AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene029589

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene029589.t1 MTR_1g107425 98.883 358 4 0 1 358 1 358 0.0 724
MS.gene029589.t1 MTR_1g107425 97.973 296 6 0 1 296 1 296 0.0 593
MS.gene029589.t1 MTR_5g031360 51.862 349 168 0 6 354 10 358 3.55e-124 362
MS.gene029589.t1 MTR_5g031190 51.312 343 167 0 9 351 11 353 6.30e-123 358
MS.gene029589.t1 MTR_5g031300 52.770 343 162 0 9 351 12 354 6.64e-122 356
MS.gene029589.t1 MTR_5g031250 52.507 339 161 0 13 351 15 353 1.57e-121 355
MS.gene029589.t1 MTR_5g031310 50.729 343 169 0 9 351 12 354 2.53e-120 352
MS.gene029589.t1 MTR_4g115300 51.622 339 164 0 13 351 15 353 2.58e-120 352
MS.gene029589.t1 MTR_5g031305 50.146 343 171 0 9 351 12 354 6.89e-120 351
MS.gene029589.t1 MTR_5g031230 52.507 339 161 0 13 351 15 353 1.80e-119 350
MS.gene029589.t1 MTR_5g031390 50.729 343 169 0 9 351 11 353 7.16e-119 348
MS.gene029589.t1 MTR_8g068190 52.478 343 163 0 9 351 11 353 1.21e-118 347
MS.gene029589.t1 MTR_5g031210 53.097 339 159 0 13 351 15 353 2.09e-116 342
MS.gene029589.t1 MTR_5g031430 51.297 347 169 0 8 354 10 356 9.38e-114 335
MS.gene029589.t1 MTR_5g031180 51.020 343 168 0 9 351 11 353 1.63e-112 332
MS.gene029589.t1 MTR_1g025950 49.280 347 175 1 9 354 10 356 6.14e-109 323
MS.gene029589.t1 MTR_8g092630 50.294 340 168 1 15 354 74 412 4.82e-107 320
MS.gene029589.t1 MTR_2g009810 45.349 344 186 2 12 354 62 404 2.93e-99 300
MS.gene029589.t1 MTR_5g031250 55.895 229 101 0 11 239 13 241 1.39e-83 254
MS.gene029589.t1 MTR_2g009820 41.463 246 138 4 114 354 8 252 2.14e-51 172
MS.gene029589.t1 MTR_5g031290 43.636 110 62 0 245 354 80 189 2.01e-26 104
MS.gene029589.t1 MTR_5g031290 52.174 69 32 1 9 76 11 79 1.21e-18 83.2
MS.gene029589.t1 MTR_8g095220 25.269 372 242 10 13 351 56 424 5.67e-24 102
MS.gene029589.t1 MTR_8g095220 28.689 244 149 6 13 234 56 296 5.97e-21 92.4
MS.gene029589.t1 MTR_5g087710 25.000 340 221 9 35 342 44 381 6.56e-13 69.7
MS.gene029589.t1 MTR_3g089977 23.582 335 226 8 37 342 37 370 4.27e-11 63.9
MS.gene029589.t1 MTR_3g089940 23.881 335 225 8 37 342 37 370 4.34e-11 63.9
MS.gene029589.t1 MTR_3g089940 23.881 335 225 8 37 342 37 370 4.34e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene029589.t1 AT3G19450 76.257 358 85 0 1 358 1 358 0.0 523
MS.gene029589.t1 AT4G34230 77.311 357 80 1 1 357 1 356 4.36e-178 498
MS.gene029589.t1 AT4G34230 77.031 357 81 1 1 357 1 356 4.53e-177 496
MS.gene029589.t1 AT2G21890 49.435 354 178 1 6 358 2 355 1.18e-121 356
MS.gene029589.t1 AT2G21730 49.296 355 178 2 6 358 2 356 2.94e-120 352
MS.gene029589.t1 AT4G39330 50.877 342 168 0 13 354 15 356 3.29e-120 352
MS.gene029589.t1 AT4G37970 48.830 342 175 0 13 354 16 357 2.16e-118 347
MS.gene029589.t1 AT4G37990 50.857 350 172 0 5 354 3 352 5.46e-114 336
MS.gene029589.t1 AT4G37980 47.714 350 183 0 5 354 3 352 3.44e-108 321
MS.gene029589.t1 AT1G72680 43.503 354 199 1 1 354 1 353 4.02e-97 293
MS.gene029589.t1 AT4G39330 49.481 289 146 0 13 301 15 303 1.61e-96 289
MS.gene029589.t1 AT4G37970 47.857 280 146 0 13 292 16 295 2.08e-89 271
MS.gene029589.t1 AT4G37980 48.084 287 148 1 5 290 3 289 4.14e-83 254
MS.gene029589.t1 AT4G37970 50.000 228 114 0 13 240 16 243 7.09e-75 232
MS.gene029589.t1 AT4G37970 50.000 228 114 0 13 240 16 243 1.12e-74 232
MS.gene029589.t1 AT5G63620 26.005 373 238 12 13 351 58 426 4.93e-24 102
MS.gene029589.t1 AT5G63620 25.737 373 239 12 13 351 58 426 9.44e-24 102
MS.gene029589.t1 AT5G63620 28.870 239 145 6 13 229 58 293 1.71e-21 94.0
MS.gene029589.t1 AT1G32780 25.439 342 215 10 37 339 37 377 4.16e-14 73.2
MS.gene029589.t1 AT1G22430 26.254 339 211 13 37 340 42 376 1.75e-13 71.2
MS.gene029589.t1 AT1G22430 26.254 339 211 13 37 340 42 376 1.75e-13 71.2
MS.gene029589.t1 AT1G64710 23.512 336 224 10 37 340 13 347 1.33e-11 65.5
MS.gene029589.t1 AT1G64710 23.512 336 224 10 37 340 36 370 1.50e-11 65.5
MS.gene029589.t1 AT4G22110 24.478 335 218 11 37 338 43 375 1.93e-11 65.1
MS.gene029589.t1 AT4G22110 24.478 335 218 11 37 338 43 375 1.93e-11 65.1

Find 89 sgRNAs with CRISPR-Local

Find 145 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACAGTCCACTTTCACATTT+TGG 0.140332 1.3:+73519177 MS.gene029589:CDS
CAGAGGAGATGTTGGAGTTT+TGG 0.195897 1.3:+73519808 MS.gene029589:CDS
CCCAGGAACCATAGGATAAT+TGG 0.245188 1.3:-73518162 None:intergenic
TCCAATTATCCTATGGTTCC+TGG 0.314697 1.3:+73518161 MS.gene029589:CDS
CTTTCATTGCTCAAAATTGA+TGG 0.339894 1.3:+73519456 MS.gene029589:CDS
TGGGCTAAGAGGTGGAATAT+TGG 0.354895 1.3:+73519212 MS.gene029589:CDS
TCAATTACTGGAAGCTTTGT+TGG 0.375046 1.3:+73519771 MS.gene029589:CDS
GGGCTAAGAGGTGGAATATT+GGG 0.377765 1.3:+73519213 MS.gene029589:CDS
GGCTCAAGAGGGTGACCAAC+AGG 0.414159 1.3:-73519429 None:intergenic
TCTTCAATTTGTTACACCTA+TGG 0.415794 1.3:+73519512 MS.gene029589:CDS
AAAGAGGCACTTGAGGATCT+TGG 0.422297 1.3:+73519324 MS.gene029589:CDS
TGATGGGAAATTGATCTTGA+TGG 0.430428 1.3:+73519473 MS.gene029589:CDS
AACAATGGTGCAACTTGCTC+TGG 0.430947 1.3:-73519135 None:intergenic
TGCTCTGGTGCCAATCCCTC+TGG 0.434175 1.3:-73519120 None:intergenic
CAATTACTGGAAGCTTTGTT+GGG 0.441579 1.3:+73519772 MS.gene029589:CDS
GTGAAAGTAGCAAAGGCATT+AGG 0.442216 1.3:+73519261 MS.gene029589:CDS
CAATTTCAATCATGGAGGTT+AGG 0.447585 1.3:-73519842 None:intergenic
CATGGTCACAATTTCAATCA+TGG 0.449540 1.3:-73519850 None:intergenic
CTTGTTAGCTCAGATACTGT+TGG 0.452341 1.3:+73519360 MS.gene029589:CDS
AGAAGAATGATGTGAGGTAT+AGG 0.457166 1.3:+73519904 MS.gene029589:CDS
CACCTGAGAGTGTAGGTGTA+TGG 0.459569 1.3:-73517951 None:intergenic
GTAGGGAGGAAGTCAATTAC+TGG 0.465862 1.3:+73519759 MS.gene029589:intron
AATACTGTAACAAGAAGATC+TGG 0.467552 1.3:+73518449 MS.gene029589:CDS
GGTGTATGGAGTGAGAATTC+CGG 0.472955 1.3:-73517937 None:intergenic
TGGCATGTCCAATTATCCTA+TGG 0.476856 1.3:+73518154 MS.gene029589:CDS
GAAGGAGACAGAGGAGATGT+TGG 0.486422 1.3:+73519800 MS.gene029589:CDS
TACAATGATGTTTACACTGA+CGG 0.486763 1.3:+73518475 MS.gene029589:CDS
TTTCATTGCTCAAAATTGAT+GGG 0.487627 1.3:+73519457 MS.gene029589:CDS
CTCCATACACCTACACTCTC+AGG 0.489319 1.3:+73517949 MS.gene029589:CDS
TGTGAAAATACCAGAGGGAT+TGG 0.495073 1.3:+73519110 MS.gene029589:CDS
TTAGCTGCAAAAGACCCTTC+CGG 0.497005 1.3:+73517918 MS.gene029589:CDS
ATCATTGATACTGTTCCTGT+TGG 0.502498 1.3:+73519414 MS.gene029589:CDS
TTCAGCCCAAAATGTGAAAG+TGG 0.506368 1.3:-73519183 None:intergenic
AGAGGTGGAATATTGGGTCT+TGG 0.506833 1.3:+73519219 MS.gene029589:CDS
GTTGCACCATTGTTGTGTGC+AGG 0.511420 1.3:+73519144 MS.gene029589:CDS
CTTGGTGGAGTAGGACACAT+GGG 0.512497 1.3:+73519237 MS.gene029589:CDS
GGTGGAATATTGGGTCTTGG+TGG 0.517471 1.3:+73519222 MS.gene029589:CDS
CTGAAAACACCTGGGCTAAG+AGG 0.518039 1.3:+73519201 MS.gene029589:CDS
CCAATTATCCTATGGTTCCT+GGG 0.521261 1.3:+73518162 MS.gene029589:CDS
GTGGGAGTTGGTCTTCTCGT+TGG 0.525528 1.3:+73518385 MS.gene029589:CDS
GTTCAAAGTGGGAGAAATTG+TGG 0.526442 1.3:+73518366 MS.gene029589:CDS
GTGGGAGAAATTGTGGGAGT+TGG 0.528018 1.3:+73518373 MS.gene029589:CDS
AGCTTTGTTAATGTAATCCA+TGG 0.528656 1.3:-73519868 None:intergenic
GAAGAAGAAAGAGGCACTTG+AGG 0.529985 1.3:+73519317 MS.gene029589:CDS
TGTCAAAGGAAGTAAATTTG+AGG 0.531733 1.3:+73519938 MS.gene029589:CDS
GGTTGGTGAGGTACTAGAGG+TGG 0.538320 1.3:+73518327 MS.gene029589:CDS
CATACATACCCAGGAACCAT+AGG 0.538858 1.3:-73518170 None:intergenic
GATGGGAAATTGATCTTGAT+GGG 0.539815 1.3:+73519474 MS.gene029589:CDS
GTTACACCTATGGTCATGCT+AGG 0.542756 1.3:+73519522 MS.gene029589:CDS
TTCAAAGTGGGAGAAATTGT+GGG 0.545521 1.3:+73518367 MS.gene029589:CDS
ATATTGGGTCTTGGTGGAGT+AGG 0.559461 1.3:+73519228 MS.gene029589:CDS
TTCTGATAAGAAGAAGAAAG+AGG 0.560483 1.3:+73519308 MS.gene029589:CDS
AGGTGGGTTCAAATGTTACA+AGG 0.565769 1.3:+73518344 MS.gene029589:CDS
GTTGGTGAGGTACTAGAGGT+GGG 0.567462 1.3:+73518328 MS.gene029589:CDS
AGGTTCGTTGTGGATGTCAA+AGG 0.573106 1.3:+73519924 MS.gene029589:CDS
CATGATTGAAATTGTGACCA+TGG 0.581593 1.3:+73519851 MS.gene029589:CDS
TACATCAAAATTCATTACTG+TGG 0.582501 1.3:+73518092 MS.gene029589:CDS
TTGGTGGAGTAGGACACATG+GGG 0.596788 1.3:+73519238 MS.gene029589:CDS
AAATGTTACAAGGTTCAAAG+TGG 0.597798 1.3:+73518354 MS.gene029589:CDS
AATGTTACAAGGTTCAAAGT+GGG 0.599126 1.3:+73518355 MS.gene029589:CDS
TAGGTGTAACAAATTGAAGA+GGG 0.600517 1.3:-73519509 None:intergenic
ATAGGTGTAACAAATTGAAG+AGG 0.601584 1.3:-73519510 None:intergenic
AATATTCCACCTCTTAGCCC+AGG 0.603820 1.3:-73519210 None:intergenic
AAAACACCTGGGCTAAGAGG+TGG 0.604672 1.3:+73519204 MS.gene029589:CDS
AATGAAAGATAAGGCTCAAG+AGG 0.608696 1.3:-73519441 None:intergenic
ACCATGCAGAAACACAGGAC+CGG 0.608947 1.3:+73518061 MS.gene029589:intron
TCTTGGTGGAGTAGGACACA+TGG 0.610428 1.3:+73519236 MS.gene029589:CDS
TGTGAGGTATAGGTTCGTTG+TGG 0.619087 1.3:+73519914 MS.gene029589:CDS
GTTGCAGAAAGAACAACAGT+AGG 0.620661 1.3:+73517894 MS.gene029589:CDS
AAGCTTTGTTGGGAGCGTGA+AGG 0.622128 1.3:+73519782 MS.gene029589:CDS
TTTGTTGTGAAAATACCAGA+GGG 0.624457 1.3:+73519105 MS.gene029589:CDS
AGATAATCACCTGAGAGTGT+AGG 0.625972 1.3:-73517958 None:intergenic
CAGGCATGAAGTGGTTGGTG+AGG 0.629500 1.3:+73518315 MS.gene029589:intron
CACTGACGGAAAGATCACTC+AGG 0.632595 1.3:+73518489 MS.gene029589:CDS
GTCACACCTGCACACAACAA+TGG 0.650120 1.3:-73519150 None:intergenic
TGGGAGCGTGAAGGAGACAG+AGG 0.652158 1.3:+73519791 MS.gene029589:CDS
ATGAAAGATAAGGCTCAAGA+GGG 0.658619 1.3:-73519440 None:intergenic
GATTGGAGAAGAATGATGTG+AGG 0.663743 1.3:+73519898 MS.gene029589:CDS
GTTTGTTGTGAAAATACCAG+AGG 0.664399 1.3:+73519104 MS.gene029589:CDS
TTAAAACCATGCAGAAACAC+AGG 0.668324 1.3:+73518056 MS.gene029589:intron
AGTGGTTGGTGAGGTACTAG+AGG 0.677629 1.3:+73518324 MS.gene029589:CDS
ACTGACGGAAAGATCACTCA+GGG 0.682017 1.3:+73518490 MS.gene029589:CDS
GGTCACAATTTCAATCATGG+AGG 0.697784 1.3:-73519847 None:intergenic
TATGGAGTGAGAATTCCGGA+AGG 0.698628 1.3:-73517933 None:intergenic
ATGGAGTGAGAATTCCGGAA+GGG 0.705897 1.3:-73517932 None:intergenic
AAGAGCTTATCACAGTGACA+TGG 0.707377 1.3:-73519287 None:intergenic
AGGTGTAACAAATTGAAGAG+GGG 0.708980 1.3:-73519508 None:intergenic
GACGGAAAGATCACTCAGGG+TGG 0.713421 1.3:+73518493 MS.gene029589:CDS
TGGTGGAGTAGGACACATGG+GGG 0.751756 1.3:+73519239 MS.gene029589:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAATTTAATTTAATTTTA+TGG - chr1.3:73518556-73518575 None:intergenic 0.0%
!! ATAAAAGTAATTAATTTAGT+TGG - chr1.3:73518988-73519007 None:intergenic 10.0%
!! TAAAAGTAATTAATTTAGTT+GGG - chr1.3:73518987-73519006 None:intergenic 10.0%
!! TTAGAAGATATCATTAAAAT+TGG - chr1.3:73519720-73519739 None:intergenic 15.0%
!!! AATCATCAATGTTTTTTAAA+TGG - chr1.3:73518653-73518672 None:intergenic 15.0%
!!! ATCATCAATGTTTTTTAAAT+GGG - chr1.3:73518652-73518671 None:intergenic 15.0%
!!! ATGTTATGAAAAATGTTTTA+TGG + chr1.3:73518807-73518826 MS.gene029589:intron 15.0%
!!! TTATTTAAAAATTTAGCTCA+AGG + chr1.3:73519622-73519641 MS.gene029589:intron 15.0%
!!! TTTTGACTTAATTATTGAAT+AGG + chr1.3:73519574-73519593 MS.gene029589:intron 15.0%
!! AATTTAGATATGTTCAATTG+TGG + chr1.3:73518903-73518922 MS.gene029589:intron 20.0%
!! AGTTCACAGTAAAAAAAATA+TGG - chr1.3:73518950-73518969 None:intergenic 20.0%
!! TTTAAACTGATTATGTGTTT+GGG + chr1.3:73519067-73519086 MS.gene029589:intron 20.0%
!!! ATTAATTACTTTTATGAACC+TGG + chr1.3:73518993-73519012 MS.gene029589:intron 20.0%
!!! CTTTAAGTTATTGAACTATT+TGG - chr1.3:73519664-73519683 None:intergenic 20.0%
!!! TATGATTGTTTTGAAAAAAC+AGG + chr1.3:73518296-73518315 MS.gene029589:intron 20.0%
!!! TTTTAAACTGATTATGTGTT+TGG + chr1.3:73519066-73519085 MS.gene029589:intron 20.0%
! AAAACGTGTGGAATTTAAAT+TGG - chr1.3:73518613-73518632 None:intergenic 25.0%
! TAACAGGTGTGAAAAAAATT+GGG - chr1.3:73518836-73518855 None:intergenic 25.0%
! TAAGTCAAAAATCATTGATG+AGG - chr1.3:73519564-73519583 None:intergenic 25.0%
! TACATCAAAATTCATTACTG+TGG + chr1.3:73518092-73518111 MS.gene029589:CDS 25.0%
! TCTATCAAATTATTATGTCC+AGG + chr1.3:73518211-73518230 MS.gene029589:intron 25.0%
! TTAAACTGATTATGTGTTTG+GGG + chr1.3:73519068-73519087 MS.gene029589:intron 25.0%
! TTAACAGGTGTGAAAAAAAT+TGG - chr1.3:73518837-73518856 None:intergenic 25.0%
! TTTCATTGCTCAAAATTGAT+GGG + chr1.3:73519457-73519476 MS.gene029589:CDS 25.0%
!! ATTTTGAGCAATGAAAGATA+AGG - chr1.3:73519453-73519472 None:intergenic 25.0%
!! TTTTTCATAACATAAGCGTT+TGG - chr1.3:73518800-73518819 None:intergenic 25.0%
!!! ATTTTGATGTAAACATCATC+CGG - chr1.3:73518083-73518102 None:intergenic 25.0%
!!! TAACAAAGCTTTTGAAAGAT+TGG + chr1.3:73519881-73519900 MS.gene029589:CDS 25.0%
AAAATCATTGATGAGGAAGA+AGG - chr1.3:73519557-73519576 None:intergenic 30.0%
AAATGTTACAAGGTTCAAAG+TGG + chr1.3:73518354-73518373 MS.gene029589:CDS 30.0%
AATACTGTAACAAGAAGATC+TGG + chr1.3:73518449-73518468 MS.gene029589:CDS 30.0%
AATGTTACAAGGTTCAAAGT+GGG + chr1.3:73518355-73518374 MS.gene029589:CDS 30.0%
ATAGGTGTAACAAATTGAAG+AGG - chr1.3:73519513-73519532 None:intergenic 30.0%
CACCAAATCAAAAATGATCT+TGG + chr1.3:73518134-73518153 MS.gene029589:CDS 30.0%
CCTTAAAATTAATCGAAACC+TGG - chr1.3:73518232-73518251 None:intergenic 30.0%
CTTTCATTGCTCAAAATTGA+TGG + chr1.3:73519456-73519475 MS.gene029589:CDS 30.0%
TACAATGATGTTTACACTGA+CGG + chr1.3:73518475-73518494 MS.gene029589:CDS 30.0%
TAGGTGTAACAAATTGAAGA+GGG - chr1.3:73519512-73519531 None:intergenic 30.0%
TATTAATGTTGTGTTGCGTA+GGG + chr1.3:73519742-73519761 MS.gene029589:intron 30.0%
TGTCAAAGGAAGTAAATTTG+AGG + chr1.3:73519938-73519957 MS.gene029589:CDS 30.0%
TTAAAAATCCTCAACAGTCA+AGG - chr1.3:73519601-73519620 None:intergenic 30.0%
TTCTGATAAGAAGAAGAAAG+AGG + chr1.3:73519308-73519327 MS.gene029589:CDS 30.0%
! CCAGGTTTCGATTAATTTTA+AGG + chr1.3:73518229-73518248 MS.gene029589:intron 30.0%
! TTTGTTGTGAAAATACCAGA+GGG + chr1.3:73519105-73519124 MS.gene029589:CDS 30.0%
! TTTTATGAACCTGGTGTAAA+AGG + chr1.3:73519002-73519021 MS.gene029589:intron 30.0%
!! AGCTTTGTTAATGTAATCCA+TGG - chr1.3:73519871-73519890 None:intergenic 30.0%
!! CTATTACTTTTGTTCAACGA+CGG - chr1.3:73518533-73518552 None:intergenic 30.0%
!! TCTTCAATTTGTTACACCTA+TGG + chr1.3:73519512-73519531 MS.gene029589:CDS 30.0%
!! TGCCAAGATCATTTTTGATT+TGG - chr1.3:73518139-73518158 None:intergenic 30.0%
AATGAAAGATAAGGCTCAAG+AGG - chr1.3:73519444-73519463 None:intergenic 35.0%
AGAAGAATGATGTGAGGTAT+AGG + chr1.3:73519904-73519923 MS.gene029589:CDS 35.0%
AGAAGTTAACATACATACCC+AGG - chr1.3:73518182-73518201 None:intergenic 35.0%
AGGTGTAACAAATTGAAGAG+GGG - chr1.3:73519511-73519530 None:intergenic 35.0%
ATCATTGATACTGTTCCTGT+TGG + chr1.3:73519414-73519433 MS.gene029589:CDS 35.0%
ATGAAAGATAAGGCTCAAGA+GGG - chr1.3:73519443-73519462 None:intergenic 35.0%
CAAGTTTGTATGTGCTTAAC+AGG - chr1.3:73518852-73518871 None:intergenic 35.0%
CAATTTCAATCATGGAGGTT+AGG - chr1.3:73519845-73519864 None:intergenic 35.0%
CATGATTGAAATTGTGACCA+TGG + chr1.3:73519851-73519870 MS.gene029589:CDS 35.0%
CATGGTCACAATTTCAATCA+TGG - chr1.3:73519853-73519872 None:intergenic 35.0%
CTATTAATGTTGTGTTGCGT+AGG + chr1.3:73519741-73519760 MS.gene029589:intron 35.0%
GATGGGAAATTGATCTTGAT+GGG + chr1.3:73519474-73519493 MS.gene029589:CDS 35.0%
GTGTGGAATTTAAATTGGCA+CGG - chr1.3:73518608-73518627 None:intergenic 35.0%
TCAGAAATGCATAAAACGTG+TGG - chr1.3:73518625-73518644 None:intergenic 35.0%
TGATGGGAAATTGATCTTGA+TGG + chr1.3:73519473-73519492 MS.gene029589:CDS 35.0%
TTAAAACCATGCAGAAACAC+AGG + chr1.3:73518056-73518075 MS.gene029589:intron 35.0%
TTCAAAGTGGGAGAAATTGT+GGG + chr1.3:73518367-73518386 MS.gene029589:CDS 35.0%
TTGAAAAAACAGGCATGAAG+TGG + chr1.3:73518306-73518325 MS.gene029589:intron 35.0%
! ACAGTCCACTTTCACATTTT+GGG + chr1.3:73519178-73519197 MS.gene029589:CDS 35.0%
! TACAGTCCACTTTCACATTT+TGG + chr1.3:73519177-73519196 MS.gene029589:CDS 35.0%
! TCAATTACTGGAAGCTTTGT+TGG + chr1.3:73519771-73519790 MS.gene029589:CDS 35.0%
! TTTCTAACACCTTTTACACC+AGG - chr1.3:73519014-73519033 None:intergenic 35.0%
!! CAATTACTGGAAGCTTTGTT+GGG + chr1.3:73519772-73519791 MS.gene029589:CDS 35.0%
!! GTTTGTTGTGAAAATACCAG+AGG + chr1.3:73519104-73519123 MS.gene029589:CDS 35.0%
!!! TTGGAGTTTTGGAAAGAGAA+GGG + chr1.3:73519819-73519838 MS.gene029589:CDS 35.0%
AAAAACAGGCATGAAGTGGT+TGG + chr1.3:73518310-73518329 MS.gene029589:intron 40.0%
AAGAGCTTATCACAGTGACA+TGG - chr1.3:73519290-73519309 None:intergenic 40.0%
ATCATTGATGAGGAAGAAGG+TGG - chr1.3:73519554-73519573 None:intergenic 40.0%
CCAATTATCCTATGGTTCCT+GGG + chr1.3:73518162-73518181 MS.gene029589:CDS 40.0%
CTTGTTAGCTCAGATACTGT+TGG + chr1.3:73519360-73519379 MS.gene029589:CDS 40.0%
GATTGGAGAAGAATGATGTG+AGG + chr1.3:73519898-73519917 MS.gene029589:CDS 40.0%
GGTCACAATTTCAATCATGG+AGG - chr1.3:73519850-73519869 None:intergenic 40.0%
GTTCAAAGTGGGAGAAATTG+TGG + chr1.3:73518366-73518385 MS.gene029589:CDS 40.0%
GTTGCAGAAAGAACAACAGT+AGG + chr1.3:73517894-73517913 MS.gene029589:CDS 40.0%
TCCAATTATCCTATGGTTCC+TGG + chr1.3:73518161-73518180 MS.gene029589:CDS 40.0%
TGGCATGTCCAATTATCCTA+TGG + chr1.3:73518154-73518173 MS.gene029589:CDS 40.0%
TGTGAAAATACCAGAGGGAT+TGG + chr1.3:73519110-73519129 MS.gene029589:CDS 40.0%
TGTTTGGGGATATTACTGTC+AGG + chr1.3:73519082-73519101 MS.gene029589:intron 40.0%
TTCAGCCCAAAATGTGAAAG+TGG - chr1.3:73519186-73519205 None:intergenic 40.0%
! AGATAATCACCTGAGAGTGT+AGG - chr1.3:73517961-73517980 None:intergenic 40.0%
! AGGTGGGTTCAAATGTTACA+AGG + chr1.3:73518344-73518363 MS.gene029589:CDS 40.0%
! ATTTTGGGCTGAAAACACCT+GGG + chr1.3:73519193-73519212 MS.gene029589:CDS 40.0%
! CTTTTACCTAGCATGACCAT+AGG - chr1.3:73519531-73519550 None:intergenic 40.0%
!! GTGAAAGTAGCAAAGGCATT+AGG + chr1.3:73519261-73519280 MS.gene029589:CDS 40.0%
!! TTACTTTTGTTCAACGACGG+TGG - chr1.3:73518530-73518549 None:intergenic 40.0%
!!! GTTGGAGTTTTGGAAAGAGA+AGG + chr1.3:73519818-73519837 MS.gene029589:CDS 40.0%
AATATTCCACCTCTTAGCCC+AGG - chr1.3:73519213-73519232 None:intergenic 45.0%
ACTGACGGAAAGATCACTCA+GGG + chr1.3:73518490-73518509 MS.gene029589:CDS 45.0%
AGAGGTGGAATATTGGGTCT+TGG + chr1.3:73519219-73519238 MS.gene029589:CDS 45.0%
AGGTTCGTTGTGGATGTCAA+AGG + chr1.3:73519924-73519943 MS.gene029589:CDS 45.0%
ATATTGGGTCTTGGTGGAGT+AGG + chr1.3:73519228-73519247 MS.gene029589:CDS 45.0%
ATGGAGTGAGAATTCCGGAA+GGG - chr1.3:73517935-73517954 None:intergenic 45.0%
CATACATACCCAGGAACCAT+AGG - chr1.3:73518173-73518192 None:intergenic 45.0%
CCCAGGAACCATAGGATAAT+TGG - chr1.3:73518165-73518184 None:intergenic 45.0%
GAATAGGTCCTTGACTGTTG+AGG + chr1.3:73519590-73519609 MS.gene029589:intron 45.0%
GGGCTAAGAGGTGGAATATT+GGG + chr1.3:73519213-73519232 MS.gene029589:CDS 45.0%
GGTGTATGGAGTGAGAATTC+CGG - chr1.3:73517940-73517959 None:intergenic 45.0%
GTAGGGAGGAAGTCAATTAC+TGG + chr1.3:73519759-73519778 MS.gene029589:intron 45.0%
GTTACACCTATGGTCATGCT+AGG + chr1.3:73519522-73519541 MS.gene029589:CDS 45.0%
TAATGTTGTGTTGCGTAGGG+AGG + chr1.3:73519745-73519764 MS.gene029589:intron 45.0%
TATGGAGTGAGAATTCCGGA+AGG - chr1.3:73517936-73517955 None:intergenic 45.0%
TGGGCTAAGAGGTGGAATAT+TGG + chr1.3:73519212-73519231 MS.gene029589:CDS 45.0%
TGTGAGGTATAGGTTCGTTG+TGG + chr1.3:73519914-73519933 MS.gene029589:CDS 45.0%
TTAGCTGCAAAAGACCCTTC+CGG + chr1.3:73517918-73517937 MS.gene029589:CDS 45.0%
! AACAATGGTGCAACTTGCTC+TGG - chr1.3:73519138-73519157 None:intergenic 45.0%
! CAGAGGAGATGTTGGAGTTT+TGG + chr1.3:73519808-73519827 MS.gene029589:CDS 45.0%
! CATTTTGGGCTGAAAACACC+TGG + chr1.3:73519192-73519211 MS.gene029589:CDS 45.0%
!! AAAGAGGCACTTGAGGATCT+TGG + chr1.3:73519324-73519343 MS.gene029589:CDS 45.0%
!! GAAGAAGAAAGAGGCACTTG+AGG + chr1.3:73519317-73519336 MS.gene029589:CDS 45.0%
AAAACACCTGGGCTAAGAGG+TGG + chr1.3:73519204-73519223 MS.gene029589:CDS 50.0%
ACCATGCAGAAACACAGGAC+CGG + chr1.3:73518061-73518080 MS.gene029589:intron 50.0%
CACTGACGGAAAGATCACTC+AGG + chr1.3:73518489-73518508 MS.gene029589:CDS 50.0%
CATGGGGGTGAAAGTAGCAA+AGG + chr1.3:73519254-73519273 MS.gene029589:CDS 50.0%
CTCCATACACCTACACTCTC+AGG + chr1.3:73517949-73517968 MS.gene029589:CDS 50.0%
CTGAAAACACCTGGGCTAAG+AGG + chr1.3:73519201-73519220 MS.gene029589:CDS 50.0%
CTTGGTGGAGTAGGACACAT+GGG + chr1.3:73519237-73519256 MS.gene029589:CDS 50.0%
GAAGGAGACAGAGGAGATGT+TGG + chr1.3:73519800-73519819 MS.gene029589:CDS 50.0%
GGTGGAATATTGGGTCTTGG+TGG + chr1.3:73519222-73519241 MS.gene029589:CDS 50.0%
GTCACACCTGCACACAACAA+TGG - chr1.3:73519153-73519172 None:intergenic 50.0%
GTGGGAGAAATTGTGGGAGT+TGG + chr1.3:73518373-73518392 MS.gene029589:CDS 50.0%
GTTGCACCATTGTTGTGTGC+AGG + chr1.3:73519144-73519163 MS.gene029589:CDS 50.0%
TCTTGGTGGAGTAGGACACA+TGG + chr1.3:73519236-73519255 MS.gene029589:CDS 50.0%
TTGGTGGAGTAGGACACATG+GGG + chr1.3:73519238-73519257 MS.gene029589:CDS 50.0%
! CACCTGAGAGTGTAGGTGTA+TGG - chr1.3:73517954-73517973 None:intergenic 50.0%
! GTTGGTGAGGTACTAGAGGT+GGG + chr1.3:73518328-73518347 MS.gene029589:CDS 50.0%
!! AAGCTTTGTTGGGAGCGTGA+AGG + chr1.3:73519782-73519801 MS.gene029589:CDS 50.0%
!! AGTGGTTGGTGAGGTACTAG+AGG + chr1.3:73518324-73518343 MS.gene029589:CDS 50.0%
GACGGAAAGATCACTCAGGG+TGG + chr1.3:73518493-73518512 MS.gene029589:CDS 55.0%
TGGTGGAGTAGGACACATGG+GGG + chr1.3:73519239-73519258 MS.gene029589:CDS 55.0%
! CAGGCATGAAGTGGTTGGTG+AGG + chr1.3:73518315-73518334 MS.gene029589:intron 55.0%
! TCCGGTCCTGTGTTTCTGCA+TGG - chr1.3:73518065-73518084 None:intergenic 55.0%
!! GGTTGGTGAGGTACTAGAGG+TGG + chr1.3:73518327-73518346 MS.gene029589:CDS 55.0%
!! GTGGGAGTTGGTCTTCTCGT+TGG + chr1.3:73518385-73518404 MS.gene029589:CDS 55.0%
GGCTCAAGAGGGTGACCAAC+AGG - chr1.3:73519432-73519451 None:intergenic 60.0%
! TGCTCTGGTGCCAATCCCTC+TGG - chr1.3:73519123-73519142 None:intergenic 60.0%
! TGGGAGCGTGAAGGAGACAG+AGG + chr1.3:73519791-73519810 MS.gene029589:CDS 60.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 73517879 73519965 73517879 ID=MS.gene029589
chr1.3 mRNA 73517879 73519965 73517879 ID=MS.gene029589.t1;Parent=MS.gene029589
chr1.3 exon 73517879 73517970 73517879 ID=MS.gene029589.t1.exon1;Parent=MS.gene029589.t1
chr1.3 CDS 73517879 73517970 73517879 ID=cds.MS.gene029589.t1;Parent=MS.gene029589.t1
chr1.3 exon 73518070 73518183 73518070 ID=MS.gene029589.t1.exon2;Parent=MS.gene029589.t1
chr1.3 CDS 73518070 73518183 73518070 ID=cds.MS.gene029589.t1;Parent=MS.gene029589.t1
chr1.3 exon 73518318 73518545 73518318 ID=MS.gene029589.t1.exon3;Parent=MS.gene029589.t1
chr1.3 CDS 73518318 73518545 73518318 ID=cds.MS.gene029589.t1;Parent=MS.gene029589.t1
chr1.3 exon 73519104 73519543 73519104 ID=MS.gene029589.t1.exon4;Parent=MS.gene029589.t1
chr1.3 CDS 73519104 73519543 73519104 ID=cds.MS.gene029589.t1;Parent=MS.gene029589.t1
chr1.3 exon 73519763 73519965 73519763 ID=MS.gene029589.t1.exon5;Parent=MS.gene029589.t1
chr1.3 CDS 73519763 73519965 73519763 ID=cds.MS.gene029589.t1;Parent=MS.gene029589.t1
Gene Sequence

>MS.gene029589

ATGGGTAGCATTGAAGTTGCAGAAAGAACAACAGTAGGATTAGCTGCAAAAGACCCTTCCGGAATTCTCACTCCATACACCTACACTCTCAGGTGATTATCTCAATAAGTATATTTATTATATACTTATATTTGTTTTTTGTGACAATACGTACGTGACGATTAATTATTGTTATGCTTAAAACCATGCAGAAACACAGGACCGGATGATGTTTACATCAAAATTCATTACTGTGGAGTTTGTCATTCTGATCTTCACCAAATCAAAAATGATCTTGGCATGTCCAATTATCCTATGGTTCCTGGGTATGTATGTTAACTTCTTAACTCGTATCTATCAAATTATTATGTCCAGGTTTCGATTAATTTTAAGGTTCTTAATTAGTGTTTGTATCTTTTGTTGAGAAAAATTAACGTTTATGATTGTTTTGAAAAAACAGGCATGAAGTGGTTGGTGAGGTACTAGAGGTGGGTTCAAATGTTACAAGGTTCAAAGTGGGAGAAATTGTGGGAGTTGGTCTTCTCGTTGGTTGCTGCAAAAGCTGCAGAGCATGTGATTCTGAGATTGAGCAATACTGTAACAAGAAGATCTGGTCTTACAATGATGTTTACACTGACGGAAAGATCACTCAGGGTGGCTTTGCTGAATCCACCGTCGTTGAACAAAAGTAATAGCCATAAAATTAAATTAAATTAAATTATTTTTTCATTTTTTTTTTATTATTTTCCGTGCCAATTTAAATTCCACACGTTTTATGCATTTCTGAAAAACCCATTTAAAAAACATTGATGATTTGATGTCTGTTTAGATTATTTTCAACTTATTATCAAATTAGTGTATACTTCATATGAAATGAAAATTGTTTGATCTTATTTGACTTTTTCATTATTGATATAACTTATGTTATAAGTTGTTTATCCAAACGCTTATGTTATGAAAAATGTTTTATGGACGCCCAATTTTTTTCACACCTGTTAAGCACATACAAACTTGCGATTGATTTGATTCAATTGAGTAGATAGTTAATTTAGATATGTTCAATTGTGGTTAATTATGTAGTTGAATTGACCATATTTTTTTTACTGTGAACTAAATTAACTGTGTACCCAACTAAATTAATTACTTTTATGAACCTGGTGTAAAAGGTGTTAGAAAAAATAGATGTTTGAATATTATTACTGAGTTTATTTTAAACTGATTATGTGTTTGGGGATATTACTGTCAGGTTTGTTGTGAAAATACCAGAGGGATTGGCACCAGAGCAAGTTGCACCATTGTTGTGTGCAGGTGTGACTGTGTACAGTCCACTTTCACATTTTGGGCTGAAAACACCTGGGCTAAGAGGTGGAATATTGGGTCTTGGTGGAGTAGGACACATGGGGGTGAAAGTAGCAAAGGCATTAGGTCACCATGTCACTGTGATAAGCTCTTCTGATAAGAAGAAGAAAGAGGCACTTGAGGATCTTGGAGCTGACAATTATCTTGTTAGCTCAGATACTGTTGGAATGCAAGAAGCTGCTGATTCACTTGATTATATCATTGATACTGTTCCTGTTGGTCACCCTCTTGAGCCTTATCTTTCATTGCTCAAAATTGATGGGAAATTGATCTTGATGGGTGTTATTAACACCCCTCTTCAATTTGTTACACCTATGGTCATGCTAGGTAAAAGCCACCTTCTTCCTCATCAATGATTTTTGACTTAATTATTGAATAGGTCCTTGACTGTTGAGGATTTTTAAATTATTTAAAAATTTAGCTCAAGGATAAATTTGAAAATCTCCAAATAGTTCAATAACTTAAAGAGTAATTAAACTTCTTTTTTTCTTTTGATTTTTCCAATTTTAATGATATCTTCTAATCTATTAATGTTGTGTTGCGTAGGGAGGAAGTCAATTACTGGAAGCTTTGTTGGGAGCGTGAAGGAGACAGAGGAGATGTTGGAGTTTTGGAAAGAGAAGGGCCTAACCTCCATGATTGAAATTGTGACCATGGATTACATTAACAAAGCTTTTGAAAGATTGGAGAAGAATGATGTGAGGTATAGGTTCGTTGTGGATGTCAAAGGAAGTAAATTTGAGGAGTGA
Protein sequence

>MS.gene029589.t1

MGSIEVAERTTVGLAAKDPSGILTPYTYTLRNTGPDDVYIKIHYCGVCHSDLHQIKNDLGMSNYPMVPGHEVVGEVLEVGSNVTRFKVGEIVGVGLLVGCCKSCRACDSEIEQYCNKKIWSYNDVYTDGKITQGGFAESTVVEQKFVVKIPEGLAPEQVAPLLCAGVTVYSPLSHFGLKTPGLRGGILGLGGVGHMGVKVAKALGHHVTVISSSDKKKKEALEDLGADNYLVSSDTVGMQEAADSLDYIIDTVPVGHPLEPYLSLLKIDGKLILMGVINTPLQFVTPMVMLGRKSITGSFVGSVKETEEMLEFWKEKGLTSMIEIVTMDYINKAFERLEKNDVRYRFVVDVKGSKFEE