGAAATATCGGTTTGTAATAGACATTGAAAACTCCCTCAAGTAG
Protein sequence

>MS.gene002258.t1

MSSEGVGEDCLAWAARDASGVLSPYRFNRRALGSEDVYVKITHCGVCYADVIMARNKHGDSKYPVVPGHEIAGVVAKVGPNVQRFKVGDHVGVGTYINSCRECEYCNDRLEIHCAKGSVYTFNCVDYDGTITKGGYSTSIVVNERYCFLIPKSYPLASAGPLLCAGITVYSPMMRHNMNQPGIKFGKAFGLRVTVFSTSMSKKEEALSFLGADQFVVSSNQEEMRALAKTLDFIIDTASGDHPFDPYMSLLKISGVLALVGFPSEVKFSPASLNLGSRTVAGSVAGGTKEIQEMVDFCAANGIHPDIELIPIGYSNEALERVVSKDVKYRFVIDIENSLK